Multiple sequence alignment - TraesCS3D01G512900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G512900 chr3D 100.000 3333 0 0 1 3333 597266932 597263600 0.000000e+00 6156
1 TraesCS3D01G512900 chr3D 89.902 1525 118 18 983 2494 596993903 596995404 0.000000e+00 1930
2 TraesCS3D01G512900 chr2A 93.964 1988 94 14 874 2851 605310807 605312778 0.000000e+00 2983
3 TraesCS3D01G512900 chr2A 95.622 434 19 0 89 522 605310031 605310464 0.000000e+00 697
4 TraesCS3D01G512900 chr2A 93.909 197 12 0 582 778 605310460 605310656 6.990000e-77 298
5 TraesCS3D01G512900 chr2A 97.917 96 2 0 1 96 605307124 605307219 2.060000e-37 167
6 TraesCS3D01G512900 chr3B 91.622 1683 115 15 874 2546 804113573 804111907 0.000000e+00 2303
7 TraesCS3D01G512900 chr3B 88.648 1524 137 17 984 2494 803513072 803511572 0.000000e+00 1823
8 TraesCS3D01G512900 chr3B 90.531 961 72 9 1544 2494 803334573 803333622 0.000000e+00 1253
9 TraesCS3D01G512900 chr3B 90.427 961 74 8 1544 2494 803364464 803363512 0.000000e+00 1249
10 TraesCS3D01G512900 chr3B 90.010 961 78 8 1544 2494 803415330 803414378 0.000000e+00 1227
11 TraesCS3D01G512900 chr3B 94.904 314 11 4 2538 2851 804111724 804111416 1.390000e-133 486
12 TraesCS3D01G512900 chr3B 87.277 393 29 3 289 660 804114118 804113726 2.380000e-116 429
13 TraesCS3D01G512900 chr3B 88.791 339 34 2 1114 1449 803473087 803472750 2.390000e-111 412
14 TraesCS3D01G512900 chr3B 91.016 256 22 1 2584 2839 803540646 803540900 8.850000e-91 344
15 TraesCS3D01G512900 chr3B 93.069 101 5 1 778 878 804113710 804113612 2.680000e-31 147
16 TraesCS3D01G512900 chr3A 88.120 1532 137 21 1015 2517 727180666 727182181 0.000000e+00 1779
17 TraesCS3D01G512900 chr3A 90.710 915 50 11 960 1874 727365357 727366236 0.000000e+00 1186
18 TraesCS3D01G512900 chr3A 89.037 976 65 15 1 945 727364077 727365041 0.000000e+00 1171
19 TraesCS3D01G512900 chr4B 83.789 1610 190 37 995 2558 86359290 86360874 0.000000e+00 1461
20 TraesCS3D01G512900 chr4A 83.405 1621 194 37 996 2559 538906768 538905166 0.000000e+00 1434
21 TraesCS3D01G512900 chrUn 90.531 961 73 8 1544 2494 291468980 291469932 0.000000e+00 1254
22 TraesCS3D01G512900 chrUn 90.531 961 72 9 1544 2494 303788932 303789883 0.000000e+00 1253
23 TraesCS3D01G512900 chrUn 90.531 961 72 9 1544 2494 308985237 308986188 0.000000e+00 1253
24 TraesCS3D01G512900 chrUn 91.919 594 38 4 1903 2494 322735394 322735979 0.000000e+00 822
25 TraesCS3D01G512900 chr6D 92.373 472 31 3 2864 3333 461433487 461433019 0.000000e+00 667
26 TraesCS3D01G512900 chr6D 89.914 466 45 2 2868 3333 470113339 470113802 1.710000e-167 599
27 TraesCS3D01G512900 chr6D 89.362 470 45 3 2864 3331 12056145 12055679 1.330000e-163 586
28 TraesCS3D01G512900 chr5D 88.584 473 46 3 2864 3333 13809498 13809031 4.830000e-158 568
29 TraesCS3D01G512900 chr7D 81.206 431 70 3 1 423 472686484 472686057 1.480000e-88 337
30 TraesCS3D01G512900 chr7B 79.908 433 76 3 1 425 496667709 496667280 1.160000e-79 307
31 TraesCS3D01G512900 chr7B 88.382 241 24 3 426 665 496667229 496666992 1.510000e-73 287
32 TraesCS3D01G512900 chr6A 89.103 156 17 0 2868 3023 602171379 602171534 9.440000e-46 195
33 TraesCS3D01G512900 chr6A 92.105 114 7 2 3017 3129 602180305 602180417 3.440000e-35 159
34 TraesCS3D01G512900 chr6B 88.073 109 13 0 300 408 715568766 715568874 2.700000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G512900 chr3D 597263600 597266932 3332 True 6156.00 6156 100.0000 1 3333 1 chr3D.!!$R1 3332
1 TraesCS3D01G512900 chr3D 596993903 596995404 1501 False 1930.00 1930 89.9020 983 2494 1 chr3D.!!$F1 1511
2 TraesCS3D01G512900 chr2A 605307124 605312778 5654 False 1036.25 2983 95.3530 1 2851 4 chr2A.!!$F1 2850
3 TraesCS3D01G512900 chr3B 803511572 803513072 1500 True 1823.00 1823 88.6480 984 2494 1 chr3B.!!$R5 1510
4 TraesCS3D01G512900 chr3B 803333622 803334573 951 True 1253.00 1253 90.5310 1544 2494 1 chr3B.!!$R1 950
5 TraesCS3D01G512900 chr3B 803363512 803364464 952 True 1249.00 1249 90.4270 1544 2494 1 chr3B.!!$R2 950
6 TraesCS3D01G512900 chr3B 803414378 803415330 952 True 1227.00 1227 90.0100 1544 2494 1 chr3B.!!$R3 950
7 TraesCS3D01G512900 chr3B 804111416 804114118 2702 True 841.25 2303 91.7180 289 2851 4 chr3B.!!$R6 2562
8 TraesCS3D01G512900 chr3A 727180666 727182181 1515 False 1779.00 1779 88.1200 1015 2517 1 chr3A.!!$F1 1502
9 TraesCS3D01G512900 chr3A 727364077 727366236 2159 False 1178.50 1186 89.8735 1 1874 2 chr3A.!!$F2 1873
10 TraesCS3D01G512900 chr4B 86359290 86360874 1584 False 1461.00 1461 83.7890 995 2558 1 chr4B.!!$F1 1563
11 TraesCS3D01G512900 chr4A 538905166 538906768 1602 True 1434.00 1434 83.4050 996 2559 1 chr4A.!!$R1 1563
12 TraesCS3D01G512900 chrUn 291468980 291469932 952 False 1254.00 1254 90.5310 1544 2494 1 chrUn.!!$F1 950
13 TraesCS3D01G512900 chrUn 303788932 303789883 951 False 1253.00 1253 90.5310 1544 2494 1 chrUn.!!$F2 950
14 TraesCS3D01G512900 chrUn 308985237 308986188 951 False 1253.00 1253 90.5310 1544 2494 1 chrUn.!!$F3 950
15 TraesCS3D01G512900 chrUn 322735394 322735979 585 False 822.00 822 91.9190 1903 2494 1 chrUn.!!$F4 591
16 TraesCS3D01G512900 chr7B 496666992 496667709 717 True 297.00 307 84.1450 1 665 2 chr7B.!!$R1 664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
913 3875 1.067846 TGGGACAGTTCGTTCAGATCG 60.068 52.381 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2887 6457 0.110486 GTGGGCTCACCTTTCTGGAA 59.89 55.0 5.01 0.0 41.11 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
164 2992 1.340088 AATGTTGCAATGGCTGTGGA 58.660 45.000 0.59 0.00 41.91 4.02
177 3005 2.432628 GTGGAGGGTGCTTCGACG 60.433 66.667 0.00 0.00 0.00 5.12
522 3401 3.853355 ATCAGGACTCCATAAGCTTGG 57.147 47.619 9.86 3.15 38.18 3.61
550 3429 5.096849 ACCAAATTCAACAAACACGTACAC 58.903 37.500 0.00 0.00 0.00 2.90
565 3444 5.867716 ACACGTACACTCAAGAATATGTTCC 59.132 40.000 0.00 0.00 34.81 3.62
592 3473 2.356382 CCCGTTTAGTGCTTGTGTTGAA 59.644 45.455 0.00 0.00 0.00 2.69
602 3483 4.622740 GTGCTTGTGTTGAAATTATCTGCC 59.377 41.667 0.00 0.00 0.00 4.85
711 3592 2.782222 GGAGTCGCGATGGGTAGCA 61.782 63.158 14.06 0.00 0.00 3.49
717 3598 2.030540 GTCGCGATGGGTAGCATAACTA 60.031 50.000 14.06 0.00 0.00 2.24
750 3632 3.858868 GAGACGCTCCGCACCACAA 62.859 63.158 0.00 0.00 0.00 3.33
754 3636 2.034879 CGCTCCGCACCACAAGATT 61.035 57.895 0.00 0.00 0.00 2.40
824 3732 5.740290 TTCCTATGGAAATCGGATCCTAC 57.260 43.478 10.75 0.00 38.93 3.18
913 3875 1.067846 TGGGACAGTTCGTTCAGATCG 60.068 52.381 0.00 0.00 0.00 3.69
1450 4728 4.743018 CCAGGGTGGGTGATGAAC 57.257 61.111 0.00 0.00 32.67 3.18
1534 4829 2.962089 GCGTTGGCCATTAGCAATG 58.038 52.632 6.09 0.00 46.50 2.82
1535 4830 0.173255 GCGTTGGCCATTAGCAATGT 59.827 50.000 6.09 0.00 46.50 2.71
1536 4831 1.912001 CGTTGGCCATTAGCAATGTG 58.088 50.000 6.09 2.49 46.50 3.21
1641 4936 2.456119 GGCCATCTTCGACTGCACG 61.456 63.158 0.00 0.00 0.00 5.34
1696 4991 2.123511 CCAACAGCCCCAACACCA 60.124 61.111 0.00 0.00 0.00 4.17
