Multiple sequence alignment - TraesCS3D01G511600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G511600 chr3D 100.000 2702 0 0 1 2702 596160347 596163048 0.000000e+00 4990
1 TraesCS3D01G511600 chr3D 93.132 1427 79 6 459 1883 596279076 596280485 0.000000e+00 2074
2 TraesCS3D01G511600 chr3D 82.293 1186 184 19 636 1810 596287326 596288496 0.000000e+00 1003
3 TraesCS3D01G511600 chr3D 88.523 819 63 14 1905 2699 596284390 596285201 0.000000e+00 963
4 TraesCS3D01G511600 chr3D 81.735 980 159 14 825 1795 596177387 596178355 0.000000e+00 800
5 TraesCS3D01G511600 chr3D 81.735 980 159 14 825 1795 596192938 596193906 0.000000e+00 800
6 TraesCS3D01G511600 chr3D 90.734 259 23 1 222 480 596273102 596273359 7.160000e-91 344
7 TraesCS3D01G511600 chr3D 88.789 223 21 4 5 227 596272811 596273029 1.230000e-68 270
8 TraesCS3D01G511600 chr3B 92.186 1702 111 15 222 1902 800932376 800934076 0.000000e+00 2386
9 TraesCS3D01G511600 chr3B 81.469 1144 174 27 689 1810 800953020 800954147 0.000000e+00 904
10 TraesCS3D01G511600 chr3B 91.388 627 48 5 1893 2517 800935233 800935855 0.000000e+00 854
11 TraesCS3D01G511600 chr3B 76.573 922 179 29 495 1403 801157939 801158836 3.150000e-129 472
12 TraesCS3D01G511600 chr3B 96.296 189 6 1 2512 2699 800944420 800944608 2.610000e-80 309
13 TraesCS3D01G511600 chr3B 89.767 215 17 5 14 227 800932093 800932303 1.230000e-68 270
14 TraesCS3D01G511600 chrUn 81.735 980 159 14 825 1795 278019353 278020321 0.000000e+00 800
15 TraesCS3D01G511600 chrUn 81.781 977 158 14 828 1795 302270924 302269959 0.000000e+00 800


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G511600 chr3D 596160347 596163048 2701 False 4990.000000 4990 100.000000 1 2702 1 chr3D.!!$F1 2701
1 TraesCS3D01G511600 chr3D 596279076 596288496 9420 False 1346.666667 2074 87.982667 459 2699 3 chr3D.!!$F5 2240
2 TraesCS3D01G511600 chr3D 596177387 596178355 968 False 800.000000 800 81.735000 825 1795 1 chr3D.!!$F2 970
3 TraesCS3D01G511600 chr3D 596192938 596193906 968 False 800.000000 800 81.735000 825 1795 1 chr3D.!!$F3 970
4 TraesCS3D01G511600 chr3D 596272811 596273359 548 False 307.000000 344 89.761500 5 480 2 chr3D.!!$F4 475
5 TraesCS3D01G511600 chr3B 800932093 800935855 3762 False 1170.000000 2386 91.113667 14 2517 3 chr3B.!!$F4 2503
6 TraesCS3D01G511600 chr3B 800953020 800954147 1127 False 904.000000 904 81.469000 689 1810 1 chr3B.!!$F2 1121
7 TraesCS3D01G511600 chr3B 801157939 801158836 897 False 472.000000 472 76.573000 495 1403 1 chr3B.!!$F3 908
8 TraesCS3D01G511600 chrUn 278019353 278020321 968 False 800.000000 800 81.735000 825 1795 1 chrUn.!!$F1 970
9 TraesCS3D01G511600 chrUn 302269959 302270924 965 True 800.000000 800 81.781000 828 1795 1 chrUn.!!$R1 967

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
134 136 1.906574 TCCACCTGGTCACATAGTTCC 59.093 52.381 0.0 0.0 36.34 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1906 10096 0.250338 GACCGCTTCAGGTTGGTCTT 60.25 55.0 3.09 0.0 46.09 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 77 5.803020 AATTAGGTCGATCTGCAGAAAAC 57.197 39.130 22.50 17.73 0.00 2.43
90 92 3.378112 CAGAAAACAGTGTGGCAGAAAGA 59.622 43.478 0.00 0.00 0.00 2.52
94 96 5.343307 AAACAGTGTGGCAGAAAGAAAAT 57.657 34.783 0.00 0.00 0.00 1.82
134 136 1.906574 TCCACCTGGTCACATAGTTCC 59.093 52.381 0.00 0.00 36.34 3.62
146 148 6.258068 GGTCACATAGTTCCTTAGATTTTCGG 59.742 42.308 0.00 0.00 0.00 4.30
147 149 5.815740 TCACATAGTTCCTTAGATTTTCGGC 59.184 40.000 0.00 0.00 0.00 5.54
258 337 7.425224 AACACTATTGAGGCTTATCTACAGT 57.575 36.000 0.00 0.00 0.00 3.55
262 341 9.469807 CACTATTGAGGCTTATCTACAGTAAAG 57.530 37.037 0.00 0.00 0.00 1.85
273 352 5.784578 TCTACAGTAAAGAGTGTTGCAGA 57.215 39.130 0.00 0.00 39.95 4.26
274 353 5.773575 TCTACAGTAAAGAGTGTTGCAGAG 58.226 41.667 0.00 0.00 39.95 3.35
