Multiple sequence alignment - TraesCS3D01G512400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G512400 chr3D 100.000 5074 0 0 1 5074 596911135 596916208 0.000000e+00 9371.0
1 TraesCS3D01G512400 chr3D 87.324 710 61 11 1 687 538480564 538479861 0.000000e+00 785.0
2 TraesCS3D01G512400 chr3D 88.652 141 13 2 4607 4746 128214007 128214145 8.740000e-38 169.0
3 TraesCS3D01G512400 chr3D 86.713 143 15 3 4607 4746 546470387 546470246 6.800000e-34 156.0
4 TraesCS3D01G512400 chr3D 100.000 42 0 0 4930 4971 596916023 596916064 1.510000e-10 78.7
5 TraesCS3D01G512400 chr3D 100.000 42 0 0 4889 4930 596916064 596916105 1.510000e-10 78.7
6 TraesCS3D01G512400 chr3B 87.767 3507 241 83 1504 4930 802851760 802848362 0.000000e+00 3927.0
7 TraesCS3D01G512400 chr3B 95.484 155 6 1 992 1145 802852256 802852102 3.920000e-61 246.0
8 TraesCS3D01G512400 chr3B 93.007 143 9 1 4930 5071 802848403 802848261 1.850000e-49 207.0
9 TraesCS3D01G512400 chr3A 88.396 1939 150 32 1504 3418 727068477 727070364 0.000000e+00 2265.0
10 TraesCS3D01G512400 chr3A 95.420 917 37 2 3444 4359 727070357 727071269 0.000000e+00 1456.0
11 TraesCS3D01G512400 chr3A 79.200 500 39 24 4471 4923 727071405 727071886 2.310000e-73 287.0
12 TraesCS3D01G512400 chr3A 95.327 107 4 1 988 1093 727067765 727067871 8.740000e-38 169.0
13 TraesCS3D01G512400 chr3A 89.394 132 13 1 4930 5060 727071852 727071983 1.130000e-36 165.0
14 TraesCS3D01G512400 chr6B 89.162 692 62 7 1 681 454767144 454766455 0.000000e+00 850.0
15 TraesCS3D01G512400 chr1D 88.873 701 52 7 1 680 77746549 77745854 0.000000e+00 839.0
16 TraesCS3D01G512400 chr7D 88.604 702 58 8 1 681 619073126 619072426 0.000000e+00 833.0
17 TraesCS3D01G512400 chr7D 88.169 710 56 11 1 687 87678615 87677911 0.000000e+00 821.0
18 TraesCS3D01G512400 chr7D 87.288 708 58 10 2 679 599868736 599868031 0.000000e+00 780.0
19 TraesCS3D01G512400 chr2D 88.336 703 55 11 1 681 364830466 364831163 0.000000e+00 819.0
20 TraesCS3D01G512400 chr2D 86.486 148 11 7 4603 4745 12258245 12258388 2.450000e-33 154.0
21 TraesCS3D01G512400 chr6A 88.051 703 62 7 1 681 457405782 457406484 0.000000e+00 813.0
22 TraesCS3D01G512400 chr5D 88.269 699 56 8 3 681 535592166 535592858 0.000000e+00 813.0
23 TraesCS3D01G512400 chr5D 88.235 136 14 2 4607 4742 97073710 97073843 1.460000e-35 161.0
24 TraesCS3D01G512400 chr4A 87.714 700 56 8 1 679 526638891 526639581 0.000000e+00 789.0
25 TraesCS3D01G512400 chr5B 89.362 141 12 2 4607 4746 194185146 194185008 1.880000e-39 174.0
26 TraesCS3D01G512400 chr7A 86.525 141 16 2 4607 4746 1528795 1528657 8.800000e-33 152.0
27 TraesCS3D01G512400 chr1B 86.429 140 17 1 4607 4746 314565699 314565562 8.800000e-33 152.0
28 TraesCS3D01G512400 chr4D 85.714 147 13 5 4604 4745 105124115 105124258 1.140000e-31 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G512400 chr3D 596911135 596916208 5073 False 3176.133333 9371 100.0000 1 5074 3 chr3D.!!$F2 5073
1 TraesCS3D01G512400 chr3D 538479861 538480564 703 True 785.000000 785 87.3240 1 687 1 chr3D.!!$R1 686
2 TraesCS3D01G512400 chr3B 802848261 802852256 3995 True 1460.000000 3927 92.0860 992 5071 3 chr3B.!!$R1 4079
3 TraesCS3D01G512400 chr3A 727067765 727071983 4218 False 868.400000 2265 89.5474 988 5060 5 chr3A.!!$F1 4072
4 TraesCS3D01G512400 chr6B 454766455 454767144 689 True 850.000000 850 89.1620 1 681 1 chr6B.!!$R1 680
5 TraesCS3D01G512400 chr1D 77745854 77746549 695 True 839.000000 839 88.8730 1 680 1 chr1D.!!$R1 679
6 TraesCS3D01G512400 chr7D 619072426 619073126 700 True 833.000000 833 88.6040 1 681 1 chr7D.!!$R3 680
7 TraesCS3D01G512400 chr7D 87677911 87678615 704 True 821.000000 821 88.1690 1 687 1 chr7D.!!$R1 686
8 TraesCS3D01G512400 chr7D 599868031 599868736 705 True 780.000000 780 87.2880 2 679 1 chr7D.!!$R2 677
9 TraesCS3D01G512400 chr2D 364830466 364831163 697 False 819.000000 819 88.3360 1 681 1 chr2D.!!$F2 680
10 TraesCS3D01G512400 chr6A 457405782 457406484 702 False 813.000000 813 88.0510 1 681 1 chr6A.!!$F1 680
11 TraesCS3D01G512400 chr5D 535592166 535592858 692 False 813.000000 813 88.2690 3 681 1 chr5D.!!$F2 678
12 TraesCS3D01G512400 chr4A 526638891 526639581 690 False 789.000000 789 87.7140 1 679 1 chr4A.!!$F1 678

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
683 726 0.037232 GACGTAGCAAGTGGGCTTCT 60.037 55.000 0.00 0.0 42.71 2.85 F
1354 1553 0.042188 CGGTCGTTGCAGACAGTTTG 60.042 55.000 8.22 0.0 42.62 2.93 F
1544 1817 0.035458 ACTTCTGAAACTCCAGCGGG 59.965 55.000 0.00 0.0 34.28 6.13 F
1900 2193 0.039618 TGTTCCATTCCAAGGCTCCC 59.960 55.000 0.00 0.0 0.00 4.30 F
1903 2196 0.552848 TCCATTCCAAGGCTCCCATC 59.447 55.000 0.00 0.0 0.00 3.51 F
3204 3508 1.068895 CCAGCATTTGGTCAAGCAACA 59.931 47.619 0.00 0.0 42.41 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1526 1799 0.035458 ACCCGCTGGAGTTTCAGAAG 59.965 55.000 0.00 0.00 36.93 2.85 R
3345 3649 0.511221 TGCGCTAAAACGAACAGAGC 59.489 50.000 9.73 0.00 35.90 4.09 R
3437 3741 1.202521 GCCAAGGAAAACAACACCAGG 60.203 52.381 0.00 0.00 0.00 4.45 R
3753 4096 0.949105 GTCCGCGGTGTCTCAACAAT 60.949 55.000 27.15 0.00 37.08 2.71 R
3829 4172 1.529622 CCAGCATTTACATGTCGTGCG 60.530 52.381 18.46 14.56 40.54 5.34 R
4765 5218 0.040514 CGCACGCAGTCCATTTTGAA 60.041 50.000 0.00 0.00 41.61 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 52 2.411935 GCAAAAACTAAGACGGCCGTAC 60.412 50.000 34.36 23.92 0.00 3.67
104 108 7.503566 AGTTTGACTGATTCCAGAAAAAGATGA 59.496 33.333 0.00 0.00 43.02 2.92
118 125 9.985318 CAGAAAAAGATGAATCTAGTTAAGCAG 57.015 33.333 0.00 0.00 35.76 4.24
160 167 2.415697 CCAACGGTGGTAGCAAAAAG 57.584 50.000 12.69 0.00 40.42 2.27
181 188 5.637006 AGCAAAACGATGGTAGCAAATTA 57.363 34.783 0.00 0.00 0.00 1.40
187 194 6.767524 AACGATGGTAGCAAATTATTGGAA 57.232 33.333 0.00 0.00 37.02 3.53
272 281 4.028490 AAATCCAGGCGCCGGTGA 62.028 61.111 28.39 22.94 0.00 4.02
315 324 0.109319 GCAAAATCGCATCACCGGTT 60.109 50.000 2.97 0.00 31.99 4.44
343 359 3.052082 CCAGCCTCACCTGTTGCG 61.052 66.667 0.00 0.00 0.00 4.85
427 450 0.331954 TCAGCCCTCGAGTACTCCTT 59.668 55.000 17.23 0.00 0.00 3.36
482 505 1.868498 CCGTCTCGACCAGATCTAGAC 59.132 57.143 11.17 11.17 43.54 2.59
487 510 2.089201 TCGACCAGATCTAGACGCAAA 58.911 47.619 8.00 0.00 0.00 3.68
559 592 2.524394 TAGGGGATGAGGAGCGGC 60.524 66.667 0.00 0.00 0.00 6.53
591 624 0.892063 GGATGAGATAGGAGCGGGAC 59.108 60.000 0.00 0.00 0.00 4.46
619 662 1.448119 GGGCAAAGGGATAAGAGCGC 61.448 60.000 0.00 0.00 0.00 5.92
681 724 1.374252 CGACGTAGCAAGTGGGCTT 60.374 57.895 0.00 0.00 42.71 4.35
683 726 0.037232 GACGTAGCAAGTGGGCTTCT 60.037 55.000 0.00 0.00 42.71 2.85
711 754 4.394712 CCCCACACCCAGCGAGAC 62.395 72.222 0.00 0.00 0.00 3.36
712 755 4.394712 CCCACACCCAGCGAGACC 62.395 72.222 0.00 0.00 0.00 3.85
713 756 4.394712 CCACACCCAGCGAGACCC 62.395 72.222 0.00 0.00 0.00 4.46
714 757 4.742201 CACACCCAGCGAGACCCG 62.742 72.222 0.00 0.00 42.21 5.28
724 767 3.948719 GAGACCCGCCAACCCACA 61.949 66.667 0.00 0.00 0.00 4.17
725 768 3.901797 GAGACCCGCCAACCCACAG 62.902 68.421 0.00 0.00 0.00 3.66
729 772 4.954970 CCGCCAACCCACAGCTGT 62.955 66.667 15.25 15.25 0.00 4.40
730 773 2.031919 CGCCAACCCACAGCTGTA 59.968 61.111 21.20 0.00 0.00 2.74
731 774 2.034879 CGCCAACCCACAGCTGTAG 61.035 63.158 21.20 16.48 0.00 2.74
732 775 2.335712 GCCAACCCACAGCTGTAGC 61.336 63.158 21.20 11.72 42.49 3.58
733 776 1.073025 CCAACCCACAGCTGTAGCA 59.927 57.895 21.20 0.00 45.16 3.49
734 777 0.322816 CCAACCCACAGCTGTAGCAT 60.323 55.000 21.20 3.67 45.16 3.79
735 778 1.089920 CAACCCACAGCTGTAGCATC 58.910 55.000 21.20 0.00 45.16 3.91
736 779 0.692476 AACCCACAGCTGTAGCATCA 59.308 50.000 21.20 0.00 45.16 3.07
737 780 0.692476 ACCCACAGCTGTAGCATCAA 59.308 50.000 21.20 0.00 45.16 2.57
738 781 1.283029 ACCCACAGCTGTAGCATCAAT 59.717 47.619 21.20 0.00 45.16 2.57
739 782 1.945394 CCCACAGCTGTAGCATCAATC 59.055 52.381 21.20 0.00 45.16 2.67
740 783 2.635714 CCACAGCTGTAGCATCAATCA 58.364 47.619 21.20 0.00 45.16 2.57
741 784 3.011818 CCACAGCTGTAGCATCAATCAA 58.988 45.455 21.20 0.00 45.16 2.57
742 785 3.630769 CCACAGCTGTAGCATCAATCAAT 59.369 43.478 21.20 0.00 45.16 2.57
743 786 4.261072 CCACAGCTGTAGCATCAATCAATC 60.261 45.833 21.20 0.00 45.16 2.67
744 787 3.881688 ACAGCTGTAGCATCAATCAATCC 59.118 43.478 20.16 0.00 45.16 3.01
745 788 3.059120 CAGCTGTAGCATCAATCAATCCG 60.059 47.826 5.25 0.00 45.16 4.18
746 789 2.874701 GCTGTAGCATCAATCAATCCGT 59.125 45.455 0.00 0.00 41.59 4.69
747 790 3.059325 GCTGTAGCATCAATCAATCCGTC 60.059 47.826 0.00 0.00 41.59 4.79
748 791 3.466836 TGTAGCATCAATCAATCCGTCC 58.533 45.455 0.00 0.00 0.00 4.79
749 792 3.134623 TGTAGCATCAATCAATCCGTCCT 59.865 43.478 0.00 0.00 0.00 3.85
750 793 2.843701 AGCATCAATCAATCCGTCCTC 58.156 47.619 0.00 0.00 0.00 3.71
751 794 1.528586 GCATCAATCAATCCGTCCTCG 59.471 52.381 0.00 0.00 0.00 4.63
752 795 1.528586 CATCAATCAATCCGTCCTCGC 59.471 52.381 0.00 0.00 35.54 5.03
753 796 0.824109 TCAATCAATCCGTCCTCGCT 59.176 50.000 0.00 0.00 35.54 4.93