1731 5026 3.680786 CACTCCCGCCACGTGAGA 61.681 66.667 19.30 7.23 35.15 3.27
1755 5050 1.600636 CAACACCACCATCGGCACT 60.601 57.895 0.00 0.00 0.00 4.40
1887 5187 7.459795 TCATCCATTATTGTGTTTGCTTGTA 57.540 32.000 0.00 0.00 0.00 2.41
1976 5287 1.899437 GATGGCAGGACGGTGAGGAA 61.899 60.000 0.00 0.00 0.00 3.36
2045 5356 2.514824 GGCCTGCGGATCAAGACC 60.515 66.667 0.00 0.00 0.00 3.85
2192 5511 0.249073 CGTCTCCTTCCCTACATGCG 60.249 60.000 0.00 0.00 0.00 4.73
2206 5550 2.972625 ACATGCGTGCAACTACTACAT 58.027 42.857 5.64 0.00 31.75 2.29
2710 6280 7.174253 TGAGACATAGTTAAACCACAATCAACC 59.826 37.037 0.00 0.00 0.00 3.77
2723 6293 7.734942 ACCACAATCAACCTCATAAATTTTGT 58.265 30.769 0.00 0.00 0.00 2.83
2737 6307 8.037758 TCATAAATTTTGTGTGGTTGTTCTTGT 58.962 29.630 0.00 0.00 0.00 3.16
2822 6392 9.419297 GATGGTTATAATTTGTGAGCGTATAGA 57.581 33.333 0.00 0.00 0.00 1.98
2851 6421 2.099427 GAGTCTGGATGTCCGTCTAACC 59.901 54.545 0.00 0.00 39.43 2.85
2852 6422 1.822990 GTCTGGATGTCCGTCTAACCA 59.177 52.381 0.00 0.00 39.43 3.67
2853 6423 2.431057 GTCTGGATGTCCGTCTAACCAT 59.569 50.000 0.00 0.00 39.43 3.55
2854 6424 2.430694 TCTGGATGTCCGTCTAACCATG 59.569 50.000 0.00 0.00 39.43 3.66
2855 6425 1.484653 TGGATGTCCGTCTAACCATGG 59.515 52.381 11.19 11.19 39.43 3.66
2856 6426 1.202651 GGATGTCCGTCTAACCATGGG 60.203 57.143 18.09 0.00 0.00 4.00
2857 6427 0.180406 ATGTCCGTCTAACCATGGGC 59.820 55.000 18.09 0.00 0.00 5.36
2858 6428 0.907704 TGTCCGTCTAACCATGGGCT 60.908 55.000 18.09 5.17 0.00 5.19
2859 6429 0.252197 GTCCGTCTAACCATGGGCTT 59.748 55.000 18.09 4.61 0.00 4.35
2860 6430 1.483415 GTCCGTCTAACCATGGGCTTA 59.517 52.381 18.09 5.66 0.00 3.09
2861 6431 1.483415 TCCGTCTAACCATGGGCTTAC 59.517 52.381 18.09 8.02 0.00 2.34
2862 6432 1.474498 CCGTCTAACCATGGGCTTACC 60.474 57.143 18.09 0.00 40.81 2.85
2863 6433 1.805120 CGTCTAACCATGGGCTTACCG 60.805 57.143 18.09 7.12 44.64 4.02
2864 6434 0.179468 TCTAACCATGGGCTTACCGC 59.821 55.000 18.09 0.00 44.64 5.68
2865 6435 1.153329 TAACCATGGGCTTACCGCG 60.153 57.895 18.09 0.00 44.64 6.46
2866 6436 1.901654 TAACCATGGGCTTACCGCGT 61.902 55.000 18.09 0.00 44.64 6.01
2867 6437 2.895372 CCATGGGCTTACCGCGTC 60.895 66.667 2.85 0.00 44.64 5.19
2868 6438 2.895372 CATGGGCTTACCGCGTCC 60.895 66.667 4.92 0.00 44.64 4.79
2869 6439 3.395702 ATGGGCTTACCGCGTCCA 61.396 61.111 4.92 3.20 44.64 4.02
2870 6440 3.385749 ATGGGCTTACCGCGTCCAG 62.386 63.158 4.92 0.00 44.64 3.86
2871 6441 3.766691 GGGCTTACCGCGTCCAGA 61.767 66.667 4.92 0.00 40.44 3.86
2872 6442 2.202756 GGCTTACCGCGTCCAGAG 60.203 66.667 4.92 0.00 40.44 3.35
2873 6443 2.886124 GCTTACCGCGTCCAGAGC 60.886 66.667 4.92 3.33 0.00 4.09
2874 6444 2.202756 CTTACCGCGTCCAGAGCC 60.203 66.667 4.92 0.00 0.00 4.70
2875 6445 3.718210 CTTACCGCGTCCAGAGCCC 62.718 68.421 4.92 0.00 0.00 5.19
2879 6449 4.379243 CGCGTCCAGAGCCCAAGT 62.379 66.667 0.00 0.00 0.00 3.16
2880 6450 2.978824 GCGTCCAGAGCCCAAGTA 59.021 61.111 0.00 0.00 0.00 2.24
2881 6451 1.295423 GCGTCCAGAGCCCAAGTAA 59.705 57.895 0.00 0.00 0.00 2.24
2882 6452 0.321298 GCGTCCAGAGCCCAAGTAAA 60.321 55.000 0.00 0.00 0.00 2.01
2883 6453 1.679032 GCGTCCAGAGCCCAAGTAAAT 60.679 52.381 0.00 0.00 0.00 1.40
2884 6454 2.280628 CGTCCAGAGCCCAAGTAAATC 58.719 52.381 0.00 0.00 0.00 2.17
2885 6455 2.644676 GTCCAGAGCCCAAGTAAATCC 58.355 52.381 0.00 0.00 0.00 3.01
2886 6456 2.239907 GTCCAGAGCCCAAGTAAATCCT 59.760 50.000 0.00 0.00 0.00 3.24
2887 6457 2.919602 TCCAGAGCCCAAGTAAATCCTT 59.080 45.455 0.00 0.00 0.00 3.36
2888 6458 3.333680 TCCAGAGCCCAAGTAAATCCTTT 59.666 43.478 0.00 0.00 0.00 3.11
2889 6459 3.696548 CCAGAGCCCAAGTAAATCCTTTC 59.303 47.826 0.00 0.00 0.00 2.62
2890 6460 3.696548 CAGAGCCCAAGTAAATCCTTTCC 59.303 47.826 0.00 0.00 0.00 3.13
2891 6461 3.333680 AGAGCCCAAGTAAATCCTTTCCA 59.666 43.478 0.00 0.00 0.00 3.53
2892 6462 3.696548 GAGCCCAAGTAAATCCTTTCCAG 59.303 47.826 0.00 0.00 0.00 3.86
2893 6463 3.333680 AGCCCAAGTAAATCCTTTCCAGA 59.666 43.478 0.00 0.00 0.00 3.86
2894 6464 4.086457 GCCCAAGTAAATCCTTTCCAGAA 58.914 43.478 0.00 0.00 0.00 3.02
2895 6465 4.526650 GCCCAAGTAAATCCTTTCCAGAAA 59.473 41.667 0.00 0.00 0.00 2.52
2896 6466 5.336770 GCCCAAGTAAATCCTTTCCAGAAAG 60.337 44.000 12.30 12.30 45.47 2.62
2904 6474 1.539157 CTTTCCAGAAAGGTGAGCCC 58.461 55.000 11.55 0.00 42.96 5.19
2905 6475 0.850100 TTTCCAGAAAGGTGAGCCCA 59.150 50.000 0.00 0.00 39.02 5.36
2906 6476 0.110486 TTCCAGAAAGGTGAGCCCAC 59.890 55.000 0.00 0.00 42.46 4.61
2907 6477 0.768221 TCCAGAAAGGTGAGCCCACT 60.768 55.000 0.00 0.00 42.77 4.00
2908 6478 0.322008 CCAGAAAGGTGAGCCCACTC 60.322 60.000 0.00 0.00 42.77 3.51
2909 6479 0.322008 CAGAAAGGTGAGCCCACTCC 60.322 60.000 0.00 0.00 42.74 3.85
2910 6480 0.474660 AGAAAGGTGAGCCCACTCCT 60.475 55.000 0.00 0.00 42.74 3.69
2911 6481 0.402121 GAAAGGTGAGCCCACTCCTT 59.598 55.000 0.00 1.36 42.74 3.36
2912 6482 0.853530 AAAGGTGAGCCCACTCCTTT 59.146 50.000 12.97 12.97 43.94 3.11
2913 6483 0.853530 AAGGTGAGCCCACTCCTTTT 59.146 50.000 0.00 0.00 42.74 2.27
2914 6484 0.853530 AGGTGAGCCCACTCCTTTTT 59.146 50.000 0.00 0.00 42.74 1.94
2946 6516 6.560253 AGCAAGTTTGGTTTATCAGTAGTG 57.440 37.500 0.00 0.00 34.89 2.74
2947 6517 6.062095 AGCAAGTTTGGTTTATCAGTAGTGT 58.938 36.000 0.00 0.00 34.89 3.55
2948 6518 7.221450 AGCAAGTTTGGTTTATCAGTAGTGTA 58.779 34.615 0.00 0.00 34.89 2.90
2949 6519 7.883311 AGCAAGTTTGGTTTATCAGTAGTGTAT 59.117 33.333 0.00 0.00 34.89 2.29
2950 6520 8.512138 GCAAGTTTGGTTTATCAGTAGTGTATT 58.488 33.333 0.00 0.00 0.00 1.89
2953 6523 9.569122 AGTTTGGTTTATCAGTAGTGTATTTGT 57.431 29.630 0.00 0.00 0.00 2.83
2954 6524 9.607285 GTTTGGTTTATCAGTAGTGTATTTGTG 57.393 33.333 0.00 0.00 0.00 3.33
2955 6525 7.915293 TGGTTTATCAGTAGTGTATTTGTGG 57.085 36.000 0.00 0.00 0.00 4.17
2956 6526 7.455058 TGGTTTATCAGTAGTGTATTTGTGGT 58.545 34.615 0.00 0.00 0.00 4.16
2957 6527 7.604927 TGGTTTATCAGTAGTGTATTTGTGGTC 59.395 37.037 0.00 0.00 0.00 4.02
2958 6528 7.604927 GGTTTATCAGTAGTGTATTTGTGGTCA 59.395 37.037 0.00 0.00 0.00 4.02
2959 6529 8.995220 GTTTATCAGTAGTGTATTTGTGGTCAA 58.005 33.333 0.00 0.00 0.00 3.18
2960 6530 9.733556 TTTATCAGTAGTGTATTTGTGGTCAAT 57.266 29.630 0.00 0.00 33.32 2.57
2961 6531 9.733556 TTATCAGTAGTGTATTTGTGGTCAATT 57.266 29.630 0.00 0.00 33.32 2.32
2963 6533 9.733556 ATCAGTAGTGTATTTGTGGTCAATTAA 57.266 29.630 0.00 0.00 33.32 1.40
2964 6534 8.995220 TCAGTAGTGTATTTGTGGTCAATTAAC 58.005 33.333 0.00 0.00 33.32 2.01
2965 6535 8.999431 CAGTAGTGTATTTGTGGTCAATTAACT 58.001 33.333 0.00 0.00 33.32 2.24
2966 6536 9.569122 AGTAGTGTATTTGTGGTCAATTAACTT 57.431 29.630 0.00 0.00 33.32 2.66
2967 6537 9.821662 GTAGTGTATTTGTGGTCAATTAACTTC 57.178 33.333 0.00 0.00 33.32 3.01
2968 6538 8.458573 AGTGTATTTGTGGTCAATTAACTTCA 57.541 30.769 0.00 0.00 33.32 3.02
2969 6539 8.349983 AGTGTATTTGTGGTCAATTAACTTCAC 58.650 33.333 0.00 0.00 33.32 3.18
2970 6540 7.593644 GTGTATTTGTGGTCAATTAACTTCACC 59.406 37.037 0.00 0.00 33.32 4.02
2971 6541 5.523438 TTTGTGGTCAATTAACTTCACCC 57.477 39.130 0.00 0.00 33.32 4.61
2972 6542 4.171878 TGTGGTCAATTAACTTCACCCA 57.828 40.909 0.00 0.00 0.00 4.51
