Multiple sequence alignment - TraesCS3D01G512500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G512500 chr3D 100.000 3472 0 0 1 3472 596992921 596996392 0.000000e+00 6412
1 TraesCS3D01G512500 chr3D 89.902 1525 118 18 983 2484 597265950 597264439 0.000000e+00 1930
2 TraesCS3D01G512500 chr3D 88.672 256 28 1 2509 2763 597264339 597264084 9.360000e-81 311
3 TraesCS3D01G512500 chr3A 92.850 1888 96 14 627 2484 727180281 727182159 0.000000e+00 2702
4 TraesCS3D01G512500 chr3A 88.221 815 91 3 1046 1860 727365425 727366234 0.000000e+00 968
5 TraesCS3D01G512500 chr3A 87.521 593 46 9 1 593 727179517 727180081 0.000000e+00 660
6 TraesCS3D01G512500 chr3A 87.456 287 28 4 2796 3082 727372018 727372296 1.200000e-84 324
7 TraesCS3D01G512500 chr3A 88.163 245 27 2 3 246 55507915 55507672 1.220000e-74 291
8 TraesCS3D01G512500 chr3B 94.133 1500 88 0 987 2486 803513069 803511570 0.000000e+00 2283
9 TraesCS3D01G512500 chr3B 87.771 1521 155 17 983 2483 804113469 804111960 0.000000e+00 1749
10 TraesCS3D01G512500 chr3B 95.368 993 45 1 1517 2509 803334588 803333597 0.000000e+00 1578
11 TraesCS3D01G512500 chr3B 95.065 993 49 0 1517 2509 803364479 803363487 0.000000e+00 1563
12 TraesCS3D01G512500 chr3B 89.457 645 47 5 2509 3138 803540656 803541294 0.000000e+00 795
13 TraesCS3D01G512500 chr3B 86.562 640 63 15 2509 3137 804111669 804111042 0.000000e+00 684
14 TraesCS3D01G512500 chr3B 89.820 501 37 5 2514 3000 803363451 803362951 6.320000e-177 630
15 TraesCS3D01G512500 chr3B 89.421 501 39 5 2514 3000 803461190 803460690 1.370000e-173 619
16 TraesCS3D01G512500 chr3B 89.421 501 36 6 2514 3000 803333561 803333064 1.770000e-172 616
17 TraesCS3D01G512500 chr3B 89.222 501 40 5 2514 3000 803511506 803511006 6.370000e-172 614
18 TraesCS3D01G512500 chr3B 92.950 383 26 1 1115 1497 803473086 803472705 1.090000e-154 556
19 TraesCS3D01G512500 chr3B 87.209 344 29 1 2662 2990 803561584 803561927 9.100000e-101 377
20 TraesCS3D01G512500 chr3B 94.558 147 8 0 2992 3138 803324890 803324744 9.690000e-56 228
21 TraesCS3D01G512500 chr3B 93.878 147 9 0 2992 3138 803354510 803354364 4.510000e-54 222
22 TraesCS3D01G512500 chr3B 93.878 147 9 0 2992 3138 803452385 803452239 4.510000e-54 222
23 TraesCS3D01G512500 chr3B 93.878 147 9 0 2992 3138 803496997 803496851 4.510000e-54 222
24 TraesCS3D01G512500 chr2A 88.558 1512 147 9 988 2484 605310921 605312421 0.000000e+00 1810
25 TraesCS3D01G512500 chrUn 95.276 995 47 0 1517 2511 291468965 291469959 0.000000e+00 1578
26 TraesCS3D01G512500 chrUn 95.368 993 45 1 1517 2509 303788917 303789908 0.000000e+00 1578
27 TraesCS3D01G512500 chrUn 95.368 993 45 1 1517 2509 308985222 308986213 0.000000e+00 1578
28 TraesCS3D01G512500 chrUn 89.079 467 37 5 2511 2963 303789941 303790407 5.030000e-158 568
29 TraesCS3D01G512500 chrUn 89.079 467 37 5 2511 2963 308986246 308986712 5.030000e-158 568
30 TraesCS3D01G512500 chrUn 83.455 550 62 13 2509 3054 277308125 277307601 5.210000e-133 484
31 TraesCS3D01G512500 chrUn 93.878 147 9 0 2992 3138 292088140 292087994 4.510000e-54 222
32 TraesCS3D01G512500 chrUn 93.878 147 9 0 2992 3138 312304715 312304569 4.510000e-54 222
33 TraesCS3D01G512500 chr4B 84.848 1518 169 33 997 2475 86359292 86360787 0.000000e+00 1472
34 TraesCS3D01G512500 chr4A 86.923 1170 119 20 997 2148 538906767 538905614 0.000000e+00 1282
35 TraesCS3D01G512500 chr4D 90.612 245 21 2 3 246 68468658 68468901 1.200000e-84 324
36 TraesCS3D01G512500 chr4D 87.308 260 33 0 3 262 453518237 453518496 7.290000e-77 298
37 TraesCS3D01G512500 chr6D 87.970 266 28 2 3 268 468006771 468006510 9.360000e-81 311
38 TraesCS3D01G512500 chr6D 86.100 259 36 0 3 261 246966603 246966861 2.640000e-71 279
39 TraesCS3D01G512500 chr1D 86.923 260 33 1 3 262 356216783 356217041 1.220000e-74 291
40 TraesCS3D01G512500 chr1D 86.100 259 36 0 3 261 480795241 480794983 2.640000e-71 279
41 TraesCS3D01G512500 chr1D 85.240 271 36 4 3 271 281506039 281505771 3.410000e-70 276
42 TraesCS3D01G512500 chr7A 84.496 129 20 0 298 426 491264038 491264166 1.010000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G512500 chr3D 596992921 596996392 3471 False 6412.0 6412 100.0000 1 3472 1 chr3D.!!$F1 3471
1 TraesCS3D01G512500 chr3D 597264084 597265950 1866 True 1120.5 1930 89.2870 983 2763 2 chr3D.!!$R1 1780
2 TraesCS3D01G512500 chr3A 727179517 727182159 2642 False 1681.0 2702 90.1855 1 2484 2 chr3A.!!$F3 2483
3 TraesCS3D01G512500 chr3A 727365425 727366234 809 False 968.0 968 88.2210 1046 1860 1 chr3A.!!$F1 814
4 TraesCS3D01G512500 chr3B 803511006 803513069 2063 True 1448.5 2283 91.6775 987 3000 2 chr3B.!!$R9 2013
5 TraesCS3D01G512500 chr3B 804111042 804113469 2427 True 1216.5 1749 87.1665 983 3137 2 chr3B.!!$R10 2154
6 TraesCS3D01G512500 chr3B 803333064 803334588 1524 True 1097.0 1578 92.3945 1517 3000 2 chr3B.!!$R7 1483
7 TraesCS3D01G512500 chr3B 803362951 803364479 1528 True 1096.5 1563 92.4425 1517 3000 2 chr3B.!!$R8 1483
8 TraesCS3D01G512500 chr3B 803540656 803541294 638 False 795.0 795 89.4570 2509 3138 1 chr3B.!!$F1 629
9 TraesCS3D01G512500 chr3B 803460690 803461190 500 True 619.0 619 89.4210 2514 3000 1 chr3B.!!$R4 486
10 TraesCS3D01G512500 chr2A 605310921 605312421 1500 False 1810.0 1810 88.5580 988 2484 1 chr2A.!!$F1 1496
11 TraesCS3D01G512500 chrUn 291468965 291469959 994 False 1578.0 1578 95.2760 1517 2511 1 chrUn.!!$F1 994
12 TraesCS3D01G512500 chrUn 303788917 303790407 1490 False 1073.0 1578 92.2235 1517 2963 2 chrUn.!!$F2 1446
13 TraesCS3D01G512500 chrUn 308985222 308986712 1490 False 1073.0 1578 92.2235 1517 2963 2 chrUn.!!$F3 1446
14 TraesCS3D01G512500 chrUn 277307601 277308125 524 True 484.0 484 83.4550 2509 3054 1 chrUn.!!$R1 545
15 TraesCS3D01G512500 chr4B 86359292 86360787 1495 False 1472.0 1472 84.8480 997 2475 1 chr4B.!!$F1 1478
16 TraesCS3D01G512500 chr4A 538905614 538906767 1153 True 1282.0 1282 86.9230 997 2148 1 chr4A.!!$R1 1151

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
871 1059 0.445436 GCCAACAAGCGAGATCACAG 59.555 55.000 0.00 0.00 0.00 3.66 F