754 797 1.202417 TCAATCAATCCGTCCTCGCTC 60.202 52.381 0.00 0.00 35.54 5.03
755 798 0.249073 AATCAATCCGTCCTCGCTCG 60.249 55.000 0.00 0.00 35.54 5.03
756 799 2.685387 ATCAATCCGTCCTCGCTCGC 62.685 60.000 0.00 0.00 35.54 5.03
757 800 3.141488 AATCCGTCCTCGCTCGCT 61.141 61.111 0.00 0.00 35.54 4.93
758 801 3.127352 AATCCGTCCTCGCTCGCTC 62.127 63.158 0.00 0.00 35.54 5.03
772 815 4.374702 GCTCGCGCGGCCATATTG 62.375 66.667 31.69 10.73 0.00 1.90
773 816 3.716006 CTCGCGCGGCCATATTGG 61.716 66.667 31.69 5.23 41.55 3.16
774 817 4.228567 TCGCGCGGCCATATTGGA 62.229 61.111 31.69 2.53 40.96 3.53
775 818 3.276091 CGCGCGGCCATATTGGAA 61.276 61.111 24.84 0.00 40.96 3.53
776 819 2.829206 CGCGCGGCCATATTGGAAA 61.829 57.895 24.84 0.00 40.96 3.13
777 820 1.299089 GCGCGGCCATATTGGAAAC 60.299 57.895 8.83 0.00 40.96 2.78
778 821 1.724582 GCGCGGCCATATTGGAAACT 61.725 55.000 8.83 0.00 40.96 2.66
779 822 0.307760 CGCGGCCATATTGGAAACTC 59.692 55.000 2.24 0.00 40.96 3.01
780 823 0.307760 GCGGCCATATTGGAAACTCG 59.692 55.000 2.24 0.00 40.96 4.18
781 824 1.663695 CGGCCATATTGGAAACTCGT 58.336 50.000 2.24 0.00 40.96 4.18
782 825 2.014128 CGGCCATATTGGAAACTCGTT 58.986 47.619 2.24 0.00 40.96 3.85
783 826 2.031683 CGGCCATATTGGAAACTCGTTC 59.968 50.000 2.24 0.00 40.96 3.95
789 832 2.745100 GGAAACTCGTTCCGGGCC 60.745 66.667 0.00 0.00 46.51 5.80
790 833 3.116531 GAAACTCGTTCCGGGCCG 61.117 66.667 21.46 21.46 0.00 6.13
791 834 3.871248 GAAACTCGTTCCGGGCCGT 62.871 63.158 26.32 1.59 0.00 5.68
792 835 3.465258 AAACTCGTTCCGGGCCGTT 62.465 57.895 26.32 7.60 0.00 4.44
793 836 3.871248 AACTCGTTCCGGGCCGTTC 62.871 63.158 26.32 13.23 0.00 3.95
806 849 4.187056 CGTTCCCGGCTCTTCTTC 57.813 61.111 0.00 0.00 0.00 2.87
807 850 1.805945 CGTTCCCGGCTCTTCTTCG 60.806 63.158 0.00 0.00 0.00 3.79
808 851 2.101233 GTTCCCGGCTCTTCTTCGC 61.101 63.158 0.00 0.00 0.00 4.70
809 852 2.579657 TTCCCGGCTCTTCTTCGCA 61.580 57.895 0.00 0.00 0.00 5.10
810 853 2.781595 TTCCCGGCTCTTCTTCGCAC 62.782 60.000 0.00 0.00 0.00 5.34
811 854 3.181967 CCGGCTCTTCTTCGCACG 61.182 66.667 0.00 0.00 0.00 5.34
812 855 2.430921 CGGCTCTTCTTCGCACGT 60.431 61.111 0.00 0.00 0.00 4.49
813 856 2.720758 CGGCTCTTCTTCGCACGTG 61.721 63.158 12.28 12.28 0.00 4.49
814 857 2.383527 GGCTCTTCTTCGCACGTGG 61.384 63.158 18.88 7.71 0.00 4.94
815 858 1.664965 GCTCTTCTTCGCACGTGGT 60.665 57.895 18.88 0.00 0.00 4.16
816 859 1.891060 GCTCTTCTTCGCACGTGGTG 61.891 60.000 18.88 4.95 36.51 4.17
817 860 1.284982 CTCTTCTTCGCACGTGGTGG 61.285 60.000 18.88 5.42 33.64 4.61
818 861 1.594293 CTTCTTCGCACGTGGTGGT 60.594 57.895 18.88 0.00 33.64 4.16
819 862 0.319211 CTTCTTCGCACGTGGTGGTA 60.319 55.000 18.88 0.00 33.64 3.25
820 863 0.598158 TTCTTCGCACGTGGTGGTAC 60.598 55.000 18.88 0.00 33.64 3.34
830 873 3.969119 GGTGGTACGGGCCCCAAA 61.969 66.667 18.66 0.00 31.17 3.28
831 874 2.360726 GTGGTACGGGCCCCAAAG 60.361 66.667 18.66 4.11 31.17 2.77
832 875 4.354162 TGGTACGGGCCCCAAAGC 62.354 66.667 18.66 12.10 0.00 3.51
833 876 4.043100 GGTACGGGCCCCAAAGCT 62.043 66.667 18.66 0.00 0.00 3.74
834 877 2.672181 GGTACGGGCCCCAAAGCTA 61.672 63.158 18.66 0.00 0.00 3.32
835 878 1.153229 GTACGGGCCCCAAAGCTAG 60.153 63.158 18.66 0.96 0.00 3.42
836 879 3.038945 TACGGGCCCCAAAGCTAGC 62.039 63.158 18.66 6.62 0.00 3.42
837 880 4.115199 CGGGCCCCAAAGCTAGCT 62.115 66.667 18.66 12.68 0.00 3.32
838 881 2.440980 GGGCCCCAAAGCTAGCTG 60.441 66.667 20.16 7.58 0.00 4.24
839 882 2.677228 GGCCCCAAAGCTAGCTGA 59.323 61.111 20.16 0.00 0.00 4.26
840 883 1.000896 GGCCCCAAAGCTAGCTGAA 60.001 57.895 20.16 0.00 0.00 3.02
841 884 1.034292 GGCCCCAAAGCTAGCTGAAG 61.034 60.000 20.16 11.04 0.00 3.02
842 885 1.661498 GCCCCAAAGCTAGCTGAAGC 61.661 60.000 20.16 13.34 43.11 3.86
843 886 1.034292 CCCCAAAGCTAGCTGAAGCC 61.034 60.000 20.16 0.00 43.86 4.35
844 887 1.034292 CCCAAAGCTAGCTGAAGCCC 61.034 60.000 20.16 0.00 43.86 5.19
845 888 0.322816 CCAAAGCTAGCTGAAGCCCA 60.323 55.000 20.16 0.00 43.86 5.36
846 889 1.684248 CCAAAGCTAGCTGAAGCCCAT 60.684 52.381 20.16 0.00 43.86 4.00
847 890 1.404391 CAAAGCTAGCTGAAGCCCATG 59.596 52.381 20.16 4.08 43.86 3.66
848 891 0.106819 AAGCTAGCTGAAGCCCATGG 60.107 55.000 20.16 4.14 43.86 3.66
849 892 1.527844 GCTAGCTGAAGCCCATGGG 60.528 63.158 27.87 27.87 43.38 4.00
866 909 3.265601 GCCCCAAGCCCATATCCT 58.734 61.111 0.00 0.00 34.35 3.24
867 910 1.543690 GCCCCAAGCCCATATCCTT 59.456 57.895 0.00 0.00 34.35 3.36
868 911 0.540597 GCCCCAAGCCCATATCCTTC 60.541 60.000 0.00 0.00 34.35 3.46
869 912 0.852842 CCCCAAGCCCATATCCTTCA 59.147 55.000 0.00 0.00 0.00 3.02
870 913 1.202976 CCCCAAGCCCATATCCTTCAG 60.203 57.143 0.00 0.00 0.00 3.02
871 914 1.613836 CCAAGCCCATATCCTTCAGC 58.386 55.000 0.00 0.00 0.00 4.26
872 915 1.144503 CCAAGCCCATATCCTTCAGCT 59.855 52.381 0.00 0.00 0.00 4.24
873 916 2.373169 CCAAGCCCATATCCTTCAGCTA 59.627 50.000 0.00 0.00 0.00 3.32
874 917 3.406764 CAAGCCCATATCCTTCAGCTAC 58.593 50.000 0.00 0.00 0.00 3.58
875 918 1.981495 AGCCCATATCCTTCAGCTACC 59.019 52.381 0.00 0.00 0.00 3.18
876 919 1.699634 GCCCATATCCTTCAGCTACCA 59.300 52.381 0.00 0.00 0.00 3.25
877 920 2.106511 GCCCATATCCTTCAGCTACCAA 59.893 50.000 0.00 0.00 0.00 3.67
878 921 3.808618 GCCCATATCCTTCAGCTACCAAG 60.809 52.174 0.00 0.00 0.00 3.61
892 935 2.614829 ACCAAGCAAGAACGTACTGT 57.385 45.000 0.00 0.00 0.00 3.55
893 936 3.738830 ACCAAGCAAGAACGTACTGTA 57.261 42.857 0.00 0.00 0.00 2.74
894 937 4.062677 ACCAAGCAAGAACGTACTGTAA 57.937 40.909 0.00 0.00 0.00 2.41
895 938 3.805971 ACCAAGCAAGAACGTACTGTAAC 59.194 43.478 0.00 0.00 0.00 2.50
896 939 3.805422 CCAAGCAAGAACGTACTGTAACA 59.195 43.478 0.00 0.00 0.00 2.41
897 940 4.084537 CCAAGCAAGAACGTACTGTAACAG 60.085 45.833 0.00 0.00 37.52 3.16
898 941 3.057734 AGCAAGAACGTACTGTAACAGC 58.942 45.455 0.00 0.00 34.37 4.40
899 942 2.157085 GCAAGAACGTACTGTAACAGCC 59.843 50.000 0.00 0.00 34.37 4.85
900 943 3.650139 CAAGAACGTACTGTAACAGCCT 58.350 45.455 0.00 0.00 34.37 4.58
901 944 4.801891 CAAGAACGTACTGTAACAGCCTA 58.198 43.478 0.00 0.00 34.37 3.93
902 945 4.431661 AGAACGTACTGTAACAGCCTAC 57.568 45.455 0.00 0.00 34.37 3.18
903 946 3.822735 AGAACGTACTGTAACAGCCTACA 59.177 43.478 0.00 0.00 34.37 2.74
909 952 1.913778 TGTAACAGCCTACAGACCGA 58.086 50.000 0.00 0.00 0.00 4.69
910 953 1.816835 TGTAACAGCCTACAGACCGAG 59.183 52.381 0.00 0.00 0.00 4.63
911 954 1.817447 GTAACAGCCTACAGACCGAGT 59.183 52.381 0.00 0.00 0.00 4.18
912 955 0.603569 AACAGCCTACAGACCGAGTG 59.396 55.000 0.00 0.00 0.00 3.51
913 956 1.153745 CAGCCTACAGACCGAGTGC 60.154 63.158 0.00 0.00 0.00 4.40
914 957 2.202623 GCCTACAGACCGAGTGCG 60.203 66.667 0.00 0.00 37.24 5.34
945 988 4.054455 CCACCGCGTTCGTCGTTG 62.054 66.667 4.92 4.72 42.13 4.10
946 989 4.054455 CACCGCGTTCGTCGTTGG 62.054 66.667 4.92 11.55 42.13 3.77
947 990 4.268939 ACCGCGTTCGTCGTTGGA 62.269 61.111 4.92 0.00 42.13 3.53
948 991 3.759828 CCGCGTTCGTCGTTGGAC 61.760 66.667 4.92 0.00 42.13 4.02
949 992 3.025743 CGCGTTCGTCGTTGGACA 61.026 61.111 0.00 0.00 43.61 4.02
950 993 2.578679 CGCGTTCGTCGTTGGACAA 61.579 57.895 0.00 0.00 43.61 3.18
951 994 1.200839 GCGTTCGTCGTTGGACAAG 59.799 57.895 0.00 0.00 43.61 3.16
952 995 1.200839 CGTTCGTCGTTGGACAAGC 59.799 57.895 0.00 0.00 43.61 4.01
953 996 1.213094 CGTTCGTCGTTGGACAAGCT 61.213 55.000 0.00 0.00 43.61 3.74
954 997 0.507358 GTTCGTCGTTGGACAAGCTC 59.493 55.000 0.00 0.00 43.61 4.09
955 998 0.599204 TTCGTCGTTGGACAAGCTCC 60.599 55.000 0.00 0.00 43.61 4.70
956 999 2.372690 CGTCGTTGGACAAGCTCCG 61.373 63.158 0.00 0.00 43.03 4.63
957 1000 1.300697 GTCGTTGGACAAGCTCCGT 60.301 57.895 0.00 0.00 43.03 4.69
958 1001 1.006571 TCGTTGGACAAGCTCCGTC 60.007 57.895 7.54 7.54 43.03 4.79
959 1002 2.372690 CGTTGGACAAGCTCCGTCG 61.373 63.158 9.45 2.52 43.03 5.12
960 1003 2.357034 TTGGACAAGCTCCGTCGC 60.357 61.111 9.45 4.66 43.03 5.19
961 1004 3.876589 TTGGACAAGCTCCGTCGCC 62.877 63.158 9.45 0.03 43.03 5.54
982 1025 4.521062 CCGAGCCCGAGCAAGGAG 62.521 72.222 0.00 0.00 43.56 3.69
983 1026 3.452786 CGAGCCCGAGCAAGGAGA 61.453 66.667 0.00 0.00 43.56 3.71
984 1027 2.498726 GAGCCCGAGCAAGGAGAG 59.501 66.667 0.00 0.00 43.56 3.20
985 1028 3.731653 GAGCCCGAGCAAGGAGAGC 62.732 68.421 0.00 0.00 43.56 4.09
986 1029 4.087892 GCCCGAGCAAGGAGAGCA 62.088 66.667 0.00 0.00 39.53 4.26
987 1030 2.186384 CCCGAGCAAGGAGAGCAG 59.814 66.667 0.00 0.00 0.00 4.24
988 1031 2.186384 CCGAGCAAGGAGAGCAGG 59.814 66.667 0.00 0.00 0.00 4.85
989 1032 2.511145 CGAGCAAGGAGAGCAGGC 60.511 66.667 0.00 0.00 0.00 4.85
990 1033 2.511145 GAGCAAGGAGAGCAGGCG 60.511 66.667 0.00 0.00 0.00 5.52
1119 1162 1.075600 CCTCCTCTCCAGGTCCCTC 60.076 68.421 0.00 0.00 41.28 4.30
1167 1324 3.479203 CCCTACCCATCTGCCGCA 61.479 66.667 0.00 0.00 0.00 5.69
1170 1327 1.302033 CTACCCATCTGCCGCATCC 60.302 63.158 0.00 0.00 0.00 3.51
1172 1329 4.552365 CCCATCTGCCGCATCCGT 62.552 66.667 0.00 0.00 0.00 4.69
1186 1343 1.526887 CATCCGTTTCCATCGAATCCG 59.473 52.381 0.00 0.00 37.07 4.18
1188 1345 0.179094 CCGTTTCCATCGAATCCGGA 60.179 55.000 6.61 6.61 41.74 5.14
1244 1401 1.623686 ATGGGGCTGGGATTCCTGT 60.624 57.895 2.01 0.00 34.83 4.00