2973 6543 4.141287 TGTGGTCAATTAACTTCACCCAG 58.859 43.478 0.00 0.00 0.00 4.45
2974 6544 3.506067 GTGGTCAATTAACTTCACCCAGG 59.494 47.826 0.00 0.00 0.00 4.45
2975 6545 2.492088 GGTCAATTAACTTCACCCAGGC 59.508 50.000 0.00 0.00 0.00 4.85
2976 6546 2.492088 GTCAATTAACTTCACCCAGGCC 59.508 50.000 0.00 0.00 0.00 5.19
2977 6547 1.824852 CAATTAACTTCACCCAGGCCC 59.175 52.381 0.00 0.00 0.00 5.80
2978 6548 1.382914 ATTAACTTCACCCAGGCCCT 58.617 50.000 0.00 0.00 0.00 5.19
2979 6549 2.047769 TTAACTTCACCCAGGCCCTA 57.952 50.000 0.00 0.00 0.00 3.53
2980 6550 2.280308 TAACTTCACCCAGGCCCTAT 57.720 50.000 0.00 0.00 0.00 2.57
2981 6551 0.919710 AACTTCACCCAGGCCCTATC 59.080 55.000 0.00 0.00 0.00 2.08
2982 6552 0.988678 ACTTCACCCAGGCCCTATCC 60.989 60.000 0.00 0.00 0.00 2.59
2983 6553 1.696314 TTCACCCAGGCCCTATCCC 60.696 63.158 0.00 0.00 0.00 3.85
2984 6554 3.178611 CACCCAGGCCCTATCCCC 61.179 72.222 0.00 0.00 0.00 4.81
2985 6555 4.900259 ACCCAGGCCCTATCCCCG 62.900 72.222 0.00 0.00 0.00 5.73
2986 6556 4.900259 CCCAGGCCCTATCCCCGT 62.900 72.222 0.00 0.00 0.00 5.28
2987 6557 2.772622 CCAGGCCCTATCCCCGTT 60.773 66.667 0.00 0.00 0.00 4.44
2988 6558 2.819284 CCAGGCCCTATCCCCGTTC 61.819 68.421 0.00 0.00 0.00 3.95
2989 6559 1.766461 CAGGCCCTATCCCCGTTCT 60.766 63.158 0.00 0.00 0.00 3.01
2990 6560 1.766461 AGGCCCTATCCCCGTTCTG 60.766 63.158 0.00 0.00 0.00 3.02
2991 6561 2.819284 GGCCCTATCCCCGTTCTGG 61.819 68.421 0.00 0.00 37.55 3.86
2992 6562 2.070650 GCCCTATCCCCGTTCTGGT 61.071 63.158 0.00 0.00 35.15 4.00
2993 6563 0.761702 GCCCTATCCCCGTTCTGGTA 60.762 60.000 0.00 0.00 35.15 3.25
2994 6564 1.797320 CCCTATCCCCGTTCTGGTAA 58.203 55.000 0.00 0.00 35.15 2.85
2995 6565 2.335933 CCCTATCCCCGTTCTGGTAAT 58.664 52.381 0.00 0.00 35.15 1.89
2996 6566 3.513517 CCCTATCCCCGTTCTGGTAATA 58.486 50.000 0.00 0.00 35.15 0.98
2997 6567 4.101856 CCCTATCCCCGTTCTGGTAATAT 58.898 47.826 0.00 0.00 35.15 1.28
2998 6568 4.161754 CCCTATCCCCGTTCTGGTAATATC 59.838 50.000 0.00 0.00 35.15 1.63
2999 6569 5.024118 CCTATCCCCGTTCTGGTAATATCT 58.976 45.833 0.00 0.00 35.15 1.98
3000 6570 5.127356 CCTATCCCCGTTCTGGTAATATCTC 59.873 48.000 0.00 0.00 35.15 2.75
3001 6571 4.194678 TCCCCGTTCTGGTAATATCTCT 57.805 45.455 0.00 0.00 35.15 3.10
3002 6572 4.553678 TCCCCGTTCTGGTAATATCTCTT 58.446 43.478 0.00 0.00 35.15 2.85
3003 6573 5.708544 TCCCCGTTCTGGTAATATCTCTTA 58.291 41.667 0.00 0.00 35.15 2.10
3004 6574 5.773680 TCCCCGTTCTGGTAATATCTCTTAG 59.226 44.000 0.00 0.00 35.15 2.18
3005 6575 5.471257 CCCGTTCTGGTAATATCTCTTAGC 58.529 45.833 0.00 0.00 35.15 3.09
3006 6576 5.471257 CCGTTCTGGTAATATCTCTTAGCC 58.529 45.833 0.00 0.00 0.00 3.93
3007 6577 5.471257 CGTTCTGGTAATATCTCTTAGCCC 58.529 45.833 0.00 0.00 0.00 5.19
3008 6578 5.010719 CGTTCTGGTAATATCTCTTAGCCCA 59.989 44.000 0.00 0.00 0.00 5.36
3009 6579 6.295349 CGTTCTGGTAATATCTCTTAGCCCAT 60.295 42.308 0.00 0.00 0.00 4.00
3010 6580 6.611613 TCTGGTAATATCTCTTAGCCCATG 57.388 41.667 0.00 0.00 0.00 3.66
3011 6581 6.322931 TCTGGTAATATCTCTTAGCCCATGA 58.677 40.000 0.00 0.00 0.00 3.07
3012 6582 6.438741 TCTGGTAATATCTCTTAGCCCATGAG 59.561 42.308 0.00 0.00 0.00 2.90
3013 6583 5.485353 TGGTAATATCTCTTAGCCCATGAGG 59.515 44.000 0.00 0.00 39.47 3.86
3023 6593 2.785868 CCCATGAGGCTAACAGTGC 58.214 57.895 0.00 0.00 0.00 4.40
3037 6607 6.447162 GCTAACAGTGCCATATTAAATTCCC 58.553 40.000 0.00 0.00 0.00 3.97
3038 6608 6.265422 GCTAACAGTGCCATATTAAATTCCCT 59.735 38.462 0.00 0.00 0.00 4.20
3039 6609 6.715347 AACAGTGCCATATTAAATTCCCTC 57.285 37.500 0.00 0.00 0.00 4.30
3040 6610 5.765510 ACAGTGCCATATTAAATTCCCTCA 58.234 37.500 0.00 0.00 0.00 3.86
3041 6611 6.194235 ACAGTGCCATATTAAATTCCCTCAA 58.806 36.000 0.00 0.00 0.00 3.02
3042 6612 6.322201 ACAGTGCCATATTAAATTCCCTCAAG 59.678 38.462 0.00 0.00 0.00 3.02
3043 6613 6.322201 CAGTGCCATATTAAATTCCCTCAAGT 59.678 38.462 0.00 0.00 0.00 3.16
3044 6614 6.897413 AGTGCCATATTAAATTCCCTCAAGTT 59.103 34.615 0.00 0.00 0.00 2.66
3045 6615 7.400052 AGTGCCATATTAAATTCCCTCAAGTTT 59.600 33.333 0.00 0.00 0.00 2.66
3046 6616 7.492344 GTGCCATATTAAATTCCCTCAAGTTTG 59.508 37.037 0.00 0.00 0.00 2.93
3047 6617 6.986231 GCCATATTAAATTCCCTCAAGTTTGG 59.014 38.462 0.00 0.00 0.00 3.28
3048 6618 7.500141 CCATATTAAATTCCCTCAAGTTTGGG 58.500 38.462 4.66 4.66 44.66 4.12
3053 6623 0.476771 TCCCTCAAGTTTGGGACACC 59.523 55.000 8.87 0.00 46.69 4.16
3054 6624 0.184933 CCCTCAAGTTTGGGACACCA 59.815 55.000 5.01 0.00 46.15 4.17
3065 6635 4.268720 GACACCAAGGCCACCAAA 57.731 55.556 5.01 0.00 0.00 3.28
3066 6636 1.739667 GACACCAAGGCCACCAAAC 59.260 57.895 5.01 0.00 0.00 2.93
3067 6637 0.755327 GACACCAAGGCCACCAAACT 60.755 55.000 5.01 0.00 0.00 2.66
3068 6638 0.755327 ACACCAAGGCCACCAAACTC 60.755 55.000 5.01 0.00 0.00 3.01
3069 6639 1.152546 ACCAAGGCCACCAAACTCC 60.153 57.895 5.01 0.00 0.00 3.85
3070 6640 1.153756 CCAAGGCCACCAAACTCCT 59.846 57.895 5.01 0.00 0.00 3.69
3071 6641 0.469892 CCAAGGCCACCAAACTCCTT 60.470 55.000 5.01 0.00 39.35 3.36
3072 6642 1.413118 CAAGGCCACCAAACTCCTTT 58.587 50.000 5.01 0.00 36.85 3.11
3073 6643 1.762370 CAAGGCCACCAAACTCCTTTT 59.238 47.619 5.01 0.00 36.85 2.27
3074 6644 2.170397 CAAGGCCACCAAACTCCTTTTT 59.830 45.455 5.01 0.00 36.85 1.94
3075 6645 2.039418 AGGCCACCAAACTCCTTTTTC 58.961 47.619 5.01 0.00 0.00 2.29
3076 6646 2.039418 GGCCACCAAACTCCTTTTTCT 58.961 47.619 0.00 0.00 0.00 2.52
3077 6647 2.224042 GGCCACCAAACTCCTTTTTCTG 60.224 50.000 0.00 0.00 0.00 3.02
3078 6648 2.803133 GCCACCAAACTCCTTTTTCTGC 60.803 50.000 0.00 0.00 0.00 4.26
3079 6649 2.543653 CCACCAAACTCCTTTTTCTGCG 60.544 50.000 0.00 0.00 0.00 5.18
3080 6650 2.357637 CACCAAACTCCTTTTTCTGCGA 59.642 45.455 0.00 0.00 0.00 5.10
3081 6651 3.004734 CACCAAACTCCTTTTTCTGCGAT 59.995 43.478 0.00 0.00 0.00 4.58
3082 6652 4.215399 CACCAAACTCCTTTTTCTGCGATA 59.785 41.667 0.00 0.00 0.00 2.92
3083 6653 5.010282 ACCAAACTCCTTTTTCTGCGATAT 58.990 37.500 0.00 0.00 0.00 1.63
3084 6654 5.123979 ACCAAACTCCTTTTTCTGCGATATC 59.876 40.000 0.00 0.00 0.00 1.63
3085 6655 5.123820 CCAAACTCCTTTTTCTGCGATATCA 59.876 40.000 3.12 0.00 0.00 2.15
3086 6656 6.349280 CCAAACTCCTTTTTCTGCGATATCAA 60.349 38.462 3.12 0.00 0.00 2.57
3087 6657 5.803020 ACTCCTTTTTCTGCGATATCAAC 57.197 39.130 3.12 0.00 0.00 3.18
3088 6658 4.636206 ACTCCTTTTTCTGCGATATCAACC 59.364 41.667 3.12 0.00 0.00 3.77
3089 6659 3.945285 TCCTTTTTCTGCGATATCAACCC 59.055 43.478 3.12 0.00 0.00 4.11
3090 6660 3.066760 CCTTTTTCTGCGATATCAACCCC 59.933 47.826 3.12 0.00 0.00 4.95
3091 6661 2.341846 TTTCTGCGATATCAACCCCC 57.658 50.000 3.12 0.00 0.00 5.40
3092 6662 1.208706 TTCTGCGATATCAACCCCCA 58.791 50.000 3.12 0.00 0.00 4.96
3093 6663 1.208706 TCTGCGATATCAACCCCCAA 58.791 50.000 3.12 0.00 0.00 4.12
3094 6664 1.774254 TCTGCGATATCAACCCCCAAT 59.226 47.619 3.12 0.00 0.00 3.16
3095 6665 2.174639 TCTGCGATATCAACCCCCAATT 59.825 45.455 3.12 0.00 0.00 2.32
3096 6666 3.392947 TCTGCGATATCAACCCCCAATTA 59.607 43.478 3.12 0.00 0.00 1.40
3097 6667 3.750371 TGCGATATCAACCCCCAATTAG 58.250 45.455 3.12 0.00 0.00 1.73
