AutoCloner

Multiple sequence alignment - TraesCS3D01G510400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G510400	chr3D	100.000	2223	0	0	1	2223	595287550	595285328	0.000000e+00	4106.0
1	TraesCS3D01G510400	chr3D	87.465	1077	108	20	940	2013	595303120	595304172	0.000000e+00	1216.0
2	TraesCS3D01G510400	chr3D	87.325	1002	103	19	937	1934	595674425	595675406	0.000000e+00	1125.0
3	TraesCS3D01G510400	chr3D	87.753	890	96	9	940	1820	595739116	595740001	0.000000e+00	1027.0
4	TraesCS3D01G510400	chr3D	89.103	780	79	5	956	1732	596097024	596096248	0.000000e+00	965.0
5	TraesCS3D01G510400	chr3D	86.788	878	99	13	940	1806	595705287	595706158	0.000000e+00	963.0
6	TraesCS3D01G510400	chr3D	84.897	437	43	9	491	924	595704809	595705225	1.150000e-113	420.0
7	TraesCS3D01G510400	chr3D	100.000	181	0	0	2495	2675	595285056	595284876	4.270000e-88	335.0
8	TraesCS3D01G510400	chr3D	85.241	332	35	4	491	812	595302447	595302774	1.990000e-86	329.0
9	TraesCS3D01G510400	chr3D	87.119	295	31	3	491	784	595673797	595674085	7.140000e-86	327.0
10	TraesCS3D01G510400	chr3D	80.508	472	34	31	491	945	595738653	595739083	2.590000e-80	309.0
11	TraesCS3D01G510400	chr3D	88.506	174	20	0	311	484	595738441	595738614	7.500000e-51	211.0
12	TraesCS3D01G510400	chr3D	81.507	292	21	12	1	269	595301797	595302078	2.700000e-50	209.0
13	TraesCS3D01G510400	chr3D	83.550	231	24	3	268	484	595673528	595673758	1.260000e-48	204.0
14	TraesCS3D01G510400	chr3D	82.759	232	23	6	268	484	595704543	595704772	9.770000e-45	191.0
15	TraesCS3D01G510400	chr3D	84.768	151	16	5	810	954	595674257	595674406	7.720000e-31	145.0
16	TraesCS3D01G510400	chr3D	80.541	185	21	6	485	657	596111459	596111278	7.770000e-26	128.0
17	TraesCS3D01G510400	chr3D	100.000	28	0	0	897	924	596111122	596111095	5.000000e-03	52.8
18	TraesCS3D01G510400	chr3A	93.778	1800	78	11	1	1778	726411755	726409968	0.000000e+00	2673.0
19	TraesCS3D01G510400	chr3A	87.755	882	97	7	940	1820	726515744	726516615	0.000000e+00	1020.0
20	TraesCS3D01G510400	chr3A	87.990	816	91	7	940	1753	726458284	726459094	0.000000e+00	957.0
21	TraesCS3D01G510400	chr3A	90.948	464	17	11	1779	2221	726409536	726409077	3.810000e-168	601.0
22	TraesCS3D01G510400	chr3A	82.167	443	42	19	491	924	726515269	726515683	1.970000e-91	346.0
23	TraesCS3D01G510400	chr3A	84.091	352	30	14	603	945	726457917	726458251	1.550000e-82	316.0
24	TraesCS3D01G510400	chr3A	90.909	121	9	1	2528	2646	726409076	726408956	7.660000e-36	161.0
25	TraesCS3D01G510400	chr3A	93.651	63	3	1	491	552	726457852	726457914	2.840000e-15	93.5