1264 1421 3.866582 CCGTGGGGCTCCTGGATC 61.867 72.222 3.07 0.00 33.06 3.36
1298 1489 1.830836 GCTAGGGTTAGCCTGGTCC 59.169 63.158 13.86 0.00 45.34 4.46
1304 1495 3.712907 TTAGCCTGGTCCGGTGCC 61.713 66.667 0.00 6.07 0.00 5.01
1328 1519 0.248702 GCTTCGTGAGATCCGTCCTC 60.249 60.000 0.00 0.00 41.60 3.71
1339 1536 4.803426 CGTCCTCTGCTGCCGGTC 62.803 72.222 1.90 0.00 0.00 4.79
1350 1547 3.414700 GCCGGTCGTTGCAGACAG 61.415 66.667 1.90 4.17 42.62 3.51
1354 1553 0.042188 CGGTCGTTGCAGACAGTTTG 60.042 55.000 8.22 0.00 42.62 2.93
1370 1569 2.136196 TTTGGTTTCATGGCGCGGAC 62.136 55.000 8.83 0.00 0.00 4.79
1403 1629 0.323451 GGATCTGGTTGGGTTGGACC 60.323 60.000 0.00 0.00 37.60 4.46
1421 1647 4.771127 GAGCTTGTCGAACCCACA 57.229 55.556 0.00 0.00 0.00 4.17
1422 1648 2.533318 GAGCTTGTCGAACCCACAG 58.467 57.895 0.00 0.00 0.00 3.66
1423 1649 1.569479 GAGCTTGTCGAACCCACAGC 61.569 60.000 0.00 0.00 0.00 4.40
1442 1694 6.261118 CACAGCTAGGATTTAACTTGCATTC 58.739 40.000 0.00 0.00 38.80 2.67
1450 1702 8.457238 AGGATTTAACTTGCATTCTTATCCTC 57.543 34.615 9.64 0.00 35.63 3.71
1464 1716 6.861065 TCTTATCCTCAAAGTGTTGTTCAC 57.139 37.500 0.00 0.00 46.46 3.18
1480 1732 4.488879 TGTTCACATGTCTCGATTCTCAG 58.511 43.478 0.00 0.00 0.00 3.35
1482 1734 2.493278 TCACATGTCTCGATTCTCAGCA 59.507 45.455 0.00 0.00 0.00 4.41
1483 1735 2.602211 CACATGTCTCGATTCTCAGCAC 59.398 50.000 0.00 0.00 0.00 4.40
1490 1742 3.891366 TCTCGATTCTCAGCACCATATCA 59.109 43.478 0.00 0.00 0.00 2.15
1491 1743 3.982475 TCGATTCTCAGCACCATATCAC 58.018 45.455 0.00 0.00 0.00 3.06
1493 1745 4.827284 TCGATTCTCAGCACCATATCACTA 59.173 41.667 0.00 0.00 0.00 2.74
1496 1748 2.623416 TCTCAGCACCATATCACTACCG 59.377 50.000 0.00 0.00 0.00 4.02
1500 1752 2.500098 AGCACCATATCACTACCGTGTT 59.500 45.455 0.00 0.00 41.89 3.32
1501 1753 3.702548 AGCACCATATCACTACCGTGTTA 59.297 43.478 0.00 0.00 41.89 2.41
1502 1754 4.049186 GCACCATATCACTACCGTGTTAG 58.951 47.826 0.00 0.00 41.89 2.34
1518 1791 2.056577 GTTAGTGTCGTTTGGACCTCG 58.943 52.381 0.00 0.00 45.46 4.63
1526 1799 1.077089 GTTTGGACCTCGCTCGCTAC 61.077 60.000 0.00 0.00 0.00 3.58
1530 1803 1.378124 GGACCTCGCTCGCTACTTCT 61.378 60.000 0.00 0.00 0.00 2.85
1537 1810 1.914700 CGCTCGCTACTTCTGAAACTC 59.085 52.381 0.00 0.00 0.00 3.01
1541 1814 1.996191 CGCTACTTCTGAAACTCCAGC 59.004 52.381 0.00 0.00 34.28 4.85
1542 1815 1.996191 GCTACTTCTGAAACTCCAGCG 59.004 52.381 0.00 0.00 34.28 5.18
1544 1817 0.035458 ACTTCTGAAACTCCAGCGGG 59.965 55.000 0.00 0.00 34.28 6.13
1554 1827 0.613777 CTCCAGCGGGTTTAGGAAGT 59.386 55.000 1.81 0.00 34.93 3.01
1565 1838 3.935828 GGTTTAGGAAGTGATGAGCAGTC 59.064 47.826 0.00 0.00 0.00 3.51
1570 1843 3.006247 GGAAGTGATGAGCAGTCCTTTC 58.994 50.000 0.00 0.00 31.82 2.62
1592 1865 0.951040 GCTGTGGTGTAGGCTGTGTC 60.951 60.000 0.00 0.00 0.00 3.67
1600 1873 1.760029 TGTAGGCTGTGTCAACTGTGA 59.240 47.619 0.00 0.00 0.00 3.58
1603 1876 2.224606 AGGCTGTGTCAACTGTGAATG 58.775 47.619 0.00 0.00 34.87 2.67
1619 1892 7.121382 ACTGTGAATGATGATAAATGGTCCTT 58.879 34.615 0.00 0.00 0.00 3.36
1620 1893 7.284034 ACTGTGAATGATGATAAATGGTCCTTC 59.716 37.037 0.00 0.00 0.00 3.46
1671 1957 3.305398 AGTCGAAGCGAAATTCAGTCT 57.695 42.857 0.00 0.00 37.72 3.24
1673 1959 3.430218 AGTCGAAGCGAAATTCAGTCTTG 59.570 43.478 0.00 0.00 37.72 3.02
1678 1964 2.225019 AGCGAAATTCAGTCTTGTGCTG 59.775 45.455 0.00 0.00 35.43 4.41
1680 1966 3.120060 GCGAAATTCAGTCTTGTGCTGAT 60.120 43.478 0.00 0.00 41.87 2.90
1731 2017 0.673644 CTTCGGTGGGAATGAAGCGT 60.674 55.000 0.00 0.00 38.39 5.07
1741 2034 5.815740 GTGGGAATGAAGCGTTAGAGATTAA 59.184 40.000 0.00 0.00 0.00 1.40
1747 2040 8.723942 AATGAAGCGTTAGAGATTAATTCAGT 57.276 30.769 0.00 0.00 0.00 3.41
1748 2041 7.757097 TGAAGCGTTAGAGATTAATTCAGTC 57.243 36.000 0.00 0.00 0.00 3.51
1760 2053 9.947669 GAGATTAATTCAGTCATCTTTTCCATG 57.052 33.333 0.00 0.00 0.00 3.66
1787 2080 2.076863 GGCTTTGTGACTATGAGCGTT 58.923 47.619 0.00 0.00 34.27 4.84
1790 2083 3.424962 GCTTTGTGACTATGAGCGTTTCC 60.425 47.826 0.00 0.00 0.00 3.13
1791 2084 3.394674 TTGTGACTATGAGCGTTTCCA 57.605 42.857 0.00 0.00 0.00 3.53
1794 2087 3.684305 TGTGACTATGAGCGTTTCCATTG 59.316 43.478 0.00 0.00 0.00 2.82
1812 2105 4.104738 CCATTGTATGGGTGGGATCTTAGT 59.895 45.833 0.00 0.00 46.86 2.24
1819 2112 4.801164 TGGGTGGGATCTTAGTACTACTC 58.199 47.826 0.91 0.25 0.00 2.59
1833 2126 6.578313 AGTACTACTCTGGACAGGAGAATA 57.422 41.667 0.00 0.00 35.10 1.75
1858 2151 2.358957 TGTGCTGTAACTGGCATCATC 58.641 47.619 0.00 0.00 40.66 2.92
1859 2152 2.290197 TGTGCTGTAACTGGCATCATCA 60.290 45.455 0.00 0.00 40.66 3.07
1864 2157 4.498682 GCTGTAACTGGCATCATCATTTCC 60.499 45.833 0.00 0.00 0.00 3.13
1878 2171 5.953548 TCATCATTTCCATTCCTGTGTGAAT 59.046 36.000 0.00 0.00 35.36 2.57
1879 2172 6.438108 TCATCATTTCCATTCCTGTGTGAATT 59.562 34.615 0.00 0.00 32.71 2.17
1880 2173 6.271488 TCATTTCCATTCCTGTGTGAATTC 57.729 37.500 0.00 0.00 32.71 2.17
1881 2174 6.012113 TCATTTCCATTCCTGTGTGAATTCT 58.988 36.000 7.05 0.00 32.71 2.40
1882 2175 5.710513 TTTCCATTCCTGTGTGAATTCTG 57.289 39.130 7.05 0.00 32.71 3.02
1883 2176 4.371624 TCCATTCCTGTGTGAATTCTGT 57.628 40.909 7.05 0.00 32.71 3.41
1884 2177 4.728772 TCCATTCCTGTGTGAATTCTGTT 58.271 39.130 7.05 0.00 32.71 3.16
1885 2178 4.761739 TCCATTCCTGTGTGAATTCTGTTC 59.238 41.667 7.05 0.00 32.71 3.18
1886 2179 4.082571 CCATTCCTGTGTGAATTCTGTTCC 60.083 45.833 7.05 0.00 32.71 3.62
1887 2180 3.855255 TCCTGTGTGAATTCTGTTCCA 57.145 42.857 7.05 0.00 0.00 3.53
1888 2181 4.371624 TCCTGTGTGAATTCTGTTCCAT 57.628 40.909 7.05 0.00 0.00 3.41
1889 2182 4.728772 TCCTGTGTGAATTCTGTTCCATT 58.271 39.130 7.05 0.00 0.00 3.16
1890 2183 4.761739 TCCTGTGTGAATTCTGTTCCATTC 59.238 41.667 7.05 0.00 0.00 2.67
1891 2184 4.082571 CCTGTGTGAATTCTGTTCCATTCC 60.083 45.833 7.05 0.00 0.00 3.01
1892 2185 4.468713 TGTGTGAATTCTGTTCCATTCCA 58.531 39.130 7.05 0.00 0.00 3.53
1893 2186 4.892345 TGTGTGAATTCTGTTCCATTCCAA 59.108 37.500 7.05 0.00 0.00 3.53
1894 2187 5.009911 TGTGTGAATTCTGTTCCATTCCAAG 59.990 40.000 7.05 0.00 0.00 3.61
1895 2188 4.523943 TGTGAATTCTGTTCCATTCCAAGG 59.476 41.667 7.05 0.00 0.00 3.61
1896 2189 3.511146 TGAATTCTGTTCCATTCCAAGGC 59.489 43.478 7.05 0.00 0.00 4.35
1897 2190 2.978156 TTCTGTTCCATTCCAAGGCT 57.022 45.000 0.00 0.00 0.00 4.58
1898 2191 2.496899 TCTGTTCCATTCCAAGGCTC 57.503 50.000 0.00 0.00 0.00 4.70
1899 2192 1.004745 TCTGTTCCATTCCAAGGCTCC 59.995 52.381 0.00 0.00 0.00 4.70
1900 2193 0.039618 TGTTCCATTCCAAGGCTCCC 59.960 55.000 0.00 0.00 0.00 4.30
1901 2194 0.039618 GTTCCATTCCAAGGCTCCCA 59.960 55.000 0.00 0.00 0.00 4.37
1902 2195 1.009997 TTCCATTCCAAGGCTCCCAT 58.990 50.000 0.00 0.00 0.00 4.00
1903 2196 0.552848 TCCATTCCAAGGCTCCCATC 59.447 55.000 0.00 0.00 0.00 3.51
1907 2200 1.075601 TTCCAAGGCTCCCATCTGTT 58.924 50.000 0.00 0.00 0.00 3.16
1915 2208 4.019174 AGGCTCCCATCTGTTTATTTGTG 58.981 43.478 0.00 0.00 0.00 3.33
1920 2213 4.457603 TCCCATCTGTTTATTTGTGTTCCG 59.542 41.667 0.00 0.00 0.00 4.30
1921 2214 4.380444 CCCATCTGTTTATTTGTGTTCCGG 60.380 45.833 0.00 0.00 0.00 5.14
1936 2229 3.243873 TGTTCCGGAGATATGCAGATCAC 60.244 47.826 22.54 16.25 0.00 3.06
1943 2236 2.029200 AGATATGCAGATCACGCAGAGG 60.029 50.000 22.54 0.00 43.88 3.69
1956 2249 1.442526 GCAGAGGTAGCGGCGTAGTA 61.443 60.000 9.37 0.00 0.00 1.82
2001 2294 3.433343 TGACCACCTGCAATTGATTCAT 58.567 40.909 10.34 0.00 0.00 2.57
2018 2311 5.361571 TGATTCATGATATTTTGCTGTGCCT 59.638 36.000 0.00 0.00 0.00 4.75
2019 2312 6.546772 TGATTCATGATATTTTGCTGTGCCTA 59.453 34.615 0.00 0.00 0.00 3.93
2020 2313 5.756195 TCATGATATTTTGCTGTGCCTAC 57.244 39.130 0.00 0.00 0.00 3.18
2024 2317 1.165270 ATTTTGCTGTGCCTACCGTC 58.835 50.000 0.00 0.00 0.00 4.79
2032 2325 3.707793 CTGTGCCTACCGTCTTTAGATC 58.292 50.000 0.00 0.00 0.00 2.75
2041 2334 7.623925 GCCTACCGTCTTTAGATCTAGAATACG 60.624 44.444 15.51 15.51 0.00 3.06
2046 2339 7.595502 CCGTCTTTAGATCTAGAATACGCAAAT 59.404 37.037 16.42 0.00 0.00 2.32
2086 2379 5.685511 GTGTTGCTAACTGGTTAACATTGTG 59.314 40.000 8.10 0.00 0.00 3.33
2125 2418 7.509318 ACCTAAGGCTATGTCTGTGATATACAA 59.491 37.037 0.00 0.00 39.20 2.41
2168 2461 4.278419 ACTTTTGAACTGCTTGGTATGACC 59.722 41.667 0.00 0.00 39.22 4.02
2180 2473 6.044287 TGCTTGGTATGACCCTATGACATAAT 59.956 38.462 0.00 0.00 37.50 1.28
2181 2474 6.595716 GCTTGGTATGACCCTATGACATAATC 59.404 42.308 0.00 0.00 37.50 1.75
2182 2475 7.625498 TTGGTATGACCCTATGACATAATCA 57.375 36.000 0.00 2.07 38.65 2.57
2183 2476 7.244886 TGGTATGACCCTATGACATAATCAG 57.755 40.000 0.00 0.00 37.98 2.90
2198 2491 7.654923 TGACATAATCAGTCAGAGCATATCAAC 59.345 37.037 0.00 0.00 40.80 3.18
2225 2518 7.922811 GGCCTTTCTAGATTGGAAATATGTTTG 59.077 37.037 13.75 0.00 33.12 2.93
2318 2611 7.923878 ACGTTGTTTTGGCTTATAAGTTTGATT 59.076 29.630 13.91 0.00 0.00 2.57
2518 2821 6.858478 CGGATGCCGTAGATATAGAATATGTG 59.142 42.308 0.00 0.00 42.73 3.21
2674 2977 5.646360 GGTAAGTTGTTGTGGTGCTACATAT 59.354 40.000 0.00 0.00 33.23 1.78
2685 2988 9.674068 TTGTGGTGCTACATATAAATGTTCTTA 57.326 29.630 0.00 0.00 44.07 2.10