3098 6668 2.488153 GCGATATCAACCCCCAATTAGC 59.512 50.000 3.12 0.00 0.00 3.09
3099 6669 3.810743 GCGATATCAACCCCCAATTAGCT 60.811 47.826 3.12 0.00 0.00 3.32
3100 6670 4.564821 GCGATATCAACCCCCAATTAGCTA 60.565 45.833 3.12 0.00 0.00 3.32
3101 6671 5.178797 CGATATCAACCCCCAATTAGCTAG 58.821 45.833 3.12 0.00 0.00 3.42
3102 6672 5.046591 CGATATCAACCCCCAATTAGCTAGA 60.047 44.000 3.12 0.00 0.00 2.43
3103 6673 6.352222 CGATATCAACCCCCAATTAGCTAGAT 60.352 42.308 3.12 0.00 0.00 1.98
3104 6674 4.437682 TCAACCCCCAATTAGCTAGATG 57.562 45.455 0.00 0.00 0.00 2.90
3105 6675 4.044308 TCAACCCCCAATTAGCTAGATGA 58.956 43.478 8.89 0.00 0.00 2.92
3106 6676 4.665009 TCAACCCCCAATTAGCTAGATGAT 59.335 41.667 8.89 0.00 0.00 2.45
3107 6677 5.849475 TCAACCCCCAATTAGCTAGATGATA 59.151 40.000 8.89 0.00 0.00 2.15
3108 6678 6.505344 TCAACCCCCAATTAGCTAGATGATAT 59.495 38.462 8.89 0.00 0.00 1.63
3109 6679 6.977244 ACCCCCAATTAGCTAGATGATATT 57.023 37.500 8.89 0.00 0.00 1.28
3110 6680 7.348680 ACCCCCAATTAGCTAGATGATATTT 57.651 36.000 8.89 0.00 0.00 1.40
3111 6681 8.463055 ACCCCCAATTAGCTAGATGATATTTA 57.537 34.615 8.89 0.00 0.00 1.40
3112 6682 9.073587 ACCCCCAATTAGCTAGATGATATTTAT 57.926 33.333 8.89 0.00 0.00 1.40
3113 6683 9.347240 CCCCCAATTAGCTAGATGATATTTATG 57.653 37.037 8.89 0.00 0.00 1.90
3132 6702 8.655935 ATTTATGATTATCATCAAGGTTCCCC 57.344 34.615 11.32 0.00 42.93 4.81
3133 6703 4.453480 TGATTATCATCAAGGTTCCCCC 57.547 45.455 0.00 0.00 36.41 5.40
3157 6727 2.978156 AAAAAGTGAGCCATCTGGGA 57.022 45.000 0.00 0.00 40.01 4.37
3158 6728 2.206576 AAAAGTGAGCCATCTGGGAC 57.793 50.000 0.00 0.00 40.01 4.46
3159 6729 0.036010 AAAGTGAGCCATCTGGGACG 60.036 55.000 0.00 0.00 40.01 4.79
3160 6730 1.194781 AAGTGAGCCATCTGGGACGT 61.195 55.000 0.00 0.00 40.01 4.34
3161 6731 1.448540 GTGAGCCATCTGGGACGTG 60.449 63.158 0.00 0.00 40.01 4.49
3162 6732 1.609210 TGAGCCATCTGGGACGTGA 60.609 57.895 0.00 0.00 40.01 4.35
3163 6733 0.977627 TGAGCCATCTGGGACGTGAT 60.978 55.000 0.00 0.00 40.01 3.06
3164 6734 1.040646 GAGCCATCTGGGACGTGATA 58.959 55.000 0.00 0.00 40.01 2.15
3165 6735 1.000283 GAGCCATCTGGGACGTGATAG 60.000 57.143 0.00 0.00 40.01 2.08
3166 6736 0.601311 GCCATCTGGGACGTGATAGC 60.601 60.000 0.00 0.00 40.01 2.97
3167 6737 1.043816 CCATCTGGGACGTGATAGCT 58.956 55.000 0.00 0.00 40.01 3.32
3168 6738 1.414181 CCATCTGGGACGTGATAGCTT 59.586 52.381 0.00 0.00 40.01 3.74
3169 6739 2.158900 CCATCTGGGACGTGATAGCTTT 60.159 50.000 0.00 0.00 40.01 3.51
3170 6740 2.672961 TCTGGGACGTGATAGCTTTG 57.327 50.000 0.00 0.00 0.00 2.77
3171 6741 2.176045 TCTGGGACGTGATAGCTTTGA 58.824 47.619 0.00 0.00 0.00 2.69
3172 6742 2.766263 TCTGGGACGTGATAGCTTTGAT 59.234 45.455 0.00 0.00 0.00 2.57
3173 6743 2.868583 CTGGGACGTGATAGCTTTGATG 59.131 50.000 0.00 0.00 0.00 3.07
3174 6744 2.213499 GGGACGTGATAGCTTTGATGG 58.787 52.381 0.00 0.00 0.00 3.51
3175 6745 1.599542 GGACGTGATAGCTTTGATGGC 59.400 52.381 0.00 0.00 0.00 4.40
3176 6746 1.599542 GACGTGATAGCTTTGATGGCC 59.400 52.381 0.00 0.00 0.00 5.36
3177 6747 0.947244 CGTGATAGCTTTGATGGCCC 59.053 55.000 0.00 0.00 0.00 5.80
3178 6748 1.746861 CGTGATAGCTTTGATGGCCCA 60.747 52.381 0.00 0.00 0.00 5.36
3179 6749 1.678101 GTGATAGCTTTGATGGCCCAC 59.322 52.381 0.00 0.00 0.00 4.61
3180 6750 1.565759 TGATAGCTTTGATGGCCCACT 59.434 47.619 0.00 0.00 0.00 4.00
3181 6751 2.025037 TGATAGCTTTGATGGCCCACTT 60.025 45.455 0.00 0.00 0.00 3.16
3182 6752 2.603075 TAGCTTTGATGGCCCACTTT 57.397 45.000 0.00 0.00 0.00 2.66
3183 6753 0.971386 AGCTTTGATGGCCCACTTTG 59.029 50.000 0.00 0.00 0.00 2.77
3184 6754 0.037046 GCTTTGATGGCCCACTTTGG 60.037 55.000 0.00 0.00 37.25 3.28
3185 6755 1.631405 CTTTGATGGCCCACTTTGGA 58.369 50.000 0.00 0.00 40.96 3.53
3186 6756 1.969923 CTTTGATGGCCCACTTTGGAA 59.030 47.619 0.00 0.00 40.96 3.53
3187 6757 2.094100 TTGATGGCCCACTTTGGAAA 57.906 45.000 0.00 0.00 40.96 3.13
3188 6758 1.337118 TGATGGCCCACTTTGGAAAC 58.663 50.000 0.00 0.00 40.96 2.78
3189 6759 1.133199 TGATGGCCCACTTTGGAAACT 60.133 47.619 0.00 0.00 40.96 2.66
3190 6760 1.970640 GATGGCCCACTTTGGAAACTT 59.029 47.619 0.00 0.00 40.96 2.66
3191 6761 1.118838 TGGCCCACTTTGGAAACTTG 58.881 50.000 0.00 0.00 40.96 3.16
3192 6762 1.342474 TGGCCCACTTTGGAAACTTGA 60.342 47.619 0.00 0.00 40.96 3.02
3193 6763 1.970640 GGCCCACTTTGGAAACTTGAT 59.029 47.619 0.00 0.00 40.96 2.57
3194 6764 2.029020 GGCCCACTTTGGAAACTTGATC 60.029 50.000 0.00 0.00 40.96 2.92
3195 6765 2.627699 GCCCACTTTGGAAACTTGATCA 59.372 45.455 0.00 0.00 40.96 2.92
3196 6766 3.552890 GCCCACTTTGGAAACTTGATCAC 60.553 47.826 0.00 0.00 40.96 3.06
3197 6767 3.304659 CCCACTTTGGAAACTTGATCACG 60.305 47.826 0.00 0.00 40.96 4.35
3198 6768 3.304659 CCACTTTGGAAACTTGATCACGG 60.305 47.826 4.03 0.00 40.96 4.94
3199 6769 3.563808 CACTTTGGAAACTTGATCACGGA 59.436 43.478 4.03 0.00 0.00 4.69
3200 6770 3.564225 ACTTTGGAAACTTGATCACGGAC 59.436 43.478 4.03 0.00 0.00 4.79
3201 6771 2.920724 TGGAAACTTGATCACGGACA 57.079 45.000 4.03 0.00 0.00 4.02
3202 6772 3.417069 TGGAAACTTGATCACGGACAT 57.583 42.857 4.03 0.00 0.00 3.06
3203 6773 3.334691 TGGAAACTTGATCACGGACATC 58.665 45.455 4.03 0.00 0.00 3.06
3204 6774 3.244387 TGGAAACTTGATCACGGACATCA 60.244 43.478 4.03 0.00 0.00 3.07
3205 6775 3.751175 GGAAACTTGATCACGGACATCAA 59.249 43.478 4.03 5.98 37.82 2.57
3210 6780 4.494484 CTTGATCACGGACATCAAGTACA 58.506 43.478 18.27 0.00 46.67 2.90
3211 6781 4.736126 TGATCACGGACATCAAGTACAT 57.264 40.909 0.00 0.00 0.00 2.29
3212 6782 5.845391 TGATCACGGACATCAAGTACATA 57.155 39.130 0.00 0.00 0.00 2.29
3213 6783 5.831997 TGATCACGGACATCAAGTACATAG 58.168 41.667 0.00 0.00 0.00 2.23
3214 6784 4.649088 TCACGGACATCAAGTACATAGG 57.351 45.455 0.00 0.00 0.00 2.57
3215 6785 3.383505 TCACGGACATCAAGTACATAGGG 59.616 47.826 0.00 0.00 0.00 3.53
3216 6786 3.383505 CACGGACATCAAGTACATAGGGA 59.616 47.826 0.00 0.00 0.00 4.20
3217 6787 4.039245 CACGGACATCAAGTACATAGGGAT 59.961 45.833 0.00 0.00 0.00 3.85
3218 6788 5.243060 CACGGACATCAAGTACATAGGGATA 59.757 44.000 0.00 0.00 0.00 2.59
3219 6789 5.243283 ACGGACATCAAGTACATAGGGATAC 59.757 44.000 0.00 0.00 0.00 2.24
3220 6790 5.477291 CGGACATCAAGTACATAGGGATACT 59.523 44.000 0.00 0.00 32.93 2.12
3221 6791 6.657966 CGGACATCAAGTACATAGGGATACTA 59.342 42.308 0.00 0.00 35.80 1.82
3222 6792 7.148222 CGGACATCAAGTACATAGGGATACTAG 60.148 44.444 0.00 0.00 34.56 2.57
3223 6793 7.363094 GGACATCAAGTACATAGGGATACTAGC 60.363 44.444 0.00 0.00 34.56 3.42
3224 6794 7.242359 ACATCAAGTACATAGGGATACTAGCT 58.758 38.462 0.00 0.00 34.56 3.32
3225 6795 8.391699 ACATCAAGTACATAGGGATACTAGCTA 58.608 37.037 0.00 0.00 34.56 3.32
3226 6796 9.415008 CATCAAGTACATAGGGATACTAGCTAT 57.585 37.037 0.00 0.00 34.56 2.97
3227 6797 8.809468 TCAAGTACATAGGGATACTAGCTATG 57.191 38.462 10.89 10.89 40.27 2.23
3228 6798 7.339721 TCAAGTACATAGGGATACTAGCTATGC 59.660 40.741 11.90 5.27 38.92 3.14
3229 6799 6.732487 AGTACATAGGGATACTAGCTATGCA 58.268 40.000 11.90 0.00 38.92 3.96
3230 6800 7.182760 AGTACATAGGGATACTAGCTATGCAA 58.817 38.462 11.90 2.08 38.92 4.08