2109 2343 1.963855 TCACCATGAACCGCGTTGG 60.964 57.895 4.92 6.55 46.41 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2186 2426 0.865111 TCACGTGTAGTTGCATGCAC 59.135 50.0 22.58 15.59 33.04 4.57 R
3263 3819 0.033796 TCTGGTCGACGGGATTACCT 60.034 55.0 9.92 0.00 36.97 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
149 150 2.087009 GTCGAAAGTGCCGAGGTCG 61.087 63.158 0.00 0.00 36.66 4.79
280 281 1.321474 CATGGTGGCGCTGGATTTAT 58.679 50.000 7.64 0.00 0.00 1.40
289 290 1.674908 GCTGGATTTATAAAGCGCGC 58.325 50.000 26.66 26.66 0.00 6.86
330 331 3.423154 CCGTGCGCCTGAGTTTCC 61.423 66.667 4.18 0.00 0.00 3.13
415 416 1.064357 CGTTTTGTACGGCCACTGTTT 59.936 47.619 2.24 0.00 46.42 2.83
432 433 3.325870 TGTTTGAGATGCTCTTACGTGG 58.674 45.455 0.00 0.00 0.00 4.94
433 434 2.672961 TTGAGATGCTCTTACGTGGG 57.327 50.000 0.00 0.00 0.00 4.61
469 470 6.378564 TGCCGTTCATTTCCTTTTTCCATATA 59.621 34.615 0.00 0.00 0.00 0.86
573 574 2.550606 TCACGCACTGTTGGAATTAACC 59.449 45.455 0.00 0.00 0.00 2.85
579 580 3.058501 CACTGTTGGAATTAACCACGACC 60.059 47.826 0.00 0.00 39.85 4.79
586 587 4.040706 TGGAATTAACCACGACCTACAGTT 59.959 41.667 0.00 0.00 34.77 3.16
591 592 2.037144 ACCACGACCTACAGTTTCAGT 58.963 47.619 0.00 0.00 0.00 3.41
592 593 2.035576 ACCACGACCTACAGTTTCAGTC 59.964 50.000 0.00 0.00 0.00 3.51
593 594 2.609737 CCACGACCTACAGTTTCAGTCC 60.610 54.545 0.00 0.00 0.00 3.85
594 595 1.268899 ACGACCTACAGTTTCAGTCCG 59.731 52.381 0.00 0.00 0.00 4.79
595 596 1.402456 CGACCTACAGTTTCAGTCCGG 60.402 57.143 0.00 0.00 0.00 5.14
596 597 1.891150 GACCTACAGTTTCAGTCCGGA 59.109 52.381 0.00 0.00 0.00 5.14
597 598 2.298163 GACCTACAGTTTCAGTCCGGAA 59.702 50.000 5.23 0.00 0.00 4.30
598 599 2.036862 ACCTACAGTTTCAGTCCGGAAC 59.963 50.000 5.23 0.00 0.00 3.62
669 856 4.463209 CACGTGTAACTTGTTGCCATAAG 58.537 43.478 7.58 0.00 30.50 1.73
748 935 2.351641 CGAGCTTATTTGCAACTTGCCA 60.352 45.455 11.29 0.00 44.23 4.92
871 1059 0.445436 GCCAACAAGCGAGATCACAG 59.555 55.000 0.00 0.00 0.00 3.66
945 1136 4.060900 CCAACAATCTATCCACCTGATCG 58.939 47.826 0.00 0.00 34.76 3.69
981 1179 7.355332 TCATCATATCATAGTTTCACGCATG 57.645 36.000 0.00 0.00 0.00 4.06
982 1180 6.930722 TCATCATATCATAGTTTCACGCATGT 59.069 34.615 0.00 0.00 0.00 3.21
1215 1416 4.090588 CCGGCGGGCAACTTCCTA 62.091 66.667 20.56 0.00 0.00 2.94
1216 1417 2.511600 CGGCGGGCAACTTCCTAG 60.512 66.667 0.00 0.00 0.00 3.02
1709 1935 3.390521 CCACGCTAGCCACTCCCA 61.391 66.667 9.66 0.00 0.00 4.37
2107 2341 1.964373 GGTCACCATGAACCGCGTT 60.964 57.895 4.92 0.00 0.00 4.84
2109 2343 1.963855 TCACCATGAACCGCGTTGG 60.964 57.895 4.92 6.55 46.41 3.77
2186 2426 1.742761 TGTACGTCTCCTTCCCTACG 58.257 55.000 0.00 0.00 40.99 3.51
2226 2491 6.237969 CGTGATCGATCGACTATATCATGAGT 60.238 42.308 23.91 5.55 36.23 3.41
2428 2693 2.411290 CAAGTGCCAAAACGCCGT 59.589 55.556 0.00 0.00 0.00 5.68
2512 3043 4.394300 GCTTGACTGGTTCGTCTACTAGTA 59.606 45.833 1.89 1.89 39.57 1.82
2596 3128 5.126061 AGCGGATTTGCTAATTCTCAATTGT 59.874 36.000 5.13 0.00 45.14 2.71
2639 3171 5.286082 AGAATGAACGTCATAAATTTTGCGC 59.714 36.000 0.00 0.00 35.76 6.09
2640 3172 3.238441 TGAACGTCATAAATTTTGCGCC 58.762 40.909 4.18 0.00 0.00 6.53
2744 3276 2.609825 GAGCGTATAGGTCGACGGA 58.390 57.895 9.92 0.00 39.46 4.69
2798 3330 2.405594 GCGTGTTGTGCCGTTTGA 59.594 55.556 0.00 0.00 0.00 2.69
2846 3395 5.710099 CACTTCTCTCTCCACTCTAGAACTT 59.290 44.000 0.00 0.00 0.00 2.66
2888 3442 9.310449 AGCTTTAACTCTCTATTCCCGATATTA 57.690 33.333 0.00 0.00 0.00 0.98
2954 3510 6.482641 TGCTAACTATGTCAAACAACCGTTAA 59.517 34.615 0.00 0.00 33.99 2.01
3026 3582 2.442413 TCAAAATGGCTTCTAACCGGG 58.558 47.619 6.32 0.00 0.00 5.73
3138 3694 4.107622 CGAGTGCCATGGAAAAATCAATC 58.892 43.478 18.40 10.42 0.00 2.67
3139 3695 4.142315 CGAGTGCCATGGAAAAATCAATCT 60.142 41.667 18.40 0.00 0.00 2.40
3140 3696 5.334724 AGTGCCATGGAAAAATCAATCTC 57.665 39.130 18.40 0.00 0.00 2.75
3141 3697 5.021458 AGTGCCATGGAAAAATCAATCTCT 58.979 37.500 18.40 0.00 0.00 3.10
3142 3698 6.189859 AGTGCCATGGAAAAATCAATCTCTA 58.810 36.000 18.40 0.00 0.00 2.43
3143 3699 6.096001 AGTGCCATGGAAAAATCAATCTCTAC 59.904 38.462 18.40 0.00 0.00 2.59
3144 3700 6.096001 GTGCCATGGAAAAATCAATCTCTACT 59.904 38.462 18.40 0.00 0.00 2.57
3145 3701 6.319658 TGCCATGGAAAAATCAATCTCTACTC 59.680 38.462 18.40 0.00 0.00 2.59
3146 3702 6.238869 GCCATGGAAAAATCAATCTCTACTCC 60.239 42.308 18.40 0.00 0.00 3.85
3147 3703 7.059156 CCATGGAAAAATCAATCTCTACTCCT 58.941 38.462 5.56 0.00 0.00 3.69
3148 3704 8.213679 CCATGGAAAAATCAATCTCTACTCCTA 58.786 37.037 5.56 0.00 0.00 2.94
3149 3705 9.618890 CATGGAAAAATCAATCTCTACTCCTAA 57.381 33.333 0.00 0.00 0.00 2.69
3150 3706 9.844257 ATGGAAAAATCAATCTCTACTCCTAAG 57.156 33.333 0.00 0.00 0.00 2.18
3151 3707 8.267894 TGGAAAAATCAATCTCTACTCCTAAGG 58.732 37.037 0.00 0.00 0.00 2.69
3152 3708 7.717436 GGAAAAATCAATCTCTACTCCTAAGGG 59.283 40.741 0.00 0.00 0.00 3.95
3153 3709 7.757242 AAAATCAATCTCTACTCCTAAGGGT 57.243 36.000 0.00 0.00 0.00 4.34
3154 3710 6.739331 AATCAATCTCTACTCCTAAGGGTG 57.261 41.667 0.00 0.00 0.00 4.61
3155 3711 5.467668 TCAATCTCTACTCCTAAGGGTGA 57.532 43.478 0.00 0.00 0.00 4.02
3156 3712 5.450453 TCAATCTCTACTCCTAAGGGTGAG 58.550 45.833 0.00 0.00 34.73 3.51
3157 3713 5.044030 TCAATCTCTACTCCTAAGGGTGAGT 60.044 44.000 0.00 0.00 43.85 3.41
3158 3714 4.949966 TCTCTACTCCTAAGGGTGAGTT 57.050 45.455 0.00 0.00 41.80 3.01
3159 3715 4.601084 TCTCTACTCCTAAGGGTGAGTTG 58.399 47.826 0.00 0.00 41.80 3.16
3160 3716 3.702045 CTCTACTCCTAAGGGTGAGTTGG 59.298 52.174 0.00 0.00 41.80 3.77
3161 3717 2.417719 ACTCCTAAGGGTGAGTTGGT 57.582 50.000 0.00 0.00 38.67 3.67
3162 3718 3.555117 ACTCCTAAGGGTGAGTTGGTA 57.445 47.619 0.00 0.00 38.67 3.25
3163 3719 3.442076 ACTCCTAAGGGTGAGTTGGTAG 58.558 50.000 0.00 0.00 38.67 3.18
3164 3720 3.181409 ACTCCTAAGGGTGAGTTGGTAGT 60.181 47.826 0.00 0.00 38.67 2.73
3165 3721 3.438183 TCCTAAGGGTGAGTTGGTAGTC 58.562 50.000 0.00 0.00 0.00 2.59
3166 3722 3.077088 TCCTAAGGGTGAGTTGGTAGTCT 59.923 47.826 0.00 0.00 0.00 3.24
3167 3723 3.447944 CCTAAGGGTGAGTTGGTAGTCTC 59.552 52.174 0.00 0.00 0.00 3.36