420 499 9.979578 CAACTATCTATCTGCAGAATAAAGACT 57.020 33.333 22.50 3.74 0.00 3.24
430 509 8.873830 TCTGCAGAATAAAGACTAAAGATTTCG 58.126 33.333 15.67 0.00 0.00 3.46
466 545 7.287927 GGAGCAATGTATATCTGCCTACCTATA 59.712 40.741 0.00 0.00 36.73 1.31
492 571 7.605691 ACACACAAAACAAATTGATCCAAGAAA 59.394 29.630 0.00 0.00 34.38 2.52
493 572 8.614346 CACACAAAACAAATTGATCCAAGAAAT 58.386 29.630 0.00 0.00 34.38 2.17
574 654 2.025981 CCTGGGACATTGAATCAGGTCA 60.026 50.000 15.57 0.95 39.90 4.02
672 770 6.042781 TGGAGGATTGTACTGTATATCCAACC 59.957 42.308 22.91 22.71 39.20 3.77
764 865 7.351981 CACACACAATAAACTGATCGAAGAAA 58.648 34.615 0.00 0.00 43.58 2.52
792 893 7.617041 AAAACTATGACACTAATGAGGCTTC 57.383 36.000 0.00 0.00 0.00 3.86
849 9020 5.610132 ACCTAGGACATTGAATGAGATCCAT 59.390 40.000 17.98 2.25 36.99 3.41
873 9047 8.858186 CATCTACAATCTCGAAATACTATGCAG 58.142 37.037 0.00 0.00 0.00 4.41
913 9094 3.743396 GCTAGAAATTACATGCTCCTCGG 59.257 47.826 0.00 0.00 0.00 4.63
932 9113 5.127845 CCTCGGCACACCATCTATATAATCT 59.872 44.000 0.00 0.00 34.57 2.40
1185 9366 2.440501 CGTAATTTGAGCGACCAATGC 58.559 47.619 0.00 0.00 0.00 3.56
1191 9372 2.916702 TGAGCGACCAATGCATCTAT 57.083 45.000 0.00 0.00 33.85 1.98
1255 9436 0.317020 GACACCGTGCAAGCAGTTTC 60.317 55.000 0.00 0.00 0.00 2.78
1368 9551 0.176910 TGATCGAGTTTGGCGGCATA 59.823 50.000 14.32 4.90 0.00 3.14
1369 9552 1.295792 GATCGAGTTTGGCGGCATAA 58.704 50.000 14.32 7.51 0.00 1.90
1391 9574 2.705220 CTGGTGCATGCATCGTCG 59.295 61.111 25.64 11.87 0.00 5.12
1431 9614 1.641577 GGATCACTAACCAGACGCAC 58.358 55.000 0.00 0.00 0.00 5.34
1554 9741 1.954146 GCTGACGTCGTGCTTCCAA 60.954 57.895 21.11 0.00 0.00 3.53
1598 9785 4.265904 TGTTCGACTACAATGGACACAT 57.734 40.909 0.00 0.00 39.54 3.21
1689 9876 1.304282 GCCTCCTGCAAATCCTCCA 59.696 57.895 0.00 0.00 40.77 3.86
1764 9951 9.859427 TTTGATGCAAGGAATAAATTTCTAGTG 57.141 29.630 0.00 0.00 0.00 2.74
1810 10000 1.549620 TGGTCGTCCGGTATTGCTTTA 59.450 47.619 0.00 0.00 36.30 1.85
1812 10002 2.542595 GGTCGTCCGGTATTGCTTTATG 59.457 50.000 0.00 0.00 0.00 1.90
1837 10027 1.134401 CGGGTCATTCTAGTGCACCAT 60.134 52.381 14.63 0.00 0.00 3.55
1887 10077 1.576577 ACATCATGAGCTCACCCAGA 58.423 50.000 20.97 14.87 0.00 3.86
1902 10092 1.134280 CCCAGATGTCCACATGAGTCC 60.134 57.143 0.00 0.00 36.57 3.85
1903 10093 1.134280 CCAGATGTCCACATGAGTCCC 60.134 57.143 0.00 0.00 36.57 4.46
1904 10094 1.556451 CAGATGTCCACATGAGTCCCA 59.444 52.381 0.00 0.00 36.57 4.37
1906 10096 3.389002 CAGATGTCCACATGAGTCCCATA 59.611 47.826 0.00 0.00 36.57 2.74
1908 10098 3.912496 TGTCCACATGAGTCCCATAAG 57.088 47.619 0.00 0.00 33.31 1.73
1909 10099 3.449918 TGTCCACATGAGTCCCATAAGA 58.550 45.455 0.00 0.00 33.31 2.10
1910 10100 3.197766 TGTCCACATGAGTCCCATAAGAC 59.802 47.826 0.00 0.00 37.01 3.01
1911 10101 2.771943 TCCACATGAGTCCCATAAGACC 59.228 50.000 0.00 0.00 37.49 3.85
1912 10102 2.505407 CCACATGAGTCCCATAAGACCA 59.495 50.000 0.00 0.00 37.49 4.02
1953 11309 6.657875 CACTTTCCCTTCTTATCTCTTCCAT 58.342 40.000 0.00 0.00 0.00 3.41
2036 11392 1.605753 CTCGGATCCATCGTCCTACA 58.394 55.000 13.41 0.00 33.46 2.74
2059 11415 2.503546 GGCTAGCTCCTCTGCCAC 59.496 66.667 15.72 0.00 44.34 5.01
2076 11432 2.604139 CCACCCTAATCTCTCCTCCTC 58.396 57.143 0.00 0.00 0.00 3.71
2077 11433 2.604139 CACCCTAATCTCTCCTCCTCC 58.396 57.143 0.00 0.00 0.00 4.30
2078 11434 2.178984 CACCCTAATCTCTCCTCCTCCT 59.821 54.545 0.00 0.00 0.00 3.69
2079 11435 2.449345 ACCCTAATCTCTCCTCCTCCTC 59.551 54.545 0.00 0.00 0.00 3.71
2085 11441 2.979177 TCTCTCCTCCTCCTCGAGATA 58.021 52.381 15.71 0.00 32.42 1.98
2088 11444 2.635915 TCTCCTCCTCCTCGAGATAGTC 59.364 54.545 15.71 0.00 30.97 2.59
2114 11470 1.541310 CCACGCCTCCTTCCTACACA 61.541 60.000 0.00 0.00 0.00 3.72
2115 11471 0.537188 CACGCCTCCTTCCTACACAT 59.463 55.000 0.00 0.00 0.00 3.21
2116 11472 0.537188 ACGCCTCCTTCCTACACATG 59.463 55.000 0.00 0.00 0.00 3.21
