Multiple sequence alignment - TraesCS3D01G514100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G514100 chr3D 100.000 5328 0 0 1 5328 598009183 598014510 0.000000e+00 9840.0
1 TraesCS3D01G514100 chr3D 86.268 284 34 4 428 710 603274337 603274616 2.410000e-78 303.0
2 TraesCS3D01G514100 chr3A 93.648 3999 165 40 704 4647 727989778 727993742 0.000000e+00 5895.0
3 TraesCS3D01G514100 chr3A 87.912 728 49 7 4640 5328 727993917 727994644 0.000000e+00 821.0
4 TraesCS3D01G514100 chr3A 85.855 304 38 3 124 423 727989486 727989788 8.610000e-83 318.0
5 TraesCS3D01G514100 chr3A 86.861 137 12 4 1 131 727989065 727989201 1.200000e-31 148.0
6 TraesCS3D01G514100 chr3A 76.812 207 36 12 88 288 569900435 569900235 7.300000e-19 106.0
7 TraesCS3D01G514100 chr3A 82.418 91 14 2 4646 4734 572150484 572150574 1.590000e-10 78.7
8 TraesCS3D01G514100 chr3B 94.856 2838 123 14 1813 4643 804669105 804671926 0.000000e+00 4410.0
9 TraesCS3D01G514100 chr3B 92.894 577 29 9 1252 1816 804667016 804667592 0.000000e+00 828.0
10 TraesCS3D01G514100 chr3B 95.183 436 20 1 713 1147 804666337 804666772 0.000000e+00 688.0
11 TraesCS3D01G514100 chr3B 84.638 690 70 16 4665 5328 804672146 804672825 0.000000e+00 654.0
12 TraesCS3D01G514100 chr3B 84.293 191 26 4 4457 4644 145368432 145368621 3.280000e-42 183.0
13 TraesCS3D01G514100 chr3B 74.468 376 58 28 31 391 578388755 578388403 1.560000e-25 128.0
14 TraesCS3D01G514100 chr3B 76.015 271 42 16 31 283 711764710 711764445 9.370000e-23 119.0
15 TraesCS3D01G514100 chr3B 82.836 134 13 5 31 154 667679920 667679787 1.570000e-20 111.0
16 TraesCS3D01G514100 chr3B 83.607 61 8 2 4645 4703 145415637 145415697 7.450000e-04 56.5
17 TraesCS3D01G514100 chr4A 87.762 286 31 4 431 715 96266848 96266566 1.110000e-86 331.0
18 TraesCS3D01G514100 chr4A 76.053 380 60 25 31 391 697990134 697989767 9.180000e-38 169.0
19 TraesCS3D01G514100 chr2D 85.614 285 36 5 428 710 632808413 632808694 1.450000e-75 294.0
20 TraesCS3D01G514100 chr2B 84.694 294 42 3 428 720 798707277 798707568 1.880000e-74 291.0
21 TraesCS3D01G514100 chr2B 88.189 127 14 1 4457 4582 52413067 52412941 3.320000e-32 150.0
22 TraesCS3D01G514100 chr2B 80.000 185 28 8 209 391 131134858 131135035 1.560000e-25 128.0
23 TraesCS3D01G514100 chr2B 100.000 30 0 0 1435 1464 109972796 109972767 7.450000e-04 56.5
24 TraesCS3D01G514100 chr7D 85.017 287 39 4 438 723 613016523 613016240 6.750000e-74 289.0
25 TraesCS3D01G514100 chr7D 84.615 286 41 3 428 712 141345356 141345639 1.130000e-71 281.0
26 TraesCS3D01G514100 chr1D 85.211 284 39 3 428 710 83163216 83162935 6.750000e-74 289.0
27 TraesCS3D01G514100 chr1D 79.000 200 27 11 209 404 251706118 251706306 7.250000e-24 122.0
28 TraesCS3D01G514100 chr1B 84.965 286 36 6 428 710 484457836 484457555 3.140000e-72 283.0
29 TraesCS3D01G514100 chr1B 84.000 200 27 5 4448 4644 32065332 32065135 2.530000e-43 187.0
30 TraesCS3D01G514100 chr4D 84.068 295 42 4 428 719 101499077 101498785 4.060000e-71 279.0
31 TraesCS3D01G514100 chr7B 81.570 293 39 13 107 391 610295053 610295338 1.490000e-55 228.0
32 TraesCS3D01G514100 chr7B 77.320 194 33 11 200 390 749556409 749556594 2.620000e-18 104.0
33 TraesCS3D01G514100 chrUn 77.720 386 66 15 31 399 18084077 18083695 8.980000e-53 219.0
34 TraesCS3D01G514100 chrUn 79.907 214 35 7 183 391 79688061 79688271 3.320000e-32 150.0
35 TraesCS3D01G514100 chr6D 75.258 388 63 23 31 391 82591317 82590936 2.570000e-33 154.0
36 TraesCS3D01G514100 chr5D 83.735 166 20 6 4453 4614 384630576 384630738 3.320000e-32 150.0
37 TraesCS3D01G514100 chr5D 72.951 366 63 21 41 392 44117361 44117704 1.580000e-15 95.3
38 TraesCS3D01G514100 chr5D 80.769 130 12 9 31 154 230493975 230494097 7.350000e-14 89.8
39 TraesCS3D01G514100 chr5B 75.198 379 63 19 31 391 67031407 67031772 3.320000e-32 150.0
40 TraesCS3D01G514100 chr2A 83.030 165 24 4 4452 4614 475141646 475141484 4.300000e-31 147.0
41 TraesCS3D01G514100 chr2A 84.615 91 12 2 4646 4734 672973170 672973080 7.350000e-14 89.8
42 TraesCS3D01G514100 chr7A 82.822 163 23 4 4456 4614 62730660 62730499 2.000000e-29 141.0
43 TraesCS3D01G514100 chr7A 75.633 316 56 16 88 392 548332784 548332479 2.590000e-28 137.0
44 TraesCS3D01G514100 chr1A 85.294 136 19 1 4456 4590 10852218 10852353 7.200000e-29 139.0
45 TraesCS3D01G514100 chr6B 79.397 199 35 4 183 378 714272376 714272181 9.310000e-28 135.0
46 TraesCS3D01G514100 chr6B 84.000 125 11 6 31 150 185099305 185099425 1.570000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G514100 chr3D 598009183 598014510 5327 False 9840.0 9840 100.00000 1 5328 1 chr3D.!!$F1 5327
1 TraesCS3D01G514100 chr3A 727989065 727994644 5579 False 1795.5 5895 88.56900 1 5328 4 chr3A.!!$F2 5327
2 TraesCS3D01G514100 chr3B 804666337 804672825 6488 False 1645.0 4410 91.89275 713 5328 4 chr3B.!!$F3 4615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
571 874 0.031585 TATGATGCGCCTACGGTGAC 59.968 55.0 4.18 0.00 40.57 3.67 F
1811 2273 0.036577 ATGAGTGCTGCTGGTCAGAC 60.037 55.0 0.00 0.00 45.72 3.51 F
2242 4228 0.371645 CCGATTGCGCTTCTCTTGAC 59.628 55.0 9.73 0.00 35.83 3.18 F
3083 5070 1.043116 TGATGGAGCTACCGGTGGAG 61.043 60.0 23.78 11.46 42.61 3.86 F
3951 5939 1.606885 GGGGTGTCGATCGGTTACCA 61.607 60.0 26.10 11.43 33.10 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1920 3900 0.188342 AACCTCCACCACCTGCATTT 59.812 50.0 0.00 0.00 0.00 2.32 R
2904 4891 0.035056 GAGAAGGGATGGTGGGTGTG 60.035 60.0 0.00 0.00 0.00 3.82 R
3783 5771 0.108424 AGACCTGCAGAAGATCGTGC 60.108 55.0 17.39 9.94 40.29 5.34 R
4046 6036 0.177836 TGTGCATACGGGTCATCTGG 59.822 55.0 0.00 0.00 0.00 3.86 R
5223 7455 0.482446 AACTCCAGATTTGGCACCCA 59.518 50.0 0.00 0.00 44.63 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
152 451 3.121261 GCGTGCTTGACAATTTTCATGTG 60.121 43.478 8.70 2.49 0.00 3.21
154 453 4.146961 CGTGCTTGACAATTTTCATGTGAC 59.853 41.667 8.70 5.88 0.00 3.67
155 454 4.146961 GTGCTTGACAATTTTCATGTGACG 59.853 41.667 8.70 0.00 0.00 4.35
157 456 4.539870 CTTGACAATTTTCATGTGACGCT 58.460 39.130 0.00 0.00 0.00 5.07
158 457 5.681337 TTGACAATTTTCATGTGACGCTA 57.319 34.783 0.00 0.00 0.00 4.26
164 463 6.818644 ACAATTTTCATGTGACGCTAGATACT 59.181 34.615 0.00 0.00 0.00 2.12
165 464 7.979537 ACAATTTTCATGTGACGCTAGATACTA 59.020 33.333 0.00 0.00 0.00 1.82
166 465 8.483218 CAATTTTCATGTGACGCTAGATACTAG 58.517 37.037 0.00 0.00 0.00 2.57
171 470 3.560481 TGTGACGCTAGATACTAGTGCTC 59.440 47.826 16.06 13.29 0.00 4.26
218 521 7.857885 GTGTAGCATTTAGAGATAACATTTGGC 59.142 37.037 0.00 0.00 0.00 4.52
226 529 4.508124 AGAGATAACATTTGGCGTTCGATC 59.492 41.667 0.00 0.00 0.00 3.69
233 536 3.701532 TTTGGCGTTCGATCTGTTTTT 57.298 38.095 0.00 0.00 0.00 1.94
251 554 0.800012 TTTCGCACCGGTCAAATAGC 59.200 50.000 2.59 2.44 0.00 2.97
255 558 1.593006 CGCACCGGTCAAATAGCTTAG 59.407 52.381 2.59 0.00 0.00 2.18
272 575 5.644977 GCTTAGGCTTTTCCAGTAAACAT 57.355 39.130 0.00 0.00 37.29 2.71
289 592 5.543507 AAACATTTGCAGGTACCATTTGA 57.456 34.783 15.94 0.00 0.00 2.69
294 597 0.811281 GCAGGTACCATTTGAGTGCC 59.189 55.000 15.94 0.00 40.03 5.01
300 603 3.367292 GGTACCATTTGAGTGCCACAATG 60.367 47.826 7.15 0.00 39.56 2.82