3168 3724 1.939980 AGGGTGAGTTGGTAGTCTCC 58.060 55.000 0.00 0.00 36.88 3.71
3169 3725 0.531200 GGGTGAGTTGGTAGTCTCCG 59.469 60.000 0.00 0.00 37.96 4.63
3170 3726 1.254954 GGTGAGTTGGTAGTCTCCGT 58.745 55.000 0.00 0.00 30.15 4.69
3171 3727 1.617357 GGTGAGTTGGTAGTCTCCGTT 59.383 52.381 0.00 0.00 30.15 4.44
3172 3728 2.352519 GGTGAGTTGGTAGTCTCCGTTC 60.353 54.545 0.00 0.00 30.15 3.95
3173 3729 1.891150 TGAGTTGGTAGTCTCCGTTCC 59.109 52.381 0.00 0.00 0.00 3.62
3174 3730 1.891150 GAGTTGGTAGTCTCCGTTCCA 59.109 52.381 0.00 0.00 0.00 3.53
3175 3731 2.496470 GAGTTGGTAGTCTCCGTTCCAT 59.504 50.000 0.00 0.00 0.00 3.41
3176 3732 2.233922 AGTTGGTAGTCTCCGTTCCATG 59.766 50.000 0.00 0.00 0.00 3.66
3177 3733 2.225382 TGGTAGTCTCCGTTCCATGA 57.775 50.000 0.00 0.00 0.00 3.07
3178 3734 2.747177 TGGTAGTCTCCGTTCCATGAT 58.253 47.619 0.00 0.00 0.00 2.45
3179 3735 3.104512 TGGTAGTCTCCGTTCCATGATT 58.895 45.455 0.00 0.00 0.00 2.57
3180 3736 3.517901 TGGTAGTCTCCGTTCCATGATTT 59.482 43.478 0.00 0.00 0.00 2.17
3181 3737 4.019681 TGGTAGTCTCCGTTCCATGATTTT 60.020 41.667 0.00 0.00 0.00 1.82
3182 3738 4.941873 GGTAGTCTCCGTTCCATGATTTTT 59.058 41.667 0.00 0.00 0.00 1.94
3198 3754 2.232622 TTTTTCGTCCCACCTCCCA 58.767 52.632 0.00 0.00 0.00 4.37
3199 3755 0.179012 TTTTTCGTCCCACCTCCCAC 60.179 55.000 0.00 0.00 0.00 4.61
3200 3756 2.059345 TTTTCGTCCCACCTCCCACC 62.059 60.000 0.00 0.00 0.00 4.61
3201 3757 2.976284 TTTCGTCCCACCTCCCACCT 62.976 60.000 0.00 0.00 0.00 4.00
3202 3758 2.928396 CGTCCCACCTCCCACCTT 60.928 66.667 0.00 0.00 0.00 3.50
3203 3759 2.955881 CGTCCCACCTCCCACCTTC 61.956 68.421 0.00 0.00 0.00 3.46
3204 3760 2.606519 TCCCACCTCCCACCTTCG 60.607 66.667 0.00 0.00 0.00 3.79
3205 3761 4.410400 CCCACCTCCCACCTTCGC 62.410 72.222 0.00 0.00 0.00 4.70
3206 3762 4.410400 CCACCTCCCACCTTCGCC 62.410 72.222 0.00 0.00 0.00 5.54
3207 3763 3.322466 CACCTCCCACCTTCGCCT 61.322 66.667 0.00 0.00 0.00 5.52
3208 3764 3.322466 ACCTCCCACCTTCGCCTG 61.322 66.667 0.00 0.00 0.00 4.85
3209 3765 4.101448 CCTCCCACCTTCGCCTGG 62.101 72.222 0.00 0.00 0.00 4.45
3210 3766 3.322466 CTCCCACCTTCGCCTGGT 61.322 66.667 0.00 0.00 38.53 4.00
3211 3767 2.852075 TCCCACCTTCGCCTGGTT 60.852 61.111 0.00 0.00 35.28 3.67
3212 3768 2.115266 CCCACCTTCGCCTGGTTT 59.885 61.111 0.00 0.00 35.28 3.27
3213 3769 1.128809 TCCCACCTTCGCCTGGTTTA 61.129 55.000 0.00 0.00 35.28 2.01
3214 3770 0.034477 CCCACCTTCGCCTGGTTTAT 60.034 55.000 0.00 0.00 35.28 1.40
3215 3771 1.615919 CCCACCTTCGCCTGGTTTATT 60.616 52.381 0.00 0.00 35.28 1.40
3216 3772 2.167662 CCACCTTCGCCTGGTTTATTT 58.832 47.619 0.00 0.00 35.28 1.40
3217 3773 2.163613 CCACCTTCGCCTGGTTTATTTC 59.836 50.000 0.00 0.00 35.28 2.17
3218 3774 2.081462 ACCTTCGCCTGGTTTATTTCG 58.919 47.619 0.00 0.00 33.34 3.46
3219 3775 2.081462 CCTTCGCCTGGTTTATTTCGT 58.919 47.619 0.00 0.00 0.00 3.85
3220 3776 2.095372 CCTTCGCCTGGTTTATTTCGTC 59.905 50.000 0.00 0.00 0.00 4.20
3221 3777 2.754946 TCGCCTGGTTTATTTCGTCT 57.245 45.000 0.00 0.00 0.00 4.18
3222 3778 2.343101 TCGCCTGGTTTATTTCGTCTG 58.657 47.619 0.00 0.00 0.00 3.51
3223 3779 2.028839 TCGCCTGGTTTATTTCGTCTGA 60.029 45.455 0.00 0.00 0.00 3.27
3224 3780 2.936498 CGCCTGGTTTATTTCGTCTGAT 59.064 45.455 0.00 0.00 0.00 2.90
3225 3781 3.374058 CGCCTGGTTTATTTCGTCTGATT 59.626 43.478 0.00 0.00 0.00 2.57
3226 3782 4.142687 CGCCTGGTTTATTTCGTCTGATTT 60.143 41.667 0.00 0.00 0.00 2.17
3227 3783 5.064198 CGCCTGGTTTATTTCGTCTGATTTA 59.936 40.000 0.00 0.00 0.00 1.40
3228 3784 6.238374 CGCCTGGTTTATTTCGTCTGATTTAT 60.238 38.462 0.00 0.00 0.00 1.40
3229 3785 7.480810 GCCTGGTTTATTTCGTCTGATTTATT 58.519 34.615 0.00 0.00 0.00 1.40
3230 3786 7.973944 GCCTGGTTTATTTCGTCTGATTTATTT 59.026 33.333 0.00 0.00 0.00 1.40
3231 3787 9.855021 CCTGGTTTATTTCGTCTGATTTATTTT 57.145 29.630 0.00 0.00 0.00 1.82
3240 3796 8.475331 TTCGTCTGATTTATTTTAGTCTGTCC 57.525 34.615 0.00 0.00 0.00 4.02
3241 3797 7.837863 TCGTCTGATTTATTTTAGTCTGTCCT 58.162 34.615 0.00 0.00 0.00 3.85
3242 3798 7.974501 TCGTCTGATTTATTTTAGTCTGTCCTC 59.025 37.037 0.00 0.00 0.00 3.71
3243 3799 7.222999 CGTCTGATTTATTTTAGTCTGTCCTCC 59.777 40.741 0.00 0.00 0.00 4.30
3244 3800 7.496263 GTCTGATTTATTTTAGTCTGTCCTCCC 59.504 40.741 0.00 0.00 0.00 4.30
3245 3801 7.182026 TCTGATTTATTTTAGTCTGTCCTCCCA 59.818 37.037 0.00 0.00 0.00 4.37
3246 3802 7.110155 TGATTTATTTTAGTCTGTCCTCCCAC 58.890 38.462 0.00 0.00 0.00 4.61
3247 3803 5.431179 TTATTTTAGTCTGTCCTCCCACC 57.569 43.478 0.00 0.00 0.00 4.61
3248 3804 2.715763 TTTAGTCTGTCCTCCCACCT 57.284 50.000 0.00 0.00 0.00 4.00
3249 3805 2.233305 TTAGTCTGTCCTCCCACCTC 57.767 55.000 0.00 0.00 0.00 3.85
3250 3806 0.335361 TAGTCTGTCCTCCCACCTCC 59.665 60.000 0.00 0.00 0.00 4.30
3251 3807 1.990614 GTCTGTCCTCCCACCTCCC 60.991 68.421 0.00 0.00 0.00 4.30
3252 3808 2.122729 CTGTCCTCCCACCTCCCA 59.877 66.667 0.00 0.00 0.00 4.37
3253 3809 1.992277 CTGTCCTCCCACCTCCCAG 60.992 68.421 0.00 0.00 0.00 4.45
3254 3810 2.122954 GTCCTCCCACCTCCCAGT 59.877 66.667 0.00 0.00 0.00 4.00
3255 3811 1.539124 GTCCTCCCACCTCCCAGTT 60.539 63.158 0.00 0.00 0.00 3.16
3256 3812 1.229529 TCCTCCCACCTCCCAGTTC 60.230 63.158 0.00 0.00 0.00 3.01
3257 3813 2.301738 CCTCCCACCTCCCAGTTCC 61.302 68.421 0.00 0.00 0.00 3.62
3258 3814 2.204090 TCCCACCTCCCAGTTCCC 60.204 66.667 0.00 0.00 0.00 3.97
3259 3815 3.339093 CCCACCTCCCAGTTCCCC 61.339 72.222 0.00 0.00 0.00 4.81
3260 3816 3.339093 CCACCTCCCAGTTCCCCC 61.339 72.222 0.00 0.00 0.00 5.40
3261 3817 3.717294 CACCTCCCAGTTCCCCCG 61.717 72.222 0.00 0.00 0.00 5.73
3264 3820 4.101448 CTCCCAGTTCCCCCGCAG 62.101 72.222 0.00 0.00 0.00 5.18
3277 3833 2.802792 CGCAGGTAATCCCGTCGA 59.197 61.111 0.00 0.00 38.74 4.20
3278 3834 1.588139 CGCAGGTAATCCCGTCGAC 60.588 63.158 5.18 5.18 38.74 4.20
3279 3835 1.227176 GCAGGTAATCCCGTCGACC 60.227 63.158 10.58 0.00 38.74 4.79
3280 3836 1.952102 GCAGGTAATCCCGTCGACCA 61.952 60.000 10.58 0.00 38.74 4.02
3281 3837 0.102481 CAGGTAATCCCGTCGACCAG 59.898 60.000 10.58 1.07 38.74 4.00
3282 3838 0.033796 AGGTAATCCCGTCGACCAGA 60.034 55.000 10.58 7.33 38.74 3.86
3283 3839 0.819582 GGTAATCCCGTCGACCAGAA 59.180 55.000 10.58 0.00 31.89 3.02