26	TraesCS3D01G510400	chr3B	87.636	922	98	7	940	1850	798648290	798649206	0.000000e+00	1057.0
27	TraesCS3D01G510400	chr3B	80.090	1110	152	36	937	2025	798639748	798640809	0.000000e+00	761.0
28	TraesCS3D01G510400	chr3B	84.389	442	40	13	491	924	798686163	798686583	8.920000e-110	407.0
29	TraesCS3D01G510400	chr3B	87.549	257	27	4	491	744	798647702	798647956	2.600000e-75	292.0
30	TraesCS3D01G510400	chr3B	84.407	295	32	7	201	484	799523218	799522927	7.290000e-71	278.0
31	TraesCS3D01G510400	chr3B	79.670	182	22	6	1925	2099	798689956	798690129	1.680000e-22	117.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G510400	chr3D	595284876	595287550	2674	True	2220.500000	4106	100.000000	1	2675	2	chr3D.!!$R2	2674
1	TraesCS3D01G510400	chr3D	596096248	596097024	776	True	965.000000	965	89.103000	956	1732	1	chr3D.!!$R1	776
2	TraesCS3D01G510400	chr3D	595301797	595304172	2375	False	584.666667	1216	84.737667	1	2013	3	chr3D.!!$F1	2012
3	TraesCS3D01G510400	chr3D	595704543	595706158	1615	False	524.666667	963	84.814667	268	1806	3	chr3D.!!$F3	1538
4	TraesCS3D01G510400	chr3D	595738441	595740001	1560	False	515.666667	1027	85.589000	311	1820	3	chr3D.!!$F4	1509
5	TraesCS3D01G510400	chr3D	595673528	595675406	1878	False	450.250000	1125	85.690500	268	1934	4	chr3D.!!$F2	1666
6	TraesCS3D01G510400	chr3A	726408956	726411755	2799	True	1145.000000	2673	91.878333	1	2646	3	chr3A.!!$R1	2645
7	TraesCS3D01G510400	chr3A	726515269	726516615	1346	False	683.000000	1020	84.961000	491	1820	2	chr3A.!!$F2	1329
8	TraesCS3D01G510400	chr3A	726457852	726459094	1242	False	455.500000	957	88.577333	491	1753	3	chr3A.!!$F1	1262
9	TraesCS3D01G510400	chr3B	798639748	798640809	1061	False	761.000000	761	80.090000	937	2025	1	chr3B.!!$F1	1088
10	TraesCS3D01G510400	chr3B	798647702	798649206	1504	False	674.500000	1057	87.592500	491	1850	2	chr3B.!!$F2	1359
11	TraesCS3D01G510400	chr3B	798686163	798690129	3966	False	262.000000	407	82.029500	491	2099	2	chr3B.!!$F3	1608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
38	39	3.007920	CTCCCTGGTCAGCCTGCT	61.008	66.667	0.0	0.0	35.27	4.24	F
1068	1904	2.457598	GTCCACTCATCAGACACCCTA	58.542	52.381	0.0	0.0	0.00	3.53	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1659	4922	1.311859	CAGCTCAGCAACCACAAAGA	58.688	50.0	0.00	0.0	0.0	2.52	R
2135	5873	0.107017	CCAATGGCAAGGACGAGGAT	60.107	55.0	3.43	0.0	0.0	3.24	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
38	39	3.007920	CTCCCTGGTCAGCCTGCT	61.008	66.667	0.00	0.00	35.27	4.24