303 606 3.243839 ACCATTTGAGTGCCACAATGAAC 60.244 43.478 7.69 0.00 31.20 3.18
310 613 2.816087 AGTGCCACAATGAACACATCTC 59.184 45.455 0.00 0.00 35.47 2.75
315 618 4.860907 GCCACAATGAACACATCTCATTTC 59.139 41.667 0.00 0.00 40.69 2.17
319 622 7.327761 CCACAATGAACACATCTCATTTCTTTC 59.672 37.037 0.00 0.00 40.69 2.62
360 663 2.524569 AAACATTTTTGACGGGCAGG 57.475 45.000 0.00 0.00 0.00 4.85
414 717 7.553881 TTTGGTAGAAGTCTTTCAACTCAAG 57.446 36.000 0.00 0.00 35.70 3.02
418 721 7.827236 TGGTAGAAGTCTTTCAACTCAAGAAAA 59.173 33.333 0.00 0.00 34.84 2.29
419 722 8.674607 GGTAGAAGTCTTTCAACTCAAGAAAAA 58.325 33.333 0.00 0.00 34.84 1.94
439 742 4.601406 AAAATGGCTATGGTTAGGTGGA 57.399 40.909 0.00 0.00 0.00 4.02
440 743 3.577805 AATGGCTATGGTTAGGTGGAC 57.422 47.619 0.00 0.00 0.00 4.02
441 744 1.959710 TGGCTATGGTTAGGTGGACA 58.040 50.000 0.00 0.00 0.00 4.02
442 745 1.837439 TGGCTATGGTTAGGTGGACAG 59.163 52.381 0.00 0.00 0.00 3.51
443 746 1.838077 GGCTATGGTTAGGTGGACAGT 59.162 52.381 0.00 0.00 0.00 3.55
444 747 2.420129 GGCTATGGTTAGGTGGACAGTG 60.420 54.545 0.00 0.00 0.00 3.66
445 748 2.500098 GCTATGGTTAGGTGGACAGTGA 59.500 50.000 0.00 0.00 0.00 3.41
446 749 3.134804 GCTATGGTTAGGTGGACAGTGAT 59.865 47.826 0.00 0.00 0.00 3.06
447 750 4.344102 GCTATGGTTAGGTGGACAGTGATA 59.656 45.833 0.00 0.00 0.00 2.15
448 751 5.012148 GCTATGGTTAGGTGGACAGTGATAT 59.988 44.000 0.00 0.00 0.00 1.63
449 752 5.552870 ATGGTTAGGTGGACAGTGATATC 57.447 43.478 0.00 0.00 0.00 1.63
450 753 3.709653 TGGTTAGGTGGACAGTGATATCC 59.290 47.826 0.00 0.00 0.00 2.59
451 754 3.967987 GGTTAGGTGGACAGTGATATCCT 59.032 47.826 0.00 2.19 0.00 3.24
452 755 4.039366 GGTTAGGTGGACAGTGATATCCTC 59.961 50.000 0.00 0.00 0.00 3.71
453 756 3.404869 AGGTGGACAGTGATATCCTCA 57.595 47.619 0.00 0.00 0.00 3.86
454 757 3.303938 AGGTGGACAGTGATATCCTCAG 58.696 50.000 0.00 0.00 33.51 3.35
455 758 3.034635 GGTGGACAGTGATATCCTCAGT 58.965 50.000 0.00 0.00 38.09 3.41
456 759 3.068873 GGTGGACAGTGATATCCTCAGTC 59.931 52.174 0.00 6.21 35.23 3.51
457 760 3.068873 GTGGACAGTGATATCCTCAGTCC 59.931 52.174 21.49 21.49 44.15 3.85
458 761 3.300388 GGACAGTGATATCCTCAGTCCA 58.700 50.000 22.47 0.00 43.70 4.02
459 762 3.068873 GGACAGTGATATCCTCAGTCCAC 59.931 52.174 22.47 6.72 43.70 4.02
460 763 3.034635 ACAGTGATATCCTCAGTCCACC 58.965 50.000 0.00 0.00 35.23 4.61
461 764 3.303938 CAGTGATATCCTCAGTCCACCT 58.696 50.000 0.00 0.00 35.23 4.00
462 765 3.069300 CAGTGATATCCTCAGTCCACCTG 59.931 52.174 0.00 0.00 42.97 4.00
463 766 2.366916 GTGATATCCTCAGTCCACCTGG 59.633 54.545 0.00 0.00 41.83 4.45
464 767 1.974236 GATATCCTCAGTCCACCTGGG 59.026 57.143 0.00 0.00 41.76 4.45
465 768 0.716591 TATCCTCAGTCCACCTGGGT 59.283 55.000 0.00 0.00 40.35 4.51
466 769 0.178861 ATCCTCAGTCCACCTGGGTT 60.179 55.000 0.00 0.00 40.35 4.11
467 770 0.836400 TCCTCAGTCCACCTGGGTTC 60.836 60.000 0.00 0.00 40.35 3.62
468 771 1.127567 CCTCAGTCCACCTGGGTTCA 61.128 60.000 0.00 0.00 40.35 3.18
469 772 0.764890 CTCAGTCCACCTGGGTTCAA 59.235 55.000 0.00 0.00 41.83 2.69
470 773 0.764890 TCAGTCCACCTGGGTTCAAG 59.235 55.000 0.00 0.00 41.83 3.02
471 774 0.474184 CAGTCCACCTGGGTTCAAGT 59.526 55.000 0.00 0.00 37.54 3.16
472 775 0.765510 AGTCCACCTGGGTTCAAGTC 59.234 55.000 0.00 0.00 38.11 3.01
473 776 0.250770 GTCCACCTGGGTTCAAGTCC 60.251 60.000 0.00 0.00 38.11 3.85
474 777 0.401395 TCCACCTGGGTTCAAGTCCT 60.401 55.000 0.00 0.00 38.11 3.85
475 778 0.250901 CCACCTGGGTTCAAGTCCTG 60.251 60.000 0.00 0.00 0.00 3.86
476 779 0.250901 CACCTGGGTTCAAGTCCTGG 60.251 60.000 0.00 0.00 44.60 4.45
477 780 0.697854 ACCTGGGTTCAAGTCCTGGT 60.698 55.000 0.00 5.30 46.26 4.00
478 781 0.250901 CCTGGGTTCAAGTCCTGGTG 60.251 60.000 0.00 0.00 37.37 4.17
479 782 0.890996 CTGGGTTCAAGTCCTGGTGC 60.891 60.000 0.00 0.00 0.00 5.01
480 783 1.352622 TGGGTTCAAGTCCTGGTGCT 61.353 55.000 0.00 0.00 0.00 4.40
481 784 0.606673 GGGTTCAAGTCCTGGTGCTC 60.607 60.000 0.00 0.00 0.00 4.26
482 785 0.951040 GGTTCAAGTCCTGGTGCTCG 60.951 60.000 0.00 0.00 0.00 5.03
483 786 1.301716 TTCAAGTCCTGGTGCTCGC 60.302 57.895 0.00 0.00 0.00 5.03
484 787 2.031012 CAAGTCCTGGTGCTCGCA 59.969 61.111 0.00 0.00 0.00 5.10
485 788 1.376424 CAAGTCCTGGTGCTCGCAT 60.376 57.895 0.00 0.00 0.00 4.73
486 789 0.957395 CAAGTCCTGGTGCTCGCATT 60.957 55.000 0.00 0.00 0.00 3.56
487 790 0.250901 AAGTCCTGGTGCTCGCATTT 60.251 50.000 0.00 0.00 0.00 2.32
488 791 0.613260 AGTCCTGGTGCTCGCATTTA 59.387 50.000 0.00 0.00 0.00 1.40
489 792 1.210478 AGTCCTGGTGCTCGCATTTAT 59.790 47.619 0.00 0.00 0.00 1.40
490 793 2.017049 GTCCTGGTGCTCGCATTTATT 58.983 47.619 0.00 0.00 0.00 1.40
491 794 2.423538 GTCCTGGTGCTCGCATTTATTT 59.576 45.455 0.00 0.00 0.00 1.40
492 795 3.088532 TCCTGGTGCTCGCATTTATTTT 58.911 40.909 0.00 0.00 0.00 1.82
493 796 3.119531 TCCTGGTGCTCGCATTTATTTTG 60.120 43.478 0.00 0.00 0.00 2.44
494 797 3.181397 CTGGTGCTCGCATTTATTTTGG 58.819 45.455 0.00 0.00 0.00 3.28
495 798 2.822561 TGGTGCTCGCATTTATTTTGGA 59.177 40.909 0.00 0.00 0.00 3.53
496 799 3.446873 TGGTGCTCGCATTTATTTTGGAT 59.553 39.130 0.00 0.00 0.00 3.41
497 800 4.081752 TGGTGCTCGCATTTATTTTGGATT 60.082 37.500 0.00 0.00 0.00 3.01
498 801 4.869861 GGTGCTCGCATTTATTTTGGATTT 59.130 37.500 0.00 0.00 0.00 2.17
499 802 6.039616 GGTGCTCGCATTTATTTTGGATTTA 58.960 36.000 0.00 0.00 0.00 1.40
500 803 6.701400 GGTGCTCGCATTTATTTTGGATTTAT 59.299 34.615 0.00 0.00 0.00 1.40
501 804 7.224557 GGTGCTCGCATTTATTTTGGATTTATT 59.775 33.333 0.00 0.00 0.00 1.40
502 805 8.603181 GTGCTCGCATTTATTTTGGATTTATTT 58.397 29.630 0.00 0.00 0.00 1.40
503 806 8.816144 TGCTCGCATTTATTTTGGATTTATTTC 58.184 29.630 0.00 0.00 0.00 2.17
504 807 8.816144 GCTCGCATTTATTTTGGATTTATTTCA 58.184 29.630 0.00 0.00 0.00 2.69
515 818 7.826260 TTGGATTTATTTCAAGATTTTCGGC 57.174 32.000 0.00 0.00 0.00 5.54
516 819 6.033341 TGGATTTATTTCAAGATTTTCGGCG 58.967 36.000 0.00 0.00 0.00 6.46
517 820 6.127869 TGGATTTATTTCAAGATTTTCGGCGA 60.128 34.615 4.99 4.99 0.00 5.54
518 821 6.918022 GGATTTATTTCAAGATTTTCGGCGAT 59.082 34.615 11.76 0.00 0.00 4.58
519 822 7.096477 GGATTTATTTCAAGATTTTCGGCGATG 60.096 37.037 11.76 4.79 0.00 3.84
520 823 2.542766 TTCAAGATTTTCGGCGATGC 57.457 45.000 11.76 0.11 0.00 3.91
521 824 0.373370 TCAAGATTTTCGGCGATGCG 59.627 50.000 11.76 0.00 0.00 4.73
531 834 4.505217 GCGATGCGCGTTCAGTGG 62.505 66.667 8.43 0.00 44.55 4.00
532 835 2.809174 CGATGCGCGTTCAGTGGA 60.809 61.111 8.43 0.00 34.64 4.02
533 836 2.379634 CGATGCGCGTTCAGTGGAA 61.380 57.895 8.43 0.00 33.49 3.53
534 837 1.421485 GATGCGCGTTCAGTGGAAG 59.579 57.895 8.43 0.00 33.49 3.46
535 838 1.970917 GATGCGCGTTCAGTGGAAGG 61.971 60.000 8.43 0.00 40.86 3.46
536 839 2.357034 GCGCGTTCAGTGGAAGGA 60.357 61.111 8.43 0.00 40.47 3.36
537 840 2.383527 GCGCGTTCAGTGGAAGGAG 61.384 63.158 8.43 0.00 40.47 3.69
538 841 1.289066 CGCGTTCAGTGGAAGGAGA 59.711 57.895 0.00 0.00 39.91 3.71
539 842 1.009389 CGCGTTCAGTGGAAGGAGAC 61.009 60.000 0.00 0.00 39.91 3.36
540 843 1.009389 GCGTTCAGTGGAAGGAGACG 61.009 60.000 1.72 0.00 40.47 4.18
541 844 0.314302 CGTTCAGTGGAAGGAGACGT 59.686 55.000 0.00 0.00 40.47 4.34
542 845 1.269621 CGTTCAGTGGAAGGAGACGTT 60.270 52.381 0.00 0.00 40.47 3.99
543 846 2.802057 CGTTCAGTGGAAGGAGACGTTT 60.802 50.000 0.00 0.00 40.47 3.60