3284 3840 1.205417 GGTAATCCCGTCGACCAGAAA 59.795 52.381 10.58 0.00 31.89 2.52
3285 3841 2.354003 GGTAATCCCGTCGACCAGAAAA 60.354 50.000 10.58 0.00 31.89 2.29
3286 3842 2.554370 AATCCCGTCGACCAGAAAAA 57.446 45.000 10.58 0.00 0.00 1.94
3287 3843 1.804601 ATCCCGTCGACCAGAAAAAC 58.195 50.000 10.58 0.00 0.00 2.43
3288 3844 0.249996 TCCCGTCGACCAGAAAAACC 60.250 55.000 10.58 0.00 0.00 3.27
3289 3845 1.232621 CCCGTCGACCAGAAAAACCC 61.233 60.000 10.58 0.00 0.00 4.11
3290 3846 0.533308 CCGTCGACCAGAAAAACCCA 60.533 55.000 10.58 0.00 0.00 4.51
3291 3847 1.301423 CGTCGACCAGAAAAACCCAA 58.699 50.000 10.58 0.00 0.00 4.12
3292 3848 1.003223 CGTCGACCAGAAAAACCCAAC 60.003 52.381 10.58 0.00 0.00 3.77
3293 3849 1.335810 GTCGACCAGAAAAACCCAACC 59.664 52.381 3.51 0.00 0.00 3.77
3294 3850 1.064611 TCGACCAGAAAAACCCAACCA 60.065 47.619 0.00 0.00 0.00 3.67
3295 3851 1.751924 CGACCAGAAAAACCCAACCAA 59.248 47.619 0.00 0.00 0.00 3.67
3296 3852 2.166664 CGACCAGAAAAACCCAACCAAA 59.833 45.455 0.00 0.00 0.00 3.28
3297 3853 3.368531 CGACCAGAAAAACCCAACCAAAA 60.369 43.478 0.00 0.00 0.00 2.44
3298 3854 3.936453 GACCAGAAAAACCCAACCAAAAC 59.064 43.478 0.00 0.00 0.00 2.43
3299 3855 3.275143 CCAGAAAAACCCAACCAAAACC 58.725 45.455 0.00 0.00 0.00 3.27
3300 3856 3.307762 CCAGAAAAACCCAACCAAAACCA 60.308 43.478 0.00 0.00 0.00 3.67
3301 3857 3.687212 CAGAAAAACCCAACCAAAACCAC 59.313 43.478 0.00 0.00 0.00 4.16
3302 3858 2.388310 AAAACCCAACCAAAACCACG 57.612 45.000 0.00 0.00 0.00 4.94
3303 3859 1.268066 AAACCCAACCAAAACCACGT 58.732 45.000 0.00 0.00 0.00 4.49
3304 3860 1.268066 AACCCAACCAAAACCACGTT 58.732 45.000 0.00 0.00 0.00 3.99
3305 3861 2.140839 ACCCAACCAAAACCACGTTA 57.859 45.000 0.00 0.00 0.00 3.18
3306 3862 1.750206 ACCCAACCAAAACCACGTTAC 59.250 47.619 0.00 0.00 0.00 2.50
3307 3863 1.067364 CCCAACCAAAACCACGTTACC 59.933 52.381 0.00 0.00 0.00 2.85
3308 3864 1.749634 CCAACCAAAACCACGTTACCA 59.250 47.619 0.00 0.00 0.00 3.25
3309 3865 2.223618 CCAACCAAAACCACGTTACCAG 60.224 50.000 0.00 0.00 0.00 4.00
3310 3866 1.682740 ACCAAAACCACGTTACCAGG 58.317 50.000 0.00 0.00 0.00 4.45
3311 3867 0.955905 CCAAAACCACGTTACCAGGG 59.044 55.000 0.00 0.00 0.00 4.45
3312 3868 1.477195 CCAAAACCACGTTACCAGGGA 60.477 52.381 0.00 0.00 0.00 4.20
3313 3869 1.877443 CAAAACCACGTTACCAGGGAG 59.123 52.381 0.00 0.00 0.00 4.30
3314 3870 1.134228 AAACCACGTTACCAGGGAGT 58.866 50.000 0.00 0.00 0.00 3.85
3315 3871 0.395312 AACCACGTTACCAGGGAGTG 59.605 55.000 0.00 0.00 0.00 3.51
3316 3872 0.470456 ACCACGTTACCAGGGAGTGA 60.470 55.000 7.25 0.00 35.03 3.41
3317 3873 0.902531 CCACGTTACCAGGGAGTGAT 59.097 55.000 7.25 0.00 35.03 3.06
3318 3874 1.405526 CCACGTTACCAGGGAGTGATG 60.406 57.143 7.25 0.00 35.03 3.07
3319 3875 0.249398 ACGTTACCAGGGAGTGATGC 59.751 55.000 0.00 0.00 0.00 3.91
3320 3876 0.462047 CGTTACCAGGGAGTGATGCC 60.462 60.000 0.00 0.00 0.00 4.40
3321 3877 0.912486 GTTACCAGGGAGTGATGCCT 59.088 55.000 0.00 0.00 0.00 4.75
3322 3878 1.134371 GTTACCAGGGAGTGATGCCTC 60.134 57.143 0.00 0.00 0.00 4.70
3330 3886 1.490574 GAGTGATGCCTCCAGGTAGT 58.509 55.000 0.00 0.00 37.57 2.73
3331 3887 1.410882 GAGTGATGCCTCCAGGTAGTC 59.589 57.143 0.00 0.00 37.57 2.59
3332 3888 0.466124 GTGATGCCTCCAGGTAGTCC 59.534 60.000 0.00 0.00 37.57 3.85
3333 3889 0.691078 TGATGCCTCCAGGTAGTCCC 60.691 60.000 0.00 0.00 37.57 4.46
3334 3890 1.384643 ATGCCTCCAGGTAGTCCCC 60.385 63.158 0.00 0.00 37.57 4.81
3335 3891 1.902818 ATGCCTCCAGGTAGTCCCCT 61.903 60.000 0.00 0.00 37.57 4.79
3336 3892 1.762858 GCCTCCAGGTAGTCCCCTC 60.763 68.421 0.00 0.00 37.57 4.30
3337 3893 1.455959 CCTCCAGGTAGTCCCCTCG 60.456 68.421 0.00 0.00 30.33 4.63
3338 3894 2.043248 TCCAGGTAGTCCCCTCGC 60.043 66.667 0.00 0.00 30.33 5.03
3339 3895 2.363795 CCAGGTAGTCCCCTCGCA 60.364 66.667 0.00 0.00 30.33 5.10
3340 3896 2.722201 CCAGGTAGTCCCCTCGCAC 61.722 68.421 0.00 0.00 30.33 5.34
3341 3897 2.754658 AGGTAGTCCCCTCGCACG 60.755 66.667 0.00 0.00 0.00 5.34
3342 3898 4.509737 GGTAGTCCCCTCGCACGC 62.510 72.222 0.00 0.00 0.00 5.34
3343 3899 4.509737 GTAGTCCCCTCGCACGCC 62.510 72.222 0.00 0.00 0.00 5.68
3347 3903 4.257654 TCCCCTCGCACGCCAAAA 62.258 61.111 0.00 0.00 0.00 2.44
3348 3904 3.291383 CCCCTCGCACGCCAAAAA 61.291 61.111 0.00 0.00 0.00 1.94
3384 3940 6.757026 AAACCAACCAAAAATAAATCGTCG 57.243 33.333 0.00 0.00 0.00 5.12
3385 3941 5.692613 ACCAACCAAAAATAAATCGTCGA 57.307 34.783 0.00 0.00 0.00 4.20
3386 3942 5.695818 ACCAACCAAAAATAAATCGTCGAG 58.304 37.500 0.00 0.00 0.00 4.04
3387 3943 5.092781 CCAACCAAAAATAAATCGTCGAGG 58.907 41.667 0.00 0.00 0.00 4.63
3388 3944 5.106475 CCAACCAAAAATAAATCGTCGAGGA 60.106 40.000 10.66 10.66 0.00 3.71
3389 3945 5.541098 ACCAAAAATAAATCGTCGAGGAC 57.459 39.130 10.45 0.00 0.00 3.85
3390 3946 5.243207 ACCAAAAATAAATCGTCGAGGACT 58.757 37.500 10.45 0.00 0.00 3.85
3391 3947 5.350640 ACCAAAAATAAATCGTCGAGGACTC 59.649 40.000 10.45 0.00 0.00 3.36
3392 3948 5.350365 CCAAAAATAAATCGTCGAGGACTCA 59.650 40.000 10.45 0.00 0.00 3.41
3393 3949 6.241385 CAAAAATAAATCGTCGAGGACTCAC 58.759 40.000 10.45 0.00 0.00 3.51
3394 3950 4.713824 AATAAATCGTCGAGGACTCACA 57.286 40.909 10.45 0.00 0.00 3.58
3395 3951 4.920640 ATAAATCGTCGAGGACTCACAT 57.079 40.909 10.45 0.00 0.00 3.21
3396 3952 2.568696 AATCGTCGAGGACTCACATG 57.431 50.000 10.45 0.00 0.00 3.21
3397 3953 1.751437 ATCGTCGAGGACTCACATGA 58.249 50.000 10.45 0.00 0.00 3.07
3398 3954 1.530323 TCGTCGAGGACTCACATGAA 58.470 50.000 3.17 0.00 0.00 2.57
3399 3955 1.199327 TCGTCGAGGACTCACATGAAC 59.801 52.381 3.17 0.00 0.00 3.18
3400 3956 1.732732 CGTCGAGGACTCACATGAACC 60.733 57.143 0.00 0.00 0.00 3.62
3401 3957 1.272490 GTCGAGGACTCACATGAACCA 59.728 52.381 0.00 0.00 0.00 3.67
3402 3958 1.546029 TCGAGGACTCACATGAACCAG 59.454 52.381 0.00 0.00 0.00 4.00
3403 3959 1.404717 CGAGGACTCACATGAACCAGG 60.405 57.143 0.00 0.00 0.00 4.45
3404 3960 0.987294 AGGACTCACATGAACCAGGG 59.013 55.000 0.00 0.00 0.00 4.45
3405 3961 0.984230 GGACTCACATGAACCAGGGA 59.016 55.000 0.00 0.00 0.00 4.20
3406 3962 1.065854 GGACTCACATGAACCAGGGAG 60.066 57.143 0.00 0.00 0.00 4.30
3407 3963 0.326264 ACTCACATGAACCAGGGAGC 59.674 55.000 0.00 0.00 0.00 4.70