2135 11491 0.962855 GAGCCCTCTCCTTGGTTTGC 60.963 60.000 0.00 0.00 33.19 3.68
2140 11496 1.153066 TCTCCTTGGTTTGCGCACA 60.153 52.632 11.12 0.00 0.00 4.57
2167 11523 0.735978 CCGTGCAGTCATTGTCGCTA 60.736 55.000 0.00 0.00 0.00 4.26
2197 11553 4.326227 TGGGGGCGACACTAGGGT 62.326 66.667 0.00 0.00 0.00 4.34
2200 11556 2.436115 GGGCGACACTAGGGTTGC 60.436 66.667 26.75 26.75 45.56 4.17
2214 11570 2.022129 GTTGCGACTGGTGTCCGAG 61.022 63.158 0.00 0.00 39.94 4.63
2282 11638 4.245660 TCATGTTGCTACAACTAGTGAGC 58.754 43.478 14.72 14.72 37.91 4.26
2285 11641 0.108804 TGCTACAACTAGTGAGCGGC 60.109 55.000 15.92 11.08 34.80 6.53
2297 11653 3.382832 AGCGGCCGTGCTAGAACT 61.383 61.111 28.70 9.64 45.14 3.01
2298 11654 3.188786 GCGGCCGTGCTAGAACTG 61.189 66.667 28.70 0.00 0.00 3.16
2300 11656 2.820037 GGCCGTGCTAGAACTGGC 60.820 66.667 21.74 21.74 44.98 4.85
2332 11688 1.595382 GCTATACGCCCACTGCCTG 60.595 63.158 0.00 0.00 36.24 4.85
2341 11697 2.558286 CCACTGCCTGCTGGTGTTG 61.558 63.158 11.69 5.64 35.27 3.33
2366 11722 4.605967 CGCGCACACACAACACCC 62.606 66.667 8.75 0.00 0.00 4.61
2370 11726 0.946700 CGCACACACAACACCCGATA 60.947 55.000 0.00 0.00 0.00 2.92
2378 11734 4.635765 CACACAACACCCGATATTGAAGAT 59.364 41.667 0.00 0.00 0.00 2.40
2392 11748 7.222611 CGATATTGAAGATGATACACACACACA 59.777 37.037 0.00 0.00 0.00 3.72
2404 11761 3.591835 CACACAACACCCCCGTGC 61.592 66.667 0.00 0.00 44.40 5.34
2429 11786 1.090052 GTCTAGCAACCCATCGGTGC 61.090 60.000 0.00 0.00 43.71 5.01
2434 11791 1.746615 CAACCCATCGGTGCTGGAG 60.747 63.158 0.00 0.00 43.71 3.86
2450 11807 3.649277 GAGATGGCGCCGACAGTGT 62.649 63.158 23.90 0.00 0.00 3.55
2456 11813 2.052237 CGCCGACAGTGTTGCAAC 60.052 61.111 22.83 22.83 0.00 4.17
2502 11859 0.251121 ATGGGATGTTGCAACCACGA 60.251 50.000 26.14 13.65 35.52 4.35
2506 11863 0.951558 GATGTTGCAACCACGACCTT 59.048 50.000 26.14 0.00 0.00 3.50
2507 11864 0.667993 ATGTTGCAACCACGACCTTG 59.332 50.000 26.14 0.00 0.00 3.61
2517 11874 0.037326 CACGACCTTGGCAAGCTAGA 60.037 55.000 21.77 0.00 0.00 2.43
2518 11875 0.685097 ACGACCTTGGCAAGCTAGAA 59.315 50.000 21.77 0.00 0.00 2.10
2519 11876 1.079503 CGACCTTGGCAAGCTAGAAC 58.920 55.000 21.77 7.42 0.00 3.01
2520 11877 1.338200 CGACCTTGGCAAGCTAGAACT 60.338 52.381 21.77 0.00 0.00 3.01
2521 11878 2.094182 CGACCTTGGCAAGCTAGAACTA 60.094 50.000 21.77 0.00 0.00 2.24
2522 11879 3.526534 GACCTTGGCAAGCTAGAACTAG 58.473 50.000 21.77 7.22 36.29 2.57
2548 11905 4.658063 CAACCTATGTTGGAACCTTACCA 58.342 43.478 3.15 0.00 46.56 3.25
2549 11906 4.569719 ACCTATGTTGGAACCTTACCAG 57.430 45.455 0.00 0.00 38.70 4.00
2550 11907 3.279434 CCTATGTTGGAACCTTACCAGC 58.721 50.000 0.00 0.00 38.70 4.85
2551 11908 1.821216 ATGTTGGAACCTTACCAGCG 58.179 50.000 0.00 0.00 40.60 5.18
2552 11909 0.759959 TGTTGGAACCTTACCAGCGA 59.240 50.000 0.00 0.00 40.60 4.93
2553 11910 1.349688 TGTTGGAACCTTACCAGCGAT 59.650 47.619 0.00 0.00 40.60 4.58
2554 11911 2.224670 TGTTGGAACCTTACCAGCGATT 60.225 45.455 0.00 0.00 40.60 3.34
2555 11912 2.107950 TGGAACCTTACCAGCGATTG 57.892 50.000 0.00 0.00 33.22 2.67
2556 11913 1.626321 TGGAACCTTACCAGCGATTGA 59.374 47.619 0.00 0.00 33.22 2.57
2557 11914 2.238646 TGGAACCTTACCAGCGATTGAT 59.761 45.455 0.00 0.00 33.22 2.57
2558 11915 2.614057 GGAACCTTACCAGCGATTGATG 59.386 50.000 0.00 0.00 0.00 3.07
2566 11923 1.742761 CAGCGATTGATGGAACCAGT 58.257 50.000 0.00 0.00 0.00 4.00
2567 11924 1.399440 CAGCGATTGATGGAACCAGTG 59.601 52.381 0.00 0.00 0.00 3.66
2568 11925 1.003580 AGCGATTGATGGAACCAGTGT 59.996 47.619 0.00 0.00 0.00 3.55
2569 11926 1.398390 GCGATTGATGGAACCAGTGTC 59.602 52.381 0.00 0.00 0.00 3.67
2570 11927 2.698803 CGATTGATGGAACCAGTGTCA 58.301 47.619 0.00 0.00 0.00 3.58
2571 11928 2.674852 CGATTGATGGAACCAGTGTCAG 59.325 50.000 0.00 0.00 0.00 3.51