2846 3150 8.786937 ACGAATTGTGTTCATATCATAATTGC 57.213 30.769 5.63 0.00 36.98 3.56
2867 3171 3.836949 CGGGATTTTCTGGTGATTGTTG 58.163 45.455 0.00 0.00 0.00 3.33
3204 3508 1.068895 CCAGCATTTGGTCAAGCAACA 59.931 47.619 0.00 0.00 42.41 3.33
3328 3632 3.747854 TCTGATTAGATGGCTGCTGAG 57.252 47.619 0.00 0.00 0.00 3.35
3345 3649 3.737774 GCTGAGCAAAGTTTTTAAGCCAG 59.262 43.478 0.00 8.49 0.00 4.85
3366 3670 1.792949 CTCTGTTCGTTTTAGCGCAGT 59.207 47.619 11.47 0.00 0.00 4.40
3416 3720 2.759355 TCTCCAAGATCCCGGTTGTAT 58.241 47.619 0.00 0.00 0.00 2.29
3417 3721 3.112263 TCTCCAAGATCCCGGTTGTATT 58.888 45.455 0.00 0.00 0.00 1.89
3418 3722 3.118408 TCTCCAAGATCCCGGTTGTATTG 60.118 47.826 0.00 0.00 0.00 1.90
3419 3723 2.574369 TCCAAGATCCCGGTTGTATTGT 59.426 45.455 0.00 0.00 0.00 2.71
3420 3724 3.775866 TCCAAGATCCCGGTTGTATTGTA 59.224 43.478 0.00 0.00 0.00 2.41
3421 3725 4.410883 TCCAAGATCCCGGTTGTATTGTAT 59.589 41.667 0.00 0.00 0.00 2.29
3422 3726 4.515191 CCAAGATCCCGGTTGTATTGTATG 59.485 45.833 0.00 0.00 0.00 2.39
3423 3727 3.740115 AGATCCCGGTTGTATTGTATGC 58.260 45.455 0.00 0.00 0.00 3.14
3424 3728 2.335316 TCCCGGTTGTATTGTATGCC 57.665 50.000 0.00 0.00 0.00 4.40
3425 3729 1.560146 TCCCGGTTGTATTGTATGCCA 59.440 47.619 0.00 0.00 0.00 4.92
3426 3730 2.026169 TCCCGGTTGTATTGTATGCCAA 60.026 45.455 0.00 0.00 37.49 4.52
3427 3731 2.755655 CCCGGTTGTATTGTATGCCAAA 59.244 45.455 0.00 0.00 36.44 3.28
3428 3732 3.428316 CCCGGTTGTATTGTATGCCAAAC 60.428 47.826 0.00 0.00 36.44 2.93
3429 3733 3.442273 CCGGTTGTATTGTATGCCAAACT 59.558 43.478 0.00 0.00 36.44 2.66
3430 3734 4.082463 CCGGTTGTATTGTATGCCAAACTT 60.082 41.667 0.00 0.00 36.44 2.66
3431 3735 5.465935 CGGTTGTATTGTATGCCAAACTTT 58.534 37.500 0.00 0.00 36.44 2.66
3432 3736 6.349445 CCGGTTGTATTGTATGCCAAACTTTA 60.349 38.462 0.00 0.00 36.44 1.85
3433 3737 7.254852 CGGTTGTATTGTATGCCAAACTTTAT 58.745 34.615 0.00 0.00 36.44 1.40
3434 3738 7.757624 CGGTTGTATTGTATGCCAAACTTTATT 59.242 33.333 0.00 0.00 36.44 1.40
3435 3739 9.430623 GGTTGTATTGTATGCCAAACTTTATTT 57.569 29.630 0.00 0.00 36.44 1.40
3438 3742 9.646427 TGTATTGTATGCCAAACTTTATTTTCC 57.354 29.630 0.00 0.00 36.44 3.13
3439 3743 9.869757 GTATTGTATGCCAAACTTTATTTTCCT 57.130 29.630 0.00 0.00 36.44 3.36
3440 3744 8.776376 ATTGTATGCCAAACTTTATTTTCCTG 57.224 30.769 0.00 0.00 36.44 3.86
3441 3745 6.696411 TGTATGCCAAACTTTATTTTCCTGG 58.304 36.000 0.00 0.00 0.00 4.45
3442 3746 5.823861 ATGCCAAACTTTATTTTCCTGGT 57.176 34.783 0.00 0.00 0.00 4.00
3443 3747 4.954875 TGCCAAACTTTATTTTCCTGGTG 58.045 39.130 0.00 0.00 0.00 4.17
3444 3748 4.407296 TGCCAAACTTTATTTTCCTGGTGT 59.593 37.500 0.00 0.00 0.00 4.16
3445 3749 5.104735 TGCCAAACTTTATTTTCCTGGTGTT 60.105 36.000 0.00 0.00 0.00 3.32
3446 3750 5.236263 GCCAAACTTTATTTTCCTGGTGTTG 59.764 40.000 0.00 0.00 0.00 3.33
3447 3751 6.345298 CCAAACTTTATTTTCCTGGTGTTGT 58.655 36.000 0.00 0.00 0.00 3.32
3620 3956 5.186992 TGCTGCTGTAATGGTAAGAACTAGA 59.813 40.000 0.00 0.00 0.00 2.43
3679 4022 1.071228 GTCCCTTAACAACGGACCTGT 59.929 52.381 0.00 0.00 40.23 4.00
3766 4109 8.542497 TTACACTATTACATTGTTGAGACACC 57.458 34.615 0.00 0.00 34.98 4.16
3787 4130 5.521010 CACCGCGGACAGTAATATCTTTTTA 59.479 40.000 35.90 0.00 0.00 1.52
3788 4131 6.202188 CACCGCGGACAGTAATATCTTTTTAT 59.798 38.462 35.90 0.00 0.00 1.40
3790 4133 7.281549 ACCGCGGACAGTAATATCTTTTTATTT 59.718 33.333 35.90 0.00 0.00 1.40
3829 4172 7.227512 AGCACTTATGTTTCCAAGTAGCATATC 59.772 37.037 0.00 0.00 33.29 1.63
3897 4240 7.066284 AGACAGTATAAGTGCATGATTCAAACC 59.934 37.037 0.00 0.00 0.00 3.27
4250 4599 6.039717 CCCTTATGAAGTTATGATGGGTTGTG 59.960 42.308 0.00 0.00 0.00 3.33
4268 4617 5.867716 GGTTGTGTATGGTACTTGTACTGAG 59.132 44.000 10.26 0.00 0.00 3.35
4274 4623 2.816087 TGGTACTTGTACTGAGACGGTC 59.184 50.000 10.26 0.00 0.00 4.79
4344 4693 1.403647 CGTCAGATTGGTGCTCGGTTA 60.404 52.381 0.00 0.00 0.00 2.85
4346 4695 2.673368 GTCAGATTGGTGCTCGGTTAAG 59.327 50.000 0.00 0.00 0.00 1.85
4465 4871 4.846779 TTTTCCTTGCTGTGTATGTTCC 57.153 40.909 0.00 0.00 0.00 3.62
4467 4873 0.447801 CCTTGCTGTGTATGTTCCGC 59.552 55.000 0.00 0.00 0.00 5.54
4519 4928 2.548707 GCTTGGTCATGACTGAGTGACA 60.549 50.000 24.50 9.92 44.99 3.58
4591 5015 6.917477 TCTGATTTAGTTCATGTGTGTTTTGC 59.083 34.615 0.00 0.00 0.00 3.68
4659 5111 4.691860 AGAGATTTCAAAATGGACTGCG 57.308 40.909 0.00 0.00 0.00 5.18
4671 5123 2.574450 TGGACTGCGTACGGATGTATA 58.426 47.619 18.39 4.57 32.11 1.47
4679 5131 6.259608 ACTGCGTACGGATGTATATATAGACC 59.740 42.308 18.39 0.00 32.11 3.85
4747 5200 7.716998 TCCATATTGGAATCTCTAAAAGACTGC 59.283 37.037 0.00 0.00 45.00 4.40
4749 5202 6.998968 ATTGGAATCTCTAAAAGACTGCAG 57.001 37.500 13.48 13.48 32.97 4.41
4751 5204 5.482908 TGGAATCTCTAAAAGACTGCAGAC 58.517 41.667 23.35 15.44 36.65 3.51
4752 5205 4.873259 GGAATCTCTAAAAGACTGCAGACC 59.127 45.833 23.35 11.74 36.65 3.85
4755 5208 7.418483 GGAATCTCTAAAAGACTGCAGACCTAT 60.418 40.741 23.35 11.48 36.65 2.57
4756 5209 6.859112 TCTCTAAAAGACTGCAGACCTATT 57.141 37.500 23.35 11.75 0.00 1.73
4757 5210 7.246171 TCTCTAAAAGACTGCAGACCTATTT 57.754 36.000 23.35 16.94 0.00 1.40
4758 5211 7.680730 TCTCTAAAAGACTGCAGACCTATTTT 58.319 34.615 23.35 17.99 0.00 1.82
4759 5212 8.812972 TCTCTAAAAGACTGCAGACCTATTTTA 58.187 33.333 23.35 18.14 0.00 1.52
4761 5214 8.812972 TCTAAAAGACTGCAGACCTATTTTAGA 58.187 33.333 27.66 27.66 41.67 2.10
4762 5215 7.913674 AAAAGACTGCAGACCTATTTTAGAG 57.086 36.000 23.35 0.00 0.00 2.43
4763 5216 6.859112 AAGACTGCAGACCTATTTTAGAGA 57.141 37.500 23.35 0.00 0.00 3.10
4764 5217 7.430760 AAGACTGCAGACCTATTTTAGAGAT 57.569 36.000 23.35 0.00 0.00 2.75
4765 5218 7.430760 AGACTGCAGACCTATTTTAGAGATT 57.569 36.000 23.35 0.00 0.00 2.40
4766 5219 7.856415 AGACTGCAGACCTATTTTAGAGATTT 58.144 34.615 23.35 0.00 0.00 2.17
4767 5220 7.984617 AGACTGCAGACCTATTTTAGAGATTTC 59.015 37.037 23.35 0.02 0.00 2.17
4768 5221 7.624549 ACTGCAGACCTATTTTAGAGATTTCA 58.375 34.615 23.35 0.00 0.00 2.69
4770 5223 8.862325 TGCAGACCTATTTTAGAGATTTCAAA 57.138 30.769 0.00 0.00 0.00 2.69
4771 5224 9.295825 TGCAGACCTATTTTAGAGATTTCAAAA 57.704 29.630 0.00 0.00 0.00 2.44
4780 5233 4.691860 AGAGATTTCAAAATGGACTGCG 57.308 40.909 0.00 0.00 0.00 5.18
4781 5234 4.074970 AGAGATTTCAAAATGGACTGCGT 58.925 39.130 0.00 0.00 0.00 5.24
4782 5235 4.083110 AGAGATTTCAAAATGGACTGCGTG 60.083 41.667 0.00 0.00 0.00 5.34
4784 5237 0.040514 TTCAAAATGGACTGCGTGCG 60.041 50.000 0.00 0.00 0.00 5.34
4786 5239 1.599518 AAAATGGACTGCGTGCGGA 60.600 52.632 7.84 0.00 0.00 5.54
4787 5240 0.960364 AAAATGGACTGCGTGCGGAT 60.960 50.000 7.84 0.00 0.00 4.18
4788 5241 1.647545 AAATGGACTGCGTGCGGATG 61.648 55.000 7.84 0.00 0.00 3.51
4789 5242 2.803155 AATGGACTGCGTGCGGATGT 62.803 55.000 7.84 0.00 0.00 3.06
4790 5243 1.955495 ATGGACTGCGTGCGGATGTA 61.955 55.000 7.84 0.00 0.00 2.29
4791 5244 1.227263 GGACTGCGTGCGGATGTAT 60.227 57.895 7.84 0.00 0.00 2.29
4792 5245 0.031585 GGACTGCGTGCGGATGTATA 59.968 55.000 7.84 0.00 0.00 1.47
4793 5246 1.336887 GGACTGCGTGCGGATGTATAT 60.337 52.381 7.84 0.00 0.00 0.86
4794 5247 2.094906 GGACTGCGTGCGGATGTATATA 60.095 50.000 7.84 0.00 0.00 0.86
4795 5248 3.571571 GACTGCGTGCGGATGTATATAA 58.428 45.455 7.84 0.00 0.00 0.98
4796 5249 3.985008 ACTGCGTGCGGATGTATATAAA 58.015 40.909 7.84 0.00 0.00 1.40
4797 5250 3.739300 ACTGCGTGCGGATGTATATAAAC 59.261 43.478 7.84 0.00 0.00 2.01
4798 5251 3.061322 TGCGTGCGGATGTATATAAACC 58.939 45.455 0.00 0.00 0.00 3.27
4799 5252 3.061322 GCGTGCGGATGTATATAAACCA 58.939 45.455 0.00 0.00 0.00 3.67
4800 5253 3.120786 GCGTGCGGATGTATATAAACCAC 60.121 47.826 0.00 0.00 0.00 4.16
4804 5257 4.746115 TGCGGATGTATATAAACCACGTTC 59.254 41.667 0.00 0.00 0.00 3.95
4810 5263 9.106070 GGATGTATATAAACCACGTTCTTCTTT 57.894 33.333 0.00 0.00 0.00 2.52
4913 5366 4.065789 CAAGGGAGAAAGTTGGTGTCTAC 58.934 47.826 0.00 0.00 0.00 2.59
4919 5372 1.755200 AAGTTGGTGTCTACCCCCAT 58.245 50.000 0.00 0.00 46.96 4.00
4920 5373 2.653543 AGTTGGTGTCTACCCCCATA 57.346 50.000 0.00 0.00 46.96 2.74
4921 5374 2.923908 AGTTGGTGTCTACCCCCATAA 58.076 47.619 0.00 0.00 46.96 1.90
4922 5375 3.470868 AGTTGGTGTCTACCCCCATAAT 58.529 45.455 0.00 0.00 46.96 1.28
4923 5376 3.856206 AGTTGGTGTCTACCCCCATAATT 59.144 43.478 0.00 0.00 46.96 1.40
4924 5377 3.943671 TGGTGTCTACCCCCATAATTG 57.056 47.619 0.00 0.00 46.96 2.32
4925 5378 2.092103 TGGTGTCTACCCCCATAATTGC 60.092 50.000 0.00 0.00 46.96 3.56
4926 5379 2.092103 GGTGTCTACCCCCATAATTGCA 60.092 50.000 0.00 0.00 41.36 4.08
4927 5380 2.949644 GTGTCTACCCCCATAATTGCAC 59.050 50.000 0.00 0.00 0.00 4.57
4928 5381 2.849943 TGTCTACCCCCATAATTGCACT 59.150 45.455 0.00 0.00 0.00 4.40
4929 5382 3.268334 TGTCTACCCCCATAATTGCACTT 59.732 43.478 0.00 0.00 0.00 3.16
4930 5383 4.264172 TGTCTACCCCCATAATTGCACTTT 60.264 41.667 0.00 0.00 0.00 2.66
4931 5384 4.709886 GTCTACCCCCATAATTGCACTTTT 59.290 41.667 0.00 0.00 0.00 2.27
4932 5385 4.953579 TCTACCCCCATAATTGCACTTTTC 59.046 41.667 0.00 0.00 0.00 2.29
4933 5386 3.515562 ACCCCCATAATTGCACTTTTCA 58.484 40.909 0.00 0.00 0.00 2.69
4934 5387 3.906846 ACCCCCATAATTGCACTTTTCAA 59.093 39.130 0.00 0.00 0.00 2.69