3408 3964 0.742281 CTCACATGAACCAGGGAGCG 60.742 60.000 0.00 0.00 0.00 5.03
3409 3965 1.191489 TCACATGAACCAGGGAGCGA 61.191 55.000 0.00 0.00 0.00 4.93
3410 3966 0.742281 CACATGAACCAGGGAGCGAG 60.742 60.000 0.00 0.00 0.00 5.03
3411 3967 1.153289 CATGAACCAGGGAGCGAGG 60.153 63.158 0.00 0.00 0.00 4.63
3412 3968 3.036429 ATGAACCAGGGAGCGAGGC 62.036 63.158 0.00 0.00 0.00 4.70
3413 3969 4.475135 GAACCAGGGAGCGAGGCC 62.475 72.222 0.00 0.00 0.00 5.19
3421 3977 2.757917 GAGCGAGGCCTCCAGAGT 60.758 66.667 27.20 6.93 0.00 3.24
3422 3978 3.073735 AGCGAGGCCTCCAGAGTG 61.074 66.667 27.20 12.78 0.00 3.51
3423 3979 4.828925 GCGAGGCCTCCAGAGTGC 62.829 72.222 27.20 18.84 0.00 4.40
3424 3980 4.154347 CGAGGCCTCCAGAGTGCC 62.154 72.222 27.20 15.42 41.83 5.01
3425 3981 3.791586 GAGGCCTCCAGAGTGCCC 61.792 72.222 23.19 9.92 42.21 5.36
3426 3982 4.345286 AGGCCTCCAGAGTGCCCT 62.345 66.667 18.09 7.82 42.21 5.19
3427 3983 3.791586 GGCCTCCAGAGTGCCCTC 61.792 72.222 13.29 0.00 38.21 4.30
3428 3984 3.005539 GCCTCCAGAGTGCCCTCA 61.006 66.667 0.00 0.00 40.40 3.86
3429 3985 2.596851 GCCTCCAGAGTGCCCTCAA 61.597 63.158 0.00 0.00 40.40 3.02
3430 3986 1.919600 GCCTCCAGAGTGCCCTCAAT 61.920 60.000 0.00 0.00 40.40 2.57
3431 3987 0.622665 CCTCCAGAGTGCCCTCAATT 59.377 55.000 0.00 0.00 40.40 2.32
3432 3988 1.681166 CCTCCAGAGTGCCCTCAATTG 60.681 57.143 0.00 0.00 40.40 2.32
3433 3989 0.329261 TCCAGAGTGCCCTCAATTGG 59.671 55.000 5.42 0.00 40.40 3.16
3439 3995 2.439156 GCCCTCAATTGGCTCGCT 60.439 61.111 5.42 0.00 45.70 4.93
3440 3996 1.153168 GCCCTCAATTGGCTCGCTA 60.153 57.895 5.42 0.00 45.70 4.26
3441 3997 1.162800 GCCCTCAATTGGCTCGCTAG 61.163 60.000 5.42 0.00 45.70 3.42
3451 4007 3.188011 CTCGCTAGCAGGACGACA 58.812 61.111 16.45 0.00 0.00 4.35
3452 4008 1.506718 CTCGCTAGCAGGACGACAA 59.493 57.895 16.45 0.00 0.00 3.18
3453 4009 0.798771 CTCGCTAGCAGGACGACAAC 60.799 60.000 16.45 0.00 0.00 3.32
3454 4010 1.080772 CGCTAGCAGGACGACAACA 60.081 57.895 16.45 0.00 0.00 3.33
3455 4011 0.666274 CGCTAGCAGGACGACAACAA 60.666 55.000 16.45 0.00 0.00 2.83
3456 4012 0.790814 GCTAGCAGGACGACAACAAC 59.209 55.000 10.63 0.00 0.00 3.32
3457 4013 1.060713 CTAGCAGGACGACAACAACG 58.939 55.000 0.00 0.00 0.00 4.10
3458 4014 0.942410 TAGCAGGACGACAACAACGC 60.942 55.000 0.00 0.00 0.00 4.84
3459 4015 2.935955 CAGGACGACAACAACGCC 59.064 61.111 0.00 0.00 0.00 5.68
3460 4016 2.280592 AGGACGACAACAACGCCC 60.281 61.111 0.00 0.00 33.73 6.13
3461 4017 3.351416 GGACGACAACAACGCCCC 61.351 66.667 0.00 0.00 0.00 5.80
3462 4018 2.589442 GACGACAACAACGCCCCA 60.589 61.111 0.00 0.00 0.00 4.96
3463 4019 2.590575 ACGACAACAACGCCCCAG 60.591 61.111 0.00 0.00 0.00 4.45
3464 4020 3.353836 CGACAACAACGCCCCAGG 61.354 66.667 0.00 0.00 0.00 4.45
3465 4021 3.670377 GACAACAACGCCCCAGGC 61.670 66.667 0.00 0.00 46.75 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
169 170 2.731374 CCTTCTCCGCCGAGATCC 59.269 66.667 5.57 0.00 44.68 3.36
361 362 4.454717 GTGGGTTTTAGCGCGCGG 62.455 66.667 33.06 13.66 0.00 6.46
363 364 0.318360 AAAAGTGGGTTTTAGCGCGC 60.318 50.000 26.66 26.66 36.54 6.86
364 365 2.577450 GTAAAAGTGGGTTTTAGCGCG 58.423 47.619 0.00 0.00 40.55 6.86
397 398 2.356382 CTCAAACAGTGGCCGTACAAAA 59.644 45.455 0.00 0.00 0.00 2.44
401 402 1.732259 CATCTCAAACAGTGGCCGTAC 59.268 52.381 0.00 0.00 0.00 3.67
405 406 0.807496 GAGCATCTCAAACAGTGGCC 59.193 55.000 0.00 0.00 0.00 5.36
415 416 3.480046 CGCCCACGTAAGAGCATCTCA 62.480 57.143 0.00 0.00 38.72 3.27
503 504 1.269569 CCAGCAAACGAACCCCTTTTC 60.270 52.381 0.00 0.00 0.00 2.29
505 506 0.396556 ACCAGCAAACGAACCCCTTT 60.397 50.000 0.00 0.00 0.00 3.11
506 507 0.396556 AACCAGCAAACGAACCCCTT 60.397 50.000 0.00 0.00 0.00 3.95
507 508 1.106944 CAACCAGCAAACGAACCCCT 61.107 55.000 0.00 0.00 0.00 4.79
509 510 1.362355 CCAACCAGCAAACGAACCC 59.638 57.895 0.00 0.00 0.00 4.11
510 511 0.458260 AACCAACCAGCAAACGAACC 59.542 50.000 0.00 0.00 0.00 3.62
511 512 1.555477 CAACCAACCAGCAAACGAAC 58.445 50.000 0.00 0.00 0.00 3.95
512 513 0.457851 CCAACCAACCAGCAAACGAA 59.542 50.000 0.00 0.00 0.00 3.85
513 514 0.394488 TCCAACCAACCAGCAAACGA 60.394 50.000 0.00 0.00 0.00 3.85
514 515 0.457851 TTCCAACCAACCAGCAAACG 59.542 50.000 0.00 0.00 0.00 3.60
515 516 1.801025 CGTTCCAACCAACCAGCAAAC 60.801 52.381 0.00 0.00 0.00 2.93
519 520 0.741915 TTTCGTTCCAACCAACCAGC 59.258 50.000 0.00 0.00 0.00 4.85
573 574 2.673833 GGACTGAAACTGTAGGTCGTG 58.326 52.381 0.00 0.00 0.00 4.35
579 580 2.325761 CGTTCCGGACTGAAACTGTAG 58.674 52.381 1.83 0.00 0.00 2.74
593 594 0.098728 GATTGCACCAATCCGTTCCG 59.901 55.000 6.67 0.00 42.90 4.30
594 595 1.135402 GTGATTGCACCAATCCGTTCC 60.135 52.381 13.58 0.00 46.65 3.62
595 596 2.262572 GTGATTGCACCAATCCGTTC 57.737 50.000 13.58 1.54 46.65 3.95
605 606 5.615289 AGGAGTATGATTAGGTGATTGCAC 58.385 41.667 0.00 0.00 44.39 4.57
606 607 5.894298 AGGAGTATGATTAGGTGATTGCA 57.106 39.130 0.00 0.00 0.00 4.08
607 608 8.677148 TTAAAGGAGTATGATTAGGTGATTGC 57.323 34.615 0.00 0.00 0.00 3.56
669 856 1.071567 GCGGAACAGTAGACACGAGC 61.072 60.000 0.00 0.00 0.00 5.03
748 935 1.694150 TGTTGTAGAGTGCTGGCTTCT 59.306 47.619 0.00 0.54 0.00 2.85
779 967 4.143597 CGTTCCGATCGATTAATTTCCGAG 60.144 45.833 18.66 0.00 35.70 4.63
811 999 2.092882 GTTCTTTCCGCCGAGACCG 61.093 63.158 0.00 0.00 0.00 4.79
871 1059 1.419374 ACAAGTGACGAACGATGAGC 58.581 50.000 0.14 0.00 0.00 4.26
945 1136 9.747293 ACTATGATATGATGATGACGATGATTC 57.253 33.333 0.00 0.00 0.00 2.52
958 1149 7.013529 CACATGCGTGAAACTATGATATGATG 58.986 38.462 14.17 0.00 46.80 3.07
991 1189 3.157217 GACCGCTCATCCTCCGCAT 62.157 63.158 0.00 0.00 0.00 4.73
1208 1409 2.359967 GCCCGGCTGACTAGGAAGT 61.360 63.158 0.71 0.00 39.21 3.01
1209 1410 2.501610 GCCCGGCTGACTAGGAAG 59.498 66.667 0.71 0.00 0.00 3.46
1215 1416 2.284699 AAGTAGGCCCGGCTGACT 60.285 61.111 9.86 9.98 0.00 3.41
1216 1417 2.180159 TTGAAGTAGGCCCGGCTGAC 62.180 60.000 9.86 7.71 0.00 3.51
1311 1512 1.337384 ACATGATCCACGCCCTGCTA 61.337 55.000 0.00 0.00 0.00 3.49
1698 1924 2.203728 ACGTGGTGGGAGTGGCTA 60.204 61.111 0.00 0.00 0.00 3.93
1709 1935 4.865629 TGAGGATCCTCACGTGGT 57.134 55.556 35.92 2.55 46.80 4.16