544 847 2.801111 GTTCAGTGGAAGGAGACGTTTC 59.199 50.000 0.00 0.00 32.62 2.78
545 848 1.343465 TCAGTGGAAGGAGACGTTTCC 59.657 52.381 17.16 17.16 42.56 3.13
546 849 0.317479 AGTGGAAGGAGACGTTTCCG 59.683 55.000 18.59 0.00 44.66 4.30
559 862 2.671396 ACGTTTCCGTCAACTATGATGC 59.329 45.455 0.00 0.00 46.28 3.91
560 863 2.285026 CGTTTCCGTCAACTATGATGCG 60.285 50.000 0.00 0.00 40.59 4.73
561 864 1.286501 TTCCGTCAACTATGATGCGC 58.713 50.000 0.00 0.00 40.59 6.09
562 865 0.529773 TCCGTCAACTATGATGCGCC 60.530 55.000 4.18 0.00 40.59 6.53
563 866 0.530650 CCGTCAACTATGATGCGCCT 60.531 55.000 4.18 0.00 40.59 5.52
564 867 1.269569 CCGTCAACTATGATGCGCCTA 60.270 52.381 4.18 0.00 40.59 3.93
565 868 1.787155 CGTCAACTATGATGCGCCTAC 59.213 52.381 4.18 0.00 38.01 3.18
566 869 1.787155 GTCAACTATGATGCGCCTACG 59.213 52.381 4.18 0.00 38.01 3.51
567 870 1.139989 CAACTATGATGCGCCTACGG 58.860 55.000 4.18 0.00 40.57 4.02
568 871 0.750850 AACTATGATGCGCCTACGGT 59.249 50.000 4.18 0.00 40.57 4.83
569 872 0.032130 ACTATGATGCGCCTACGGTG 59.968 55.000 4.18 0.00 40.57 4.94
570 873 0.313987 CTATGATGCGCCTACGGTGA 59.686 55.000 4.18 0.00 40.57 4.02
571 874 0.031585 TATGATGCGCCTACGGTGAC 59.968 55.000 4.18 0.00 40.57 3.67
572 875 1.676678 ATGATGCGCCTACGGTGACT 61.677 55.000 4.18 0.00 40.57 3.41
573 876 1.153628 GATGCGCCTACGGTGACTT 60.154 57.895 4.18 0.00 40.57 3.01
574 877 0.739813 GATGCGCCTACGGTGACTTT 60.740 55.000 4.18 0.00 40.57 2.66
575 878 0.533491 ATGCGCCTACGGTGACTTTA 59.467 50.000 4.18 0.00 40.57 1.85
576 879 0.533491 TGCGCCTACGGTGACTTTAT 59.467 50.000 4.18 0.00 40.57 1.40
577 880 1.750206 TGCGCCTACGGTGACTTTATA 59.250 47.619 4.18 0.00 40.57 0.98
578 881 2.166050 TGCGCCTACGGTGACTTTATAA 59.834 45.455 4.18 0.00 40.57 0.98
579 882 3.189285 GCGCCTACGGTGACTTTATAAA 58.811 45.455 0.00 0.00 40.57 1.40
580 883 3.618150 GCGCCTACGGTGACTTTATAAAA 59.382 43.478 0.00 0.00 40.57 1.52
581 884 4.271776 GCGCCTACGGTGACTTTATAAAAT 59.728 41.667 0.00 0.00 40.57 1.82
582 885 5.557703 GCGCCTACGGTGACTTTATAAAATC 60.558 44.000 0.00 0.00 40.57 2.17
583 886 5.751990 CGCCTACGGTGACTTTATAAAATCT 59.248 40.000 8.05 0.00 34.74 2.40
584 887 6.074463 CGCCTACGGTGACTTTATAAAATCTC 60.074 42.308 8.05 4.52 34.74 2.75
585 888 6.759827 GCCTACGGTGACTTTATAAAATCTCA 59.240 38.462 8.05 2.86 0.00 3.27
586 889 7.279313 GCCTACGGTGACTTTATAAAATCTCAA 59.721 37.037 8.05 0.00 0.00 3.02
587 890 8.818057 CCTACGGTGACTTTATAAAATCTCAAG 58.182 37.037 8.05 5.45 0.00 3.02
588 891 9.582431 CTACGGTGACTTTATAAAATCTCAAGA 57.418 33.333 8.05 0.00 0.00 3.02
590 893 8.883731 ACGGTGACTTTATAAAATCTCAAGATG 58.116 33.333 8.05 0.00 34.49 2.90
591 894 9.098355 CGGTGACTTTATAAAATCTCAAGATGA 57.902 33.333 8.05 0.00 34.49 2.92
600 903 5.961396 AAATCTCAAGATGATATGCCAGC 57.039 39.130 0.00 0.00 34.49 4.85
601 904 4.912317 ATCTCAAGATGATATGCCAGCT 57.088 40.909 0.00 0.00 33.74 4.24
602 905 4.268797 TCTCAAGATGATATGCCAGCTC 57.731 45.455 0.00 0.00 30.67 4.09
603 906 3.644738 TCTCAAGATGATATGCCAGCTCA 59.355 43.478 0.00 0.00 30.67 4.26
604 907 4.102054 TCTCAAGATGATATGCCAGCTCAA 59.898 41.667 0.00 0.00 30.67 3.02
605 908 4.981812 TCAAGATGATATGCCAGCTCAAT 58.018 39.130 0.00 0.00 30.67 2.57
606 909 5.001874 TCAAGATGATATGCCAGCTCAATC 58.998 41.667 0.00 0.00 30.67 2.67
607 910 4.912317 AGATGATATGCCAGCTCAATCT 57.088 40.909 0.00 0.00 0.00 2.40
608 911 5.244189 AGATGATATGCCAGCTCAATCTT 57.756 39.130 0.00 0.00 0.00 2.40
609 912 5.632118 AGATGATATGCCAGCTCAATCTTT 58.368 37.500 0.00 0.00 0.00 2.52
610 913 5.706369 AGATGATATGCCAGCTCAATCTTTC 59.294 40.000 0.00 0.00 0.00 2.62
611 914 3.811497 TGATATGCCAGCTCAATCTTTCG 59.189 43.478 0.00 0.00 0.00 3.46
612 915 1.386533 ATGCCAGCTCAATCTTTCGG 58.613 50.000 0.00 0.00 0.00 4.30
613 916 0.324614 TGCCAGCTCAATCTTTCGGA 59.675 50.000 0.00 0.00 0.00 4.55
614 917 1.012841 GCCAGCTCAATCTTTCGGAG 58.987 55.000 0.00 0.00 0.00 4.63
615 918 1.661341 CCAGCTCAATCTTTCGGAGG 58.339 55.000 0.00 0.00 0.00 4.30
616 919 1.012841 CAGCTCAATCTTTCGGAGGC 58.987 55.000 0.00 0.00 0.00 4.70
617 920 0.460987 AGCTCAATCTTTCGGAGGCG 60.461 55.000 0.00 0.00 0.00 5.52
618 921 0.741221 GCTCAATCTTTCGGAGGCGT 60.741 55.000 0.00 0.00 0.00 5.68
619 922 1.726853 CTCAATCTTTCGGAGGCGTT 58.273 50.000 0.00 0.00 0.00 4.84
620 923 1.661112 CTCAATCTTTCGGAGGCGTTC 59.339 52.381 0.00 0.00 0.00 3.95
621 924 1.001520 TCAATCTTTCGGAGGCGTTCA 59.998 47.619 0.00 0.00 0.00 3.18
622 925 2.009774 CAATCTTTCGGAGGCGTTCAT 58.990 47.619 0.00 0.00 0.00 2.57
623 926 3.118920 TCAATCTTTCGGAGGCGTTCATA 60.119 43.478 0.00 0.00 0.00 2.15
624 927 2.579207 TCTTTCGGAGGCGTTCATAG 57.421 50.000 0.00 0.00 0.00 2.23
625 928 1.136305 TCTTTCGGAGGCGTTCATAGG 59.864 52.381 0.00 0.00 0.00 2.57
626 929 0.177141 TTTCGGAGGCGTTCATAGGG 59.823 55.000 0.00 0.00 0.00 3.53
627 930 1.682451 TTCGGAGGCGTTCATAGGGG 61.682 60.000 0.00 0.00 0.00 4.79
628 931 2.432300 CGGAGGCGTTCATAGGGGT 61.432 63.158 0.00 0.00 0.00 4.95
629 932 1.111116 CGGAGGCGTTCATAGGGGTA 61.111 60.000 0.00 0.00 0.00 3.69
630 933 1.125633 GGAGGCGTTCATAGGGGTAA 58.874 55.000 0.00 0.00 0.00 2.85
631 934 1.070289 GGAGGCGTTCATAGGGGTAAG 59.930 57.143 0.00 0.00 0.00 2.34
632 935 1.070289 GAGGCGTTCATAGGGGTAAGG 59.930 57.143 0.00 0.00 0.00 2.69
633 936 0.835276 GGCGTTCATAGGGGTAAGGT 59.165 55.000 0.00 0.00 0.00 3.50
634 937 1.474498 GGCGTTCATAGGGGTAAGGTG 60.474 57.143 0.00 0.00 0.00 4.00
635 938 1.208776 GCGTTCATAGGGGTAAGGTGT 59.791 52.381 0.00 0.00 0.00 4.16
636 939 2.901249 CGTTCATAGGGGTAAGGTGTG 58.099 52.381 0.00 0.00 0.00 3.82
637 940 2.640184 GTTCATAGGGGTAAGGTGTGC 58.360 52.381 0.00 0.00 0.00 4.57
638 941 0.828022 TCATAGGGGTAAGGTGTGCG 59.172 55.000 0.00 0.00 0.00 5.34
639 942 0.539986 CATAGGGGTAAGGTGTGCGT 59.460 55.000 0.00 0.00 0.00 5.24
640 943 1.758280 CATAGGGGTAAGGTGTGCGTA 59.242 52.381 0.00 0.00 0.00 4.42
641 944 2.163810 TAGGGGTAAGGTGTGCGTAT 57.836 50.000 0.00 0.00 0.00 3.06
642 945 0.539986 AGGGGTAAGGTGTGCGTATG 59.460 55.000 0.00 0.00 0.00 2.39
643 946 0.251073 GGGGTAAGGTGTGCGTATGT 59.749 55.000 0.00 0.00 0.00 2.29
644 947 1.365699 GGGTAAGGTGTGCGTATGTG 58.634 55.000 0.00 0.00 0.00 3.21
645 948 0.725117 GGTAAGGTGTGCGTATGTGC 59.275 55.000 0.00 0.00 0.00 4.57
646 949 0.368907 GTAAGGTGTGCGTATGTGCG 59.631 55.000 0.00 0.00 37.81 5.34
647 950 0.038067 TAAGGTGTGCGTATGTGCGT 60.038 50.000 0.00 0.00 37.81 5.24
648 951 0.882927 AAGGTGTGCGTATGTGCGTT 60.883 50.000 0.00 0.00 37.81 4.84
649 952 1.131826 GGTGTGCGTATGTGCGTTC 59.868 57.895 0.00 0.00 37.81 3.95
650 953 1.561717 GGTGTGCGTATGTGCGTTCA 61.562 55.000 0.00 0.00 37.81 3.18
651 954 0.442310 GTGTGCGTATGTGCGTTCAT 59.558 50.000 0.00 0.87 37.81 2.57
652 955 1.656594 GTGTGCGTATGTGCGTTCATA 59.343 47.619 0.00 0.00 37.81 2.15
653 956 1.923864 TGTGCGTATGTGCGTTCATAG 59.076 47.619 2.83 0.73 37.81 2.23
654 957 1.257936 GTGCGTATGTGCGTTCATAGG 59.742 52.381 13.25 13.25 38.44 2.57
655 958 1.135333 TGCGTATGTGCGTTCATAGGA 59.865 47.619 18.31 6.98 37.97 2.94
656 959 1.787155 GCGTATGTGCGTTCATAGGAG 59.213 52.381 18.31 8.82 37.97 3.69
657 960 2.798499 GCGTATGTGCGTTCATAGGAGT 60.798 50.000 18.31 0.00 37.97 3.85
658 961 2.789339 CGTATGTGCGTTCATAGGAGTG 59.211 50.000 12.66 0.00 37.97 3.51