2572 11929 2.566833 TTGATGGAACCAGTGTCAGG 57.433 50.000 0.00 0.00 0.00 3.86
2573 11930 0.692476 TGATGGAACCAGTGTCAGGG 59.308 55.000 0.00 0.00 0.00 4.45
2574 11931 0.693049 GATGGAACCAGTGTCAGGGT 59.307 55.000 0.00 0.00 39.65 4.34
2576 11933 0.923358 TGGAACCAGTGTCAGGGTTT 59.077 50.000 9.59 0.00 46.97 3.27
2577 11934 1.286553 TGGAACCAGTGTCAGGGTTTT 59.713 47.619 9.59 0.00 46.97 2.43
2578 11935 1.954382 GGAACCAGTGTCAGGGTTTTC 59.046 52.381 9.59 3.71 46.97 2.29
2579 11936 2.422945 GGAACCAGTGTCAGGGTTTTCT 60.423 50.000 9.59 0.00 46.97 2.52
2580 11937 2.640316 ACCAGTGTCAGGGTTTTCTC 57.360 50.000 0.00 0.00 32.12 2.87
2581 11938 1.202651 ACCAGTGTCAGGGTTTTCTCG 60.203 52.381 0.00 0.00 32.12 4.04
2582 11939 1.070134 CCAGTGTCAGGGTTTTCTCGA 59.930 52.381 0.00 0.00 0.00 4.04
2583 11940 2.484770 CCAGTGTCAGGGTTTTCTCGAA 60.485 50.000 0.00 0.00 0.00 3.71
2584 11941 2.544267 CAGTGTCAGGGTTTTCTCGAAC 59.456 50.000 0.00 0.00 0.00 3.95
2585 11942 1.871676 GTGTCAGGGTTTTCTCGAACC 59.128 52.381 0.00 0.00 46.70 3.62
2591 11948 1.157585 GGTTTTCTCGAACCAGAGGC 58.842 55.000 0.00 0.00 46.66 4.70
2592 11949 1.542547 GGTTTTCTCGAACCAGAGGCA 60.543 52.381 0.00 0.00 46.66 4.75
2593 11950 1.531578 GTTTTCTCGAACCAGAGGCAC 59.468 52.381 0.00 0.00 38.71 5.01
2594 11951 0.034896 TTTCTCGAACCAGAGGCACC 59.965 55.000 0.00 0.00 38.71 5.01
2595 11952 0.832135 TTCTCGAACCAGAGGCACCT 60.832 55.000 0.00 0.00 38.71 4.00
2596 11953 1.216710 CTCGAACCAGAGGCACCTC 59.783 63.158 8.74 8.74 43.03 3.85
2597 11954 2.125912 CGAACCAGAGGCACCTCG 60.126 66.667 10.99 6.34 46.90 4.63
2598 11955 2.266055 GAACCAGAGGCACCTCGG 59.734 66.667 19.51 19.51 46.90 4.63
2602 11959 2.046892 CAGAGGCACCTCGGGTTG 60.047 66.667 10.99 0.43 46.90 3.77
2603 11960 4.021925 AGAGGCACCTCGGGTTGC 62.022 66.667 10.99 0.00 46.90 4.17
2604 11961 4.329545 GAGGCACCTCGGGTTGCA 62.330 66.667 7.27 0.00 31.02 4.08
2605 11962 3.842925 GAGGCACCTCGGGTTGCAA 62.843 63.158 7.27 0.00 31.02 4.08
2606 11963 3.670377 GGCACCTCGGGTTGCAAC 61.670 66.667 21.59 21.59 31.02 4.17
2620 11977 2.932663 GCAACCAGCAAGCTAGTGA 58.067 52.632 0.00 0.00 44.79 3.41
2621 11978 0.801251 GCAACCAGCAAGCTAGTGAG 59.199 55.000 0.00 0.00 44.79 3.51
2622 11979 3.131383 GCAACCAGCAAGCTAGTGAGC 62.131 57.143 0.00 0.00 46.13 4.26
2631 11988 3.935993 GCTAGTGAGCTGGAACCAA 57.064 52.632 0.00 0.00 45.98 3.67
2632 11989 2.185004 GCTAGTGAGCTGGAACCAAA 57.815 50.000 0.00 0.00 45.98 3.28
2633 11990 2.504367 GCTAGTGAGCTGGAACCAAAA 58.496 47.619 0.00 0.00 45.98 2.44
2634 11991 3.084786 GCTAGTGAGCTGGAACCAAAAT 58.915 45.455 0.00 0.00 45.98 1.82
2635 11992 3.119708 GCTAGTGAGCTGGAACCAAAATG 60.120 47.826 0.00 0.00 45.98 2.32
2636 11993 2.242043 AGTGAGCTGGAACCAAAATGG 58.758 47.619 0.00 0.00 45.02 3.16
2637 11994 0.968405 TGAGCTGGAACCAAAATGGC 59.032 50.000 0.00 0.00 42.67 4.40
2638 11995 0.109132 GAGCTGGAACCAAAATGGCG 60.109 55.000 0.00 0.00 42.67 5.69
2639 11996 1.079888 GCTGGAACCAAAATGGCGG 60.080 57.895 0.00 0.00 42.67 6.13
2640 11997 1.079888 CTGGAACCAAAATGGCGGC 60.080 57.895 0.00 0.00 42.67 6.53
2641 11998 2.126110 GGAACCAAAATGGCGGCG 60.126 61.111 0.51 0.51 42.67 6.46
2642 11999 2.631580 GGAACCAAAATGGCGGCGA 61.632 57.895 12.98 0.00 42.67 5.54
2643 12000 1.154035 GAACCAAAATGGCGGCGAG 60.154 57.895 12.98 0.00 42.67 5.03
2644 12001 3.281359 AACCAAAATGGCGGCGAGC 62.281 57.895 12.98 0.00 42.67 5.03
2681 12038 1.133025 CAATGTTGGAACCATCTCGGC 59.867 52.381 0.00 0.00 39.03 5.54
2682 12039 0.744414 ATGTTGGAACCATCTCGGCG 60.744 55.000 0.00 0.00 39.03 6.46
2683 12040 2.106683 GTTGGAACCATCTCGGCGG 61.107 63.158 7.21 0.00 39.03 6.13
2684 12041 2.589157 TTGGAACCATCTCGGCGGT 61.589 57.895 7.21 0.00 39.03 5.68
2685 12042 2.511600 GGAACCATCTCGGCGGTG 60.512 66.667 7.21 3.86 39.03 4.94
2686 12043 2.577059 GAACCATCTCGGCGGTGA 59.423 61.111 7.21 6.51 39.03 4.02
2687 12044 1.519455 GAACCATCTCGGCGGTGAG 60.519 63.158 7.21 0.00 39.03 3.51