39	40	3.324930	TCCCTGGTCAGCCTGCTG	61.325	66.667	12.91	12.91	44.86	4.41
42	43	4.031129	CTGGTCAGCCTGCTGCCT	62.031	66.667	23.50	0.00	43.31	4.75
111	121	5.700722	TGCTCTCATGGCAAATATCATTC	57.299	39.130	0.00	0.00	36.71	2.67
112	122	5.134661	TGCTCTCATGGCAAATATCATTCA	58.865	37.500	0.00	0.00	36.71	2.57
113	123	5.773176	TGCTCTCATGGCAAATATCATTCAT	59.227	36.000	0.00	0.00	36.71	2.57
114	124	6.093404	GCTCTCATGGCAAATATCATTCATG	58.907	40.000	0.00	0.00	34.89	3.07
115	125	6.072119	GCTCTCATGGCAAATATCATTCATGA	60.072	38.462	0.00	0.00	41.70	3.07
116	126	7.523216	GCTCTCATGGCAAATATCATTCATGAA	60.523	37.037	11.26	11.26	39.92	2.57
117	127	8.417273	TCTCATGGCAAATATCATTCATGAAT	57.583	30.769	15.36	15.36	39.92	2.57
241	272	3.786368	TGGTCATGAATTGTCCTGTCA	57.214	42.857	0.00	0.00	34.91	3.58
272	303	9.522804	CTCAGTATCTATTTGGTTCTACTGTTC	57.477	37.037	0.00	0.00	38.03	3.18
352	398	5.065090	TGTGCATTCATTTCTCTTATCCACG	59.935	40.000	0.00	0.00	0.00	4.94
402	459	5.474876	CAGCTGTCTTTGTAAATCTTTCCCT	59.525	40.000	5.25	0.00	0.00	4.20
434	491	5.624344	ATTCAGAGCTGTTTCAGTGAATG	57.376	39.130	6.36	0.12	35.16	2.67
442	499	4.557496	GCTGTTTCAGTGAATGTTTCCTCC	60.557	45.833	6.36	0.00	33.43	4.30
618	892	9.371136	ACAATTTGGCGAGTATATATACTGATG	57.629	33.333	26.51	17.26	43.27	3.07
802	1250	6.861065	TCAATTTACAGAACTGAGTGAACC	57.139	37.500	8.87	0.00	0.00	3.62
803	1251	5.465390	TCAATTTACAGAACTGAGTGAACCG	59.535	40.000	8.87	0.00	0.00	4.44
824	1441	9.755064	GAACCGTGCATGTATATTATTAATGAC	57.245	33.333	4.96	0.00	0.00	3.06
925	1687	7.484035	TTTCTCTTCTTGCTTCTACTGTTTC	57.516	36.000	0.00	0.00	0.00	2.78
984	1817	8.678199	TGTCTAACAATTGTTGATGTTTGTGTA	58.322	29.630	29.72	7.78	40.14	2.90
1068	1904	2.457598	GTCCACTCATCAGACACCCTA	58.542	52.381	0.00	0.00	0.00	3.53
1143	1980	2.516923	CAGCTAGAAGACAACCGTACG	58.483	52.381	8.69	8.69	0.00	3.67
1549	2390	3.237268	AGATCTACGAGAAGGATGGCT	57.763	47.619	0.00	0.00	0.00	4.75
1550	2391	4.374689	AGATCTACGAGAAGGATGGCTA	57.625	45.455	0.00	0.00	0.00	3.93
1659	4922	1.079819	CGTTGATCTGGTGCTCCGT	60.080	57.895	0.00	0.00	36.30	4.69
1741	5016	0.830444	TCCTTCCAGTAGTGGTGCGT	60.830	55.000	16.36	0.00	45.28	5.24
1853	5564	4.508461	TCAGCAAAACTACGTACTAGCA	57.492	40.909	0.00	0.00	0.00	3.49
1875	5586	7.978982	AGCAGTATCATTTAGCAGTTTGTTAG	58.021	34.615	0.00	0.00	0.00	2.34
1955	5670	4.723789	AGTCCCTGGATCTGTATTGTCATT	59.276	41.667	0.00	0.00	0.00	2.57
2054	5774	6.461509	CCCTTCTGCATACCCAAATATTTGTC	60.462	42.308	23.24	8.45	36.45	3.18
2112	5833	4.510038	AGTTGAAGAACCACATGAATGC	57.490	40.909	0.00	0.00	31.81	3.56