659 962 3.488553 CGTATGTGCGTTCATAGGAGTGA 60.489 47.826 12.66 0.00 37.97 3.41
660 963 2.654749 TGTGCGTTCATAGGAGTGAG 57.345 50.000 0.00 0.00 0.00 3.51
661 964 1.893137 TGTGCGTTCATAGGAGTGAGT 59.107 47.619 0.00 0.00 0.00 3.41
662 965 2.263077 GTGCGTTCATAGGAGTGAGTG 58.737 52.381 0.00 0.00 0.00 3.51
663 966 1.893137 TGCGTTCATAGGAGTGAGTGT 59.107 47.619 0.00 0.00 0.00 3.55
664 967 3.086282 TGCGTTCATAGGAGTGAGTGTA 58.914 45.455 0.00 0.00 0.00 2.90
665 968 3.119602 TGCGTTCATAGGAGTGAGTGTAC 60.120 47.826 0.00 0.00 0.00 2.90
666 969 3.681855 CGTTCATAGGAGTGAGTGTACG 58.318 50.000 0.00 0.00 0.00 3.67
667 970 3.436496 GTTCATAGGAGTGAGTGTACGC 58.564 50.000 0.00 0.00 0.00 4.42
668 971 1.669265 TCATAGGAGTGAGTGTACGCG 59.331 52.381 3.53 3.53 0.00 6.01
669 972 0.381089 ATAGGAGTGAGTGTACGCGC 59.619 55.000 5.73 0.00 0.00 6.86
670 973 1.974249 TAGGAGTGAGTGTACGCGCG 61.974 60.000 30.96 30.96 0.00 6.86
671 974 2.126965 GAGTGAGTGTACGCGCGT 60.127 61.111 39.05 39.05 0.00 6.01
672 975 1.133253 GAGTGAGTGTACGCGCGTA 59.867 57.895 36.55 36.55 0.00 4.42
673 976 0.247974 GAGTGAGTGTACGCGCGTAT 60.248 55.000 40.91 27.96 32.82 3.06
674 977 1.004610 GAGTGAGTGTACGCGCGTATA 60.005 52.381 40.91 36.13 32.82 1.47
675 978 1.600957 AGTGAGTGTACGCGCGTATAT 59.399 47.619 40.91 29.57 32.82 0.86
676 979 2.802247 AGTGAGTGTACGCGCGTATATA 59.198 45.455 40.91 27.85 32.82 0.86
677 980 3.434641 AGTGAGTGTACGCGCGTATATAT 59.565 43.478 40.91 30.08 32.82 0.86
678 981 3.537225 GTGAGTGTACGCGCGTATATATG 59.463 47.826 40.91 9.66 32.82 1.78
679 982 3.432933 TGAGTGTACGCGCGTATATATGA 59.567 43.478 40.91 23.81 32.82 2.15
680 983 3.999769 AGTGTACGCGCGTATATATGAG 58.000 45.455 40.91 8.05 32.82 2.90
681 984 2.525096 GTGTACGCGCGTATATATGAGC 59.475 50.000 40.91 26.55 35.14 4.26
687 990 2.279582 GCGTATATATGAGCGGCTGT 57.720 50.000 7.50 0.00 0.00 4.40
688 991 1.920574 GCGTATATATGAGCGGCTGTG 59.079 52.381 7.50 0.00 0.00 3.66
689 992 2.671351 GCGTATATATGAGCGGCTGTGT 60.671 50.000 7.50 0.00 0.00 3.72
690 993 3.172050 CGTATATATGAGCGGCTGTGTC 58.828 50.000 7.50 0.00 0.00 3.67
691 994 3.365969 CGTATATATGAGCGGCTGTGTCA 60.366 47.826 7.50 0.00 0.00 3.58
692 995 2.800881 TATATGAGCGGCTGTGTCAG 57.199 50.000 7.50 0.00 34.12 3.51
693 996 0.826715 ATATGAGCGGCTGTGTCAGT 59.173 50.000 7.50 0.00 33.43 3.41
694 997 1.470051 TATGAGCGGCTGTGTCAGTA 58.530 50.000 7.50 0.00 33.43 2.74
695 998 0.108615 ATGAGCGGCTGTGTCAGTAC 60.109 55.000 7.50 0.00 33.43 2.73
696 999 1.179174 TGAGCGGCTGTGTCAGTACT 61.179 55.000 7.50 0.00 33.43 2.73
697 1000 0.734253 GAGCGGCTGTGTCAGTACTG 60.734 60.000 17.17 17.17 33.43 2.74
698 1001 1.179174 AGCGGCTGTGTCAGTACTGA 61.179 55.000 21.74 21.74 37.24 3.41
699 1002 0.108615 GCGGCTGTGTCAGTACTGAT 60.109 55.000 27.54 0.00 42.18 2.90
700 1003 1.633561 CGGCTGTGTCAGTACTGATG 58.366 55.000 27.54 17.99 42.18 3.07
701 1004 1.067565 CGGCTGTGTCAGTACTGATGT 60.068 52.381 27.54 0.00 42.18 3.06
702 1005 2.610479 CGGCTGTGTCAGTACTGATGTT 60.610 50.000 27.54 0.00 42.18 2.71
703 1006 3.366985 CGGCTGTGTCAGTACTGATGTTA 60.367 47.826 27.54 13.73 42.18 2.41
704 1007 4.566004 GGCTGTGTCAGTACTGATGTTAA 58.434 43.478 27.54 11.60 42.18 2.01
705 1008 4.994852 GGCTGTGTCAGTACTGATGTTAAA 59.005 41.667 27.54 9.79 42.18 1.52
706 1009 5.643777 GGCTGTGTCAGTACTGATGTTAAAT 59.356 40.000 27.54 0.00 42.18 1.40
707 1010 6.816640 GGCTGTGTCAGTACTGATGTTAAATA 59.183 38.462 27.54 8.59 42.18 1.40
708 1011 7.333423 GGCTGTGTCAGTACTGATGTTAAATAA 59.667 37.037 27.54 0.00 42.18 1.40
709 1012 8.717821 GCTGTGTCAGTACTGATGTTAAATAAA 58.282 33.333 27.54 0.00 42.18 1.40
762 1065 2.781431 AATTTCCTGTCCCGGGCCAC 62.781 60.000 18.49 11.07 0.00 5.01
796 1100 2.206750 GTACAAAAGTCTGCGTGGTGA 58.793 47.619 0.00 0.00 0.00 4.02
1021 1326 2.672181 GGAATTTCCCCGGACCCGA 61.672 63.158 10.42 0.00 42.83 5.14
1166 1569 2.568623 AGACACATCACCCCAAACTC 57.431 50.000 0.00 0.00 0.00 3.01
1169 1572 1.073923 ACACATCACCCCAAACTCCTC 59.926 52.381 0.00 0.00 0.00 3.71
1215 1618 4.150897 TCCCCAAATTATCCAGTTCTCG 57.849 45.455 0.00 0.00 0.00 4.04
1219 1622 4.444306 CCCAAATTATCCAGTTCTCGGCTA 60.444 45.833 0.00 0.00 0.00 3.93
1227 1630 2.338500 CAGTTCTCGGCTAGTTGAACC 58.662 52.381 12.25 0.00 39.45 3.62
1230 1633 2.126228 TCGGCTAGTTGAACCGCG 60.126 61.111 0.00 0.00 46.49 6.46
1325 1772 3.584868 AAGGTGTACGCGGTGCTCC 62.585 63.158 12.47 10.25 33.28 4.70
1675 2123 3.484953 TGGTACTGATCAGGGTAAGGT 57.515 47.619 26.08 7.18 0.00 3.50
1719 2167 8.668353 TGTTAGATAGATGCTTGATGTTGAAAC 58.332 33.333 0.00 0.00 0.00 2.78
1780 2242 7.445096 TCAGAGAAATGTTTCATCTGCACTTAA 59.555 33.333 19.14 7.86 39.51 1.85
1811 2273 0.036577 ATGAGTGCTGCTGGTCAGAC 60.037 55.000 0.00 0.00 45.72 3.51
1817 3795 0.610687 GCTGCTGGTCAGACTAAGGT 59.389 55.000 0.00 0.00 45.72 3.50
1865 3845 9.866655 ATTAGATTATGCCTGAGGTTGAAATTA 57.133 29.630 0.00 0.00 0.00 1.40
1871 3851 6.012337 TGCCTGAGGTTGAAATTATGGATA 57.988 37.500 0.00 0.00 0.00 2.59
1875 3855 8.424133 GCCTGAGGTTGAAATTATGGATAAAAT 58.576 33.333 0.00 0.00 0.00 1.82
1906 3886 9.832445 AGTTGTTGTGGACTATATATAACTTGG 57.168 33.333 0.00 0.00 0.00 3.61
1908 3888 9.826574 TTGTTGTGGACTATATATAACTTGGAC 57.173 33.333 0.00 0.00 0.00 4.02
1914 3894 6.807230 GGACTATATATAACTTGGACTGTGCG 59.193 42.308 0.00 0.00 0.00 5.34
1920 3900 2.254546 ACTTGGACTGTGCGAAATGA 57.745 45.000 0.00 0.00 0.00 2.57
2059 4039 1.808411 TGTTGTCGGAAGAATCCAGC 58.192 50.000 0.00 0.00 46.97 4.85
2081 4067 5.412904 AGCTAAAAGACCTTGCATAGTTGTC 59.587 40.000 0.00 0.00 0.00 3.18
2189 4175 0.608640 GACGGTGGTCAATGAGAGGT 59.391 55.000 0.00 0.00 42.91 3.85
2197 4183 3.118075 TGGTCAATGAGAGGTTGTTGTCA 60.118 43.478 0.00 0.00 0.00 3.58
2242 4228 0.371645 CCGATTGCGCTTCTCTTGAC 59.628 55.000 9.73 0.00 35.83 3.18
2281 4267 2.240279 ACAACTACGAGCACTTCCTCT 58.760 47.619 0.00 0.00 0.00 3.69
2420 4406 4.042809 ACCTCAAGGATGACACAATGGTAA 59.957 41.667 2.30 0.00 38.94 2.85
2435 4421 3.383620 TGGTAAAGCAAAATGCCTGTG 57.616 42.857 0.00 0.00 46.52 3.66
2449 4435 1.398390 GCCTGTGTCAAAGCTAATCGG 59.602 52.381 0.00 0.00 0.00 4.18
2530 4517 3.134458 GCCCATAGATTGTTTCGAGGAG 58.866 50.000 0.00 0.00 0.00 3.69
2706 4693 4.757149 GTCAGGTTTCTTGTGCTCATTAGT 59.243 41.667 0.00 0.00 0.00 2.24
2707 4694 4.756642 TCAGGTTTCTTGTGCTCATTAGTG 59.243 41.667 0.00 0.00 0.00 2.74
2708 4695 4.516698 CAGGTTTCTTGTGCTCATTAGTGT 59.483 41.667 0.00 0.00 0.00 3.55
2709 4696 5.009010 CAGGTTTCTTGTGCTCATTAGTGTT 59.991 40.000 0.00 0.00 0.00 3.32
2710 4697 5.009010 AGGTTTCTTGTGCTCATTAGTGTTG 59.991 40.000 0.00 0.00 0.00 3.33
2711 4698 5.221048 GGTTTCTTGTGCTCATTAGTGTTGT 60.221 40.000 0.00 0.00 0.00 3.32
2712 4699 5.673337 TTCTTGTGCTCATTAGTGTTGTC 57.327 39.130 0.00 0.00 0.00 3.18
2799 4786 3.436496 GGAGTATTCGACTGACGGAAAG 58.564 50.000 0.00 0.00 39.06 2.62
2820 4807 1.135717 TGCGAGAAAATGCCATCAACG 60.136 47.619 0.00 0.00 0.00 4.10
2922 4909 1.500783 CCACACCCACCATCCCTTCT 61.501 60.000 0.00 0.00 0.00 2.85
2969 4956 3.942829 TCCATGCAGAGGTAAAGAACAG 58.057 45.455 7.75 0.00 0.00 3.16
3022 5009 6.227298 CAGGTGTCCTGTATATTTCAGTCT 57.773 41.667 7.55 0.00 45.82 3.24
3029 5016 7.038302 TGTCCTGTATATTTCAGTCTTGGACTT 60.038 37.037 0.00 0.00 41.37 3.01