2698 12055 3.046280 GCGGTGAGCTACAACCTAC 57.954 57.895 10.17 0.69 44.04 3.18
2699 12056 0.245539 GCGGTGAGCTACAACCTACA 59.754 55.000 10.17 0.00 44.04 2.74
2700 12057 1.134788 GCGGTGAGCTACAACCTACAT 60.135 52.381 10.17 0.00 44.04 2.29
2701 12058 2.540515 CGGTGAGCTACAACCTACATG 58.459 52.381 10.17 0.00 31.55 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 41 7.776618 TCGACCTAATTAGTGTCATGGATAT 57.223 36.000 22.84 0.00 0.00 1.63
40 42 7.670140 AGATCGACCTAATTAGTGTCATGGATA 59.330 37.037 22.84 9.56 0.00 2.59
75 77 5.192327 AGAATTTTCTTTCTGCCACACTG 57.808 39.130 0.00 0.00 34.68 3.66
230 309 9.143155 TGTAGATAAGCCTCAATAGTGTTATCA 57.857 33.333 11.48 0.14 32.68 2.15
231 310 9.632807 CTGTAGATAAGCCTCAATAGTGTTATC 57.367 37.037 4.11 4.11 31.54 1.75
241 320 7.178628 ACACTCTTTACTGTAGATAAGCCTCAA 59.821 37.037 0.00 0.00 0.00 3.02
258 337 3.306364 GGCTCTCTCTGCAACACTCTTTA 60.306 47.826 0.00 0.00 0.00 1.85
262 341 0.319728 TGGCTCTCTCTGCAACACTC 59.680 55.000 0.00 0.00 0.00 3.51
273 352 9.178758 CATTTAAAGTTATAGGTTTGGCTCTCT 57.821 33.333 0.00 0.00 0.00 3.10
274 353 9.174166 TCATTTAAAGTTATAGGTTTGGCTCTC 57.826 33.333 0.00 0.00 0.00 3.20
406 485 8.547967 ACGAAATCTTTAGTCTTTATTCTGCA 57.452 30.769 0.00 0.00 0.00 4.41
466 545 6.638610 TCTTGGATCAATTTGTTTTGTGTGT 58.361 32.000 0.00 0.00 0.00 3.72
574 654 8.780846 TCGAAAGTATTATGTGGTTGTACATT 57.219 30.769 0.00 0.00 41.31 2.71
577 657 9.095065 AGAATCGAAAGTATTATGTGGTTGTAC 57.905 33.333 0.00 0.00 0.00 2.90
672 770 9.547753 TCTTTTTCTTTATTCCTCGGATAGATG 57.452 33.333 0.00 0.00 0.00 2.90
723 824 2.700371 TGTGTGCATAGGTAGGGAGATG 59.300 50.000 0.00 0.00 0.00 2.90
809 910 0.472471 AGGTTCGGTTCTTTCTGCCA 59.528 50.000 0.00 0.00 0.00 4.92
849 9020 8.166422 TCTGCATAGTATTTCGAGATTGTAGA 57.834 34.615 0.00 0.00 0.00 2.59
906 9080 1.043816 ATAGATGGTGTGCCGAGGAG 58.956 55.000 0.00 0.00 37.67 3.69
932 9113 4.065088 GCTCATCGGCATCCAAATAGTAA 58.935 43.478 0.00 0.00 0.00 2.24
939 9120 0.252761 TTCTGCTCATCGGCATCCAA 59.747 50.000 0.00 0.00 41.63 3.53
949 9130 3.057736 GCTGATTGTGTTGTTCTGCTCAT 60.058 43.478 0.00 0.00 33.23 2.90
1089 9270 4.592192 TAGATCGGCTGCGGCTGC 62.592 66.667 22.17 21.78 44.02 5.25
1167 9348 3.947196 AGATGCATTGGTCGCTCAAATTA 59.053 39.130 0.00 0.00 0.00 1.40
1171 9352 2.689553 TAGATGCATTGGTCGCTCAA 57.310 45.000 0.00 0.00 0.00 3.02
1185 9366 5.864474 GTCCCGTAATGAGCTAACATAGATG 59.136 44.000 0.00 0.00 0.00 2.90
1191 9372 1.483415 GGGTCCCGTAATGAGCTAACA 59.517 52.381 0.00 0.00 0.00 2.41
1255 9436 4.891727 CCCGTCTGGATTCCCGCG 62.892 72.222 0.00 0.00 37.49 6.46
1338 9521 1.580385 CTCGATCACGACGTCGGTG 60.580 63.158 37.89 30.48 43.81 4.94
1368 9551 1.108776 GATGCATGCACCAGGTGATT 58.891 50.000 25.37 2.84 35.23 2.57
1369 9552 1.099295 CGATGCATGCACCAGGTGAT 61.099 55.000 25.37 10.93 35.23 3.06
1419 9602 1.007038 GGTCACGTGCGTCTGGTTA 60.007 57.895 11.67 0.00 0.00 2.85
1598 9785 1.272490 CTTTCTCTACGGTCAGCCACA 59.728 52.381 0.00 0.00 34.09 4.17
1635 9822 3.694566 GGAACTTCTTGAACACAACCACT 59.305 43.478 0.00 0.00 0.00 4.00
1764 9951 5.904362 AAATAGGACTGTTTCATGCTTCC 57.096 39.130 0.00 0.00 0.00 3.46
1810 10000 3.689649 GCACTAGAATGACCCGAAAACAT 59.310 43.478 0.00 0.00 0.00 2.71
1812 10002 3.071479 TGCACTAGAATGACCCGAAAAC 58.929 45.455 0.00 0.00 0.00 2.43
1887 10077 4.040047 TCTTATGGGACTCATGTGGACAT 58.960 43.478 0.00 3.62 37.30 3.06
1902 10092 2.009774 CGCTTCAGGTTGGTCTTATGG 58.990 52.381 0.00 0.00 0.00 2.74
1903 10093 2.009774 CCGCTTCAGGTTGGTCTTATG 58.990 52.381 0.00 0.00 0.00 1.90
1904 10094 1.628846 ACCGCTTCAGGTTGGTCTTAT 59.371 47.619 0.00 0.00 43.00 1.73
1906 10096 0.250338 GACCGCTTCAGGTTGGTCTT 60.250 55.000 3.09 0.00 46.09 3.01
1908 10098 2.027625 CGACCGCTTCAGGTTGGTC 61.028 63.158 0.18 0.18 46.09 4.02
1909 10099 2.030562 CGACCGCTTCAGGTTGGT 59.969 61.111 0.00 0.00 46.09 3.67