3231 6801 6.537453 ACATAGGGATACTAGCTATGCAAG 57.463 41.667 11.90 0.00 38.92 4.01
3266 6836 5.119694 ACTAACTTAGCTTCATAGCCAAGC 58.880 41.667 0.00 0.00 46.15 4.01
3267 6837 3.634397 ACTTAGCTTCATAGCCAAGCA 57.366 42.857 7.14 0.00 46.15 3.91
3268 6838 3.539604 ACTTAGCTTCATAGCCAAGCAG 58.460 45.455 7.14 0.00 46.15 4.24
3269 6839 3.054802 ACTTAGCTTCATAGCCAAGCAGT 60.055 43.478 7.14 0.27 46.15 4.40
3270 6840 4.921337 ACTTAGCTTCATAGCCAAGCAGTC 60.921 45.833 7.14 0.00 46.15 3.51
3271 6841 2.035530 GCTTCATAGCCAAGCAGTCT 57.964 50.000 0.00 0.00 44.87 3.24
3272 6842 1.939255 GCTTCATAGCCAAGCAGTCTC 59.061 52.381 0.00 0.00 44.87 3.36
3273 6843 2.559440 CTTCATAGCCAAGCAGTCTCC 58.441 52.381 0.00 0.00 0.00 3.71
3274 6844 0.833287 TCATAGCCAAGCAGTCTCCC 59.167 55.000 0.00 0.00 0.00 4.30
3275 6845 0.835941 CATAGCCAAGCAGTCTCCCT 59.164 55.000 0.00 0.00 0.00 4.20
3276 6846 1.211457 CATAGCCAAGCAGTCTCCCTT 59.789 52.381 0.00 0.00 0.00 3.95
3277 6847 1.362224 TAGCCAAGCAGTCTCCCTTT 58.638 50.000 0.00 0.00 0.00 3.11
3278 6848 0.037447 AGCCAAGCAGTCTCCCTTTC 59.963 55.000 0.00 0.00 0.00 2.62
3279 6849 0.962855 GCCAAGCAGTCTCCCTTTCC 60.963 60.000 0.00 0.00 0.00 3.13
3280 6850 0.401738 CCAAGCAGTCTCCCTTTCCA 59.598 55.000 0.00 0.00 0.00 3.53
3281 6851 1.528129 CAAGCAGTCTCCCTTTCCAC 58.472 55.000 0.00 0.00 0.00 4.02
3282 6852 0.402121 AAGCAGTCTCCCTTTCCACC 59.598 55.000 0.00 0.00 0.00 4.61
3283 6853 1.002011 GCAGTCTCCCTTTCCACCC 60.002 63.158 0.00 0.00 0.00 4.61
3284 6854 1.779061 GCAGTCTCCCTTTCCACCCA 61.779 60.000 0.00 0.00 0.00 4.51
3285 6855 0.036875 CAGTCTCCCTTTCCACCCAC 59.963 60.000 0.00 0.00 0.00 4.61
3286 6856 1.134438 AGTCTCCCTTTCCACCCACC 61.134 60.000 0.00 0.00 0.00 4.61
3287 6857 1.073319 TCTCCCTTTCCACCCACCA 60.073 57.895 0.00 0.00 0.00 4.17
3288 6858 0.699577 TCTCCCTTTCCACCCACCAA 60.700 55.000 0.00 0.00 0.00 3.67
3289 6859 0.187361 CTCCCTTTCCACCCACCAAA 59.813 55.000 0.00 0.00 0.00 3.28
3290 6860 0.187361 TCCCTTTCCACCCACCAAAG 59.813 55.000 0.00 0.00 0.00 2.77
3291 6861 1.471829 CCCTTTCCACCCACCAAAGC 61.472 60.000 0.00 0.00 0.00 3.51
3292 6862 1.659794 CTTTCCACCCACCAAAGCG 59.340 57.895 0.00 0.00 0.00 4.68
3293 6863 0.821711 CTTTCCACCCACCAAAGCGA 60.822 55.000 0.00 0.00 0.00 4.93
3294 6864 0.178975 TTTCCACCCACCAAAGCGAT 60.179 50.000 0.00 0.00 0.00 4.58
3295 6865 0.178975 TTCCACCCACCAAAGCGATT 60.179 50.000 0.00 0.00 0.00 3.34
3296 6866 0.893270 TCCACCCACCAAAGCGATTG 60.893 55.000 0.00 0.00 38.84 2.67
3297 6867 0.893270 CCACCCACCAAAGCGATTGA 60.893 55.000 6.83 0.00 41.85 2.57
3298 6868 1.176527 CACCCACCAAAGCGATTGAT 58.823 50.000 6.83 0.00 41.85 2.57
3299 6869 1.135315 CACCCACCAAAGCGATTGATG 60.135 52.381 6.83 0.25 41.85 3.07
3300 6870 1.271871 ACCCACCAAAGCGATTGATGA 60.272 47.619 6.83 0.00 41.85 2.92
3301 6871 2.026641 CCCACCAAAGCGATTGATGAT 58.973 47.619 6.83 0.00 41.85 2.45
3302 6872 2.428171 CCCACCAAAGCGATTGATGATT 59.572 45.455 6.83 0.00 41.85 2.57
3303 6873 3.119029 CCCACCAAAGCGATTGATGATTT 60.119 43.478 6.83 0.00 41.85 2.17
3304 6874 4.097741 CCCACCAAAGCGATTGATGATTTA 59.902 41.667 6.83 0.00 41.85 1.40
3305 6875 5.394005 CCCACCAAAGCGATTGATGATTTAA 60.394 40.000 6.83 0.00 41.85 1.52
3306 6876 6.275335 CCACCAAAGCGATTGATGATTTAAT 58.725 36.000 6.83 0.00 41.85 1.40
3307 6877 6.418819 CCACCAAAGCGATTGATGATTTAATC 59.581 38.462 6.83 0.00 41.85 1.75
3308 6878 6.974048 CACCAAAGCGATTGATGATTTAATCA 59.026 34.615 10.23 10.23 41.85 2.57
3310 6880 7.489113 ACCAAAGCGATTGATGATTTAATCAAC 59.511 33.333 11.88 9.80 46.46 3.18
3311 6881 7.488792 CCAAAGCGATTGATGATTTAATCAACA 59.511 33.333 11.88 12.36 46.46 3.33
3331 6901 5.505181 ACAATGGGTTGTATGTCTTCTCT 57.495 39.130 0.00 0.00 46.37 3.10
3332 6902 5.880901 ACAATGGGTTGTATGTCTTCTCTT 58.119 37.500 0.00 0.00 46.37 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
450 3328 1.078918 CTTGACGCCTCTGCCATCA 60.079 57.895 0.00 0.00 0.00 3.07
522 3401 6.488817 ACGTGTTTGTTGAATTTGGTACTAC 58.511 36.000 0.00 0.00 0.00 2.73
550 3429 6.992715 ACGGGATTAAGGAACATATTCTTGAG 59.007 38.462 0.00 0.00 34.98 3.02
565 3444 4.454504 ACACAAGCACTAAACGGGATTAAG 59.545 41.667 0.00 0.00 0.00 1.85
602 3483 1.866059 CACGTGATGCTGCAATGCG 60.866 57.895 10.90 13.40 35.36 4.73
668 3549 1.803555 GCTGAGTGCTCCTTTCACTTC 59.196 52.381 0.00 0.00 44.09 3.01
711 3592 4.267536 TCGCTGTCACTACCTGTAGTTAT 58.732 43.478 7.22 0.00 43.35 1.89
717 3598 0.882474 GTCTCGCTGTCACTACCTGT 59.118 55.000 0.00 0.00 0.00 4.00
720 3601 4.767633 CGTCTCGCTGTCACTACC 57.232 61.111 0.00 0.00 0.00 3.18
750 3632 2.802667 GATCGCACGCACGCAATCT 61.803 57.895 0.00 0.00 0.00 2.40
824 3732 5.508573 CGAGACTACTTCATGTACGACAAAG 59.491 44.000 0.00 0.00 0.00 2.77
908 3870 3.493272 CGTCGCTGCTTTATATCGATCT 58.507 45.455 0.00 0.00 0.00 2.75
913 3875 1.714460 CGTCCGTCGCTGCTTTATATC 59.286 52.381 0.00 0.00 0.00 1.63
936 3901 1.080435 GTTGCGCGGGTAACTCCTAC 61.080 60.000 22.86 0.00 36.05 3.18
945 3910 1.217244 CCTAACTAGTTGCGCGGGT 59.783 57.895 18.56 0.00 0.00 5.28
947 3912 0.810031 ATGCCTAACTAGTTGCGCGG 60.810 55.000 18.56 13.12 0.00 6.46
1441 4719 4.940046 AGTTCATGTCATCAGTTCATCACC 59.060 41.667 0.00 0.00 0.00 4.02
1443 4721 6.470278 AGAAGTTCATGTCATCAGTTCATCA 58.530 36.000 5.50 0.00 0.00 3.07
1444 4722 6.981762 AGAAGTTCATGTCATCAGTTCATC 57.018 37.500 5.50 0.00 0.00 2.92
1445 4723 6.713903 ACAAGAAGTTCATGTCATCAGTTCAT 59.286 34.615 7.91 0.00 0.00 2.57
1446 4724 6.057533 ACAAGAAGTTCATGTCATCAGTTCA 58.942 36.000 7.91 0.00 0.00 3.18
1447 4725 6.551385 ACAAGAAGTTCATGTCATCAGTTC 57.449 37.500 7.91 2.57 0.00 3.01
1448 4726 6.949352 AACAAGAAGTTCATGTCATCAGTT 57.051 33.333 13.71 0.00 34.74 3.16
1449 4727 6.949352 AAACAAGAAGTTCATGTCATCAGT 57.051 33.333 13.71 0.00 40.26 3.41
1530 4825 2.222796 CGTCTGCAATCGTACCACATTG 60.223 50.000 0.00 3.50 33.77 2.82
1532 4827 1.640428 CGTCTGCAATCGTACCACAT 58.360 50.000 0.00 0.00 0.00 3.21
1533 4828 1.011968 GCGTCTGCAATCGTACCACA 61.012 55.000 10.92 0.00 42.15 4.17
1534 4829 0.736325 AGCGTCTGCAATCGTACCAC 60.736 55.000 10.92 0.00 46.23 4.16
1535 4830 0.457853 GAGCGTCTGCAATCGTACCA 60.458 55.000 10.92 0.00 46.23 3.25
1536 4831 1.472276 CGAGCGTCTGCAATCGTACC 61.472 60.000 10.92 2.06 46.23 3.34
1696 4991 2.742372 GCTGACGTGGATGCCGTT 60.742 61.111 0.00 0.00 38.92 4.44
1731 5026 1.340017 CCGATGGTGGTGTTGAGGATT 60.340 52.381 0.00 0.00 0.00 3.01
1755 5050 4.571250 GAGACACAATCGTCGCCA 57.429 55.556 0.00 0.00 40.98 5.69
1887 5187 1.801771 TGCTATTACGTTGCGCAAACT 59.198 42.857 26.87 15.08 36.56 2.66
1976 5287 2.214920 GGTCACGTTCCTCACCCCT 61.215 63.158 0.00 0.00 0.00 4.79
2045 5356 3.197790 CGGAGTTGCATCGCCCAG 61.198 66.667 11.42 0.00 0.00 4.45
2161 5480 2.171725 GGAGACGTACATTGCCCGC 61.172 63.158 0.00 0.00 0.00 6.13
2192 5511 3.435671 GGGTTCACATGTAGTAGTTGCAC 59.564 47.826 0.00 0.00 0.00 4.57
2206 5550 1.182667 AGTCGATCGATGGGTTCACA 58.817 50.000 22.50 0.00 0.00 3.58
2367 5729 3.618351 CCTGATGTTCCTGAGCTTGATT 58.382 45.455 0.00 0.00 0.00 2.57
2448 5810 1.454111 CGGTCTGACCTCTCCGGAT 60.454 63.158 23.49 0.00 39.41 4.18