3032 5019 7.989741 CCTGTATATTTCAGTCTTGGACTTGAT 59.010 37.037 0.00 0.00 41.37 2.57
3036 5023 8.868522 ATATTTCAGTCTTGGACTTGATTGAA 57.131 30.769 0.00 0.00 41.37 2.69
3083 5070 1.043116 TGATGGAGCTACCGGTGGAG 61.043 60.000 23.78 11.46 42.61 3.86
3193 5180 9.379770 TCCAAGGTATTTCTATACATCTGATGA 57.620 33.333 23.59 8.24 38.71 2.92
3216 5203 2.567615 ACCAAGTAGTAGAACTGGCTGG 59.432 50.000 0.00 0.00 0.00 4.85
3253 5240 9.410556 GTTTTTGTATCCATGGTCATATTATGC 57.589 33.333 12.58 0.00 0.00 3.14
3285 5272 4.917415 GCCAACATGTTGATCTTGTGTTAC 59.083 41.667 34.76 9.18 42.93 2.50
3394 5381 1.608055 CCTGCATGGTCTTGTCAACA 58.392 50.000 0.00 0.00 0.00 3.33
3602 5589 2.586425 CTGAGAAGGCAAGTCCCAAAA 58.414 47.619 0.00 0.00 34.51 2.44
3606 5593 4.408596 TGAGAAGGCAAGTCCCAAAATTTT 59.591 37.500 0.00 0.00 34.51 1.82
3607 5594 4.707105 AGAAGGCAAGTCCCAAAATTTTG 58.293 39.130 21.65 21.65 37.90 2.44
3608 5595 4.164030 AGAAGGCAAGTCCCAAAATTTTGT 59.836 37.500 25.25 7.87 36.45 2.83
3609 5596 5.365314 AGAAGGCAAGTCCCAAAATTTTGTA 59.635 36.000 25.25 13.11 36.45 2.41
3610 5597 5.213891 AGGCAAGTCCCAAAATTTTGTAG 57.786 39.130 25.25 17.60 36.45 2.74
3611 5598 3.745975 GGCAAGTCCCAAAATTTTGTAGC 59.254 43.478 25.25 18.47 36.45 3.58
3612 5599 4.503123 GGCAAGTCCCAAAATTTTGTAGCT 60.503 41.667 25.25 17.28 36.45 3.32
3622 5610 5.514500 AAATTTTGTAGCTACTCCCTCCA 57.486 39.130 23.84 0.00 0.00 3.86
3629 5617 2.781667 AGCTACTCCCTCCATTCCATT 58.218 47.619 0.00 0.00 0.00 3.16
3634 5622 6.013293 AGCTACTCCCTCCATTCCATTATTAC 60.013 42.308 0.00 0.00 0.00 1.89
3639 5627 5.669904 TCCCTCCATTCCATTATTACTGTCA 59.330 40.000 0.00 0.00 0.00 3.58
3752 5740 6.054941 GGGACTTGAATTGGTTTCAACAATT 58.945 36.000 0.00 0.00 46.80 2.32
3783 5771 4.022589 ACTGTTCTGACAATGGCAATCTTG 60.023 41.667 0.00 0.00 34.85 3.02
3951 5939 1.606885 GGGGTGTCGATCGGTTACCA 61.607 60.000 26.10 11.43 33.10 3.25
4082 6072 2.161410 GCACAGATTATTTGGTCGTGCA 59.839 45.455 6.73 0.00 40.78 4.57
4084 6074 4.675146 GCACAGATTATTTGGTCGTGCATT 60.675 41.667 6.73 0.00 40.78 3.56
4209 6199 4.196626 TGTTAATTGTACACTAGCGGCT 57.803 40.909 7.98 7.98 0.00 5.52
4341 6332 1.113788 TATGGCAAAAGCATGCTCCC 58.886 50.000 22.93 18.41 45.68 4.30
4345 6336 1.895238 CAAAAGCATGCTCCCCTGG 59.105 57.895 22.93 4.05 0.00 4.45
4636 6628 2.290960 GGCTTGAACTATGTGGGACCTT 60.291 50.000 0.00 0.00 0.00 3.50
4643 6635 2.187958 CTATGTGGGACCTTCCTGTCA 58.812 52.381 0.00 0.00 36.57 3.58
5023 7239 4.093998 GTGATGGATTTGTGTGCTAGTCTG 59.906 45.833 0.00 0.00 0.00 3.51
5048 7264 2.354729 GGGTATGGTGTGGCTGCA 59.645 61.111 0.50 0.00 0.00 4.41
5102 7320 4.089983 TCGTTGCGACAACGTTCA 57.910 50.000 29.97 17.30 43.47 3.18
5150 7368 3.056328 GTTCAAGAGCGGGTGCCC 61.056 66.667 0.00 0.00 44.31 5.36
5163 7381 1.599518 GTGCCCACGGTGATCAACA 60.600 57.895 12.13 0.00 0.00 3.33
5214 7446 1.341531 CAGGTTTCCTCACTCGACACT 59.658 52.381 0.00 0.00 0.00 3.55
5247 7479 5.371176 TGGGTGCCAAATCTGGAGTTATATA 59.629 40.000 0.00 0.00 46.92 0.86
5251 7484 5.997746 TGCCAAATCTGGAGTTATATAGCAC 59.002 40.000 0.00 0.00 46.92 4.40
5255 7488 6.650427 AATCTGGAGTTATATAGCACGTCA 57.350 37.500 0.00 0.00 0.00 4.35
5278 7512 0.817229 GTGCTGCCCTGGCTAGATTC 60.817 60.000 9.97 0.00 42.51 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 6.986231 CAGAGCCAAATTTTGTACTCCTTTTT 59.014 34.615 18.53 4.92 34.35 1.94
20 21 4.079253 TCCCAGAGCCAAATTTTGTACTC 58.921 43.478 16.11 16.11 34.15 2.59
49 51 4.394920 TGAATTTACTGTTCATTCGGGAGC 59.605 41.667 6.98 0.00 31.07 4.70
97 104 8.353423 ACTAACATGAGCATCCAAATAAAGTT 57.647 30.769 0.00 0.00 0.00 2.66
99 106 8.218338 AGACTAACATGAGCATCCAAATAAAG 57.782 34.615 0.00 0.00 0.00 1.85
109 116 4.568359 CGCTTGTTAGACTAACATGAGCAT 59.432 41.667 31.95 0.00 45.77 3.79
112 119 4.201628 GCACGCTTGTTAGACTAACATGAG 60.202 45.833 30.83 29.36 46.89 2.90
131 430 4.146961 GTCACATGAAAATTGTCAAGCACG 59.853 41.667 1.55 0.00 0.00 5.34
135 434 4.539870 AGCGTCACATGAAAATTGTCAAG 58.460 39.130 1.55 0.27 0.00 3.02
152 451 2.158058 CCGAGCACTAGTATCTAGCGTC 59.842 54.545 0.00 0.00 0.00 5.19
154 453 2.096169 CACCGAGCACTAGTATCTAGCG 60.096 54.545 0.00 0.00 0.00 4.26
155 454 3.139850 TCACCGAGCACTAGTATCTAGC 58.860 50.000 0.00 0.00 0.00 3.42
157 456 6.519679 TTTTTCACCGAGCACTAGTATCTA 57.480 37.500 0.00 0.00 0.00 1.98
158 457 5.401531 TTTTTCACCGAGCACTAGTATCT 57.598 39.130 0.00 0.00 0.00 1.98
203 506 3.857052 TCGAACGCCAAATGTTATCTCT 58.143 40.909 0.00 0.00 0.00 3.10
204 507 4.508124 AGATCGAACGCCAAATGTTATCTC 59.492 41.667 0.00 0.00 0.00 2.75
207 510 3.938963 ACAGATCGAACGCCAAATGTTAT 59.061 39.130 0.00 0.00 0.00 1.89
211 514 2.900122 AACAGATCGAACGCCAAATG 57.100 45.000 0.00 0.00 0.00 2.32
233 536 0.036765 AGCTATTTGACCGGTGCGAA 60.037 50.000 14.63 10.56 0.00 4.70
234 537 0.036765 AAGCTATTTGACCGGTGCGA 60.037 50.000 14.63 0.00 0.00 5.10
251 554 6.366061 GCAAATGTTTACTGGAAAAGCCTAAG 59.634 38.462 0.00 0.00 37.63 2.18
255 558 4.376146 TGCAAATGTTTACTGGAAAAGCC 58.624 39.130 0.00 0.00 37.10 4.35
262 565 3.823873 TGGTACCTGCAAATGTTTACTGG 59.176 43.478 14.36 1.43 0.00 4.00
265 568 6.451393 TCAAATGGTACCTGCAAATGTTTAC 58.549 36.000 14.36 0.00 0.00 2.01
270 573 4.487948 CACTCAAATGGTACCTGCAAATG 58.512 43.478 14.36 4.14 0.00 2.32
272 575 2.295909 GCACTCAAATGGTACCTGCAAA 59.704 45.455 14.36 0.00 0.00 3.68
289 592 2.816087 GAGATGTGTTCATTGTGGCACT 59.184 45.455 19.83 0.00 34.06 4.40
294 597 7.863877 TGAAAGAAATGAGATGTGTTCATTGTG 59.136 33.333 1.65 0.00 42.73 3.33
372 675 4.834496 ACCAAAAATCCAATCAGCTCTTGA 59.166 37.500 7.05 0.00 40.85 3.02
380 683 8.477419 AAAGACTTCTACCAAAAATCCAATCA 57.523 30.769 0.00 0.00 0.00 2.57
418 721 4.264172 TGTCCACCTAACCATAGCCATTTT 60.264 41.667 0.00 0.00 0.00 1.82
419 722 3.268334 TGTCCACCTAACCATAGCCATTT 59.732 43.478 0.00 0.00 0.00 2.32
420 723 2.849943 TGTCCACCTAACCATAGCCATT 59.150 45.455 0.00 0.00 0.00 3.16
421 724 2.439507 CTGTCCACCTAACCATAGCCAT 59.560 50.000 0.00 0.00 0.00 4.40
422 725 1.837439 CTGTCCACCTAACCATAGCCA 59.163 52.381 0.00 0.00 0.00 4.75
423 726 1.838077 ACTGTCCACCTAACCATAGCC 59.162 52.381 0.00 0.00 0.00 3.93
424 727 2.500098 TCACTGTCCACCTAACCATAGC 59.500 50.000 0.00 0.00 0.00 2.97
425 728 6.295349 GGATATCACTGTCCACCTAACCATAG 60.295 46.154 4.83 0.00 33.05 2.23
426 729 5.542635 GGATATCACTGTCCACCTAACCATA 59.457 44.000 4.83 0.00 33.05 2.74
427 730 4.348168 GGATATCACTGTCCACCTAACCAT 59.652 45.833 4.83 0.00 33.05 3.55
428 731 3.709653 GGATATCACTGTCCACCTAACCA 59.290 47.826 4.83 0.00 33.05 3.67
429 732 3.967987 AGGATATCACTGTCCACCTAACC 59.032 47.826 4.83 0.00 35.19 2.85
430 733 4.649674 TGAGGATATCACTGTCCACCTAAC 59.350 45.833 4.83 0.00 35.19 2.34
431 734 4.878968 TGAGGATATCACTGTCCACCTAA 58.121 43.478 4.83 0.00 35.19 2.69
432 735 4.079154 ACTGAGGATATCACTGTCCACCTA 60.079 45.833 4.83 0.00 35.19 3.08
433 736 3.303938 CTGAGGATATCACTGTCCACCT 58.696 50.000 4.83 0.00 35.19 4.00
434 737 3.034635 ACTGAGGATATCACTGTCCACC 58.965 50.000 4.83 0.00 35.19 4.61
435 738 3.068873 GGACTGAGGATATCACTGTCCAC 59.931 52.174 30.06 17.20 45.89 4.02
436 739 3.300388 GGACTGAGGATATCACTGTCCA 58.700 50.000 30.06 12.82 45.89 4.02
437 740 3.068873 GTGGACTGAGGATATCACTGTCC 59.931 52.174 29.28 29.28 46.40 4.02
438 741 3.068873 GGTGGACTGAGGATATCACTGTC 59.931 52.174 20.17 20.17 34.09 3.51