1910 10100 3.423154 GCGACCGCTTCAGGTTGG 61.423 66.667 7.19 0.00 46.09 3.77
1911 10101 3.777925 CGCGACCGCTTCAGGTTG 61.778 66.667 12.69 0.00 46.09 3.77
1953 11309 4.638421 ACGAACAAGAAACATCTGAAACCA 59.362 37.500 0.00 0.00 0.00 3.67
2002 11358 3.237741 GAGGAGAGGCGGGGATGG 61.238 72.222 0.00 0.00 0.00 3.51
2009 11365 1.872197 GATGGATCCGAGGAGAGGCG 61.872 65.000 7.39 0.00 0.00 5.52
2036 11392 1.040339 CAGAGGAGCTAGCCGGAGTT 61.040 60.000 12.13 0.00 0.00 3.01
2059 11415 2.554344 CGAGGAGGAGGAGAGATTAGGG 60.554 59.091 0.00 0.00 0.00 3.53
2076 11432 3.254657 GTGGAGAATGGACTATCTCGAGG 59.745 52.174 13.56 0.00 42.40 4.63
2077 11433 3.058570 CGTGGAGAATGGACTATCTCGAG 60.059 52.174 5.93 5.93 42.40 4.04
2078 11434 2.879026 CGTGGAGAATGGACTATCTCGA 59.121 50.000 0.00 0.00 42.40 4.04
2079 11435 2.605823 GCGTGGAGAATGGACTATCTCG 60.606 54.545 0.00 0.00 42.40 4.04
2085 11441 1.617947 GGAGGCGTGGAGAATGGACT 61.618 60.000 0.00 0.00 0.00 3.85
2088 11444 0.462759 GAAGGAGGCGTGGAGAATGG 60.463 60.000 0.00 0.00 0.00 3.16
2114 11470 1.005215 CAAACCAAGGAGAGGGCTCAT 59.995 52.381 0.00 0.00 43.14 2.90
2115 11471 0.401738 CAAACCAAGGAGAGGGCTCA 59.598 55.000 0.00 0.00 43.14 4.26
2116 11472 0.962855 GCAAACCAAGGAGAGGGCTC 60.963 60.000 0.00 0.00 40.54 4.70
2148 11504 0.735978 TAGCGACAATGACTGCACGG 60.736 55.000 0.00 0.00 0.00 4.94
2167 11523 1.224592 CCCCCAGCTCGCTATTTGT 59.775 57.895 0.00 0.00 0.00 2.83
2170 11526 4.241555 CGCCCCCAGCTCGCTATT 62.242 66.667 0.00 0.00 40.39 1.73
2197 11553 2.023414 AACTCGGACACCAGTCGCAA 62.023 55.000 0.00 0.00 45.92 4.85
2200 11556 0.243907 ATCAACTCGGACACCAGTCG 59.756 55.000 0.00 0.00 45.92 4.18
2214 11570 2.598589 TGCGACTACGGTTGTATCAAC 58.401 47.619 4.30 4.30 40.15 3.18
2241 11597 1.139654 GATGTGGAGGTCATAGCAGCA 59.860 52.381 0.00 0.00 0.00 4.41
2282 11638 2.509336 CCAGTTCTAGCACGGCCG 60.509 66.667 26.86 26.86 0.00 6.13
2285 11641 3.188786 GCGCCAGTTCTAGCACGG 61.189 66.667 0.00 0.51 0.00 4.94
2293 11649 1.517694 CATTGCCATGCGCCAGTTC 60.518 57.895 4.18 0.00 36.24 3.01
2318 11674 4.393155 CAGCAGGCAGTGGGCGTA 62.393 66.667 0.00 0.00 46.16 4.42
2332 11688 2.022129 CGTCGTCTCCAACACCAGC 61.022 63.158 0.00 0.00 0.00 4.85
2336 11692 3.764049 GCGCGTCGTCTCCAACAC 61.764 66.667 8.43 0.00 0.00 3.32
2341 11697 4.994201 TGTGTGCGCGTCGTCTCC 62.994 66.667 8.43 0.00 0.00 3.71
2350 11706 4.605967 CGGGTGTTGTGTGTGCGC 62.606 66.667 0.00 0.00 0.00 6.09
2351 11707 0.946700 TATCGGGTGTTGTGTGTGCG 60.947 55.000 0.00 0.00 0.00 5.34
2354 11710 3.410631 TCAATATCGGGTGTTGTGTGT 57.589 42.857 0.00 0.00 31.53 3.72
2366 11722 7.222611 TGTGTGTGTGTATCATCTTCAATATCG 59.777 37.037 0.00 0.00 0.00 2.92
2370 11726 6.486320 TGTTGTGTGTGTGTATCATCTTCAAT 59.514 34.615 0.00 0.00 0.00 2.57
2378 11734 2.566913 GGGTGTTGTGTGTGTGTATCA 58.433 47.619 0.00 0.00 0.00 2.15
2420 11777 1.227764 CCATCTCCAGCACCGATGG 60.228 63.158 9.08 9.08 45.65 3.51
2421 11778 1.890979 GCCATCTCCAGCACCGATG 60.891 63.158 0.00 0.00 35.48 3.84
2429 11786 4.147449 TGTCGGCGCCATCTCCAG 62.147 66.667 28.98 8.23 0.00 3.86
2434 11791 2.742372 AACACTGTCGGCGCCATC 60.742 61.111 28.98 18.74 0.00 3.51
2502 11859 2.355209 GCTAGTTCTAGCTTGCCAAGGT 60.355 50.000 20.42 14.30 42.74 3.50
2506 11863 2.038426 TGTTGCTAGTTCTAGCTTGCCA 59.962 45.455 25.49 16.14 43.20 4.92
2507 11864 2.699954 TGTTGCTAGTTCTAGCTTGCC 58.300 47.619 25.49 14.40 43.20 4.52
2527 11884 4.809691 GCTGGTAAGGTTCCAACATAGGTT 60.810 45.833 0.00 0.00 37.87 3.50
2528 11885 3.308188 GCTGGTAAGGTTCCAACATAGGT 60.308 47.826 0.00 0.00 34.35 3.08
2529 11886 3.279434 GCTGGTAAGGTTCCAACATAGG 58.721 50.000 0.00 0.00 34.35 2.57
2530 11887 2.936498 CGCTGGTAAGGTTCCAACATAG 59.064 50.000 0.00 0.00 34.35 2.23
2531 11888 2.568062 TCGCTGGTAAGGTTCCAACATA 59.432 45.455 0.00 0.00 34.35 2.29
2532 11889 1.349688 TCGCTGGTAAGGTTCCAACAT 59.650 47.619 0.00 0.00 34.35 2.71