1866 2095 1.207390 GCGCAAATCACAAGCAAACA 58.793 45.000 0.30 0.00 0.00 2.83
2107 2341 2.933287 ACGAGGATGGGGTTGCCA 60.933 61.111 0.00 0.00 0.00 4.92
2109 2343 2.511600 CGACGAGGATGGGGTTGC 60.512 66.667 0.00 0.00 0.00 4.17
2164 2404 3.879295 CGTAGGGAAGGAGACGTACATTA 59.121 47.826 0.00 0.00 0.00 1.90
2186 2426 0.865111 TCACGTGTAGTTGCATGCAC 59.135 50.000 22.58 15.59 33.04 4.57
2226 2491 1.067985 CAGGCACACACAACAACACAA 60.068 47.619 0.00 0.00 0.00 3.33
2437 2702 1.906824 GGTGTGACCTCTCCGGACA 60.907 63.158 0.00 0.00 34.73 4.02
2512 3043 3.635373 GTGATCCACCAAGCAATGATCAT 59.365 43.478 1.18 1.18 0.00 2.45
2596 3128 9.567776 TTCATTCTGGTTTAACTATGTCTCAAA 57.432 29.630 0.00 0.00 0.00 2.69
2666 3198 9.352784 TCGCCATCTCAAAATACAAATAAAAAG 57.647 29.630 0.00 0.00 0.00 2.27
2678 3210 4.542662 CGAAGATTCGCCATCTCAAAAT 57.457 40.909 1.55 0.00 41.93 1.82
2744 3276 3.041946 AGCTAGATGGAATTCCGGACTT 58.958 45.455 19.57 4.72 39.43 3.01
2763 3295 3.127533 CACGCCTGCAGGGTAAGC 61.128 66.667 33.46 17.65 40.21 3.09
2798 3330 6.267471 TGAGGCCACTTGATCTAAAAATTTGT 59.733 34.615 5.01 0.00 0.00 2.83
2846 3395 6.543831 AGTTAAAGCTTTTCTGCTCTTGAGAA 59.456 34.615 18.47 0.00 43.24 2.87
2888 3442 6.575254 CGGCAAAGATTATATAGGCCTCTCTT 60.575 42.308 9.68 6.66 37.79 2.85
2954 3510 9.745018 ACAGATATGCATGTTATAGGCTAAAAT 57.255 29.630 10.16 0.00 36.92 1.82
3138 3694 3.702045 CCAACTCACCCTTAGGAGTAGAG 59.298 52.174 0.00 8.34 43.26 2.43
3139 3695 3.077088 ACCAACTCACCCTTAGGAGTAGA 59.923 47.826 0.00 0.00 43.26 2.59
3140 3696 3.442076 ACCAACTCACCCTTAGGAGTAG 58.558 50.000 0.00 0.00 43.26 2.57
3141 3697 3.555117 ACCAACTCACCCTTAGGAGTA 57.445 47.619 0.00 0.00 43.26 2.59
3142 3698 2.417719 ACCAACTCACCCTTAGGAGT 57.582 50.000 0.00 0.00 45.85 3.85
3143 3699 3.442076 ACTACCAACTCACCCTTAGGAG 58.558 50.000 0.00 0.00 36.73 3.69
3144 3700 3.077088 AGACTACCAACTCACCCTTAGGA 59.923 47.826 0.00 0.00 36.73 2.94
3145 3701 3.442076 AGACTACCAACTCACCCTTAGG 58.558 50.000 0.00 0.00 40.04 2.69
3146 3702 3.447944 GGAGACTACCAACTCACCCTTAG 59.552 52.174 0.00 0.00 35.17 2.18
3147 3703 3.438183 GGAGACTACCAACTCACCCTTA 58.562 50.000 0.00 0.00 35.17 2.69
3148 3704 2.258109 GGAGACTACCAACTCACCCTT 58.742 52.381 0.00 0.00 35.17 3.95
3149 3705 1.891450 CGGAGACTACCAACTCACCCT 60.891 57.143 0.00 0.00 35.17 4.34
3150 3706 0.531200 CGGAGACTACCAACTCACCC 59.469 60.000 0.00 0.00 35.17 4.61
3151 3707 1.254954 ACGGAGACTACCAACTCACC 58.745 55.000 0.00 0.00 35.17 4.02
3152 3708 2.352519 GGAACGGAGACTACCAACTCAC 60.353 54.545 0.00 0.00 35.17 3.51
3153 3709 1.891150 GGAACGGAGACTACCAACTCA 59.109 52.381 0.00 0.00 35.17 3.41
3154 3710 1.891150 TGGAACGGAGACTACCAACTC 59.109 52.381 0.00 0.00 0.00 3.01
3155 3711 2.005370 TGGAACGGAGACTACCAACT 57.995 50.000 0.00 0.00 0.00 3.16
3156 3712 2.232941 TCATGGAACGGAGACTACCAAC 59.767 50.000 0.00 0.00 34.28 3.77
3157 3713 2.531771 TCATGGAACGGAGACTACCAA 58.468 47.619 0.00 0.00 34.28 3.67
3158 3714 2.225382 TCATGGAACGGAGACTACCA 57.775 50.000 0.00 0.00 35.09 3.25
3159 3715 3.821421 AATCATGGAACGGAGACTACC 57.179 47.619 0.00 0.00 0.00 3.18
3180 3736 0.179012 GTGGGAGGTGGGACGAAAAA 60.179 55.000 0.00 0.00 0.00 1.94
3181 3737 1.452801 GTGGGAGGTGGGACGAAAA 59.547 57.895 0.00 0.00 0.00 2.29
3182 3738 2.522367 GGTGGGAGGTGGGACGAAA 61.522 63.158 0.00 0.00 0.00 3.46
3183 3739 2.926242 GGTGGGAGGTGGGACGAA 60.926 66.667 0.00 0.00 0.00 3.85
3184 3740 3.477956 AAGGTGGGAGGTGGGACGA 62.478 63.158 0.00 0.00 0.00 4.20
3185 3741 2.928396 AAGGTGGGAGGTGGGACG 60.928 66.667 0.00 0.00 0.00 4.79
3186 3742 2.955881 CGAAGGTGGGAGGTGGGAC 61.956 68.421 0.00 0.00 0.00 4.46
3187 3743 2.606519 CGAAGGTGGGAGGTGGGA 60.607 66.667 0.00 0.00 0.00 4.37
3188 3744 4.410400 GCGAAGGTGGGAGGTGGG 62.410 72.222 0.00 0.00 0.00 4.61
3189 3745 4.410400 GGCGAAGGTGGGAGGTGG 62.410 72.222 0.00 0.00 0.00 4.61
3190 3746 3.322466 AGGCGAAGGTGGGAGGTG 61.322 66.667 0.00 0.00 0.00 4.00
3191 3747 3.322466 CAGGCGAAGGTGGGAGGT 61.322 66.667 0.00 0.00 0.00 3.85
3192 3748 4.101448 CCAGGCGAAGGTGGGAGG 62.101 72.222 0.00 0.00 0.00 4.30
3193 3749 2.411765 AAACCAGGCGAAGGTGGGAG 62.412 60.000 0.19 0.00 39.86 4.30
3194 3750 1.128809 TAAACCAGGCGAAGGTGGGA 61.129 55.000 0.19 0.00 39.86 4.37
3195 3751 0.034477 ATAAACCAGGCGAAGGTGGG 60.034 55.000 0.19 0.00 39.86 4.61
3196 3752 1.834188 AATAAACCAGGCGAAGGTGG 58.166 50.000 0.19 0.00 39.86 4.61
3197 3753 2.159572 CGAAATAAACCAGGCGAAGGTG 60.160 50.000 0.19 0.00 39.86 4.00
3198 3754 2.081462 CGAAATAAACCAGGCGAAGGT 58.919 47.619 0.00 0.00 42.34 3.50
3199 3755 2.081462 ACGAAATAAACCAGGCGAAGG 58.919 47.619 0.00 0.00 0.00 3.46
3200 3756 3.000727 AGACGAAATAAACCAGGCGAAG 58.999 45.455 0.00 0.00 0.00 3.79
3201 3757 2.739913 CAGACGAAATAAACCAGGCGAA 59.260 45.455 0.00 0.00 0.00 4.70
3202 3758 2.028839 TCAGACGAAATAAACCAGGCGA 60.029 45.455 0.00 0.00 0.00 5.54
3203 3759 2.343101 TCAGACGAAATAAACCAGGCG 58.657 47.619 0.00 0.00 0.00 5.52
3204 3760 4.965119 AATCAGACGAAATAAACCAGGC 57.035 40.909 0.00 0.00 0.00 4.85
3205 3761 9.855021 AAAATAAATCAGACGAAATAAACCAGG 57.145 29.630 0.00 0.00 0.00 4.45
3214 3770 8.932791 GGACAGACTAAAATAAATCAGACGAAA 58.067 33.333 0.00 0.00 0.00 3.46
3215 3771 8.311836 AGGACAGACTAAAATAAATCAGACGAA 58.688 33.333 0.00 0.00 0.00 3.85
3216 3772 7.837863 AGGACAGACTAAAATAAATCAGACGA 58.162 34.615 0.00 0.00 0.00 4.20
3217 3773 7.222999 GGAGGACAGACTAAAATAAATCAGACG 59.777 40.741 0.00 0.00 0.00 4.18
3218 3774 7.496263 GGGAGGACAGACTAAAATAAATCAGAC 59.504 40.741 0.00 0.00 0.00 3.51
3219 3775 7.182026 TGGGAGGACAGACTAAAATAAATCAGA 59.818 37.037 0.00 0.00 0.00 3.27
3220 3776 7.281100 GTGGGAGGACAGACTAAAATAAATCAG 59.719 40.741 0.00 0.00 0.00 2.90
3221 3777 7.110155 GTGGGAGGACAGACTAAAATAAATCA 58.890 38.462 0.00 0.00 0.00 2.57
3222 3778 6.542735 GGTGGGAGGACAGACTAAAATAAATC 59.457 42.308 0.00 0.00 0.00 2.17
3223 3779 6.217693 AGGTGGGAGGACAGACTAAAATAAAT 59.782 38.462 0.00 0.00 0.00 1.40
3224 3780 5.550403 AGGTGGGAGGACAGACTAAAATAAA 59.450 40.000 0.00 0.00 0.00 1.40
3225 3781 5.098663 AGGTGGGAGGACAGACTAAAATAA 58.901 41.667 0.00 0.00 0.00 1.40