2599 6169 2.883386 GAGATCCACCAAGCAATGATCC 59.117 50.000 0.00 0.00 0.00 3.36
2710 6280 8.542132 CAAGAACAACCACACAAAATTTATGAG 58.458 33.333 8.88 2.17 0.00 2.90
2807 6377 5.045215 CCCGTAAATCTATACGCTCACAAA 58.955 41.667 1.56 0.00 45.51 2.83
2822 6392 2.434702 GGACATCCAGACTCCCGTAAAT 59.565 50.000 0.00 0.00 35.64 1.40
2851 6421 2.895372 GGACGCGGTAAGCCCATG 60.895 66.667 12.47 0.00 44.76 3.66
2852 6422 3.385749 CTGGACGCGGTAAGCCCAT 62.386 63.158 12.47 0.00 44.76 4.00
2853 6423 4.077184 CTGGACGCGGTAAGCCCA 62.077 66.667 12.47 6.74 44.76 5.36
2854 6424 3.718210 CTCTGGACGCGGTAAGCCC 62.718 68.421 12.47 1.91 44.76 5.19
2855 6425 2.202756 CTCTGGACGCGGTAAGCC 60.203 66.667 12.47 4.06 44.76 4.35
2856 6426 2.886124 GCTCTGGACGCGGTAAGC 60.886 66.667 12.47 8.28 43.95 3.09
2857 6427 2.202756 GGCTCTGGACGCGGTAAG 60.203 66.667 12.47 4.25 0.00 2.34
2858 6428 3.766691 GGGCTCTGGACGCGGTAA 61.767 66.667 12.47 0.00 0.00 2.85
2862 6432 2.501223 TTACTTGGGCTCTGGACGCG 62.501 60.000 3.53 3.53 0.00 6.01
2863 6433 0.321298 TTTACTTGGGCTCTGGACGC 60.321 55.000 0.00 0.00 0.00 5.19
2864 6434 2.280628 GATTTACTTGGGCTCTGGACG 58.719 52.381 0.00 0.00 0.00 4.79
2865 6435 2.239907 AGGATTTACTTGGGCTCTGGAC 59.760 50.000 0.00 0.00 0.00 4.02
2866 6436 2.562296 AGGATTTACTTGGGCTCTGGA 58.438 47.619 0.00 0.00 0.00 3.86
2867 6437 3.372440 AAGGATTTACTTGGGCTCTGG 57.628 47.619 0.00 0.00 0.00 3.86
2868 6438 3.696548 GGAAAGGATTTACTTGGGCTCTG 59.303 47.826 0.00 0.00 39.27 3.35
2869 6439 3.333680 TGGAAAGGATTTACTTGGGCTCT 59.666 43.478 0.00 0.00 40.44 4.09
2870 6440 3.696548 CTGGAAAGGATTTACTTGGGCTC 59.303 47.826 0.00 0.00 40.44 4.70
2871 6441 3.333680 TCTGGAAAGGATTTACTTGGGCT 59.666 43.478 0.00 0.00 40.44 5.19
2872 6442 3.697166 TCTGGAAAGGATTTACTTGGGC 58.303 45.455 0.00 0.00 40.44 5.36
2873 6443 6.272822 CTTTCTGGAAAGGATTTACTTGGG 57.727 41.667 13.48 0.00 40.44 4.12
2885 6455 1.202927 TGGGCTCACCTTTCTGGAAAG 60.203 52.381 14.15 14.15 45.47 2.62
2886 6456 0.850100 TGGGCTCACCTTTCTGGAAA 59.150 50.000 0.00 0.00 41.11 3.13
2887 6457 0.110486 GTGGGCTCACCTTTCTGGAA 59.890 55.000 5.01 0.00 41.11 3.53
2888 6458 0.768221 AGTGGGCTCACCTTTCTGGA 60.768 55.000 14.62 0.00 44.64 3.86
2889 6459 0.322008 GAGTGGGCTCACCTTTCTGG 60.322 60.000 14.62 0.00 44.64 3.86
2890 6460 0.322008 GGAGTGGGCTCACCTTTCTG 60.322 60.000 14.62 0.00 44.64 3.02
2891 6461 0.474660 AGGAGTGGGCTCACCTTTCT 60.475 55.000 14.62 0.00 44.64 2.52
2892 6462 0.402121 AAGGAGTGGGCTCACCTTTC 59.598 55.000 14.62 4.26 44.64 2.62
2893 6463 0.853530 AAAGGAGTGGGCTCACCTTT 59.146 50.000 14.62 14.29 44.64 3.11
2894 6464 0.853530 AAAAGGAGTGGGCTCACCTT 59.146 50.000 14.62 8.02 44.64 3.50
2895 6465 0.853530 AAAAAGGAGTGGGCTCACCT 59.146 50.000 14.62 0.25 44.64 4.00
2896 6466 3.439440 AAAAAGGAGTGGGCTCACC 57.561 52.632 14.62 4.73 44.64 4.02
2920 6490 7.379529 CACTACTGATAAACCAAACTTGCTTTG 59.620 37.037 0.00 0.00 39.31 2.77
2921 6491 7.068226 ACACTACTGATAAACCAAACTTGCTTT 59.932 33.333 0.00 0.00 0.00 3.51
2922 6492 6.546034 ACACTACTGATAAACCAAACTTGCTT 59.454 34.615 0.00 0.00 0.00 3.91
2923 6493 6.062095 ACACTACTGATAAACCAAACTTGCT 58.938 36.000 0.00 0.00 0.00 3.91
2924 6494 6.313744 ACACTACTGATAAACCAAACTTGC 57.686 37.500 0.00 0.00 0.00 4.01
2927 6497 9.569122 ACAAATACACTACTGATAAACCAAACT 57.431 29.630 0.00 0.00 0.00 2.66
2928 6498 9.607285 CACAAATACACTACTGATAAACCAAAC 57.393 33.333 0.00 0.00 0.00 2.93
2929 6499 8.788806 CCACAAATACACTACTGATAAACCAAA 58.211 33.333 0.00 0.00 0.00 3.28
2930 6500 7.940137 ACCACAAATACACTACTGATAAACCAA 59.060 33.333 0.00 0.00 0.00 3.67
2931 6501 7.455058 ACCACAAATACACTACTGATAAACCA 58.545 34.615 0.00 0.00 0.00 3.67
2932 6502 7.604927 TGACCACAAATACACTACTGATAAACC 59.395 37.037 0.00 0.00 0.00 3.27
2933 6503 8.542497 TGACCACAAATACACTACTGATAAAC 57.458 34.615 0.00 0.00 0.00 2.01
2934 6504 9.733556 ATTGACCACAAATACACTACTGATAAA 57.266 29.630 0.00 0.00 39.54 1.40
2935 6505 9.733556 AATTGACCACAAATACACTACTGATAA 57.266 29.630 0.00 0.00 39.54 1.75
2937 6507 9.733556 TTAATTGACCACAAATACACTACTGAT 57.266 29.630 0.00 0.00 39.54 2.90
2938 6508 8.995220 GTTAATTGACCACAAATACACTACTGA 58.005 33.333 0.00 0.00 39.54 3.41
2939 6509 8.999431 AGTTAATTGACCACAAATACACTACTG 58.001 33.333 0.00 0.00 39.54 2.74
2940 6510 9.569122 AAGTTAATTGACCACAAATACACTACT 57.431 29.630 0.00 0.00 39.54 2.57
2941 6511 9.821662 GAAGTTAATTGACCACAAATACACTAC 57.178 33.333 0.00 0.00 39.54 2.73
2942 6512 9.562408 TGAAGTTAATTGACCACAAATACACTA 57.438 29.630 0.00 0.00 39.54 2.74
2943 6513 8.349983 GTGAAGTTAATTGACCACAAATACACT 58.650 33.333 0.00 0.00 39.54 3.55
2944 6514 7.593644 GGTGAAGTTAATTGACCACAAATACAC 59.406 37.037 10.44 0.00 44.05 2.90
2945 6515 7.255660 GGGTGAAGTTAATTGACCACAAATACA 60.256 37.037 3.30 0.00 46.24 2.29
2946 6516 7.088272 GGGTGAAGTTAATTGACCACAAATAC 58.912 38.462 3.30 0.00 46.24 1.89
2947 6517 6.778069 TGGGTGAAGTTAATTGACCACAAATA 59.222 34.615 3.30 0.00 46.24 1.40
2948 6518 5.600484 TGGGTGAAGTTAATTGACCACAAAT 59.400 36.000 3.30 0.00 46.24 2.32
2949 6519 4.956700 TGGGTGAAGTTAATTGACCACAAA 59.043 37.500 3.30 0.00 46.24 2.83
2950 6520 4.537751 TGGGTGAAGTTAATTGACCACAA 58.462 39.130 3.30 0.00 46.24 3.33
2951 6521 4.141287 CTGGGTGAAGTTAATTGACCACA 58.859 43.478 3.30 0.00 46.24 4.17
2952 6522 3.506067 CCTGGGTGAAGTTAATTGACCAC 59.494 47.826 3.30 0.00 46.24 4.16
2953 6523 3.761897 CCTGGGTGAAGTTAATTGACCA 58.238 45.455 3.30 0.00 46.24 4.02
2954 6524 2.492088 GCCTGGGTGAAGTTAATTGACC 59.508 50.000 0.00 0.00 43.90 4.02
2955 6525 2.492088 GGCCTGGGTGAAGTTAATTGAC 59.508 50.000 0.00 0.00 0.00 3.18
2956 6526 2.556559 GGGCCTGGGTGAAGTTAATTGA 60.557 50.000 0.84 0.00 0.00 2.57
2957 6527 1.824852 GGGCCTGGGTGAAGTTAATTG 59.175 52.381 0.84 0.00 0.00 2.32
2958 6528 1.716503 AGGGCCTGGGTGAAGTTAATT 59.283 47.619 4.50 0.00 0.00 1.40
2959 6529 1.382914 AGGGCCTGGGTGAAGTTAAT 58.617 50.000 4.50 0.00 0.00 1.40
2960 6530 2.047769 TAGGGCCTGGGTGAAGTTAA 57.952 50.000 18.53 0.00 0.00 2.01
2961 6531 2.124411 GATAGGGCCTGGGTGAAGTTA 58.876 52.381 18.53 0.00 0.00 2.24
2962 6532 0.919710 GATAGGGCCTGGGTGAAGTT 59.080 55.000 18.53 0.00 0.00 2.66
2963 6533 0.988678 GGATAGGGCCTGGGTGAAGT 60.989 60.000 18.53 0.00 0.00 3.01
2964 6534 1.709994 GGGATAGGGCCTGGGTGAAG 61.710 65.000 18.53 0.00 0.00 3.02
2965 6535 1.696314 GGGATAGGGCCTGGGTGAA 60.696 63.158 18.53 0.00 0.00 3.18
2966 6536 2.039831 GGGATAGGGCCTGGGTGA 60.040 66.667 18.53 0.00 0.00 4.02
2967 6537 3.178611 GGGGATAGGGCCTGGGTG 61.179 72.222 18.53 0.00 0.00 4.61
2968 6538 4.900259 CGGGGATAGGGCCTGGGT 62.900 72.222 18.53 1.24 0.00 4.51
2969 6539 4.900259 ACGGGGATAGGGCCTGGG 62.900 72.222 18.53 0.95 0.00 4.45
2970 6540 2.772622 AACGGGGATAGGGCCTGG 60.773 66.667 18.53 0.57 0.00 4.45
2971 6541 1.766461 AGAACGGGGATAGGGCCTG 60.766 63.158 18.53 0.00 0.00 4.85
2972 6542 1.766461 CAGAACGGGGATAGGGCCT 60.766 63.158 12.58 12.58 0.00 5.19
2973 6543 2.819284 CCAGAACGGGGATAGGGCC 61.819 68.421 0.00 0.00 0.00 5.80
2974 6544 0.761702 TACCAGAACGGGGATAGGGC 60.762 60.000 0.00 0.00 40.22 5.19