4935 5388 4.020307 ACCCCCATAATTGCACTTTTCAAG 60.020 41.667 0.00 0.00 0.00 3.02
4936 5389 4.506758 CCCCATAATTGCACTTTTCAAGG 58.493 43.478 0.00 0.00 0.00 3.61
4937 5390 4.506758 CCCATAATTGCACTTTTCAAGGG 58.493 43.478 0.00 0.00 34.12 3.95
4938 5391 4.222588 CCCATAATTGCACTTTTCAAGGGA 59.777 41.667 0.00 0.00 32.08 4.20
4939 5392 5.413499 CCATAATTGCACTTTTCAAGGGAG 58.587 41.667 0.00 0.00 32.08 4.30
4940 5393 5.185635 CCATAATTGCACTTTTCAAGGGAGA 59.814 40.000 0.00 0.00 32.08 3.71
4941 5394 6.295236 CCATAATTGCACTTTTCAAGGGAGAA 60.295 38.462 0.00 0.00 32.08 2.87
4942 5395 5.612725 AATTGCACTTTTCAAGGGAGAAA 57.387 34.783 0.00 0.00 35.82 2.52
4943 5396 4.654091 TTGCACTTTTCAAGGGAGAAAG 57.346 40.909 0.00 0.00 38.60 2.62
4944 5397 3.631250 TGCACTTTTCAAGGGAGAAAGT 58.369 40.909 0.00 0.00 38.60 2.66
4945 5398 4.023291 TGCACTTTTCAAGGGAGAAAGTT 58.977 39.130 0.00 0.00 38.60 2.66
4946 5399 4.142182 TGCACTTTTCAAGGGAGAAAGTTG 60.142 41.667 0.00 0.00 38.60 3.16
4947 5400 4.737649 GCACTTTTCAAGGGAGAAAGTTGG 60.738 45.833 0.00 0.00 38.60 3.77
4948 5401 4.402474 CACTTTTCAAGGGAGAAAGTTGGT 59.598 41.667 0.00 0.00 38.60 3.67
4949 5402 4.402474 ACTTTTCAAGGGAGAAAGTTGGTG 59.598 41.667 0.00 0.00 38.60 4.17
4950 5403 3.662759 TTCAAGGGAGAAAGTTGGTGT 57.337 42.857 0.00 0.00 0.00 4.16
4951 5404 3.208747 TCAAGGGAGAAAGTTGGTGTC 57.791 47.619 0.00 0.00 0.00 3.67
4952 5405 2.777692 TCAAGGGAGAAAGTTGGTGTCT 59.222 45.455 0.00 0.00 0.00 3.41
4953 5406 3.971305 TCAAGGGAGAAAGTTGGTGTCTA 59.029 43.478 0.00 0.00 0.00 2.59
4954 5407 4.065789 CAAGGGAGAAAGTTGGTGTCTAC 58.934 47.826 0.00 0.00 0.00 2.59
4955 5408 9.958234 TTTCAAGGGAGAAAGTTGGTGTCTACC 62.958 44.444 0.00 0.00 42.07 3.18
4956 5409 2.290134 GGGAGAAAGTTGGTGTCTACCC 60.290 54.545 0.00 0.00 46.96 3.69
4957 5410 2.290134 GGAGAAAGTTGGTGTCTACCCC 60.290 54.545 0.00 0.00 46.96 4.95
4958 5411 1.703513 AGAAAGTTGGTGTCTACCCCC 59.296 52.381 0.00 0.00 46.96 5.40
4959 5412 1.422402 GAAAGTTGGTGTCTACCCCCA 59.578 52.381 0.00 0.00 46.96 4.96
4964 5417 3.856206 AGTTGGTGTCTACCCCCATAATT 59.144 43.478 0.00 0.00 46.96 1.40
4967 5420 2.092103 GGTGTCTACCCCCATAATTGCA 60.092 50.000 0.00 0.00 41.36 4.08
4979 5432 7.108847 CCCCCATAATTGCACTTCAAAATTAA 58.891 34.615 0.00 0.00 38.34 1.40
5046 5500 5.199024 TGCTACAACAATCAAACATTGCT 57.801 34.783 0.00 0.00 32.55 3.91
5053 5507 6.588756 ACAACAATCAAACATTGCTGATGATC 59.411 34.615 7.50 0.00 39.15 2.92
5068 5522 2.772568 TGATCGCAACAACACAAAGG 57.227 45.000 0.00 0.00 0.00 3.11
5069 5523 2.020720 TGATCGCAACAACACAAAGGT 58.979 42.857 0.00 0.00 0.00 3.50
5070 5524 2.032799 TGATCGCAACAACACAAAGGTC 59.967 45.455 0.00 0.00 0.00 3.85
5071 5525 1.745232 TCGCAACAACACAAAGGTCT 58.255 45.000 0.00 0.00 0.00 3.85
5072 5526 1.668751 TCGCAACAACACAAAGGTCTC 59.331 47.619 0.00 0.00 0.00 3.36
5073 5527 1.400142 CGCAACAACACAAAGGTCTCA 59.600 47.619 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 21 5.390567 CGTCTTAGTTTTTGCTACCACCATC 60.391 44.000 0.00 0.00 0.00 3.51
21 23 3.810941 CGTCTTAGTTTTTGCTACCACCA 59.189 43.478 0.00 0.00 0.00 4.17
50 52 6.520272 TGTTACCATGGTCTTTGATTTTTGG 58.480 36.000 23.76 0.00 0.00 3.28
85 87 9.393512 ACTAGATTCATCTTTTTCTGGAATCAG 57.606 33.333 13.26 10.79 43.81 2.90
118 125 4.912187 GCAGTCCGTCTTTTGATTTCTTTC 59.088 41.667 0.00 0.00 0.00 2.62
160 167 6.237808 CCAATAATTTGCTACCATCGTTTTGC 60.238 38.462 0.00 0.00 0.00 3.68
181 188 3.488778 TTTTGCTGCAACCATTCCAAT 57.511 38.095 15.72 0.00 0.00 3.16
218 225 5.271598 TCCACAAATTTTGCTAGGATCCAT 58.728 37.500 15.82 1.47 0.00 3.41
234 243 1.340889 GCTGCAACCAAGATCCACAAA 59.659 47.619 0.00 0.00 0.00 2.83
272 281 4.218722 CGGCACCGGAAAAGCTAT 57.781 55.556 9.46 0.00 35.56 2.97
343 359 0.318107 TCGACGAGGTTGGACGTTTC 60.318 55.000 0.00 0.00 42.74 2.78
371 393 4.593864 GGCCGTCCATCTCCTCGC 62.594 72.222 0.00 0.00 0.00 5.03
416 439 1.565305 GCTGATGCAAGGAGTACTCG 58.435 55.000 16.56 4.43 39.41 4.18
487 510 4.048470 GCTCCCCGCCTCCCTTTT 62.048 66.667 0.00 0.00 0.00 2.27
559 592 1.074084 TCTCATCCCCTACCTCTAGCG 59.926 57.143 0.00 0.00 0.00 4.26
591 624 2.742372 CCTTTGCCCGTCCACTCG 60.742 66.667 0.00 0.00 0.00 4.18
619 662 3.237741 GCTCCCCATCCCTCTCGG 61.238 72.222 0.00 0.00 0.00 4.63
669 712 2.282745 GCCAGAAGCCCACTTGCT 60.283 61.111 0.00 0.00 45.43 3.91
694 737 4.394712 GTCTCGCTGGGTGTGGGG 62.395 72.222 0.00 0.00 0.00 4.96
695 738 4.394712 GGTCTCGCTGGGTGTGGG 62.395 72.222 0.00 0.00 0.00 4.61
696 739 4.394712 GGGTCTCGCTGGGTGTGG 62.395 72.222 0.00 0.00 0.00 4.17
697 740 4.742201 CGGGTCTCGCTGGGTGTG 62.742 72.222 0.00 0.00 0.00 3.82
707 750 3.901797 CTGTGGGTTGGCGGGTCTC 62.902 68.421 0.00 0.00 0.00 3.36
708 751 3.953775 CTGTGGGTTGGCGGGTCT 61.954 66.667 0.00 0.00 0.00 3.85
712 755 3.545124 TACAGCTGTGGGTTGGCGG 62.545 63.158 29.57 0.00 0.00 6.13
713 756 2.031919 TACAGCTGTGGGTTGGCG 59.968 61.111 29.57 0.00 0.00 5.69
714 757 2.335712 GCTACAGCTGTGGGTTGGC 61.336 63.158 29.57 17.59 38.21 4.52
715 758 0.322816 ATGCTACAGCTGTGGGTTGG 60.323 55.000 29.57 12.36 42.66 3.77
716 759 1.089920 GATGCTACAGCTGTGGGTTG 58.910 55.000 29.57 14.06 42.66 3.77
717 760 0.692476 TGATGCTACAGCTGTGGGTT 59.308 50.000 29.57 11.52 42.66 4.11
718 761 0.692476 TTGATGCTACAGCTGTGGGT 59.308 50.000 29.57 12.24 42.66 4.51
719 762 1.945394 GATTGATGCTACAGCTGTGGG 59.055 52.381 29.57 21.07 42.66 4.61
720 763 2.635714 TGATTGATGCTACAGCTGTGG 58.364 47.619 29.57 27.03 42.66 4.17
721 764 4.261072 GGATTGATTGATGCTACAGCTGTG 60.261 45.833 29.57 18.99 42.66 3.66
722 765 3.881688 GGATTGATTGATGCTACAGCTGT 59.118 43.478 25.12 25.12 42.66 4.40
723 766 3.059120 CGGATTGATTGATGCTACAGCTG 60.059 47.826 13.48 13.48 42.66 4.24
724 767 3.136763 CGGATTGATTGATGCTACAGCT 58.863 45.455 2.44 0.00 42.66 4.24
725 768 2.874701 ACGGATTGATTGATGCTACAGC 59.125 45.455 0.00 0.00 42.50 4.40
726 769 3.496130 GGACGGATTGATTGATGCTACAG 59.504 47.826 0.00 0.00 0.00 2.74
727 770 3.134623 AGGACGGATTGATTGATGCTACA 59.865 43.478 0.00 0.00 0.00 2.74
728 771 3.733337 AGGACGGATTGATTGATGCTAC 58.267 45.455 0.00 0.00 0.00 3.58
729 772 3.552890 CGAGGACGGATTGATTGATGCTA 60.553 47.826 0.00 0.00 35.72 3.49
730 773 2.804572 CGAGGACGGATTGATTGATGCT 60.805 50.000 0.00 0.00 35.72 3.79
731 774 1.528586 CGAGGACGGATTGATTGATGC 59.471 52.381 0.00 0.00 35.72 3.91
732 775 1.528586 GCGAGGACGGATTGATTGATG 59.471 52.381 0.00 0.00 40.15 3.07
733 776 1.414181 AGCGAGGACGGATTGATTGAT 59.586 47.619 0.00 0.00 40.15 2.57
734 777 0.824109 AGCGAGGACGGATTGATTGA 59.176 50.000 0.00 0.00 40.15 2.57
735 778 1.212616 GAGCGAGGACGGATTGATTG 58.787 55.000 0.00 0.00 40.15 2.67
736 779 0.249073 CGAGCGAGGACGGATTGATT 60.249 55.000 0.00 0.00 40.15 2.57
737 780 1.360551 CGAGCGAGGACGGATTGAT 59.639 57.895 0.00 0.00 40.15 2.57
738 781 2.798689 CGAGCGAGGACGGATTGA 59.201 61.111 0.00 0.00 40.15 2.57
739 782 2.956964 GCGAGCGAGGACGGATTG 60.957 66.667 0.00 0.00 40.15 2.67
740 783 3.127352 GAGCGAGCGAGGACGGATT 62.127 63.158 0.00 0.00 40.15 3.01
741 784 3.587933 GAGCGAGCGAGGACGGAT 61.588 66.667 0.00 0.00 40.15 4.18
756 799 3.716006 CCAATATGGCCGCGCGAG 61.716 66.667 34.63 22.41 0.00 5.03
757 800 3.741830 TTCCAATATGGCCGCGCGA 62.742 57.895 34.63 12.79 37.47 5.87
758 801 2.829206 TTTCCAATATGGCCGCGCG 61.829 57.895 25.67 25.67 37.47 6.86
759 802 1.299089 GTTTCCAATATGGCCGCGC 60.299 57.895 0.00 0.00 37.47 6.86
760 803 0.307760 GAGTTTCCAATATGGCCGCG 59.692 55.000 0.00 0.00 37.47 6.46
761 804 0.307760 CGAGTTTCCAATATGGCCGC 59.692 55.000 0.00 0.00 37.47 6.53
762 805 1.663695 ACGAGTTTCCAATATGGCCG 58.336 50.000 0.00 0.00 37.47 6.13
763 806 3.692791 GAACGAGTTTCCAATATGGCC 57.307 47.619 0.00 0.00 37.47 5.36
790 833 2.101233 GCGAAGAAGAGCCGGGAAC 61.101 63.158 2.18 0.00 0.00 3.62
791 834 2.264794 GCGAAGAAGAGCCGGGAA 59.735 61.111 2.18 0.00 0.00 3.97
792 835 2.994995 TGCGAAGAAGAGCCGGGA 60.995 61.111 2.18 0.00 0.00 5.14
793 836 2.815647 GTGCGAAGAAGAGCCGGG 60.816 66.667 2.18 0.00 0.00 5.73
794 837 3.181967 CGTGCGAAGAAGAGCCGG 61.182 66.667 0.00 0.00 0.00 6.13
795 838 2.430921 ACGTGCGAAGAAGAGCCG 60.431 61.111 0.00 0.00 34.76 5.52
796 839 2.383527 CCACGTGCGAAGAAGAGCC 61.384 63.158 10.91 0.00 0.00 4.70
797 840 1.664965 ACCACGTGCGAAGAAGAGC 60.665 57.895 10.91 0.00 0.00 4.09
798 841 1.284982 CCACCACGTGCGAAGAAGAG 61.285 60.000 10.91 0.00 31.34 2.85
799 842 1.300620 CCACCACGTGCGAAGAAGA 60.301 57.895 10.91 0.00 31.34 2.87
800 843 0.319211 TACCACCACGTGCGAAGAAG 60.319 55.000 10.91 0.00 31.34 2.85
801 844 0.598158 GTACCACCACGTGCGAAGAA 60.598 55.000 10.91 0.00 31.34 2.52
802 845 1.007038 GTACCACCACGTGCGAAGA 60.007 57.895 10.91 0.00 31.34 2.87
803 846 2.369629 CGTACCACCACGTGCGAAG 61.370 63.158 10.91 0.00 43.47 3.79
804 847 2.354891 CGTACCACCACGTGCGAA 60.355 61.111 10.91 0.00 43.47 4.70
805 848 4.345962 CCGTACCACCACGTGCGA 62.346 66.667 10.91 0.00 43.47 5.10
813 856 3.931190 CTTTGGGGCCCGTACCACC 62.931 68.421 19.83 0.00 36.27 4.61
814 857 2.360726 CTTTGGGGCCCGTACCAC 60.361 66.667 19.83 0.00 36.27 4.16
815 858 4.354162 GCTTTGGGGCCCGTACCA 62.354 66.667 19.83 4.72 34.29 3.25