3226 3782 4.695606 AGGTGGGAGGACAGACTAAAATA 58.304 43.478 0.00 0.00 0.00 1.40
3227 3783 3.519913 GAGGTGGGAGGACAGACTAAAAT 59.480 47.826 0.00 0.00 0.00 1.82
3228 3784 2.904434 GAGGTGGGAGGACAGACTAAAA 59.096 50.000 0.00 0.00 0.00 1.52
3229 3785 2.537143 GAGGTGGGAGGACAGACTAAA 58.463 52.381 0.00 0.00 0.00 1.85
3230 3786 1.273098 GGAGGTGGGAGGACAGACTAA 60.273 57.143 0.00 0.00 0.00 2.24
3231 3787 0.335361 GGAGGTGGGAGGACAGACTA 59.665 60.000 0.00 0.00 0.00 2.59
3232 3788 1.079438 GGAGGTGGGAGGACAGACT 59.921 63.158 0.00 0.00 0.00 3.24
3233 3789 1.990614 GGGAGGTGGGAGGACAGAC 60.991 68.421 0.00 0.00 0.00 3.51
3234 3790 2.450243 GGGAGGTGGGAGGACAGA 59.550 66.667 0.00 0.00 0.00 3.41
3235 3791 1.992277 CTGGGAGGTGGGAGGACAG 60.992 68.421 0.00 0.00 0.00 3.51
3236 3792 2.122729 CTGGGAGGTGGGAGGACA 59.877 66.667 0.00 0.00 0.00 4.02
3237 3793 1.539124 AACTGGGAGGTGGGAGGAC 60.539 63.158 0.00 0.00 0.00 3.85
3238 3794 1.229529 GAACTGGGAGGTGGGAGGA 60.230 63.158 0.00 0.00 0.00 3.71
3239 3795 2.301738 GGAACTGGGAGGTGGGAGG 61.302 68.421 0.00 0.00 0.00 4.30
3240 3796 2.301738 GGGAACTGGGAGGTGGGAG 61.302 68.421 0.00 0.00 0.00 4.30
3241 3797 2.204090 GGGAACTGGGAGGTGGGA 60.204 66.667 0.00 0.00 0.00 4.37
3242 3798 3.339093 GGGGAACTGGGAGGTGGG 61.339 72.222 0.00 0.00 0.00 4.61
3243 3799 3.339093 GGGGGAACTGGGAGGTGG 61.339 72.222 0.00 0.00 0.00 4.61
3244 3800 3.717294 CGGGGGAACTGGGAGGTG 61.717 72.222 0.00 0.00 0.00 4.00
3247 3803 4.101448 CTGCGGGGGAACTGGGAG 62.101 72.222 0.00 0.00 0.00 4.30
3250 3806 1.921869 ATTACCTGCGGGGGAACTGG 61.922 60.000 18.00 0.00 41.43 4.00
3251 3807 0.463833 GATTACCTGCGGGGGAACTG 60.464 60.000 18.00 0.00 41.43 3.16
3252 3808 1.632965 GGATTACCTGCGGGGGAACT 61.633 60.000 18.00 0.00 41.43 3.01
3253 3809 1.153025 GGATTACCTGCGGGGGAAC 60.153 63.158 18.00 4.55 41.43 3.62
3254 3810 2.380285 GGGATTACCTGCGGGGGAA 61.380 63.158 18.00 10.19 43.07 3.97
3255 3811 2.770904 GGGATTACCTGCGGGGGA 60.771 66.667 18.00 3.77 40.03 4.81
3256 3812 4.250305 CGGGATTACCTGCGGGGG 62.250 72.222 18.00 2.20 40.03 5.40
3257 3813 3.456105 GACGGGATTACCTGCGGGG 62.456 68.421 18.00 5.11 45.88 5.73
3258 3814 2.108362 GACGGGATTACCTGCGGG 59.892 66.667 11.02 11.02 45.88 6.13
3259 3815 2.279252 CGACGGGATTACCTGCGG 60.279 66.667 0.00 0.00 45.88 5.69
3260 3816 1.588139 GTCGACGGGATTACCTGCG 60.588 63.158 0.00 0.00 45.88 5.18
3261 3817 1.227176 GGTCGACGGGATTACCTGC 60.227 63.158 9.92 0.00 45.88 4.85
3263 3819 0.033796 TCTGGTCGACGGGATTACCT 60.034 55.000 9.92 0.00 36.97 3.08
3264 3820 0.819582 TTCTGGTCGACGGGATTACC 59.180 55.000 9.92 0.00 0.00 2.85
3265 3821 2.660189 TTTCTGGTCGACGGGATTAC 57.340 50.000 9.92 0.00 0.00 1.89
3266 3822 3.328505 GTTTTTCTGGTCGACGGGATTA 58.671 45.455 9.92 0.00 0.00 1.75
3267 3823 2.148768 GTTTTTCTGGTCGACGGGATT 58.851 47.619 9.92 0.00 0.00 3.01
3268 3824 1.609841 GGTTTTTCTGGTCGACGGGAT 60.610 52.381 9.92 0.00 0.00 3.85
3269 3825 0.249996 GGTTTTTCTGGTCGACGGGA 60.250 55.000 9.92 7.23 0.00 5.14
3270 3826 1.232621 GGGTTTTTCTGGTCGACGGG 61.233 60.000 9.92 4.75 0.00 5.28
3271 3827 0.533308 TGGGTTTTTCTGGTCGACGG 60.533 55.000 9.92 5.13 0.00 4.79
3272 3828 1.003223 GTTGGGTTTTTCTGGTCGACG 60.003 52.381 9.92 0.00 0.00 5.12
3273 3829 1.335810 GGTTGGGTTTTTCTGGTCGAC 59.664 52.381 7.13 7.13 0.00 4.20
3274 3830 1.064611 TGGTTGGGTTTTTCTGGTCGA 60.065 47.619 0.00 0.00 0.00 4.20
3275 3831 1.394618 TGGTTGGGTTTTTCTGGTCG 58.605 50.000 0.00 0.00 0.00 4.79
3276 3832 3.897141 TTTGGTTGGGTTTTTCTGGTC 57.103 42.857 0.00 0.00 0.00 4.02
3277 3833 3.307833 GGTTTTGGTTGGGTTTTTCTGGT 60.308 43.478 0.00 0.00 0.00 4.00
3278 3834 3.275143 GGTTTTGGTTGGGTTTTTCTGG 58.725 45.455 0.00 0.00 0.00 3.86
3279 3835 3.687212 GTGGTTTTGGTTGGGTTTTTCTG 59.313 43.478 0.00 0.00 0.00 3.02
3280 3836 3.617775 CGTGGTTTTGGTTGGGTTTTTCT 60.618 43.478 0.00 0.00 0.00 2.52
3281 3837 2.673862 CGTGGTTTTGGTTGGGTTTTTC 59.326 45.455 0.00 0.00 0.00 2.29
3282 3838 2.038689 ACGTGGTTTTGGTTGGGTTTTT 59.961 40.909 0.00 0.00 0.00 1.94
3283 3839 1.624312 ACGTGGTTTTGGTTGGGTTTT 59.376 42.857 0.00 0.00 0.00 2.43
3284 3840 1.268066 ACGTGGTTTTGGTTGGGTTT 58.732 45.000 0.00 0.00 0.00 3.27
3285 3841 1.268066 AACGTGGTTTTGGTTGGGTT 58.732 45.000 0.00 0.00 0.00 4.11
3286 3842 1.750206 GTAACGTGGTTTTGGTTGGGT 59.250 47.619 0.00 0.00 0.00 4.51
3287 3843 1.067364 GGTAACGTGGTTTTGGTTGGG 59.933 52.381 0.00 0.00 0.00 4.12
3288 3844 1.749634 TGGTAACGTGGTTTTGGTTGG 59.250 47.619 0.00 0.00 42.51 3.77
3289 3845 2.223618 CCTGGTAACGTGGTTTTGGTTG 60.224 50.000 0.00 0.00 42.51 3.77
3290 3846 2.025898 CCTGGTAACGTGGTTTTGGTT 58.974 47.619 0.00 0.00 42.51 3.67
3291 3847 1.682740 CCTGGTAACGTGGTTTTGGT 58.317 50.000 0.00 0.00 42.51 3.67
3292 3848 0.955905 CCCTGGTAACGTGGTTTTGG 59.044 55.000 0.00 0.00 42.51 3.28
3293 3849 1.877443 CTCCCTGGTAACGTGGTTTTG 59.123 52.381 0.00 0.00 42.51 2.44
3294 3850 1.491754 ACTCCCTGGTAACGTGGTTTT 59.508 47.619 0.00 0.00 42.51 2.43
3295 3851 1.134228 ACTCCCTGGTAACGTGGTTT 58.866 50.000 0.00 0.00 42.51 3.27
3296 3852 0.395312 CACTCCCTGGTAACGTGGTT 59.605 55.000 0.00 0.00 42.51 3.67
3297 3853 0.470456 TCACTCCCTGGTAACGTGGT 60.470 55.000 0.00 0.00 42.51 4.16
3298 3854 0.902531 ATCACTCCCTGGTAACGTGG 59.097 55.000 0.00 0.00 42.51 4.94
3299 3855 2.007049 GCATCACTCCCTGGTAACGTG 61.007 57.143 0.00 0.00 42.51 4.49
3300 3856 0.249398 GCATCACTCCCTGGTAACGT 59.751 55.000 0.00 0.00 42.51 3.99
3301 3857 0.462047 GGCATCACTCCCTGGTAACG 60.462 60.000 0.00 0.00 42.51 3.18
3302 3858 0.912486 AGGCATCACTCCCTGGTAAC 59.088 55.000 0.00 0.00 0.00 2.50
3303 3859 1.204146 GAGGCATCACTCCCTGGTAA 58.796 55.000 0.00 0.00 0.00 2.85
3304 3860 2.916355 GAGGCATCACTCCCTGGTA 58.084 57.895 0.00 0.00 0.00 3.25
3305 3861 3.732938 GAGGCATCACTCCCTGGT 58.267 61.111 0.00 0.00 0.00 4.00
3311 3867 1.410882 GACTACCTGGAGGCATCACTC 59.589 57.143 0.00 0.00 39.32 3.51
3312 3868 1.490574 GACTACCTGGAGGCATCACT 58.509 55.000 0.00 0.00 39.32 3.41
3313 3869 0.466124 GGACTACCTGGAGGCATCAC 59.534 60.000 0.00 0.00 39.32 3.06
3314 3870 0.691078 GGGACTACCTGGAGGCATCA 60.691 60.000 0.00 0.00 39.32 3.07
3315 3871 1.411651 GGGGACTACCTGGAGGCATC 61.412 65.000 0.00 0.00 40.03 3.91