439 742 3.034635 GGTGGACTGAGGATATCACTGT 58.965 50.000 4.83 8.00 33.22 3.55
440 743 3.303938 AGGTGGACTGAGGATATCACTG 58.696 50.000 4.83 5.02 33.22 3.66
441 744 3.697190 AGGTGGACTGAGGATATCACT 57.303 47.619 4.83 0.00 33.22 3.41
453 756 0.765510 GACTTGAACCCAGGTGGACT 59.234 55.000 0.00 0.00 37.39 3.85
454 757 0.250770 GGACTTGAACCCAGGTGGAC 60.251 60.000 0.00 0.00 37.39 4.02
455 758 0.401395 AGGACTTGAACCCAGGTGGA 60.401 55.000 0.00 0.00 37.39 4.02
456 759 0.250901 CAGGACTTGAACCCAGGTGG 60.251 60.000 0.00 0.00 41.37 4.61
457 760 0.250901 CCAGGACTTGAACCCAGGTG 60.251 60.000 0.00 0.00 32.35 4.00
458 761 0.697854 ACCAGGACTTGAACCCAGGT 60.698 55.000 0.00 0.00 35.12 4.00
459 762 0.250901 CACCAGGACTTGAACCCAGG 60.251 60.000 0.00 0.00 0.00 4.45
460 763 0.890996 GCACCAGGACTTGAACCCAG 60.891 60.000 0.00 0.00 0.00 4.45
461 764 1.150536 GCACCAGGACTTGAACCCA 59.849 57.895 0.00 0.00 0.00 4.51
462 765 0.606673 GAGCACCAGGACTTGAACCC 60.607 60.000 0.00 0.00 0.00 4.11
463 766 0.951040 CGAGCACCAGGACTTGAACC 60.951 60.000 0.00 0.00 0.00 3.62
464 767 1.569479 GCGAGCACCAGGACTTGAAC 61.569 60.000 0.00 0.00 0.00 3.18
465 768 1.301716 GCGAGCACCAGGACTTGAA 60.302 57.895 0.00 0.00 0.00 2.69
466 769 1.830587 ATGCGAGCACCAGGACTTGA 61.831 55.000 0.00 0.00 0.00 3.02
467 770 0.957395 AATGCGAGCACCAGGACTTG 60.957 55.000 0.00 0.00 0.00 3.16
468 771 0.250901 AAATGCGAGCACCAGGACTT 60.251 50.000 0.00 0.00 0.00 3.01
469 772 0.613260 TAAATGCGAGCACCAGGACT 59.387 50.000 0.00 0.00 0.00 3.85
470 773 1.668419 ATAAATGCGAGCACCAGGAC 58.332 50.000 0.00 0.00 0.00 3.85
471 774 2.418368 AATAAATGCGAGCACCAGGA 57.582 45.000 0.00 0.00 0.00 3.86
472 775 3.181397 CAAAATAAATGCGAGCACCAGG 58.819 45.455 0.00 0.00 0.00 4.45
473 776 3.119531 TCCAAAATAAATGCGAGCACCAG 60.120 43.478 0.00 0.00 0.00 4.00
474 777 2.822561 TCCAAAATAAATGCGAGCACCA 59.177 40.909 0.00 0.00 0.00 4.17
475 778 3.502191 TCCAAAATAAATGCGAGCACC 57.498 42.857 0.00 0.00 0.00 5.01
476 779 7.698836 ATAAATCCAAAATAAATGCGAGCAC 57.301 32.000 0.00 0.00 0.00 4.40
477 780 8.715191 AAATAAATCCAAAATAAATGCGAGCA 57.285 26.923 0.00 0.00 0.00 4.26
478 781 8.816144 TGAAATAAATCCAAAATAAATGCGAGC 58.184 29.630 0.00 0.00 0.00 5.03
489 792 8.716909 GCCGAAAATCTTGAAATAAATCCAAAA 58.283 29.630 0.00 0.00 0.00 2.44
490 793 7.062839 CGCCGAAAATCTTGAAATAAATCCAAA 59.937 33.333 0.00 0.00 0.00 3.28
491 794 6.529829 CGCCGAAAATCTTGAAATAAATCCAA 59.470 34.615 0.00 0.00 0.00 3.53
492 795 6.033341 CGCCGAAAATCTTGAAATAAATCCA 58.967 36.000 0.00 0.00 0.00 3.41
493 796 6.262601 TCGCCGAAAATCTTGAAATAAATCC 58.737 36.000 0.00 0.00 0.00 3.01
494 797 7.565789 GCATCGCCGAAAATCTTGAAATAAATC 60.566 37.037 0.00 0.00 0.00 2.17
495 798 6.198966 GCATCGCCGAAAATCTTGAAATAAAT 59.801 34.615 0.00 0.00 0.00 1.40
496 799 5.514914 GCATCGCCGAAAATCTTGAAATAAA 59.485 36.000 0.00 0.00 0.00 1.40
497 800 5.034152 GCATCGCCGAAAATCTTGAAATAA 58.966 37.500 0.00 0.00 0.00 1.40
498 801 4.597079 GCATCGCCGAAAATCTTGAAATA 58.403 39.130 0.00 0.00 0.00 1.40
499 802 3.438360 GCATCGCCGAAAATCTTGAAAT 58.562 40.909 0.00 0.00 0.00 2.17
500 803 2.727607 CGCATCGCCGAAAATCTTGAAA 60.728 45.455 0.00 0.00 0.00 2.69
501 804 1.202020 CGCATCGCCGAAAATCTTGAA 60.202 47.619 0.00 0.00 0.00 2.69
502 805 0.373370 CGCATCGCCGAAAATCTTGA 59.627 50.000 0.00 0.00 0.00 3.02
503 806 2.845600 CGCATCGCCGAAAATCTTG 58.154 52.632 0.00 0.00 0.00 3.02
515 818 2.283780 CTTCCACTGAACGCGCATCG 62.284 60.000 5.73 4.51 45.38 3.84
516 819 1.421485 CTTCCACTGAACGCGCATC 59.579 57.895 5.73 5.66 0.00 3.91
517 820 2.034879 CCTTCCACTGAACGCGCAT 61.035 57.895 5.73 0.00 0.00 4.73
518 821 2.664851 CCTTCCACTGAACGCGCA 60.665 61.111 5.73 0.00 0.00 6.09
519 822 2.357034 TCCTTCCACTGAACGCGC 60.357 61.111 5.73 0.00 0.00 6.86
520 823 1.009389 GTCTCCTTCCACTGAACGCG 61.009 60.000 3.53 3.53 0.00 6.01
521 824 1.009389 CGTCTCCTTCCACTGAACGC 61.009 60.000 0.00 0.00 0.00 4.84
522 825 0.314302 ACGTCTCCTTCCACTGAACG 59.686 55.000 0.00 0.00 0.00 3.95
523 826 2.528041 AACGTCTCCTTCCACTGAAC 57.472 50.000 0.00 0.00 0.00 3.18
524 827 2.224209 GGAAACGTCTCCTTCCACTGAA 60.224 50.000 11.11 0.00 40.79 3.02
525 828 1.343465 GGAAACGTCTCCTTCCACTGA 59.657 52.381 11.11 0.00 40.79 3.41
526 829 1.797025 GGAAACGTCTCCTTCCACTG 58.203 55.000 11.11 0.00 40.79 3.66
540 843 2.536928 GCGCATCATAGTTGACGGAAAC 60.537 50.000 0.30 0.00 33.85 2.78
541 844 1.663643 GCGCATCATAGTTGACGGAAA 59.336 47.619 0.30 0.00 33.85 3.13
542 845 1.286501 GCGCATCATAGTTGACGGAA 58.713 50.000 0.30 0.00 33.85 4.30
543 846 0.529773 GGCGCATCATAGTTGACGGA 60.530 55.000 10.83 0.00 33.85 4.69
544 847 0.530650 AGGCGCATCATAGTTGACGG 60.531 55.000 10.83 0.00 33.85 4.79
545 848 1.787155 GTAGGCGCATCATAGTTGACG 59.213 52.381 10.83 0.00 33.85 4.35
546 849 1.787155 CGTAGGCGCATCATAGTTGAC 59.213 52.381 10.83 0.00 33.85 3.18
547 850 1.269569 CCGTAGGCGCATCATAGTTGA 60.270 52.381 10.83 0.00 46.14 3.18
548 851 1.139989 CCGTAGGCGCATCATAGTTG 58.860 55.000 10.83 0.00 46.14 3.16
549 852 3.588277 CCGTAGGCGCATCATAGTT 57.412 52.632 10.83 0.00 46.14 2.24
562 865 9.582431 TCTTGAGATTTTATAAAGTCACCGTAG 57.418 33.333 19.33 11.77 0.00 3.51
564 867 8.883731 CATCTTGAGATTTTATAAAGTCACCGT 58.116 33.333 19.33 2.55 31.21 4.83
565 868 9.098355 TCATCTTGAGATTTTATAAAGTCACCG 57.902 33.333 19.33 9.53 31.21 4.94
574 877 9.170734 GCTGGCATATCATCTTGAGATTTTATA 57.829 33.333 0.00 0.00 31.21 0.98
575 878 7.889073 AGCTGGCATATCATCTTGAGATTTTAT 59.111 33.333 0.00 0.00 31.21 1.40
576 879 7.229308 AGCTGGCATATCATCTTGAGATTTTA 58.771 34.615 0.00 0.00 31.21 1.52
577 880 6.069331 AGCTGGCATATCATCTTGAGATTTT 58.931 36.000 0.00 0.00 31.21 1.82
578 881 5.632118 AGCTGGCATATCATCTTGAGATTT 58.368 37.500 0.00 0.00 31.21 2.17
579 882 5.221864 TGAGCTGGCATATCATCTTGAGATT 60.222 40.000 0.00 0.00 31.21 2.40
580 883 4.286291 TGAGCTGGCATATCATCTTGAGAT 59.714 41.667 0.00 0.00 34.56 2.75
581 884 3.644738 TGAGCTGGCATATCATCTTGAGA 59.355 43.478 0.00 0.00 0.00 3.27
582 885 4.004196 TGAGCTGGCATATCATCTTGAG 57.996 45.455 0.00 0.00 0.00 3.02
583 886 4.426736 TTGAGCTGGCATATCATCTTGA 57.573 40.909 0.00 0.00 0.00 3.02
584 887 5.004448 AGATTGAGCTGGCATATCATCTTG 58.996 41.667 0.00 0.00 0.00 3.02
585 888 5.244189 AGATTGAGCTGGCATATCATCTT 57.756 39.130 0.00 0.00 0.00 2.40
586 889 4.912317 AGATTGAGCTGGCATATCATCT 57.088 40.909 0.00 5.76 0.00 2.90
587 890 5.390673 CGAAAGATTGAGCTGGCATATCATC 60.391 44.000 0.00 4.02 0.00 2.92
588 891 4.454847 CGAAAGATTGAGCTGGCATATCAT 59.545 41.667 0.00 0.00 0.00 2.45
589 892 3.811497 CGAAAGATTGAGCTGGCATATCA 59.189 43.478 0.00 0.00 0.00 2.15
590 893 3.188048 CCGAAAGATTGAGCTGGCATATC 59.812 47.826 0.00 0.00 0.00 1.63
591 894 3.144506 CCGAAAGATTGAGCTGGCATAT 58.855 45.455 0.00 0.00 0.00 1.78
592 895 2.170397 TCCGAAAGATTGAGCTGGCATA 59.830 45.455 0.00 0.00 0.00 3.14
593 896 1.065199 TCCGAAAGATTGAGCTGGCAT 60.065 47.619 0.00 0.00 0.00 4.40
594 897 0.324614 TCCGAAAGATTGAGCTGGCA 59.675 50.000 0.00 0.00 0.00 4.92
595 898 1.012841 CTCCGAAAGATTGAGCTGGC 58.987 55.000 0.00 0.00 0.00 4.85
596 899 1.661341 CCTCCGAAAGATTGAGCTGG 58.339 55.000 0.00 0.00 0.00 4.85
597 900 1.012841 GCCTCCGAAAGATTGAGCTG 58.987 55.000 0.00 0.00 0.00 4.24