2533 11890 0.759959 TCGCTGGTAAGGTTCCAACA 59.240 50.000 0.00 0.00 34.35 3.33
2534 11891 2.109425 ATCGCTGGTAAGGTTCCAAC 57.891 50.000 0.00 0.00 34.35 3.77
2535 11892 2.039216 TCAATCGCTGGTAAGGTTCCAA 59.961 45.455 0.00 0.00 34.35 3.53
2536 11893 1.626321 TCAATCGCTGGTAAGGTTCCA 59.374 47.619 0.00 0.00 0.00 3.53
2537 11894 2.396590 TCAATCGCTGGTAAGGTTCC 57.603 50.000 0.00 0.00 0.00 3.62
2538 11895 2.614057 CCATCAATCGCTGGTAAGGTTC 59.386 50.000 0.00 0.00 0.00 3.62
2539 11896 2.238646 TCCATCAATCGCTGGTAAGGTT 59.761 45.455 0.00 0.00 34.03 3.50
2540 11897 1.837439 TCCATCAATCGCTGGTAAGGT 59.163 47.619 0.00 0.00 34.03 3.50
2541 11898 2.614057 GTTCCATCAATCGCTGGTAAGG 59.386 50.000 0.00 0.00 34.03 2.69
2542 11899 2.614057 GGTTCCATCAATCGCTGGTAAG 59.386 50.000 0.00 0.00 34.03 2.34
2543 11900 2.026729 TGGTTCCATCAATCGCTGGTAA 60.027 45.455 0.00 0.00 34.03 2.85
2544 11901 1.557371 TGGTTCCATCAATCGCTGGTA 59.443 47.619 0.00 0.00 34.03 3.25
2545 11902 0.327924 TGGTTCCATCAATCGCTGGT 59.672 50.000 0.00 0.00 34.03 4.00
2546 11903 1.019673 CTGGTTCCATCAATCGCTGG 58.980 55.000 0.00 0.00 0.00 4.85
2547 11904 1.399440 CACTGGTTCCATCAATCGCTG 59.601 52.381 0.00 0.00 0.00 5.18
2548 11905 1.003580 ACACTGGTTCCATCAATCGCT 59.996 47.619 0.00 0.00 0.00 4.93
2549 11906 1.398390 GACACTGGTTCCATCAATCGC 59.602 52.381 0.00 0.00 0.00 4.58
2550 11907 2.674852 CTGACACTGGTTCCATCAATCG 59.325 50.000 0.00 0.00 0.00 3.34
2551 11908 3.012518 CCTGACACTGGTTCCATCAATC 58.987 50.000 0.00 0.00 0.00 2.67
2552 11909 2.291153 CCCTGACACTGGTTCCATCAAT 60.291 50.000 0.00 0.00 0.00 2.57
2553 11910 1.073763 CCCTGACACTGGTTCCATCAA 59.926 52.381 0.00 0.00 0.00 2.57
2554 11911 0.692476 CCCTGACACTGGTTCCATCA 59.308 55.000 0.00 0.00 0.00 3.07
2555 11912 0.693049 ACCCTGACACTGGTTCCATC 59.307 55.000 0.00 0.00 0.00 3.51
2556 11913 1.149101 AACCCTGACACTGGTTCCAT 58.851 50.000 0.00 0.00 40.87 3.41
2557 11914 0.923358 AAACCCTGACACTGGTTCCA 59.077 50.000 5.36 0.00 43.94 3.53
2558 11915 1.954382 GAAAACCCTGACACTGGTTCC 59.046 52.381 5.36 0.00 43.94 3.62
2559 11916 2.879026 GAGAAAACCCTGACACTGGTTC 59.121 50.000 5.36 0.00 43.94 3.62
2560 11917 2.745152 CGAGAAAACCCTGACACTGGTT 60.745 50.000 0.00 0.00 46.63 3.67
2561 11918 1.202651 CGAGAAAACCCTGACACTGGT 60.203 52.381 0.00 0.00 36.06 4.00
2562 11919 1.070134 TCGAGAAAACCCTGACACTGG 59.930 52.381 0.00 0.00 0.00 4.00
2563 11920 2.526304 TCGAGAAAACCCTGACACTG 57.474 50.000 0.00 0.00 0.00 3.66
2564 11921 2.484947 GGTTCGAGAAAACCCTGACACT 60.485 50.000 0.00 0.00 42.46 3.55
2565 11922 1.871676 GGTTCGAGAAAACCCTGACAC 59.128 52.381 0.00 0.00 42.46 3.67
2566 11923 1.487142 TGGTTCGAGAAAACCCTGACA 59.513 47.619 1.62 0.00 46.81 3.58
2567 11924 2.143925 CTGGTTCGAGAAAACCCTGAC 58.856 52.381 1.62 0.00 46.81 3.51
2568 11925 2.037251 CTCTGGTTCGAGAAAACCCTGA 59.963 50.000 1.62 0.36 46.81 3.86
2569 11926 2.417719 CTCTGGTTCGAGAAAACCCTG 58.582 52.381 1.62 0.00 46.81 4.45
2570 11927 1.348036 CCTCTGGTTCGAGAAAACCCT 59.652 52.381 1.62 0.00 46.81 4.34
2571 11928 1.809684 CCTCTGGTTCGAGAAAACCC 58.190 55.000 1.62 0.00 46.81 4.11
2573 11930 1.531578 GTGCCTCTGGTTCGAGAAAAC 59.468 52.381 0.00 0.00 32.74 2.43
2574 11931 1.542547 GGTGCCTCTGGTTCGAGAAAA 60.543 52.381 0.00 0.00 32.74 2.29
2575 11932 0.034896 GGTGCCTCTGGTTCGAGAAA 59.965 55.000 0.00 0.00 32.74 2.52
2576 11933 0.832135 AGGTGCCTCTGGTTCGAGAA 60.832 55.000 0.00 0.00 32.74 2.87
2577 11934 1.228894 AGGTGCCTCTGGTTCGAGA 60.229 57.895 0.00 0.00 32.74 4.04
2578 11935 1.216710 GAGGTGCCTCTGGTTCGAG 59.783 63.158 10.80 0.00 39.80 4.04
2579 11936 2.636412 CGAGGTGCCTCTGGTTCGA 61.636 63.158 15.40 0.00 40.69 3.71
2580 11937 2.125912 CGAGGTGCCTCTGGTTCG 60.126 66.667 15.40 0.00 40.69 3.95
2581 11938 2.266055 CCGAGGTGCCTCTGGTTC 59.734 66.667 15.40 0.00 40.69 3.62
2582 11939 3.322466 CCCGAGGTGCCTCTGGTT 61.322 66.667 17.33 0.00 40.91 3.67