816 859 2.604299 CTAGCTTTGGGGCCCGTACC 62.604 65.000 19.83 6.53 0.00 3.34
817 860 1.153229 CTAGCTTTGGGGCCCGTAC 60.153 63.158 19.83 7.37 0.00 3.67
818 861 3.038945 GCTAGCTTTGGGGCCCGTA 62.039 63.158 19.83 5.43 0.00 4.02
819 862 4.426313 GCTAGCTTTGGGGCCCGT 62.426 66.667 19.83 2.01 0.00 5.28
820 863 4.115199 AGCTAGCTTTGGGGCCCG 62.115 66.667 19.83 4.57 0.00 6.13
821 864 2.440980 CAGCTAGCTTTGGGGCCC 60.441 66.667 18.17 18.17 0.00 5.80
822 865 1.000896 TTCAGCTAGCTTTGGGGCC 60.001 57.895 16.46 0.00 0.00 5.80
823 866 1.661498 GCTTCAGCTAGCTTTGGGGC 61.661 60.000 16.46 11.39 38.15 5.80
824 867 1.034292 GGCTTCAGCTAGCTTTGGGG 61.034 60.000 16.46 3.22 40.99 4.96
825 868 1.034292 GGGCTTCAGCTAGCTTTGGG 61.034 60.000 16.46 3.65 40.99 4.12
826 869 0.322816 TGGGCTTCAGCTAGCTTTGG 60.323 55.000 16.46 8.79 40.99 3.28
827 870 1.404391 CATGGGCTTCAGCTAGCTTTG 59.596 52.381 16.46 6.00 40.99 2.77
828 871 1.684248 CCATGGGCTTCAGCTAGCTTT 60.684 52.381 16.46 0.00 40.99 3.51
829 872 0.106819 CCATGGGCTTCAGCTAGCTT 60.107 55.000 16.46 0.00 40.99 3.74
830 873 1.530771 CCATGGGCTTCAGCTAGCT 59.469 57.895 12.68 12.68 40.99 3.32
831 874 1.527844 CCCATGGGCTTCAGCTAGC 60.528 63.158 20.41 6.62 41.70 3.42
832 875 4.894201 CCCATGGGCTTCAGCTAG 57.106 61.111 20.41 0.00 41.70 3.42
849 892 0.540597 GAAGGATATGGGCTTGGGGC 60.541 60.000 0.00 0.00 40.90 5.80
850 893 0.852842 TGAAGGATATGGGCTTGGGG 59.147 55.000 0.00 0.00 0.00 4.96
851 894 1.820877 GCTGAAGGATATGGGCTTGGG 60.821 57.143 0.00 0.00 0.00 4.12
852 895 1.144503 AGCTGAAGGATATGGGCTTGG 59.855 52.381 0.00 0.00 0.00 3.61
853 896 2.653234 AGCTGAAGGATATGGGCTTG 57.347 50.000 0.00 0.00 0.00 4.01
854 897 2.373502 GGTAGCTGAAGGATATGGGCTT 59.626 50.000 0.00 0.00 0.00 4.35
855 898 1.981495 GGTAGCTGAAGGATATGGGCT 59.019 52.381 0.00 0.00 0.00 5.19
856 899 1.699634 TGGTAGCTGAAGGATATGGGC 59.300 52.381 0.00 0.00 0.00 5.36
857 900 3.808618 GCTTGGTAGCTGAAGGATATGGG 60.809 52.174 0.00 0.00 44.27 4.00
858 901 3.406764 GCTTGGTAGCTGAAGGATATGG 58.593 50.000 0.00 0.00 44.27 2.74
871 914 3.650139 ACAGTACGTTCTTGCTTGGTAG 58.350 45.455 0.00 0.00 0.00 3.18
872 915 3.738830 ACAGTACGTTCTTGCTTGGTA 57.261 42.857 0.00 0.00 0.00 3.25
873 916 2.614829 ACAGTACGTTCTTGCTTGGT 57.385 45.000 0.00 0.00 0.00 3.67
874 917 3.805422 TGTTACAGTACGTTCTTGCTTGG 59.195 43.478 0.00 0.00 0.00 3.61
875 918 4.608445 GCTGTTACAGTACGTTCTTGCTTG 60.608 45.833 14.23 0.00 33.43 4.01
876 919 3.493503 GCTGTTACAGTACGTTCTTGCTT 59.506 43.478 14.23 0.00 33.43 3.91
877 920 3.057734 GCTGTTACAGTACGTTCTTGCT 58.942 45.455 14.23 0.00 33.43 3.91
878 921 2.157085 GGCTGTTACAGTACGTTCTTGC 59.843 50.000 14.23 0.00 33.43 4.01
879 922 3.650139 AGGCTGTTACAGTACGTTCTTG 58.350 45.455 14.23 0.00 33.43 3.02
880 923 4.279169 TGTAGGCTGTTACAGTACGTTCTT 59.721 41.667 14.23 0.00 33.43 2.52
881 924 3.822735 TGTAGGCTGTTACAGTACGTTCT 59.177 43.478 14.23 0.00 33.43 3.01
882 925 4.083110 TCTGTAGGCTGTTACAGTACGTTC 60.083 45.833 14.23 0.00 46.75 3.95
883 926 3.822735 TCTGTAGGCTGTTACAGTACGTT 59.177 43.478 14.23 0.00 46.75 3.99
884 927 3.190118 GTCTGTAGGCTGTTACAGTACGT 59.810 47.826 14.23 0.00 46.75 3.57
885 928 3.427233 GGTCTGTAGGCTGTTACAGTACG 60.427 52.174 14.23 6.48 46.75 3.67
886 929 3.427233 CGGTCTGTAGGCTGTTACAGTAC 60.427 52.174 14.23 9.75 46.75 2.73
887 930 2.751259 CGGTCTGTAGGCTGTTACAGTA 59.249 50.000 14.23 0.00 46.75 2.74
888 931 1.544691 CGGTCTGTAGGCTGTTACAGT 59.455 52.381 14.23 0.00 46.75 3.55
890 933 1.816835 CTCGGTCTGTAGGCTGTTACA 59.183 52.381 0.00 0.00 32.86 2.41
891 934 1.817447 ACTCGGTCTGTAGGCTGTTAC 59.183 52.381 0.00 0.00 0.00 2.50
892 935 1.816835 CACTCGGTCTGTAGGCTGTTA 59.183 52.381 0.00 0.00 0.00 2.41
893 936 0.603569 CACTCGGTCTGTAGGCTGTT 59.396 55.000 0.00 0.00 0.00 3.16
894 937 1.878656 GCACTCGGTCTGTAGGCTGT 61.879 60.000 0.00 0.00 0.00 4.40
895 938 1.153745 GCACTCGGTCTGTAGGCTG 60.154 63.158 0.00 0.00 0.00 4.85
896 939 2.701780 CGCACTCGGTCTGTAGGCT 61.702 63.158 0.00 0.00 0.00 4.58
897 940 2.202623 CGCACTCGGTCTGTAGGC 60.203 66.667 0.00 0.00 0.00 3.93
928 971 4.054455 CAACGACGAACGCGGTGG 62.054 66.667 12.47 8.22 46.94 4.61
929 972 4.054455 CCAACGACGAACGCGGTG 62.054 66.667 12.47 16.82 45.45 4.94
930 973 4.268939 TCCAACGACGAACGCGGT 62.269 61.111 12.47 1.91 46.94 5.68
931 974 3.759828 GTCCAACGACGAACGCGG 61.760 66.667 12.47 0.00 46.94 6.46
932 975 2.461002 CTTGTCCAACGACGAACGCG 62.461 60.000 3.53 3.53 46.94 6.01
933 976 1.200839 CTTGTCCAACGACGAACGC 59.799 57.895 0.00 0.00 46.94 4.84
935 978 0.507358 GAGCTTGTCCAACGACGAAC 59.493 55.000 0.00 0.00 42.37 3.95
936 979 0.599204 GGAGCTTGTCCAACGACGAA 60.599 55.000 0.00 0.00 46.10 3.85
937 980 1.006571 GGAGCTTGTCCAACGACGA 60.007 57.895 0.00 0.00 46.10 4.20
938 981 3.550656 GGAGCTTGTCCAACGACG 58.449 61.111 0.00 0.00 46.10 5.12
965 1008 4.521062 CTCCTTGCTCGGGCTCGG 62.521 72.222 9.62 9.17 39.59 4.63
966 1009 3.423162 CTCTCCTTGCTCGGGCTCG 62.423 68.421 9.62 0.00 39.59 5.03
967 1010 2.498726 CTCTCCTTGCTCGGGCTC 59.501 66.667 9.62 0.00 39.59 4.70
968 1011 3.780173 GCTCTCCTTGCTCGGGCT 61.780 66.667 9.62 0.00 39.59 5.19
969 1012 4.087892 TGCTCTCCTTGCTCGGGC 62.088 66.667 0.00 0.00 39.26 6.13
970 1013 2.186384 CTGCTCTCCTTGCTCGGG 59.814 66.667 0.00 0.00 0.00 5.14
971 1014 2.186384 CCTGCTCTCCTTGCTCGG 59.814 66.667 0.00 0.00 0.00 4.63
972 1015 2.511145 GCCTGCTCTCCTTGCTCG 60.511 66.667 0.00 0.00 0.00 5.03
973 1016 2.511145 CGCCTGCTCTCCTTGCTC 60.511 66.667 0.00 0.00 0.00 4.26
974 1017 4.093291 CCGCCTGCTCTCCTTGCT 62.093 66.667 0.00 0.00 0.00 3.91
990 1033 4.148825 ACCGTCATCTCGCTGGCC 62.149 66.667 0.00 0.00 0.00 5.36
1143 1186 3.873812 GATGGGTAGGGCGGGGTG 61.874 72.222 0.00 0.00 0.00 4.61
1144 1187 4.103928 AGATGGGTAGGGCGGGGT 62.104 66.667 0.00 0.00 0.00 4.95
1145 1188 3.560251 CAGATGGGTAGGGCGGGG 61.560 72.222 0.00 0.00 0.00 5.73
1146 1189 4.256180 GCAGATGGGTAGGGCGGG 62.256 72.222 0.00 0.00 0.00 6.13
1149 1192 4.937431 GCGGCAGATGGGTAGGGC 62.937 72.222 0.00 0.00 0.00 5.19
1154 1197 4.552365 CGGATGCGGCAGATGGGT 62.552 66.667 9.25 0.00 0.00 4.51
1167 1324 1.865865 CGGATTCGATGGAAACGGAT 58.134 50.000 9.13 0.00 30.66 4.18
1170 1327 1.209128 CTCCGGATTCGATGGAAACG 58.791 55.000 3.57 9.78 39.00 3.60
1172 1329 0.468226 CCCTCCGGATTCGATGGAAA 59.532 55.000 3.57 0.00 39.00 3.13
1186 1343 4.493747 CGAGAACCGCGTCCCTCC 62.494 72.222 4.92 0.00 0.00 4.30
1191 1348 3.479269 CAAGCCGAGAACCGCGTC 61.479 66.667 4.92 0.00 36.84 5.19
1234 1391 2.438434 CACGGCCACAGGAATCCC 60.438 66.667 2.24 0.00 0.00 3.85
1235 1392 2.438434 CCACGGCCACAGGAATCC 60.438 66.667 2.24 0.00 0.00 3.01
1304 1495 1.880340 GGATCTCACGAAGCCGCAG 60.880 63.158 0.00 0.00 39.95 5.18
1339 1536 2.159448 TGAAACCAAACTGTCTGCAACG 60.159 45.455 0.00 0.00 0.00 4.10
1344 1541 2.605338 CGCCATGAAACCAAACTGTCTG 60.605 50.000 0.00 0.00 0.00 3.51
1350 1547 1.732683 CCGCGCCATGAAACCAAAC 60.733 57.895 0.00 0.00 0.00 2.93
1354 1553 4.160635 CGTCCGCGCCATGAAACC 62.161 66.667 0.00 0.00 0.00 3.27
1372 1571 0.392998 CCAGATCCACGGTCCCAAAG 60.393 60.000 0.00 0.00 0.00 2.77
1378 1577 1.078426 CCCAACCAGATCCACGGTC 60.078 63.158 0.00 0.00 33.17 4.79
1381 1580 0.960364 CCAACCCAACCAGATCCACG 60.960 60.000 0.00 0.00 0.00 4.94
1403 1629 1.284982 CTGTGGGTTCGACAAGCTCG 61.285 60.000 0.00 0.00 44.44 5.03
1421 1647 8.986929 ATAAGAATGCAAGTTAAATCCTAGCT 57.013 30.769 0.00 0.00 0.00 3.32
1422 1648 8.293157 GGATAAGAATGCAAGTTAAATCCTAGC 58.707 37.037 0.00 0.00 0.00 3.42
1423 1649 9.566432 AGGATAAGAATGCAAGTTAAATCCTAG 57.434 33.333 14.62 0.00 39.07 3.02
1464 1716 2.200067 GGTGCTGAGAATCGAGACATG 58.800 52.381 0.00 0.00 38.61 3.21
1466 1718 1.256812 TGGTGCTGAGAATCGAGACA 58.743 50.000 0.00 0.00 38.61 3.41
1467 1719 2.593346 ATGGTGCTGAGAATCGAGAC 57.407 50.000 0.00 0.00 38.61 3.36
1471 1723 3.987547 AGTGATATGGTGCTGAGAATCG 58.012 45.455 0.00 0.00 38.61 3.34
1490 1742 3.374745 CAAACGACACTAACACGGTAGT 58.625 45.455 0.00 0.00 34.56 2.73
1491 1743 2.727798 CCAAACGACACTAACACGGTAG 59.272 50.000 0.00 0.00 0.00 3.18
1493 1745 1.136695 TCCAAACGACACTAACACGGT 59.863 47.619 0.00 0.00 0.00 4.83
1496 1748 2.798847 GAGGTCCAAACGACACTAACAC 59.201 50.000 0.00 0.00 43.95 3.32
1500 1752 0.038892 GCGAGGTCCAAACGACACTA 60.039 55.000 7.19 0.00 43.95 2.74
1501 1753 1.300697 GCGAGGTCCAAACGACACT 60.301 57.895 7.19 0.00 43.95 3.55
1502 1754 1.282930 GAGCGAGGTCCAAACGACAC 61.283 60.000 7.19 0.00 43.95 3.67
1518 1791 2.263945 GGAGTTTCAGAAGTAGCGAGC 58.736 52.381 0.00 0.00 0.00 5.03
1526 1799 0.035458 ACCCGCTGGAGTTTCAGAAG 59.965 55.000 0.00 0.00 36.93 2.85
1530 1803 1.271163 CCTAAACCCGCTGGAGTTTCA 60.271 52.381 0.00 0.00 37.39 2.69
1537 1810 0.323629 TCACTTCCTAAACCCGCTGG 59.676 55.000 0.00 0.00 37.80 4.85
1541 1814 2.280628 GCTCATCACTTCCTAAACCCG 58.719 52.381 0.00 0.00 0.00 5.28
1542 1815 3.274288 CTGCTCATCACTTCCTAAACCC 58.726 50.000 0.00 0.00 0.00 4.11
1544 1817 3.935828 GGACTGCTCATCACTTCCTAAAC 59.064 47.826 0.00 0.00 0.00 2.01
1554 1827 3.102972 AGCTAGAAAGGACTGCTCATCA 58.897 45.455 0.00 0.00 0.00 3.07