2975 6545 1.797320 TTACCAGAACGGGGATAGGG 58.203 55.000 0.00 0.00 40.22 3.53
2976 6546 5.024118 AGATATTACCAGAACGGGGATAGG 58.976 45.833 0.00 0.00 40.22 2.57
2977 6547 5.952947 AGAGATATTACCAGAACGGGGATAG 59.047 44.000 0.00 0.00 40.22 2.08
2978 6548 5.900437 AGAGATATTACCAGAACGGGGATA 58.100 41.667 0.00 0.00 40.22 2.59
2979 6549 4.753186 AGAGATATTACCAGAACGGGGAT 58.247 43.478 0.00 0.00 40.22 3.85
2980 6550 4.194678 AGAGATATTACCAGAACGGGGA 57.805 45.455 0.00 0.00 40.22 4.81
2981 6551 4.957684 AAGAGATATTACCAGAACGGGG 57.042 45.455 0.00 0.00 40.22 5.73
2982 6552 5.471257 GCTAAGAGATATTACCAGAACGGG 58.529 45.833 0.00 0.00 40.22 5.28
2983 6553 5.471257 GGCTAAGAGATATTACCAGAACGG 58.529 45.833 0.00 0.00 42.50 4.44
2984 6554 5.010719 TGGGCTAAGAGATATTACCAGAACG 59.989 44.000 0.00 0.00 0.00 3.95
2985 6555 6.420913 TGGGCTAAGAGATATTACCAGAAC 57.579 41.667 0.00 0.00 0.00 3.01
2986 6556 6.787458 TCATGGGCTAAGAGATATTACCAGAA 59.213 38.462 0.00 0.00 0.00 3.02
2987 6557 6.322931 TCATGGGCTAAGAGATATTACCAGA 58.677 40.000 0.00 0.00 0.00 3.86
2988 6558 6.351711 CCTCATGGGCTAAGAGATATTACCAG 60.352 46.154 4.56 0.00 0.00 4.00
2989 6559 5.485353 CCTCATGGGCTAAGAGATATTACCA 59.515 44.000 4.56 0.00 0.00 3.25
2990 6560 5.983540 CCTCATGGGCTAAGAGATATTACC 58.016 45.833 4.56 0.00 0.00 2.85
3005 6575 2.785868 GCACTGTTAGCCTCATGGG 58.214 57.895 0.00 0.00 38.36 4.00
3013 6583 6.265422 AGGGAATTTAATATGGCACTGTTAGC 59.735 38.462 0.00 0.00 0.00 3.09
3014 6584 7.502226 TGAGGGAATTTAATATGGCACTGTTAG 59.498 37.037 0.00 0.00 0.00 2.34
3015 6585 7.350382 TGAGGGAATTTAATATGGCACTGTTA 58.650 34.615 0.00 0.00 0.00 2.41
3016 6586 6.194235 TGAGGGAATTTAATATGGCACTGTT 58.806 36.000 0.00 0.00 0.00 3.16
3017 6587 5.765510 TGAGGGAATTTAATATGGCACTGT 58.234 37.500 0.00 0.00 0.00 3.55
3018 6588 6.322201 ACTTGAGGGAATTTAATATGGCACTG 59.678 38.462 0.00 0.00 0.00 3.66
3019 6589 6.435164 ACTTGAGGGAATTTAATATGGCACT 58.565 36.000 0.00 0.00 0.00 4.40
3020 6590 6.715347 ACTTGAGGGAATTTAATATGGCAC 57.285 37.500 0.00 0.00 0.00 5.01
3021 6591 7.364585 CCAAACTTGAGGGAATTTAATATGGCA 60.365 37.037 0.00 0.00 0.00 4.92
3022 6592 6.986231 CCAAACTTGAGGGAATTTAATATGGC 59.014 38.462 0.00 0.00 0.00 4.40
3035 6605 0.184933 TGGTGTCCCAAACTTGAGGG 59.815 55.000 0.00 0.00 46.90 4.30
3036 6606 3.819245 TGGTGTCCCAAACTTGAGG 57.181 52.632 0.00 0.00 37.98 3.86
3045 6615 3.897122 GGTGGCCTTGGTGTCCCA 61.897 66.667 3.32 0.00 39.65 4.37
3046 6616 2.937959 TTTGGTGGCCTTGGTGTCCC 62.938 60.000 3.32 0.00 0.00 4.46
3047 6617 1.456705 TTTGGTGGCCTTGGTGTCC 60.457 57.895 3.32 0.00 0.00 4.02
3048 6618 0.755327 AGTTTGGTGGCCTTGGTGTC 60.755 55.000 3.32 0.00 0.00 3.67
3049 6619 0.755327 GAGTTTGGTGGCCTTGGTGT 60.755 55.000 3.32 0.00 0.00 4.16
3050 6620 1.463553 GGAGTTTGGTGGCCTTGGTG 61.464 60.000 3.32 0.00 0.00 4.17
3051 6621 1.152546 GGAGTTTGGTGGCCTTGGT 60.153 57.895 3.32 0.00 0.00 3.67
3052 6622 0.469892 AAGGAGTTTGGTGGCCTTGG 60.470 55.000 3.32 0.00 39.18 3.61
3053 6623 1.413118 AAAGGAGTTTGGTGGCCTTG 58.587 50.000 3.32 0.00 40.44 3.61
3054 6624 2.174685 AAAAGGAGTTTGGTGGCCTT 57.825 45.000 3.32 0.00 42.27 4.35
3055 6625 2.039418 GAAAAAGGAGTTTGGTGGCCT 58.961 47.619 3.32 0.00 0.00 5.19
3056 6626 2.039418 AGAAAAAGGAGTTTGGTGGCC 58.961 47.619 0.00 0.00 0.00 5.36
3057 6627 2.803133 GCAGAAAAAGGAGTTTGGTGGC 60.803 50.000 0.00 0.00 0.00 5.01
3058 6628 2.543653 CGCAGAAAAAGGAGTTTGGTGG 60.544 50.000 0.00 0.00 0.00 4.61
3059 6629 2.357637 TCGCAGAAAAAGGAGTTTGGTG 59.642 45.455 0.00 0.00 0.00 4.17
3060 6630 2.650322 TCGCAGAAAAAGGAGTTTGGT 58.350 42.857 0.00 0.00 0.00 3.67
3061 6631 3.923017 ATCGCAGAAAAAGGAGTTTGG 57.077 42.857 0.00 0.00 43.58 3.28
3062 6632 6.182039 TGATATCGCAGAAAAAGGAGTTTG 57.818 37.500 0.00 0.00 43.58 2.93
3063 6633 6.349363 GGTTGATATCGCAGAAAAAGGAGTTT 60.349 38.462 0.00 0.00 43.58 2.66
3064 6634 5.123979 GGTTGATATCGCAGAAAAAGGAGTT 59.876 40.000 0.00 0.00 43.58 3.01
3065 6635 4.636206 GGTTGATATCGCAGAAAAAGGAGT 59.364 41.667 0.00 0.00 43.58 3.85
3066 6636 4.035675 GGGTTGATATCGCAGAAAAAGGAG 59.964 45.833 0.00 0.00 43.58 3.69
3067 6637 3.945285 GGGTTGATATCGCAGAAAAAGGA 59.055 43.478 0.00 0.00 43.58 3.36
3068 6638 3.066760 GGGGTTGATATCGCAGAAAAAGG 59.933 47.826 0.00 0.00 43.58 3.11
3069 6639 3.066760 GGGGGTTGATATCGCAGAAAAAG 59.933 47.826 0.00 0.00 43.58 2.27
3070 6640 3.020984 GGGGGTTGATATCGCAGAAAAA 58.979 45.455 0.00 0.00 43.58 1.94
3071 6641 2.025793 TGGGGGTTGATATCGCAGAAAA 60.026 45.455 0.00 0.00 43.58 2.29
3072 6642 1.562008 TGGGGGTTGATATCGCAGAAA 59.438 47.619 0.00 0.00 43.58 2.52
3073 6643 1.208706 TGGGGGTTGATATCGCAGAA 58.791 50.000 0.00 0.00 43.58 3.02
3074 6644 1.208706 TTGGGGGTTGATATCGCAGA 58.791 50.000 0.00 0.00 45.75 4.26
3075 6645 2.276732 ATTGGGGGTTGATATCGCAG 57.723 50.000 0.00 0.00 0.00 5.18
3076 6646 2.746279 AATTGGGGGTTGATATCGCA 57.254 45.000 0.00 0.00 0.00 5.10
3077 6647 2.488153 GCTAATTGGGGGTTGATATCGC 59.512 50.000 0.00 0.00 0.00 4.58
3078 6648 4.021102 AGCTAATTGGGGGTTGATATCG 57.979 45.455 0.00 0.00 0.00 2.92
3079 6649 6.374417 TCTAGCTAATTGGGGGTTGATATC 57.626 41.667 0.00 0.00 0.00 1.63
3080 6650 6.505344 TCATCTAGCTAATTGGGGGTTGATAT 59.495 38.462 0.00 0.00 0.00 1.63
3081 6651 5.849475 TCATCTAGCTAATTGGGGGTTGATA 59.151 40.000 0.00 0.00 0.00 2.15
3082 6652 4.665009 TCATCTAGCTAATTGGGGGTTGAT 59.335 41.667 0.00 0.00 0.00 2.57
3083 6653 4.044308 TCATCTAGCTAATTGGGGGTTGA 58.956 43.478 0.00 0.00 0.00 3.18
3084 6654 4.437682 TCATCTAGCTAATTGGGGGTTG 57.562 45.455 0.00 0.00 0.00 3.77
3085 6655 6.977244 ATATCATCTAGCTAATTGGGGGTT 57.023 37.500 0.00 0.00 0.00 4.11
3086 6656 6.977244 AATATCATCTAGCTAATTGGGGGT 57.023 37.500 0.00 0.00 0.00 4.95
3087 6657 9.347240 CATAAATATCATCTAGCTAATTGGGGG 57.653 37.037 0.00 0.00 0.00 5.40
3138 6708 2.519013 GTCCCAGATGGCTCACTTTTT 58.481 47.619 0.00 0.00 0.00 1.94
3139 6709 1.611673 CGTCCCAGATGGCTCACTTTT 60.612 52.381 0.00 0.00 0.00 2.27
3140 6710 0.036010 CGTCCCAGATGGCTCACTTT 60.036 55.000 0.00 0.00 0.00 2.66
3141 6711 1.194781 ACGTCCCAGATGGCTCACTT 61.195 55.000 0.00 0.00 0.00 3.16
3142 6712 1.610673 ACGTCCCAGATGGCTCACT 60.611 57.895 0.00 0.00 0.00 3.41
3143 6713 1.448540 CACGTCCCAGATGGCTCAC 60.449 63.158 0.00 0.00 0.00 3.51
3144 6714 0.977627 ATCACGTCCCAGATGGCTCA 60.978 55.000 0.00 0.00 0.00 4.26
3145 6715 1.000283 CTATCACGTCCCAGATGGCTC 60.000 57.143 0.00 0.00 0.00 4.70
3146 6716 1.043816 CTATCACGTCCCAGATGGCT 58.956 55.000 0.00 0.00 0.00 4.75
3147 6717 0.601311 GCTATCACGTCCCAGATGGC 60.601 60.000 6.26 6.26 40.63 4.40
3148 6718 1.043816 AGCTATCACGTCCCAGATGG 58.956 55.000 0.00 0.00 0.00 3.51
3149 6719 2.868583 CAAAGCTATCACGTCCCAGATG 59.131 50.000 0.00 0.00 0.00 2.90
3150 6720 2.766263 TCAAAGCTATCACGTCCCAGAT 59.234 45.455 0.00 0.00 0.00 2.90
3151 6721 2.176045 TCAAAGCTATCACGTCCCAGA 58.824 47.619 0.00 0.00 0.00 3.86
3152 6722 2.672961 TCAAAGCTATCACGTCCCAG 57.327 50.000 0.00 0.00 0.00 4.45
3153 6723 2.419990 CCATCAAAGCTATCACGTCCCA 60.420 50.000 0.00 0.00 0.00 4.37
3154 6724 2.213499 CCATCAAAGCTATCACGTCCC 58.787 52.381 0.00 0.00 0.00 4.46