2116	5837	2.291209	AGAACCACATGAATGCCACA	57.709	45.000	0.00	0.00	0.00	4.17
2135	5873	4.701651	CCACATTGAGCTGGAATCAAGTTA	59.298	41.667	0.00	0.00	39.86	2.24
2150	5888	1.568504	AGTTATCCTCGTCCTTGCCA	58.431	50.000	0.00	0.00	0.00	4.92
2215	5954	1.274069	TGGAGGATGAGAAGGAGGCTT	60.274	52.381	0.00	0.00	0.00	4.35
2218	5957	2.503356	GAGGATGAGAAGGAGGCTTTGA	59.497	50.000	0.00	0.00	0.00	2.69
2219	5958	2.238395	AGGATGAGAAGGAGGCTTTGAC	59.762	50.000	0.00	0.00	0.00	3.18
2220	5959	2.238395	GGATGAGAAGGAGGCTTTGACT	59.762	50.000	0.00	0.00	0.00	3.41
2221	5960	2.847327	TGAGAAGGAGGCTTTGACTG	57.153	50.000	0.00	0.00	0.00	3.51
2222	5961	2.329267	TGAGAAGGAGGCTTTGACTGA	58.671	47.619	0.00	0.00	0.00	3.41
2512	6251	3.114616	CTTGTCGCGACCTGGCTG	61.115	66.667	34.34	14.78	0.00	4.85
2513	6252	3.865929	CTTGTCGCGACCTGGCTGT	62.866	63.158	34.34	0.00	0.00	4.40
2514	6253	4.662961	TGTCGCGACCTGGCTGTG	62.663	66.667	34.34	0.00	0.00	3.66
2564	6303	2.058675	CCGACAGGGGTGTCTTCTT	58.941	57.895	4.16	0.00	36.71	2.52
2565	6304	0.396811	CCGACAGGGGTGTCTTCTTT	59.603	55.000	4.16	0.00	36.71	2.52
2584	6323	4.343323	CGGTGGCCATGTGGTCCA	62.343	66.667	9.72	10.02	39.61	4.02
2646	6387	1.376553	GGAAGCTGCGCTCTTTCCT	60.377	57.895	21.89	3.94	38.25	3.36
2647	6388	1.365368	GGAAGCTGCGCTCTTTCCTC	61.365	60.000	21.89	9.42	38.25	3.71
2648	6389	1.365368	GAAGCTGCGCTCTTTCCTCC	61.365	60.000	9.73	0.00	38.25	4.30
2649	6390	3.191539	GCTGCGCTCTTTCCTCCG	61.192	66.667	9.73	0.00	0.00	4.63
2650	6391	3.191539	CTGCGCTCTTTCCTCCGC	61.192	66.667	9.73	0.00	45.99	5.54
2651	6392	3.655810	CTGCGCTCTTTCCTCCGCT	62.656	63.158	9.73	0.00	45.97	5.52
2652	6393	2.888051	GCGCTCTTTCCTCCGCTC	60.888	66.667	0.00	0.00	42.83	5.03
2653	6394	2.202810	CGCTCTTTCCTCCGCTCC	60.203	66.667	0.00	0.00	0.00	4.70
2654	6395	2.188207	GCTCTTTCCTCCGCTCCC	59.812	66.667	0.00	0.00	0.00	4.30
2655	6396	2.904131	CTCTTTCCTCCGCTCCCC	59.096	66.667	0.00	0.00	0.00	4.81
2656	6397	2.687566	TCTTTCCTCCGCTCCCCC	60.688	66.667	0.00	0.00	0.00	5.40
2657	6398	3.009115	CTTTCCTCCGCTCCCCCA	61.009	66.667	0.00	0.00	0.00	4.96
2658	6399	2.286121	TTTCCTCCGCTCCCCCAT	60.286	61.111	0.00	0.00	0.00	4.00
2659	6400	2.330924	CTTTCCTCCGCTCCCCCATC	62.331	65.000	0.00	0.00	0.00	3.51
2660	6401	4.880426	TCCTCCGCTCCCCCATCC	62.880	72.222	0.00	0.00	0.00	3.51
2661	6402	4.888325	CCTCCGCTCCCCCATCCT	62.888	72.222	0.00	0.00	0.00	3.24
2662	6403	3.554342	CTCCGCTCCCCCATCCTG	61.554	72.222	0.00	0.00	0.00	3.86
2665	6406	4.559063	CGCTCCCCCATCCTGCTG	62.559	72.222	0.00	0.00	0.00	4.41
2666	6407	4.201122	GCTCCCCCATCCTGCTGG	62.201	72.222	2.58	2.58	35.95	4.85