1565 1838 2.678190 GCCTACACCACAGCTAGAAAGG 60.678 54.545 0.00 0.00 0.00 3.11
1570 1843 0.898320 ACAGCCTACACCACAGCTAG 59.102 55.000 0.00 0.00 33.33 3.42
1592 1865 7.067859 AGGACCATTTATCATCATTCACAGTTG 59.932 37.037 0.00 0.00 0.00 3.16
1634 1920 7.402640 GCTTCGACTAGAAAAATCACCTATTG 58.597 38.462 0.00 0.00 38.57 1.90
1635 1921 6.255887 CGCTTCGACTAGAAAAATCACCTATT 59.744 38.462 0.00 0.00 38.57 1.73
1636 1922 5.749109 CGCTTCGACTAGAAAAATCACCTAT 59.251 40.000 0.00 0.00 38.57 2.57
1637 1923 5.100259 CGCTTCGACTAGAAAAATCACCTA 58.900 41.667 0.00 0.00 38.57 3.08
1639 1925 3.924686 TCGCTTCGACTAGAAAAATCACC 59.075 43.478 0.00 0.00 38.57 4.02
1640 1926 5.511088 TTCGCTTCGACTAGAAAAATCAC 57.489 39.130 0.00 0.00 38.57 3.06
1641 1927 6.721571 ATTTCGCTTCGACTAGAAAAATCA 57.278 33.333 10.92 0.00 38.57 2.57
1642 1928 7.234384 TGAATTTCGCTTCGACTAGAAAAATC 58.766 34.615 10.92 11.89 38.57 2.17
1643 1929 7.095187 ACTGAATTTCGCTTCGACTAGAAAAAT 60.095 33.333 10.92 5.32 38.57 1.82
1644 1930 6.202188 ACTGAATTTCGCTTCGACTAGAAAAA 59.798 34.615 10.92 1.34 38.57 1.94
1671 1957 3.402110 CACAGAGGTACAATCAGCACAA 58.598 45.455 0.00 0.00 0.00 3.33
1673 1959 2.350522 CCACAGAGGTACAATCAGCAC 58.649 52.381 0.00 0.00 0.00 4.40
1678 1964 2.093447 CAGTCCCCACAGAGGTACAATC 60.093 54.545 0.00 0.00 34.66 2.67
1680 1966 1.132977 TCAGTCCCCACAGAGGTACAA 60.133 52.381 0.00 0.00 34.66 2.41
1741 2034 5.327732 ACACCATGGAAAAGATGACTGAAT 58.672 37.500 21.47 0.00 0.00 2.57
1760 2053 4.513442 TCATAGTCACAAAGCCATACACC 58.487 43.478 0.00 0.00 0.00 4.16
1771 2064 3.394674 TGGAAACGCTCATAGTCACAA 57.605 42.857 0.00 0.00 0.00 3.33
1774 2067 3.937814 ACAATGGAAACGCTCATAGTCA 58.062 40.909 0.00 0.00 0.00 3.41
1776 2069 5.991328 CATACAATGGAAACGCTCATAGT 57.009 39.130 0.00 0.00 0.00 2.12
1790 2083 5.310409 ACTAAGATCCCACCCATACAATG 57.690 43.478 0.00 0.00 0.00 2.82
1791 2084 6.151049 AGTACTAAGATCCCACCCATACAAT 58.849 40.000 0.00 0.00 0.00 2.71
1794 2087 6.313324 AGTAGTACTAAGATCCCACCCATAC 58.687 44.000 3.61 0.00 0.00 2.39
1800 2093 5.532032 GTCCAGAGTAGTACTAAGATCCCAC 59.468 48.000 3.61 0.00 0.00 4.61
1801 2094 5.193124 TGTCCAGAGTAGTACTAAGATCCCA 59.807 44.000 3.61 0.00 0.00 4.37
1802 2095 5.692928 TGTCCAGAGTAGTACTAAGATCCC 58.307 45.833 3.61 0.00 0.00 3.85
1807 2100 5.991861 TCTCCTGTCCAGAGTAGTACTAAG 58.008 45.833 3.61 0.00 0.00 2.18
1812 2105 6.971340 AGTTATTCTCCTGTCCAGAGTAGTA 58.029 40.000 0.00 0.00 0.00 1.82
1819 2112 4.154918 GCACAAAGTTATTCTCCTGTCCAG 59.845 45.833 0.00 0.00 0.00 3.86
1833 2126 2.374184 TGCCAGTTACAGCACAAAGTT 58.626 42.857 0.00 0.00 33.08 2.66
1858 2151 6.097356 CAGAATTCACACAGGAATGGAAATG 58.903 40.000 8.44 0.00 37.55 2.32
1859 2152 5.776716 ACAGAATTCACACAGGAATGGAAAT 59.223 36.000 8.44 0.00 37.55 2.17
1864 2157 4.520111 TGGAACAGAATTCACACAGGAATG 59.480 41.667 8.44 0.00 37.55 2.67
1882 2175 0.039618 TGGGAGCCTTGGAATGGAAC 59.960 55.000 0.00 0.00 31.60 3.62
1883 2176 1.009997 ATGGGAGCCTTGGAATGGAA 58.990 50.000 0.00 0.00 31.60 3.53
1884 2177 0.552848 GATGGGAGCCTTGGAATGGA 59.447 55.000 0.00 0.00 31.60 3.41
1885 2178 0.554792 AGATGGGAGCCTTGGAATGG 59.445 55.000 0.00 0.00 0.00 3.16
1886 2179 1.064166 ACAGATGGGAGCCTTGGAATG 60.064 52.381 0.00 0.00 0.00 2.67
1887 2180 1.302907 ACAGATGGGAGCCTTGGAAT 58.697 50.000 0.00 0.00 0.00 3.01
1888 2181 1.075601 AACAGATGGGAGCCTTGGAA 58.924 50.000 0.00 0.00 0.00 3.53
1889 2182 1.075601 AAACAGATGGGAGCCTTGGA 58.924 50.000 0.00 0.00 0.00 3.53
1890 2183 2.806945 TAAACAGATGGGAGCCTTGG 57.193 50.000 0.00 0.00 0.00 3.61
1891 2184 4.463891 ACAAATAAACAGATGGGAGCCTTG 59.536 41.667 0.00 0.00 0.00 3.61
1892 2185 4.463891 CACAAATAAACAGATGGGAGCCTT 59.536 41.667 0.00 0.00 0.00 4.35
1893 2186 4.019174 CACAAATAAACAGATGGGAGCCT 58.981 43.478 0.00 0.00 0.00 4.58
1894 2187 3.763897 ACACAAATAAACAGATGGGAGCC 59.236 43.478 0.00 0.00 0.00 4.70
1895 2188 5.391312 AACACAAATAAACAGATGGGAGC 57.609 39.130 0.00 0.00 0.00 4.70
1896 2189 5.391950 CGGAACACAAATAAACAGATGGGAG 60.392 44.000 0.00 0.00 0.00 4.30
1897 2190 4.457603 CGGAACACAAATAAACAGATGGGA 59.542 41.667 0.00 0.00 0.00 4.37
1898 2191 4.380444 CCGGAACACAAATAAACAGATGGG 60.380 45.833 0.00 0.00 0.00 4.00
1899 2192 4.457603 TCCGGAACACAAATAAACAGATGG 59.542 41.667 0.00 0.00 0.00 3.51
1900 2193 5.411361 TCTCCGGAACACAAATAAACAGATG 59.589 40.000 5.23 0.00 0.00 2.90
1901 2194 5.556915 TCTCCGGAACACAAATAAACAGAT 58.443 37.500 5.23 0.00 0.00 2.90
1902 2195 4.963373 TCTCCGGAACACAAATAAACAGA 58.037 39.130 5.23 0.00 0.00 3.41
1903 2196 5.880054 ATCTCCGGAACACAAATAAACAG 57.120 39.130 5.23 0.00 0.00 3.16
1907 2200 5.432645 TGCATATCTCCGGAACACAAATAA 58.567 37.500 5.23 0.00 0.00 1.40
1915 2208 3.321497 GTGATCTGCATATCTCCGGAAC 58.679 50.000 5.23 0.00 0.00 3.62
1920 2213 2.029560 TCTGCGTGATCTGCATATCTCC 60.030 50.000 12.72 3.64 42.32 3.71
1921 2214 3.244156 CTCTGCGTGATCTGCATATCTC 58.756 50.000 12.72 8.51 42.32 2.75
1943 2236 1.064783 GGTGGTACTACGCCGCTAC 59.935 63.158 3.03 0.00 36.77 3.58
1971 2264 3.627395 TGCAGGTGGTCAGGTTAATAG 57.373 47.619 0.00 0.00 0.00 1.73
1986 2279 7.441157 AGCAAAATATCATGAATCAATTGCAGG 59.559 33.333 25.15 0.00 42.14 4.85
2001 2294 2.942376 CGGTAGGCACAGCAAAATATCA 59.058 45.455 0.00 0.00 0.00 2.15
2018 2311 6.707608 TGCGTATTCTAGATCTAAAGACGGTA 59.292 38.462 26.88 15.41 0.00 4.02
2019 2312 5.530171 TGCGTATTCTAGATCTAAAGACGGT 59.470 40.000 26.88 10.61 0.00 4.83
2020 2313 5.998553 TGCGTATTCTAGATCTAAAGACGG 58.001 41.667 26.88 17.53 0.00 4.79
2032 2325 7.997107 TGTACCAAGTATTTGCGTATTCTAG 57.003 36.000 0.00 0.00 32.79 2.43
2041 2334 3.443681 ACCAGCATGTACCAAGTATTTGC 59.556 43.478 0.00 4.59 32.67 3.68
2046 2339 3.407698 CAACACCAGCATGTACCAAGTA 58.592 45.455 0.00 0.00 30.75 2.24
2086 2379 2.744741 GCCTTAGGTTTCTCACTGAAGC 59.255 50.000 0.00 0.00 35.89 3.86
2168 2461 6.094193 TGCTCTGACTGATTATGTCATAGG 57.906 41.667 9.95 1.28 42.57 2.57
2180 2473 2.481969 GCCGTTGATATGCTCTGACTGA 60.482 50.000 0.00 0.00 0.00 3.41
2181 2474 1.863454 GCCGTTGATATGCTCTGACTG 59.137 52.381 0.00 0.00 0.00 3.51
2182 2475 1.202580 GGCCGTTGATATGCTCTGACT 60.203 52.381 0.00 0.00 0.00 3.41
2183 2476 1.202580 AGGCCGTTGATATGCTCTGAC 60.203 52.381 0.00 0.00 0.00 3.51
2198 2491 5.765182 ACATATTTCCAATCTAGAAAGGCCG 59.235 40.000 0.00 0.00 36.71 6.13
2225 2518 6.296026 TGATACTGTATTTCCATAGGTTGCC 58.704 40.000 1.22 0.00 0.00 4.52
2278 2571 2.998772 ACAACGTGCTGCACAAATAAG 58.001 42.857 29.86 16.03 33.40 1.73
2518 2821 2.238521 TCACCAGGAAAGCAATCAACC 58.761 47.619 0.00 0.00 0.00 3.77
2674 2977 5.944007 GCCTTCCTTGACCTAAGAACATTTA 59.056 40.000 0.00 0.00 38.76 1.40
2685 2988 1.147817 ACATTTGGCCTTCCTTGACCT 59.852 47.619 3.32 0.00 0.00 3.85
2736 3039 5.694006 GGATAAACACTAGCAGCAGTAGATG 59.306 44.000 0.00 0.00 0.00 2.90
2743 3046 2.092968 CCTGGGATAAACACTAGCAGCA 60.093 50.000 0.00 0.00 0.00 4.41
2822 3126 7.059831 CCGCAATTATGATATGAACACAATTCG 59.940 37.037 0.00 0.00 0.00 3.34
2846 3150 3.255642 ACAACAATCACCAGAAAATCCCG 59.744 43.478 0.00 0.00 0.00 5.14
2867 3171 6.116126 ACCTATTGCTAGAGTTGGAATGAAC 58.884 40.000 0.00 0.00 0.00 3.18
2924 3228 8.140628 CCATATATAAGCTGTGATTCGCTCTAT 58.859 37.037 0.00 0.00 34.96 1.98
3295 3599 6.183361 CCATCTAATCAGAAGGCTCCTTTAGT 60.183 42.308 2.27 0.00 33.13 2.24
3296 3600 6.229733 CCATCTAATCAGAAGGCTCCTTTAG 58.770 44.000 2.27 1.02 33.13 1.85
3328 3632 3.737774 CAGAGCTGGCTTAAAAACTTTGC 59.262 43.478 0.00 0.00 0.00 3.68
3345 3649 0.511221 TGCGCTAAAACGAACAGAGC 59.489 50.000 9.73 0.00 35.90 4.09
3416 3720 7.158021 CCAGGAAAATAAAGTTTGGCATACAA 58.842 34.615 10.68 0.00 37.28 2.41
3417 3721 6.268847 ACCAGGAAAATAAAGTTTGGCATACA 59.731 34.615 10.68 0.00 0.00 2.29
3418 3722 6.589907 CACCAGGAAAATAAAGTTTGGCATAC 59.410 38.462 0.00 0.00 0.00 2.39
3419 3723 6.268847 ACACCAGGAAAATAAAGTTTGGCATA 59.731 34.615 0.00 0.00 0.00 3.14
3420 3724 5.071653 ACACCAGGAAAATAAAGTTTGGCAT 59.928 36.000 0.00 0.00 0.00 4.40
3421 3725 4.407296 ACACCAGGAAAATAAAGTTTGGCA 59.593 37.500 0.00 0.00 0.00 4.92
3422 3726 4.956085 ACACCAGGAAAATAAAGTTTGGC 58.044 39.130 0.00 0.00 0.00 4.52
3423 3727 6.345298 ACAACACCAGGAAAATAAAGTTTGG 58.655 36.000 0.00 0.00 0.00 3.28
3424 3728 7.841915 AACAACACCAGGAAAATAAAGTTTG 57.158 32.000 0.00 0.00 0.00 2.93
3425 3729 8.856153 AAAACAACACCAGGAAAATAAAGTTT 57.144 26.923 0.00 0.00 0.00 2.66
3426 3730 7.551262 GGAAAACAACACCAGGAAAATAAAGTT 59.449 33.333 0.00 0.00 0.00 2.66
3427 3731 7.045416 GGAAAACAACACCAGGAAAATAAAGT 58.955 34.615 0.00 0.00 0.00 2.66
3428 3732 7.272244 AGGAAAACAACACCAGGAAAATAAAG 58.728 34.615 0.00 0.00 0.00 1.85
3429 3733 7.189079 AGGAAAACAACACCAGGAAAATAAA 57.811 32.000 0.00 0.00 0.00 1.40
3430 3734 6.800072 AGGAAAACAACACCAGGAAAATAA 57.200 33.333 0.00 0.00 0.00 1.40
3431 3735 6.407525 CCAAGGAAAACAACACCAGGAAAATA 60.408 38.462 0.00 0.00 0.00 1.40
3432 3736 5.427378 CAAGGAAAACAACACCAGGAAAAT 58.573 37.500 0.00 0.00 0.00 1.82
3433 3737 4.323104 CCAAGGAAAACAACACCAGGAAAA 60.323 41.667 0.00 0.00 0.00 2.29
3434 3738 3.196685 CCAAGGAAAACAACACCAGGAAA 59.803 43.478 0.00 0.00 0.00 3.13
3435 3739 2.763448 CCAAGGAAAACAACACCAGGAA 59.237 45.455 0.00 0.00 0.00 3.36