3155 6725 1.599542 GCCATCAAAGCTATCACGTCC 59.400 52.381 0.00 0.00 0.00 4.79
3156 6726 1.599542 GGCCATCAAAGCTATCACGTC 59.400 52.381 0.00 0.00 0.00 4.34
3157 6727 1.668419 GGCCATCAAAGCTATCACGT 58.332 50.000 0.00 0.00 0.00 4.49
3158 6728 0.947244 GGGCCATCAAAGCTATCACG 59.053 55.000 4.39 0.00 0.00 4.35
3159 6729 1.678101 GTGGGCCATCAAAGCTATCAC 59.322 52.381 10.70 0.00 0.00 3.06
3160 6730 1.565759 AGTGGGCCATCAAAGCTATCA 59.434 47.619 10.70 0.00 0.00 2.15
3161 6731 2.355010 AGTGGGCCATCAAAGCTATC 57.645 50.000 10.70 0.00 0.00 2.08
3162 6732 2.762327 CAAAGTGGGCCATCAAAGCTAT 59.238 45.455 10.70 0.00 0.00 2.97
3163 6733 2.170166 CAAAGTGGGCCATCAAAGCTA 58.830 47.619 10.70 0.00 0.00 3.32
3164 6734 0.971386 CAAAGTGGGCCATCAAAGCT 59.029 50.000 10.70 0.00 0.00 3.74
3165 6735 0.037046 CCAAAGTGGGCCATCAAAGC 60.037 55.000 10.70 0.00 32.67 3.51
3166 6736 1.631405 TCCAAAGTGGGCCATCAAAG 58.369 50.000 10.70 0.00 38.32 2.77
3167 6737 2.094100 TTCCAAAGTGGGCCATCAAA 57.906 45.000 10.70 0.00 38.32 2.69
3168 6738 1.691434 GTTTCCAAAGTGGGCCATCAA 59.309 47.619 10.70 0.00 38.32 2.57
3169 6739 1.133199 AGTTTCCAAAGTGGGCCATCA 60.133 47.619 10.70 0.00 38.32 3.07
3170 6740 1.632589 AGTTTCCAAAGTGGGCCATC 58.367 50.000 10.70 3.41 38.32 3.51
3171 6741 1.693606 CAAGTTTCCAAAGTGGGCCAT 59.306 47.619 10.70 0.00 38.32 4.40
3172 6742 1.118838 CAAGTTTCCAAAGTGGGCCA 58.881 50.000 0.00 0.00 38.32 5.36
3173 6743 1.408969 TCAAGTTTCCAAAGTGGGCC 58.591 50.000 0.00 0.00 38.32 5.80
3174 6744 2.627699 TGATCAAGTTTCCAAAGTGGGC 59.372 45.455 0.00 0.00 38.32 5.36
3175 6745 3.304659 CGTGATCAAGTTTCCAAAGTGGG 60.305 47.826 0.00 0.00 38.32 4.61
3176 6746 3.304659 CCGTGATCAAGTTTCCAAAGTGG 60.305 47.826 7.88 0.00 39.43 4.00
3177 6747 3.563808 TCCGTGATCAAGTTTCCAAAGTG 59.436 43.478 7.88 0.00 0.00 3.16
3178 6748 3.564225 GTCCGTGATCAAGTTTCCAAAGT 59.436 43.478 7.88 0.00 0.00 2.66
3179 6749 3.563808 TGTCCGTGATCAAGTTTCCAAAG 59.436 43.478 7.88 0.00 0.00 2.77
3180 6750 3.546724 TGTCCGTGATCAAGTTTCCAAA 58.453 40.909 7.88 0.00 0.00 3.28
3181 6751 3.201353 TGTCCGTGATCAAGTTTCCAA 57.799 42.857 7.88 0.00 0.00 3.53
3182 6752 2.920724 TGTCCGTGATCAAGTTTCCA 57.079 45.000 7.88 0.00 0.00 3.53
3183 6753 3.334691 TGATGTCCGTGATCAAGTTTCC 58.665 45.455 7.88 0.00 0.00 3.13
3184 6754 4.962693 CTTGATGTCCGTGATCAAGTTTC 58.037 43.478 15.25 0.35 46.33 2.78
3189 6759 4.529109 TGTACTTGATGTCCGTGATCAA 57.471 40.909 0.00 0.00 37.46 2.57
3190 6760 4.736126 ATGTACTTGATGTCCGTGATCA 57.264 40.909 0.00 0.00 0.00 2.92
3191 6761 5.223382 CCTATGTACTTGATGTCCGTGATC 58.777 45.833 0.00 0.00 0.00 2.92
3192 6762 4.039245 CCCTATGTACTTGATGTCCGTGAT 59.961 45.833 0.00 0.00 0.00 3.06
3193 6763 3.383505 CCCTATGTACTTGATGTCCGTGA 59.616 47.826 0.00 0.00 0.00 4.35
3194 6764 3.383505 TCCCTATGTACTTGATGTCCGTG 59.616 47.826 0.00 0.00 0.00 4.94
3195 6765 3.638860 TCCCTATGTACTTGATGTCCGT 58.361 45.455 0.00 0.00 0.00 4.69
3196 6766 4.873746 ATCCCTATGTACTTGATGTCCG 57.126 45.455 0.00 0.00 0.00 4.79
3197 6767 6.919775 AGTATCCCTATGTACTTGATGTCC 57.080 41.667 0.00 0.00 0.00 4.02
3198 6768 7.394923 AGCTAGTATCCCTATGTACTTGATGTC 59.605 40.741 0.00 0.00 33.48 3.06
3199 6769 7.242359 AGCTAGTATCCCTATGTACTTGATGT 58.758 38.462 0.00 0.00 33.48 3.06
3200 6770 7.710676 AGCTAGTATCCCTATGTACTTGATG 57.289 40.000 0.00 0.00 33.48 3.07
3201 6771 9.415008 CATAGCTAGTATCCCTATGTACTTGAT 57.585 37.037 0.00 0.00 35.73 2.57
3202 6772 7.339721 GCATAGCTAGTATCCCTATGTACTTGA 59.660 40.741 12.89 0.00 40.17 3.02
3203 6773 7.122799 TGCATAGCTAGTATCCCTATGTACTTG 59.877 40.741 12.89 0.00 40.17 3.16
3204 6774 7.182760 TGCATAGCTAGTATCCCTATGTACTT 58.817 38.462 12.89 0.00 40.17 2.24
3205 6775 6.732487 TGCATAGCTAGTATCCCTATGTACT 58.268 40.000 12.89 0.00 40.17 2.73
3206 6776 7.406031 TTGCATAGCTAGTATCCCTATGTAC 57.594 40.000 12.89 0.00 40.17 2.90
3207 6777 6.096987 GCTTGCATAGCTAGTATCCCTATGTA 59.903 42.308 11.98 7.99 46.77 2.29
3208 6778 5.105146 GCTTGCATAGCTAGTATCCCTATGT 60.105 44.000 11.98 0.00 46.77 2.29
3209 6779 5.355596 GCTTGCATAGCTAGTATCCCTATG 58.644 45.833 11.98 8.97 46.77 2.23
3210 6780 5.606348 GCTTGCATAGCTAGTATCCCTAT 57.394 43.478 11.98 0.00 46.77 2.57
3212 6782 3.971245 GCTTGCATAGCTAGTATCCCT 57.029 47.619 11.98 0.00 46.77 4.20
3253 6823 2.559440 GGAGACTGCTTGGCTATGAAG 58.441 52.381 0.00 0.00 31.30 3.02
3254 6824 1.210478 GGGAGACTGCTTGGCTATGAA 59.790 52.381 0.00 0.00 31.30 2.57
3255 6825 0.833287 GGGAGACTGCTTGGCTATGA 59.167 55.000 0.00 0.00 31.30 2.15
3256 6826 0.835941 AGGGAGACTGCTTGGCTATG 59.164 55.000 0.00 0.00 31.30 2.23
3257 6827 1.589414 AAGGGAGACTGCTTGGCTAT 58.411 50.000 0.00 0.00 31.30 2.97
3258 6828 1.279271 GAAAGGGAGACTGCTTGGCTA 59.721 52.381 0.00 0.00 31.30 3.93
3259 6829 0.037447 GAAAGGGAGACTGCTTGGCT 59.963 55.000 0.00 0.00 36.16 4.75
3260 6830 0.962855 GGAAAGGGAGACTGCTTGGC 60.963 60.000 0.00 0.00 0.00 4.52
3261 6831 0.401738 TGGAAAGGGAGACTGCTTGG 59.598 55.000 0.00 0.00 0.00 3.61
3262 6832 1.528129 GTGGAAAGGGAGACTGCTTG 58.472 55.000 0.00 0.00 0.00 4.01
3263 6833 0.402121 GGTGGAAAGGGAGACTGCTT 59.598 55.000 0.00 0.00 0.00 3.91
3264 6834 1.492993 GGGTGGAAAGGGAGACTGCT 61.493 60.000 0.00 0.00 0.00 4.24
3265 6835 1.002011 GGGTGGAAAGGGAGACTGC 60.002 63.158 0.00 0.00 0.00 4.40
3266 6836 0.036875 GTGGGTGGAAAGGGAGACTG 59.963 60.000 0.00 0.00 0.00 3.51
3267 6837 1.134438 GGTGGGTGGAAAGGGAGACT 61.134 60.000 0.00 0.00 0.00 3.24
3268 6838 1.379146 GGTGGGTGGAAAGGGAGAC 59.621 63.158 0.00 0.00 0.00 3.36
3269 6839 0.699577 TTGGTGGGTGGAAAGGGAGA 60.700 55.000 0.00 0.00 0.00 3.71
3270 6840 0.187361 TTTGGTGGGTGGAAAGGGAG 59.813 55.000 0.00 0.00 0.00 4.30
3271 6841 0.187361 CTTTGGTGGGTGGAAAGGGA 59.813 55.000 0.00 0.00 0.00 4.20
3272 6842 1.471829 GCTTTGGTGGGTGGAAAGGG 61.472 60.000 0.00 0.00 0.00 3.95
3273 6843 1.805428 CGCTTTGGTGGGTGGAAAGG 61.805 60.000 0.00 0.00 0.00 3.11
3274 6844 0.821711 TCGCTTTGGTGGGTGGAAAG 60.822 55.000 0.00 0.00 0.00 2.62
3275 6845 0.178975 ATCGCTTTGGTGGGTGGAAA 60.179 50.000 0.00 0.00 0.00 3.13
3276 6846 0.178975 AATCGCTTTGGTGGGTGGAA 60.179 50.000 0.00 0.00 0.00 3.53
3277 6847 0.893270 CAATCGCTTTGGTGGGTGGA 60.893 55.000 0.00 0.00 0.00 4.02
3278 6848 0.893270 TCAATCGCTTTGGTGGGTGG 60.893 55.000 0.00 0.00 35.92 4.61
3279 6849 1.135315 CATCAATCGCTTTGGTGGGTG 60.135 52.381 3.93 0.00 41.87 4.61
3280 6850 1.176527 CATCAATCGCTTTGGTGGGT 58.823 50.000 3.93 0.00 41.87 4.51
3281 6851 1.462616 TCATCAATCGCTTTGGTGGG 58.537 50.000 10.16 0.00 45.02 4.61
3282 6852 3.788333 AATCATCAATCGCTTTGGTGG 57.212 42.857 10.16 0.00 45.02 4.61
3283 6853 6.974048 TGATTAAATCATCAATCGCTTTGGTG 59.026 34.615 5.18 5.18 46.10 4.17
3284 6854 7.099266 TGATTAAATCATCAATCGCTTTGGT 57.901 32.000 0.00 0.00 34.52 3.67
3285 6855 7.488792 TGTTGATTAAATCATCAATCGCTTTGG 59.511 33.333 0.00 0.00 43.47 3.28
3286 6856 8.397215 TGTTGATTAAATCATCAATCGCTTTG 57.603 30.769 0.00 0.00 43.47 2.77
3287 6857 8.984891 TTGTTGATTAAATCATCAATCGCTTT 57.015 26.923 7.69 0.00 43.47 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.