598 901 0.460987 CGCCTCCGAAAGATTGAGCT 60.461 55.000 0.00 0.00 36.29 4.09
599 902 0.741221 ACGCCTCCGAAAGATTGAGC 60.741 55.000 0.00 0.00 38.29 4.26
600 903 1.661112 GAACGCCTCCGAAAGATTGAG 59.339 52.381 0.00 0.00 38.29 3.02
601 904 1.001520 TGAACGCCTCCGAAAGATTGA 59.998 47.619 0.00 0.00 38.29 2.57
602 905 1.438651 TGAACGCCTCCGAAAGATTG 58.561 50.000 0.00 0.00 38.29 2.67
603 906 2.403252 ATGAACGCCTCCGAAAGATT 57.597 45.000 0.00 0.00 38.29 2.40
604 907 2.224066 CCTATGAACGCCTCCGAAAGAT 60.224 50.000 0.00 0.00 38.29 2.40
605 908 1.136305 CCTATGAACGCCTCCGAAAGA 59.864 52.381 0.00 0.00 38.29 2.52
606 909 1.571919 CCTATGAACGCCTCCGAAAG 58.428 55.000 0.00 0.00 38.29 2.62
607 910 0.177141 CCCTATGAACGCCTCCGAAA 59.823 55.000 0.00 0.00 38.29 3.46
608 911 1.682451 CCCCTATGAACGCCTCCGAA 61.682 60.000 0.00 0.00 38.29 4.30
609 912 2.131709 CCCCTATGAACGCCTCCGA 61.132 63.158 0.00 0.00 38.29 4.55
610 913 1.111116 TACCCCTATGAACGCCTCCG 61.111 60.000 0.00 0.00 41.14 4.63
611 914 1.070289 CTTACCCCTATGAACGCCTCC 59.930 57.143 0.00 0.00 0.00 4.30
612 915 1.070289 CCTTACCCCTATGAACGCCTC 59.930 57.143 0.00 0.00 0.00 4.70
613 916 1.129058 CCTTACCCCTATGAACGCCT 58.871 55.000 0.00 0.00 0.00 5.52
614 917 0.835276 ACCTTACCCCTATGAACGCC 59.165 55.000 0.00 0.00 0.00 5.68
615 918 1.208776 ACACCTTACCCCTATGAACGC 59.791 52.381 0.00 0.00 0.00 4.84
616 919 2.901249 CACACCTTACCCCTATGAACG 58.099 52.381 0.00 0.00 0.00 3.95
617 920 2.640184 GCACACCTTACCCCTATGAAC 58.360 52.381 0.00 0.00 0.00 3.18
618 921 1.208535 CGCACACCTTACCCCTATGAA 59.791 52.381 0.00 0.00 0.00 2.57
619 922 0.828022 CGCACACCTTACCCCTATGA 59.172 55.000 0.00 0.00 0.00 2.15
620 923 0.539986 ACGCACACCTTACCCCTATG 59.460 55.000 0.00 0.00 0.00 2.23
621 924 2.163810 TACGCACACCTTACCCCTAT 57.836 50.000 0.00 0.00 0.00 2.57
622 925 1.758280 CATACGCACACCTTACCCCTA 59.242 52.381 0.00 0.00 0.00 3.53
623 926 0.539986 CATACGCACACCTTACCCCT 59.460 55.000 0.00 0.00 0.00 4.79
624 927 0.251073 ACATACGCACACCTTACCCC 59.749 55.000 0.00 0.00 0.00 4.95
625 928 1.365699 CACATACGCACACCTTACCC 58.634 55.000 0.00 0.00 0.00 3.69
626 929 0.725117 GCACATACGCACACCTTACC 59.275 55.000 0.00 0.00 0.00 2.85
627 930 0.368907 CGCACATACGCACACCTTAC 59.631 55.000 0.00 0.00 0.00 2.34
628 931 0.038067 ACGCACATACGCACACCTTA 60.038 50.000 0.00 0.00 36.19 2.69
629 932 0.882927 AACGCACATACGCACACCTT 60.883 50.000 0.00 0.00 36.19 3.50
630 933 1.289109 GAACGCACATACGCACACCT 61.289 55.000 0.00 0.00 36.19 4.00
631 934 1.131826 GAACGCACATACGCACACC 59.868 57.895 0.00 0.00 36.19 4.16
632 935 0.442310 ATGAACGCACATACGCACAC 59.558 50.000 0.00 0.00 36.19 3.82
633 936 1.923864 CTATGAACGCACATACGCACA 59.076 47.619 0.00 0.00 36.19 4.57
634 937 1.257936 CCTATGAACGCACATACGCAC 59.742 52.381 0.00 0.00 36.19 5.34
635 938 1.135333 TCCTATGAACGCACATACGCA 59.865 47.619 0.00 0.00 36.19 5.24
636 939 1.787155 CTCCTATGAACGCACATACGC 59.213 52.381 0.00 0.00 36.19 4.42
637 940 2.789339 CACTCCTATGAACGCACATACG 59.211 50.000 0.00 0.00 39.50 3.06
638 941 4.041740 TCACTCCTATGAACGCACATAC 57.958 45.455 0.00 0.00 0.00 2.39
639 942 3.699538 ACTCACTCCTATGAACGCACATA 59.300 43.478 2.94 2.94 0.00 2.29
640 943 2.497675 ACTCACTCCTATGAACGCACAT 59.502 45.455 0.94 0.94 0.00 3.21
641 944 1.893137 ACTCACTCCTATGAACGCACA 59.107 47.619 0.00 0.00 0.00 4.57
642 945 2.263077 CACTCACTCCTATGAACGCAC 58.737 52.381 0.00 0.00 0.00 5.34
643 946 1.893137 ACACTCACTCCTATGAACGCA 59.107 47.619 0.00 0.00 0.00 5.24
644 947 2.656560 ACACTCACTCCTATGAACGC 57.343 50.000 0.00 0.00 0.00 4.84
645 948 3.681855 CGTACACTCACTCCTATGAACG 58.318 50.000 0.00 0.00 0.00 3.95
646 949 3.436496 GCGTACACTCACTCCTATGAAC 58.564 50.000 0.00 0.00 0.00 3.18
647 950 2.096980 CGCGTACACTCACTCCTATGAA 59.903 50.000 0.00 0.00 0.00 2.57
648 951 1.669265 CGCGTACACTCACTCCTATGA 59.331 52.381 0.00 0.00 0.00 2.15
649 952 1.860399 GCGCGTACACTCACTCCTATG 60.860 57.143 8.43 0.00 0.00 2.23
650 953 0.381089 GCGCGTACACTCACTCCTAT 59.619 55.000 8.43 0.00 0.00 2.57
651 954 1.798735 GCGCGTACACTCACTCCTA 59.201 57.895 8.43 0.00 0.00 2.94
652 955 2.567049 GCGCGTACACTCACTCCT 59.433 61.111 8.43 0.00 0.00 3.69
653 956 2.244436 TACGCGCGTACACTCACTCC 62.244 60.000 36.55 0.00 0.00 3.85
654 957 0.247974 ATACGCGCGTACACTCACTC 60.248 55.000 41.36 0.00 33.01 3.51
655 958 1.009078 TATACGCGCGTACACTCACT 58.991 50.000 41.36 26.73 33.01 3.41
656 959 2.028287 ATATACGCGCGTACACTCAC 57.972 50.000 41.36 0.00 33.01 3.51
657 960 3.432933 TCATATATACGCGCGTACACTCA 59.567 43.478 41.36 23.80 33.01 3.41
658 961 3.994789 TCATATATACGCGCGTACACTC 58.005 45.455 41.36 0.00 33.01 3.51
659 962 3.727079 GCTCATATATACGCGCGTACACT 60.727 47.826 41.36 28.86 33.01 3.55
660 963 2.525096 GCTCATATATACGCGCGTACAC 59.475 50.000 41.36 21.05 33.01 2.90
661 964 2.777494 GCTCATATATACGCGCGTACA 58.223 47.619 41.36 33.50 33.01 2.90
662 965 1.766301 CGCTCATATATACGCGCGTAC 59.234 52.381 41.36 25.30 39.11 3.67
663 966 1.267682 CCGCTCATATATACGCGCGTA 60.268 52.381 40.65 40.65 43.84 4.42
664 967 0.522705 CCGCTCATATATACGCGCGT 60.523 55.000 39.05 39.05 43.84 6.01
665 968 1.798368 GCCGCTCATATATACGCGCG 61.798 60.000 30.96 30.96 43.84 6.86
666 969 0.525668 AGCCGCTCATATATACGCGC 60.526 55.000 5.73 0.00 43.84 6.86
667 970 1.191944 CAGCCGCTCATATATACGCG 58.808 55.000 3.53 3.53 44.69 6.01
668 971 1.920574 CACAGCCGCTCATATATACGC 59.079 52.381 0.00 0.00 0.00 4.42
669 972 3.172050 GACACAGCCGCTCATATATACG 58.828 50.000 0.00 0.00 0.00 3.06
670 973 4.169508 CTGACACAGCCGCTCATATATAC 58.830 47.826 0.00 0.00 0.00 1.47
671 974 3.826729 ACTGACACAGCCGCTCATATATA 59.173 43.478 0.00 0.00 34.37 0.86
672 975 2.630098 ACTGACACAGCCGCTCATATAT 59.370 45.455 0.00 0.00 34.37 0.86
673 976 2.031870 ACTGACACAGCCGCTCATATA 58.968 47.619 0.00 0.00 34.37 0.86
674 977 0.826715 ACTGACACAGCCGCTCATAT 59.173 50.000 0.00 0.00 34.37 1.78
675 978 1.134367 GTACTGACACAGCCGCTCATA 59.866 52.381 0.00 0.00 34.37 2.15
676 979 0.108615 GTACTGACACAGCCGCTCAT 60.109 55.000 0.00 0.00 34.37 2.90
677 980 1.179174 AGTACTGACACAGCCGCTCA 61.179 55.000 0.00 0.00 34.37 4.26
678 981 0.734253 CAGTACTGACACAGCCGCTC 60.734 60.000 18.45 0.00 34.37 5.03
679 982 1.179174 TCAGTACTGACACAGCCGCT 61.179 55.000 21.74 0.00 34.37 5.52
680 983 0.108615 ATCAGTACTGACACAGCCGC 60.109 55.000 27.41 0.00 43.11 6.53
681 984 1.067565 ACATCAGTACTGACACAGCCG 60.068 52.381 27.41 12.03 43.11 5.52
682 985 2.751166 ACATCAGTACTGACACAGCC 57.249 50.000 27.41 0.00 43.11 4.85
683 986 6.727824 ATTTAACATCAGTACTGACACAGC 57.272 37.500 27.41 0.00 43.11 4.40
709 1012 9.700831 AGGCACTTCTACATTCCTTTTATTTAT 57.299 29.630 0.00 0.00 27.25 1.40
710 1013 9.174166 GAGGCACTTCTACATTCCTTTTATTTA 57.826 33.333 0.00 0.00 41.55 1.40
723 1026 1.186200 ATCAGCGAGGCACTTCTACA 58.814 50.000 0.00 0.00 41.55 2.74
762 1065 4.401202 ACTTTTGTACCCAGTGTTTCTTGG 59.599 41.667 0.00 0.00 35.36 3.61
778 1081 1.014352 GTCACCACGCAGACTTTTGT 58.986 50.000 0.00 0.00 0.00 2.83
912 1216 1.196808 GATTTTTCGCGGCTGAAGTGA 59.803 47.619 6.13 0.00 0.00 3.41
934 1238 4.507756 GGAATATTTTTGCCGGAAATCAGC 59.492 41.667 5.05 0.00 0.00 4.26
954 1258 1.278985 AGATGTGAGCGTGGAATGGAA 59.721 47.619 0.00 0.00 0.00 3.53
1147 1453 1.073923 GGAGTTTGGGGTGATGTGTCT 59.926 52.381 0.00 0.00 0.00 3.41