3436 3740 2.383855 CCAAGGAAAACAACACCAGGA 58.616 47.619 0.00 0.00 0.00 3.86
3437 3741 1.202521 GCCAAGGAAAACAACACCAGG 60.203 52.381 0.00 0.00 0.00 4.45
3438 3742 1.756538 AGCCAAGGAAAACAACACCAG 59.243 47.619 0.00 0.00 0.00 4.00
3439 3743 1.859302 AGCCAAGGAAAACAACACCA 58.141 45.000 0.00 0.00 0.00 4.17
3440 3744 4.116961 GTTTAGCCAAGGAAAACAACACC 58.883 43.478 10.72 0.00 34.12 4.16
3441 3745 4.116961 GGTTTAGCCAAGGAAAACAACAC 58.883 43.478 15.10 0.68 35.33 3.32
3442 3746 3.133183 GGGTTTAGCCAAGGAAAACAACA 59.867 43.478 15.10 0.00 39.65 3.33
3443 3747 3.386726 AGGGTTTAGCCAAGGAAAACAAC 59.613 43.478 15.10 9.67 39.65 3.32
3444 3748 3.639561 GAGGGTTTAGCCAAGGAAAACAA 59.360 43.478 15.10 0.00 39.65 2.83
3445 3749 3.117284 AGAGGGTTTAGCCAAGGAAAACA 60.117 43.478 15.10 0.00 39.65 2.83
3446 3750 3.255888 CAGAGGGTTTAGCCAAGGAAAAC 59.744 47.826 0.26 8.26 39.65 2.43
3447 3751 3.117284 ACAGAGGGTTTAGCCAAGGAAAA 60.117 43.478 0.26 0.00 39.65 2.29
3753 4096 0.949105 GTCCGCGGTGTCTCAACAAT 60.949 55.000 27.15 0.00 37.08 2.71
3766 4109 9.498307 AAAAATAAAAAGATATTACTGTCCGCG 57.502 29.630 0.00 0.00 0.00 6.46
3797 4140 5.830991 ACTTGGAAACATAAGTGCTTGGTTA 59.169 36.000 0.00 0.00 42.32 2.85
3805 4148 7.567571 CGATATGCTACTTGGAAACATAAGTG 58.432 38.462 0.00 0.00 42.32 3.16
3816 4159 1.787155 GTCGTGCGATATGCTACTTGG 59.213 52.381 0.00 0.00 46.63 3.61
3829 4172 1.529622 CCAGCATTTACATGTCGTGCG 60.530 52.381 18.46 14.56 40.54 5.34
4185 4534 3.304257 CGCATGGGCTTTCATAAGATGAC 60.304 47.826 0.00 0.00 37.10 3.06
4250 4599 4.397417 ACCGTCTCAGTACAAGTACCATAC 59.603 45.833 6.74 1.05 36.75 2.39
4268 4617 5.892568 ACATCTCATTACAAGTAGACCGTC 58.107 41.667 0.00 0.00 0.00 4.79
4274 4623 7.959651 GCACTGAAAACATCTCATTACAAGTAG 59.040 37.037 0.00 0.00 0.00 2.57
4417 4823 5.183904 GCAAACTATTCACAAACAGGGAGAT 59.816 40.000 0.00 0.00 0.00 2.75
4448 4854 0.447801 GCGGAACATACACAGCAAGG 59.552 55.000 0.00 0.00 0.00 3.61
4449 4855 0.095245 CGCGGAACATACACAGCAAG 59.905 55.000 0.00 0.00 0.00 4.01
4450 4856 1.295357 CCGCGGAACATACACAGCAA 61.295 55.000 24.07 0.00 0.00 3.91
4451 4857 1.739929 CCGCGGAACATACACAGCA 60.740 57.895 24.07 0.00 0.00 4.41
4452 4858 1.740296 ACCGCGGAACATACACAGC 60.740 57.895 35.90 0.00 0.00 4.40
4453 4859 0.669318 ACACCGCGGAACATACACAG 60.669 55.000 35.90 9.91 0.00 3.66
4454 4860 0.249953 AACACCGCGGAACATACACA 60.250 50.000 35.90 0.00 0.00 3.72
4455 4861 0.869730 AAACACCGCGGAACATACAC 59.130 50.000 35.90 0.00 0.00 2.90
4456 4862 1.595466 AAAACACCGCGGAACATACA 58.405 45.000 35.90 0.00 0.00 2.29
4477 4883 4.892934 AGCACAGGGACAACAGAAAAATAA 59.107 37.500 0.00 0.00 0.00 1.40
4478 4884 4.469657 AGCACAGGGACAACAGAAAAATA 58.530 39.130 0.00 0.00 0.00 1.40
4479 4885 3.299503 AGCACAGGGACAACAGAAAAAT 58.700 40.909 0.00 0.00 0.00 1.82
4519 4928 9.416794 CGAGAAATTATAGATAGCTGTGAATGT 57.583 33.333 0.00 0.00 0.00 2.71
4591 5015 3.200825 AGGGAGTACATGGGTTTGAGATG 59.799 47.826 0.00 0.00 0.00 2.90
4657 5109 6.857777 AGGTCTATATATACATCCGTACGC 57.142 41.667 10.49 0.00 0.00 4.42
4742 5195 7.766278 TGAAATCTCTAAAATAGGTCTGCAGTC 59.234 37.037 14.67 8.19 0.00 3.51
4743 5196 7.624549 TGAAATCTCTAAAATAGGTCTGCAGT 58.375 34.615 14.67 0.00 0.00 4.40
4744 5197 8.498054 TTGAAATCTCTAAAATAGGTCTGCAG 57.502 34.615 7.63 7.63 0.00 4.41
4745 5198 8.862325 TTTGAAATCTCTAAAATAGGTCTGCA 57.138 30.769 0.00 0.00 0.00 4.41
4755 5208 7.083858 CGCAGTCCATTTTGAAATCTCTAAAA 58.916 34.615 0.00 0.00 31.49 1.52
4756 5209 6.206634 ACGCAGTCCATTTTGAAATCTCTAAA 59.793 34.615 0.00 0.00 29.74 1.85
4757 5210 5.705441 ACGCAGTCCATTTTGAAATCTCTAA 59.295 36.000 0.00 0.00 29.74 2.10
4758 5211 5.122239 CACGCAGTCCATTTTGAAATCTCTA 59.878 40.000 0.00 0.00 41.61 2.43
4759 5212 4.074970 ACGCAGTCCATTTTGAAATCTCT 58.925 39.130 0.00 0.00 29.74 3.10
4761 5214 3.612479 GCACGCAGTCCATTTTGAAATCT 60.612 43.478 0.00 0.00 41.61 2.40
4762 5215 2.663119 GCACGCAGTCCATTTTGAAATC 59.337 45.455 0.00 0.00 41.61 2.17
4763 5216 2.676076 GCACGCAGTCCATTTTGAAAT 58.324 42.857 0.00 0.00 41.61 2.17
4764 5217 1.599171 CGCACGCAGTCCATTTTGAAA 60.599 47.619 0.00 0.00 41.61 2.69
4765 5218 0.040514 CGCACGCAGTCCATTTTGAA 60.041 50.000 0.00 0.00 41.61 2.69
4766 5219 1.573932 CGCACGCAGTCCATTTTGA 59.426 52.632 0.00 0.00 41.61 2.69
4767 5220 1.442520 CCGCACGCAGTCCATTTTG 60.443 57.895 0.00 0.00 41.61 2.44
4768 5221 0.960364 ATCCGCACGCAGTCCATTTT 60.960 50.000 0.00 0.00 41.61 1.82
4770 5223 2.108514 CATCCGCACGCAGTCCATT 61.109 57.895 0.00 0.00 41.61 3.16
4771 5224 1.955495 TACATCCGCACGCAGTCCAT 61.955 55.000 0.00 0.00 41.61 3.41
4772 5225 1.955495 ATACATCCGCACGCAGTCCA 61.955 55.000 0.00 0.00 41.61 4.02
4776 5229 3.122948 GGTTTATATACATCCGCACGCAG 59.877 47.826 0.00 0.00 0.00 5.18
4777 5230 3.061322 GGTTTATATACATCCGCACGCA 58.939 45.455 0.00 0.00 0.00 5.24
4780 5233 4.053295 ACGTGGTTTATATACATCCGCAC 58.947 43.478 0.00 0.00 0.00 5.34
4781 5234 4.325028 ACGTGGTTTATATACATCCGCA 57.675 40.909 0.00 0.00 0.00 5.69
4782 5235 4.986659 AGAACGTGGTTTATATACATCCGC 59.013 41.667 0.00 0.00 0.00 5.54
4784 5237 8.658499 AAGAAGAACGTGGTTTATATACATCC 57.342 34.615 0.00 0.00 0.00 3.51
4787 5240 9.590451 CCTAAAGAAGAACGTGGTTTATATACA 57.410 33.333 0.00 0.00 0.00 2.29
4788 5241 9.038803 CCCTAAAGAAGAACGTGGTTTATATAC 57.961 37.037 0.00 0.00 0.00 1.47
4789 5242 8.980596 TCCCTAAAGAAGAACGTGGTTTATATA 58.019 33.333 0.00 0.00 0.00 0.86
4790 5243 7.854337 TCCCTAAAGAAGAACGTGGTTTATAT 58.146 34.615 0.00 0.00 0.00 0.86
4791 5244 7.243604 TCCCTAAAGAAGAACGTGGTTTATA 57.756 36.000 0.00 0.00 0.00 0.98
4792 5245 6.117975 TCCCTAAAGAAGAACGTGGTTTAT 57.882 37.500 0.00 0.00 0.00 1.40
4793 5246 5.549742 TCCCTAAAGAAGAACGTGGTTTA 57.450 39.130 0.00 0.00 0.00 2.01
4794 5247 4.426736 TCCCTAAAGAAGAACGTGGTTT 57.573 40.909 0.00 0.00 0.00 3.27
4795 5248 4.386711 CTTCCCTAAAGAAGAACGTGGTT 58.613 43.478 0.00 0.00 45.08 3.67
4796 5249 4.004196 CTTCCCTAAAGAAGAACGTGGT 57.996 45.455 0.00 0.00 45.08 4.16
4810 5263 6.560003 TCTCAATTACTGCATTCTTCCCTA 57.440 37.500 0.00 0.00 0.00 3.53
4913 5366 4.506758 CTTGAAAAGTGCAATTATGGGGG 58.493 43.478 0.00 0.00 39.70 5.40
4919 5372 6.323739 ACTTTCTCCCTTGAAAAGTGCAATTA 59.676 34.615 0.00 0.00 44.25 1.40
4920 5373 5.129320 ACTTTCTCCCTTGAAAAGTGCAATT 59.871 36.000 0.00 0.00 44.25 2.32
4921 5374 4.651045 ACTTTCTCCCTTGAAAAGTGCAAT 59.349 37.500 0.00 0.00 44.25 3.56
4922 5375 4.023291 ACTTTCTCCCTTGAAAAGTGCAA 58.977 39.130 0.00 0.00 44.25 4.08
4923 5376 3.631250 ACTTTCTCCCTTGAAAAGTGCA 58.369 40.909 0.00 0.00 44.25 4.57
4924 5377 4.363138 CAACTTTCTCCCTTGAAAAGTGC 58.637 43.478 0.92 0.00 44.25 4.40
4925 5378 4.402474 ACCAACTTTCTCCCTTGAAAAGTG 59.598 41.667 0.92 0.00 44.25 3.16
4926 5379 4.402474 CACCAACTTTCTCCCTTGAAAAGT 59.598 41.667 0.00 0.00 44.25 2.66
4927 5380 4.402474 ACACCAACTTTCTCCCTTGAAAAG 59.598 41.667 0.00 0.00 45.69 2.27
4928 5381 4.349365 ACACCAACTTTCTCCCTTGAAAA 58.651 39.130 0.00 0.00 35.79 2.29
4929 5382 3.951680 GACACCAACTTTCTCCCTTGAAA 59.048 43.478 0.00 0.00 35.07 2.69
4930 5383 3.202151 AGACACCAACTTTCTCCCTTGAA 59.798 43.478 0.00 0.00 0.00 2.69
4931 5384 2.777692 AGACACCAACTTTCTCCCTTGA 59.222 45.455 0.00 0.00 0.00 3.02
4932 5385 3.214696 AGACACCAACTTTCTCCCTTG 57.785 47.619 0.00 0.00 0.00 3.61
4933 5386 3.072622 GGTAGACACCAACTTTCTCCCTT 59.927 47.826 0.00 0.00 45.04 3.95
4934 5387 2.638363 GGTAGACACCAACTTTCTCCCT 59.362 50.000 0.00 0.00 45.04 4.20
4935 5388 3.055209 GGTAGACACCAACTTTCTCCC 57.945 52.381 0.00 0.00 45.04 4.30
4946 5399 2.092103 TGCAATTATGGGGGTAGACACC 60.092 50.000 0.00 0.00 44.96 4.16
4947 5400 2.949644 GTGCAATTATGGGGGTAGACAC 59.050 50.000 0.00 0.00 0.00 3.67
4948 5401 2.849943 AGTGCAATTATGGGGGTAGACA 59.150 45.455 0.00 0.00 0.00 3.41
4949 5402 3.577805 AGTGCAATTATGGGGGTAGAC 57.422 47.619 0.00 0.00 0.00 2.59
4950 5403 3.525609 TGAAGTGCAATTATGGGGGTAGA 59.474 43.478 0.00 0.00 0.00 2.59
4951 5404 3.897239 TGAAGTGCAATTATGGGGGTAG 58.103 45.455 0.00 0.00 0.00 3.18
4952 5405 4.323569 TTGAAGTGCAATTATGGGGGTA 57.676 40.909 0.00 0.00 0.00 3.69
4953 5406 2.917713 TGAAGTGCAATTATGGGGGT 57.082 45.000 0.00 0.00 0.00 4.95
4954 5407 4.550076 TTTTGAAGTGCAATTATGGGGG 57.450 40.909 0.00 0.00 36.15 5.40
4955 5408 7.280652 CCTTAATTTTGAAGTGCAATTATGGGG 59.719 37.037 0.00 0.00 35.73 4.96
4956 5409 7.280652 CCCTTAATTTTGAAGTGCAATTATGGG 59.719 37.037 15.94 15.94 43.93 4.00
4957 5410 7.823799 ACCCTTAATTTTGAAGTGCAATTATGG 59.176 33.333 0.00 4.90 37.39 2.74
4958 5411 8.658609 CACCCTTAATTTTGAAGTGCAATTATG 58.341 33.333 0.00 0.00 36.15 1.90
4959 5412 8.592809 TCACCCTTAATTTTGAAGTGCAATTAT 58.407 29.630 0.00 0.00 36.15 1.28
4964 5417 5.860941 TTCACCCTTAATTTTGAAGTGCA 57.139 34.783 0.00 0.00 0.00 4.57
4967 5420 6.670695 AGCATTCACCCTTAATTTTGAAGT 57.329 33.333 0.00 0.00 31.72 3.01
4979 5432 2.372264 CATGTTGCTAGCATTCACCCT 58.628 47.619 20.13 3.95 0.00 4.34
5046 5500 3.304592 CCTTTGTGTTGTTGCGATCATCA 60.305 43.478 0.00 0.00 0.00 3.07
5053 5507 1.400142 TGAGACCTTTGTGTTGTTGCG 59.600 47.619 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.