3316 3872 1.384643 GGGGACTACCTGGAGGCAT 60.385 63.158 0.00 0.00 40.03 4.40
3317 3873 2.040606 GGGGACTACCTGGAGGCA 59.959 66.667 0.00 0.00 40.03 4.75
3318 3874 1.762858 GAGGGGACTACCTGGAGGC 60.763 68.421 0.00 0.00 44.43 4.70
3319 3875 1.455959 CGAGGGGACTACCTGGAGG 60.456 68.421 0.00 0.00 44.43 4.30
3320 3876 2.128507 GCGAGGGGACTACCTGGAG 61.129 68.421 0.00 0.00 44.43 3.86
3321 3877 2.043248 GCGAGGGGACTACCTGGA 60.043 66.667 0.00 0.00 44.43 3.86
3322 3878 2.363795 TGCGAGGGGACTACCTGG 60.364 66.667 0.00 0.00 44.43 4.45
3323 3879 2.893398 GTGCGAGGGGACTACCTG 59.107 66.667 0.00 0.00 44.43 4.00
3324 3880 2.754658 CGTGCGAGGGGACTACCT 60.755 66.667 0.00 0.00 44.43 3.08
3325 3881 4.509737 GCGTGCGAGGGGACTACC 62.510 72.222 0.00 0.00 44.43 3.18
3326 3882 4.509737 GGCGTGCGAGGGGACTAC 62.510 72.222 0.00 0.00 44.43 2.73
3330 3886 3.776347 TTTTTGGCGTGCGAGGGGA 62.776 57.895 0.00 0.00 0.00 4.81
3331 3887 3.291383 TTTTTGGCGTGCGAGGGG 61.291 61.111 0.00 0.00 0.00 4.79
3359 3915 7.491696 TCGACGATTTATTTTTGGTTGGTTTTT 59.508 29.630 0.00 0.00 0.00 1.94
3360 3916 6.979238 TCGACGATTTATTTTTGGTTGGTTTT 59.021 30.769 0.00 0.00 0.00 2.43
3361 3917 6.505272 TCGACGATTTATTTTTGGTTGGTTT 58.495 32.000 0.00 0.00 0.00 3.27
3362 3918 6.074544 TCGACGATTTATTTTTGGTTGGTT 57.925 33.333 0.00 0.00 0.00 3.67
3363 3919 5.335348 CCTCGACGATTTATTTTTGGTTGGT 60.335 40.000 0.00 0.00 0.00 3.67
3364 3920 5.092781 CCTCGACGATTTATTTTTGGTTGG 58.907 41.667 0.00 0.00 0.00 3.77
3365 3921 5.793457 GTCCTCGACGATTTATTTTTGGTTG 59.207 40.000 0.00 0.00 0.00 3.77
3366 3922 5.704053 AGTCCTCGACGATTTATTTTTGGTT 59.296 36.000 0.00 0.00 37.67 3.67
3367 3923 5.243207 AGTCCTCGACGATTTATTTTTGGT 58.757 37.500 0.00 0.00 37.67 3.67
3368 3924 5.350365 TGAGTCCTCGACGATTTATTTTTGG 59.650 40.000 0.00 0.00 37.67 3.28
3369 3925 6.128661 TGTGAGTCCTCGACGATTTATTTTTG 60.129 38.462 0.00 0.00 37.67 2.44
3370 3926 5.929992 TGTGAGTCCTCGACGATTTATTTTT 59.070 36.000 0.00 0.00 37.67 1.94
3371 3927 5.475719 TGTGAGTCCTCGACGATTTATTTT 58.524 37.500 0.00 0.00 37.67 1.82
3372 3928 5.068234 TGTGAGTCCTCGACGATTTATTT 57.932 39.130 0.00 0.00 37.67 1.40
3373 3929 4.713824 TGTGAGTCCTCGACGATTTATT 57.286 40.909 0.00 0.00 37.67 1.40
3374 3930 4.338400 TCATGTGAGTCCTCGACGATTTAT 59.662 41.667 0.00 0.00 37.67 1.40
3375 3931 3.692593 TCATGTGAGTCCTCGACGATTTA 59.307 43.478 0.00 0.00 37.67 1.40
3376 3932 2.492088 TCATGTGAGTCCTCGACGATTT 59.508 45.455 0.00 0.00 37.67 2.17
3377 3933 2.092323 TCATGTGAGTCCTCGACGATT 58.908 47.619 0.00 0.00 37.67 3.34
3378 3934 1.751437 TCATGTGAGTCCTCGACGAT 58.249 50.000 0.00 0.00 37.67 3.73
3379 3935 1.199327 GTTCATGTGAGTCCTCGACGA 59.801 52.381 0.00 0.00 37.67 4.20
3380 3936 1.618861 GTTCATGTGAGTCCTCGACG 58.381 55.000 0.00 0.00 37.67 5.12
3381 3937 1.272490 TGGTTCATGTGAGTCCTCGAC 59.728 52.381 0.00 0.00 0.00 4.20
3382 3938 1.546029 CTGGTTCATGTGAGTCCTCGA 59.454 52.381 0.00 0.00 0.00 4.04
3383 3939 1.404717 CCTGGTTCATGTGAGTCCTCG 60.405 57.143 0.00 0.00 0.00 4.63
3384 3940 1.065854 CCCTGGTTCATGTGAGTCCTC 60.066 57.143 0.00 0.00 0.00 3.71
3385 3941 0.987294 CCCTGGTTCATGTGAGTCCT 59.013 55.000 0.00 0.00 0.00 3.85
3386 3942 0.984230 TCCCTGGTTCATGTGAGTCC 59.016 55.000 0.00 1.23 0.00 3.85
3387 3943 1.677217 GCTCCCTGGTTCATGTGAGTC 60.677 57.143 0.00 0.00 0.00 3.36
3388 3944 0.326264 GCTCCCTGGTTCATGTGAGT 59.674 55.000 0.00 0.00 0.00 3.41
3389 3945 0.742281 CGCTCCCTGGTTCATGTGAG 60.742 60.000 0.00 0.00 0.00 3.51
3390 3946 1.191489 TCGCTCCCTGGTTCATGTGA 61.191 55.000 0.00 0.00 0.00 3.58
3391 3947 0.742281 CTCGCTCCCTGGTTCATGTG 60.742 60.000 0.00 0.00 0.00 3.21
3392 3948 1.599047 CTCGCTCCCTGGTTCATGT 59.401 57.895 0.00 0.00 0.00 3.21
3393 3949 1.153289 CCTCGCTCCCTGGTTCATG 60.153 63.158 0.00 0.00 0.00 3.07
3394 3950 3.036429 GCCTCGCTCCCTGGTTCAT 62.036 63.158 0.00 0.00 0.00 2.57
3395 3951 3.706373 GCCTCGCTCCCTGGTTCA 61.706 66.667 0.00 0.00 0.00 3.18
3396 3952 4.475135 GGCCTCGCTCCCTGGTTC 62.475 72.222 0.00 0.00 0.00 3.62
3403 3959 3.535962 CTCTGGAGGCCTCGCTCC 61.536 72.222 26.36 14.27 40.05 4.70
3404 3960 2.757917 ACTCTGGAGGCCTCGCTC 60.758 66.667 26.36 13.41 0.00 5.03
3405 3961 3.073735 CACTCTGGAGGCCTCGCT 61.074 66.667 26.36 3.61 0.00 4.93
3406 3962 4.828925 GCACTCTGGAGGCCTCGC 62.829 72.222 26.36 18.51 0.00 5.03
3407 3963 4.154347 GGCACTCTGGAGGCCTCG 62.154 72.222 26.36 14.89 39.85 4.63
3408 3964 3.791586 GGGCACTCTGGAGGCCTC 61.792 72.222 25.59 25.59 43.36 4.70
3410 3966 3.791586 GAGGGCACTCTGGAGGCC 61.792 72.222 9.30 16.40 46.10 5.19
3411 3967 1.919600 ATTGAGGGCACTCTGGAGGC 61.920 60.000 18.70 3.16 44.29 4.70
3412 3968 0.622665 AATTGAGGGCACTCTGGAGG 59.377 55.000 18.70 0.00 44.29 4.30
3413 3969 1.681166 CCAATTGAGGGCACTCTGGAG 60.681 57.143 18.70 4.84 44.29 3.86
3414 3970 0.329261 CCAATTGAGGGCACTCTGGA 59.671 55.000 18.70 3.49 44.29 3.86
3415 3971 2.877975 CCAATTGAGGGCACTCTGG 58.122 57.895 18.70 13.05 44.29 3.86
3423 3979 1.162800 GCTAGCGAGCCAATTGAGGG 61.163 60.000 7.71 0.00 43.49 4.30
3424 3980 2.315246 GCTAGCGAGCCAATTGAGG 58.685 57.895 7.71 0.00 43.49 3.86
3434 3990 0.798771 GTTGTCGTCCTGCTAGCGAG 60.799 60.000 10.77 8.58 35.22 5.03
3435 3991 1.211969 GTTGTCGTCCTGCTAGCGA 59.788 57.895 10.77 0.00 0.00 4.93
3436 3992 0.666274 TTGTTGTCGTCCTGCTAGCG 60.666 55.000 10.77 4.90 0.00 4.26
3437 3993 0.790814 GTTGTTGTCGTCCTGCTAGC 59.209 55.000 8.10 8.10 0.00 3.42
3438 3994 1.060713 CGTTGTTGTCGTCCTGCTAG 58.939 55.000 0.00 0.00 0.00 3.42
3439 3995 0.942410 GCGTTGTTGTCGTCCTGCTA 60.942 55.000 0.00 0.00 0.00 3.49
3440 3996 2.244651 GCGTTGTTGTCGTCCTGCT 61.245 57.895 0.00 0.00 0.00 4.24
3441 3997 2.248431 GCGTTGTTGTCGTCCTGC 59.752 61.111 0.00 0.00 0.00 4.85
3442 3998 2.935955 GGCGTTGTTGTCGTCCTG 59.064 61.111 0.00 0.00 0.00 3.86
3445 4001 2.589442 TGGGGCGTTGTTGTCGTC 60.589 61.111 0.00 0.00 0.00 4.20
3446 4002 2.590575 CTGGGGCGTTGTTGTCGT 60.591 61.111 0.00 0.00 0.00 4.34
3447 4003 3.353836 CCTGGGGCGTTGTTGTCG 61.354 66.667 0.00 0.00 0.00 4.35
3448 4004 3.670377 GCCTGGGGCGTTGTTGTC 61.670 66.667 0.00 0.00 39.62 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.