1148 1454 1.073923 AGGAGTTTGGGGTGATGTGTC 59.926 52.381 0.00 0.00 0.00 3.67
1149 1455 1.073923 GAGGAGTTTGGGGTGATGTGT 59.926 52.381 0.00 0.00 0.00 3.72
1150 1456 1.614317 GGAGGAGTTTGGGGTGATGTG 60.614 57.143 0.00 0.00 0.00 3.21
1151 1457 0.698818 GGAGGAGTTTGGGGTGATGT 59.301 55.000 0.00 0.00 0.00 3.06
1153 1459 0.995024 CTGGAGGAGTTTGGGGTGAT 59.005 55.000 0.00 0.00 0.00 3.06
1154 1460 0.104672 TCTGGAGGAGTTTGGGGTGA 60.105 55.000 0.00 0.00 0.00 4.02
1166 1569 6.593382 CACTAGAAATTCAGAAACTCTGGAGG 59.407 42.308 12.55 4.11 44.39 4.30
1169 1572 9.092876 GATACACTAGAAATTCAGAAACTCTGG 57.907 37.037 0.00 7.00 44.39 3.86
1215 1618 3.497031 GGCGCGGTTCAACTAGCC 61.497 66.667 8.83 5.87 37.61 3.93
1325 1772 1.663379 TAGTCGGCACTGTCATCCCG 61.663 60.000 0.00 0.00 41.97 5.14
1629 2077 3.096489 GGTGAAATTCAGCAAGTGCAA 57.904 42.857 18.93 0.00 43.79 4.08
1675 2123 8.742125 ATCTAACATCCATTGTTCCCTCTATA 57.258 34.615 0.00 0.00 45.55 1.31
1766 2227 7.884257 TGTGAAATTCATTAAGTGCAGATGAA 58.116 30.769 13.70 13.70 42.14 2.57
1801 2263 9.780186 ATTTATTTATACCTTAGTCTGACCAGC 57.220 33.333 3.76 0.00 0.00 4.85
1831 3810 9.284131 ACCTCAGGCATAATCTAATATCCATTA 57.716 33.333 0.00 0.00 0.00 1.90
1846 3825 6.012337 TCCATAATTTCAACCTCAGGCATA 57.988 37.500 0.00 0.00 0.00 3.14
1865 3845 9.747898 TCCACAACAACTAGTTATTTTATCCAT 57.252 29.630 8.04 0.00 38.74 3.41
1886 3866 8.638873 CACAGTCCAAGTTATATATAGTCCACA 58.361 37.037 0.00 0.00 0.00 4.17
1887 3867 7.599245 GCACAGTCCAAGTTATATATAGTCCAC 59.401 40.741 0.00 0.00 0.00 4.02
1888 3868 7.523216 CGCACAGTCCAAGTTATATATAGTCCA 60.523 40.741 0.00 0.00 0.00 4.02
1903 3883 3.856638 GCATTTCATTTCGCACAGTCCAA 60.857 43.478 0.00 0.00 0.00 3.53
1906 3886 2.912967 CTGCATTTCATTTCGCACAGTC 59.087 45.455 0.00 0.00 0.00 3.51
1908 3888 2.256174 CCTGCATTTCATTTCGCACAG 58.744 47.619 0.00 0.00 0.00 3.66
1914 3894 2.562298 TCCACCACCTGCATTTCATTTC 59.438 45.455 0.00 0.00 0.00 2.17
1920 3900 0.188342 AACCTCCACCACCTGCATTT 59.812 50.000 0.00 0.00 0.00 2.32
2059 4039 6.128172 CCAGACAACTATGCAAGGTCTTTTAG 60.128 42.308 0.00 0.00 36.74 1.85
2081 4067 4.073293 ACAGTTAACAGTGAGGTTCCAG 57.927 45.455 8.61 0.00 32.29 3.86
2189 4175 0.955428 GCGCTCCCATCTGACAACAA 60.955 55.000 0.00 0.00 0.00 2.83
2420 4406 3.460103 CTTTGACACAGGCATTTTGCTT 58.540 40.909 0.00 0.00 44.28 3.91
2435 4421 4.648970 GCAAACTACCGATTAGCTTTGAC 58.351 43.478 0.00 8.54 34.26 3.18
2449 4435 5.983720 ACATGTATCTATGACCGCAAACTAC 59.016 40.000 0.00 0.00 0.00 2.73
2488 4475 1.001746 ACCTGAGAGCACACACATGAG 59.998 52.381 0.00 0.00 0.00 2.90
2530 4517 0.865769 CGCGGAATATTACCCACTGC 59.134 55.000 0.00 0.00 0.00 4.40
2695 4682 4.273480 ACAACAGACAACACTAATGAGCAC 59.727 41.667 0.00 0.00 0.00 4.40
2710 4697 7.132694 TCATCATTTACATGTCACAACAGAC 57.867 36.000 0.00 0.00 39.20 3.51
2711 4698 7.391275 ACATCATCATTTACATGTCACAACAGA 59.609 33.333 0.00 0.00 39.20 3.41
2712 4699 7.532571 ACATCATCATTTACATGTCACAACAG 58.467 34.615 0.00 0.00 39.20 3.16
2799 4786 2.253603 GTTGATGGCATTTTCTCGCAC 58.746 47.619 0.00 0.00 0.00 5.34
2820 4807 1.225854 GCGCACGTTGAGCATCTTC 60.226 57.895 0.30 0.00 42.85 2.87
2904 4891 0.035056 GAGAAGGGATGGTGGGTGTG 60.035 60.000 0.00 0.00 0.00 3.82
2922 4909 3.333219 CCTGAAGGGGGCAGCAGA 61.333 66.667 0.00 0.00 32.06 4.26
2985 4972 1.339055 ACACCTGCACAATAGCACGAT 60.339 47.619 0.00 0.00 40.11 3.73
2987 4974 0.443869 GACACCTGCACAATAGCACG 59.556 55.000 0.00 0.00 40.11 5.34
3021 5008 9.784680 CAAGAAGAATATTCAATCAAGTCCAAG 57.215 33.333 17.56 0.00 0.00 3.61
3022 5009 9.519191 TCAAGAAGAATATTCAATCAAGTCCAA 57.481 29.630 17.56 0.00 0.00 3.53
3051 5038 4.401022 AGCTCCATCACAATCTGTTGAAA 58.599 39.130 0.00 0.00 38.71 2.69
3054 5041 3.624861 GGTAGCTCCATCACAATCTGTTG 59.375 47.826 0.00 0.00 37.48 3.33
3062 5049 1.613317 CCACCGGTAGCTCCATCACA 61.613 60.000 6.87 0.00 35.57 3.58
3083 5070 4.219288 AGATTGTCCAAAAGAAGTCCATGC 59.781 41.667 0.00 0.00 0.00 4.06
3193 5180 3.006967 CAGCCAGTTCTACTACTTGGTGT 59.993 47.826 0.00 0.00 35.65 4.16
3253 5240 0.390124 AACATGTTGGCTTGCACAGG 59.610 50.000 11.07 0.00 0.00 4.00
3262 5249 3.648339 ACACAAGATCAACATGTTGGC 57.352 42.857 32.54 25.01 37.55 4.52
3285 5272 7.172190 TCAAGAACTTCACAAAGCTGAGAATAG 59.828 37.037 0.00 0.00 35.81 1.73
3439 5426 0.799534 GGAGATGCGTTGCACATTGC 60.800 55.000 0.00 0.00 43.04 3.56
3602 5589 5.398012 GGAATGGAGGGAGTAGCTACAAAAT 60.398 44.000 25.28 8.85 0.00 1.82
3606 5593 2.023404 TGGAATGGAGGGAGTAGCTACA 60.023 50.000 25.28 3.50 0.00 2.74
3607 5594 2.679082 TGGAATGGAGGGAGTAGCTAC 58.321 52.381 16.43 16.43 0.00 3.58
3608 5595 3.637821 ATGGAATGGAGGGAGTAGCTA 57.362 47.619 0.00 0.00 0.00 3.32
3609 5596 2.503869 ATGGAATGGAGGGAGTAGCT 57.496 50.000 0.00 0.00 0.00 3.32
3610 5597 4.917906 ATAATGGAATGGAGGGAGTAGC 57.082 45.455 0.00 0.00 0.00 3.58
3611 5598 7.016661 ACAGTAATAATGGAATGGAGGGAGTAG 59.983 40.741 0.00 0.00 0.00 2.57
3612 5599 6.849697 ACAGTAATAATGGAATGGAGGGAGTA 59.150 38.462 0.00 0.00 0.00 2.59
3634 5622 9.003658 AGTTATGAAGAACTAAAACCATGACAG 57.996 33.333 0.00 0.00 37.90 3.51
3695 5683 9.382244 CTTAGTTTGCAAATGACAGTTACTAAC 57.618 33.333 16.21 5.42 0.00 2.34
3752 5740 5.056480 CCATTGTCAGAACAGTTAGACACA 58.944 41.667 16.71 10.79 40.37 3.72
3783 5771 0.108424 AGACCTGCAGAAGATCGTGC 60.108 55.000 17.39 9.94 40.29 5.34
3951 5939 4.083110 CCACTCTCAATTTCGTTGCTGAAT 60.083 41.667 0.00 0.00 37.74 2.57
4046 6036 0.177836 TGTGCATACGGGTCATCTGG 59.822 55.000 0.00 0.00 0.00 3.86
4082 6072 1.865788 ATGAACAACCGCGCTGCAAT 61.866 50.000 5.56 0.00 0.00 3.56
4084 6074 2.965147 GATGAACAACCGCGCTGCA 61.965 57.895 5.56 0.00 0.00 4.41
4341 6332 8.248904 TGATTATCATAAAACCATTTCCCAGG 57.751 34.615 0.00 0.00 0.00 4.45
4411 6402 6.183360 GCTTTCGCCTAAAACCCTTTACATAT 60.183 38.462 0.00 0.00 0.00 1.78
4636 6628 6.040391 CCCTTAACTTTCAAAACATGACAGGA 59.960 38.462 0.00 0.00 39.66 3.86
4643 6635 7.342026 ACTTCACTCCCTTAACTTTCAAAACAT 59.658 33.333 0.00 0.00 0.00 2.71
4737 6930 5.684704 TGGCTGTATCCTTTATCAAAGAGG 58.315 41.667 0.23 0.00 41.02 3.69
4744 6937 6.942532 TGTCAAATGGCTGTATCCTTTATC 57.057 37.500 0.00 0.00 0.00 1.75
4750 6943 7.333528 TCTAAAATGTCAAATGGCTGTATCC 57.666 36.000 0.00 0.00 0.00 2.59
5023 7239 2.159382 CCACACCATACCCACTTGAAC 58.841 52.381 0.00 0.00 0.00 3.18
5119 7337 3.141398 TCTTGAACAACCTCATGTGCTC 58.859 45.455 0.00 0.00 32.81 4.26
5150 7368 2.033747 GCATACGATGTTGATCACCGTG 60.034 50.000 16.78 0.00 46.69 4.94
5163 7381 4.574421 TTCAACCATGATTTCGCATACGAT 59.426 37.500 0.00 0.00 41.10 3.73
5168 7386 3.758023 TGTCTTCAACCATGATTTCGCAT 59.242 39.130 0.00 0.00 34.96 4.73
5169 7387 3.145286 TGTCTTCAACCATGATTTCGCA 58.855 40.909 0.00 0.00 34.96 5.10
5170 7388 3.189287 ACTGTCTTCAACCATGATTTCGC 59.811 43.478 0.00 0.00 34.96 4.70
5175 7407 4.202503 ACCTGAACTGTCTTCAACCATGAT 60.203 41.667 0.00 0.00 34.96 2.45
5223 7455 0.482446 AACTCCAGATTTGGCACCCA 59.518 50.000 0.00 0.00 44.63 4.51
5251 7484 2.281761 AGGGCAGCACCTTTGACG 60.282 61.111 0.00 0.00 37.69 4.35
5255 7488 2.490270 CTAGCCAGGGCAGCACCTTT 62.490 60.000 13.63 0.00 44.88 3.11
5278 7512 3.679389 AGGTGAAGCCATGTAGTTGAAG 58.321 45.455 0.00 0.00 40.61 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.