2585 11942 2.046892 CAACCCGAGGTGCCTCTG 60.047 66.667 15.40 9.32 40.69 3.35
2586 11943 4.021925 GCAACCCGAGGTGCCTCT 62.022 66.667 15.40 0.00 40.69 3.69
2587 11944 3.842925 TTGCAACCCGAGGTGCCTC 62.843 63.158 3.88 8.14 35.34 4.70
2588 11945 3.884774 TTGCAACCCGAGGTGCCT 61.885 61.111 3.88 0.00 35.34 4.75
2589 11946 3.670377 GTTGCAACCCGAGGTGCC 61.670 66.667 19.15 0.00 35.34 5.01
2590 11947 3.670377 GGTTGCAACCCGAGGTGC 61.670 66.667 34.36 0.00 43.43 5.01
2602 11959 0.801251 CTCACTAGCTTGCTGGTTGC 59.199 55.000 8.88 0.00 43.25 4.17
2603 11960 0.801251 GCTCACTAGCTTGCTGGTTG 59.199 55.000 8.88 6.69 45.85 3.77
2604 11961 3.239861 GCTCACTAGCTTGCTGGTT 57.760 52.632 8.88 0.00 45.85 3.67
2613 11970 6.166045 CCATTTTGGTTCCAGCTCACTAGC 62.166 50.000 0.00 0.00 39.99 3.42
2614 11971 3.441572 CCATTTTGGTTCCAGCTCACTAG 59.558 47.826 0.00 0.00 31.35 2.57
2615 11972 3.420893 CCATTTTGGTTCCAGCTCACTA 58.579 45.455 0.00 0.00 31.35 2.74
2616 11973 2.242043 CCATTTTGGTTCCAGCTCACT 58.758 47.619 0.00 0.00 31.35 3.41
2617 11974 1.337167 GCCATTTTGGTTCCAGCTCAC 60.337 52.381 0.00 0.00 40.46 3.51
2618 11975 0.968405 GCCATTTTGGTTCCAGCTCA 59.032 50.000 0.00 0.00 40.46 4.26
2619 11976 0.109132 CGCCATTTTGGTTCCAGCTC 60.109 55.000 0.00 0.00 40.46 4.09
2620 11977 1.535204 CCGCCATTTTGGTTCCAGCT 61.535 55.000 0.00 0.00 40.46 4.24
2621 11978 1.079888 CCGCCATTTTGGTTCCAGC 60.080 57.895 0.00 0.00 40.46 4.85
2622 11979 1.079888 GCCGCCATTTTGGTTCCAG 60.080 57.895 0.00 0.00 40.46 3.86
2623 11980 2.925262 CGCCGCCATTTTGGTTCCA 61.925 57.895 0.00 0.00 40.46 3.53
2624 11981 2.126110 CGCCGCCATTTTGGTTCC 60.126 61.111 0.00 0.00 40.46 3.62
2625 11982 1.154035 CTCGCCGCCATTTTGGTTC 60.154 57.895 0.00 0.00 40.46 3.62
2626 11983 2.961768 CTCGCCGCCATTTTGGTT 59.038 55.556 0.00 0.00 40.46 3.67
2627 11984 3.747976 GCTCGCCGCCATTTTGGT 61.748 61.111 0.00 0.00 40.46 3.67
2628 11985 3.443045 AGCTCGCCGCCATTTTGG 61.443 61.111 0.00 0.00 41.55 3.28
2629 11986 2.202518 CAGCTCGCCGCCATTTTG 60.203 61.111 0.00 0.00 40.39 2.44
2630 11987 4.120331 GCAGCTCGCCGCCATTTT 62.120 61.111 0.00 0.00 40.39 1.82
2660 12017 4.091524 GCCGAGATGGTTCCAACATTGG 62.092 54.545 4.11 4.11 44.69 3.16
2661 12018 1.133025 GCCGAGATGGTTCCAACATTG 59.867 52.381 0.00 0.00 41.21 2.82
2662 12019 1.463674 GCCGAGATGGTTCCAACATT 58.536 50.000 0.00 0.00 41.21 2.71
2663 12020 0.744414 CGCCGAGATGGTTCCAACAT 60.744 55.000 0.00 0.00 41.21 2.71
2664 12021 1.375396 CGCCGAGATGGTTCCAACA 60.375 57.895 0.00 0.00 41.21 3.33
2665 12022 2.106683 CCGCCGAGATGGTTCCAAC 61.107 63.158 0.00 0.00 41.21 3.77
2666 12023 2.267642 CCGCCGAGATGGTTCCAA 59.732 61.111 0.00 0.00 41.21 3.53
2667 12024 3.000819 ACCGCCGAGATGGTTCCA 61.001 61.111 0.00 0.00 41.21 3.53
2668 12025 2.511600 CACCGCCGAGATGGTTCC 60.512 66.667 0.00 0.00 41.21 3.62
2669 12026 1.519455 CTCACCGCCGAGATGGTTC 60.519 63.158 0.00 0.00 41.21 3.62
2670 12027 2.579201 CTCACCGCCGAGATGGTT 59.421 61.111 0.00 0.00 41.21 3.67
2671 12028 4.148825 GCTCACCGCCGAGATGGT 62.149 66.667 3.70 0.00 41.21 3.55
2672 12029 2.490148 TAGCTCACCGCCGAGATGG 61.490 63.158 0.00 0.00 40.39 3.51
2673 12030 1.299468 GTAGCTCACCGCCGAGATG 60.299 63.158 0.00 0.00 40.39 2.90
2674 12031 1.320344 TTGTAGCTCACCGCCGAGAT 61.320 55.000 0.00 0.00 40.39 2.75
2675 12032 1.974875 TTGTAGCTCACCGCCGAGA 60.975 57.895 0.00 0.00 40.39 4.04
2676 12033 1.805945 GTTGTAGCTCACCGCCGAG 60.806 63.158 0.00 0.00 40.39 4.63
2677 12034 2.260434 GTTGTAGCTCACCGCCGA 59.740 61.111 0.00 0.00 40.39 5.54
2678 12035 1.940883 TAGGTTGTAGCTCACCGCCG 61.941 60.000 0.00 0.00 40.39 6.46
2679 12036 0.459759 GTAGGTTGTAGCTCACCGCC 60.460 60.000 0.00 0.00 40.39 6.13
2680 12037 0.245539 TGTAGGTTGTAGCTCACCGC 59.754 55.000 0.00 0.00 39.57 5.68
2681 12038 2.540515 CATGTAGGTTGTAGCTCACCG 58.459 52.381 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.