2667	6408	2.693864	CTCCCCCATCCTGCTGGT	60.694	66.667	9.73	0.00	34.23	4.00
2668	6409	3.016971	TCCCCCATCCTGCTGGTG	61.017	66.667	9.73	7.28	34.23	4.17
2669	6410	3.341629	CCCCCATCCTGCTGGTGT	61.342	66.667	9.73	0.00	34.23	4.16
2670	6411	2.273449	CCCCATCCTGCTGGTGTC	59.727	66.667	9.73	0.00	34.23	3.67
2671	6412	2.273449	CCCATCCTGCTGGTGTCC	59.727	66.667	9.73	0.00	34.23	4.02
2672	6413	2.304056	CCCATCCTGCTGGTGTCCT	61.304	63.158	9.73	0.00	34.23	3.85
2673	6414	1.687612	CCATCCTGCTGGTGTCCTT	59.312	57.895	9.73	0.00	34.23	3.36
2674	6415	0.679002	CCATCCTGCTGGTGTCCTTG	60.679	60.000	9.73	0.20	34.23	3.61

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
14	15	4.954118	TGACCAGGGAGCCCACGT	62.954	66.667	8.53	2.70	38.92	4.49
111	121	2.557056	GGCTGGATGGTCATGATTCATG	59.443	50.000	18.71	18.71	42.60	3.07
112	122	2.490351	GGGCTGGATGGTCATGATTCAT	60.490	50.000	12.44	12.44	0.00	2.57
113	123	1.133699	GGGCTGGATGGTCATGATTCA	60.134	52.381	0.00	1.03	0.00	2.57
114	124	1.133699	TGGGCTGGATGGTCATGATTC	60.134	52.381	0.00	0.00	0.00	2.52
115	125	0.928505	TGGGCTGGATGGTCATGATT	59.071	50.000	0.00	0.00	0.00	2.57
116	126	1.155323	ATGGGCTGGATGGTCATGAT	58.845	50.000	0.00	0.00	0.00	2.45
117	127	0.184211	CATGGGCTGGATGGTCATGA	59.816	55.000	0.00	0.00	37.87	3.07
241	272	7.372260	AGAACCAAATAGATACTGAGAGCAT	57.628	36.000	0.00	0.00	0.00	3.79
272	303	1.059913	GTCATGGGGGTCAGGATAGG	58.940	60.000	0.00	0.00	38.51	2.57
352	398	6.781138	TGAAAGGTAAATCGTGCATAATCAC	58.219	36.000	0.00	0.00	0.00	3.06
402	459	4.623932	ACAGCTCTGAATTTCAGTACCA	57.376	40.909	22.44	5.95	44.58	3.25
434	491	8.622157	GCTTATGAATTTTAGTAGGGAGGAAAC	58.378	37.037	0.00	0.00	0.00	2.78
442	499	8.492673	TGTGTGAGCTTATGAATTTTAGTAGG	57.507	34.615	0.00	0.00	0.00	3.18
578	830	4.277423	GCCAAATTGTATTATACCCTGCGT	59.723	41.667	0.00	0.00	0.00	5.24
618	892	7.148457	CCGTTTTTCTCTACTTTCCCTAATCAC	60.148	40.741	0.00	0.00	0.00	3.06
744	1018	3.690628	GGTGCCCGTTAATTAGTTGCTAA	59.309	43.478	0.00	0.00	0.00	3.09
754	1030	4.028825	AGACTAGTTAGGTGCCCGTTAAT	58.971	43.478	0.00	0.00	0.00	1.40
755	1031	3.434309	AGACTAGTTAGGTGCCCGTTAA	58.566	45.455	0.00	0.00	0.00	2.01
756	1032	3.019564	GAGACTAGTTAGGTGCCCGTTA	58.980	50.000	0.00	0.00	0.00	3.18
757	1033	1.823610	GAGACTAGTTAGGTGCCCGTT	59.176	52.381	0.00	0.00	0.00	4.44
802	1250	8.659491	AGCAGTCATTAATAATATACATGCACG	58.341	33.333	15.51	0.00	0.00	5.34
803	1251	9.979270	GAGCAGTCATTAATAATATACATGCAC	57.021	33.333	15.51	10.46	0.00	4.57
824	1441	4.818534	TGCAAAGTTAAGTCTTGAGCAG	57.181	40.909	0.00	0.00	35.74	4.24
860	1621	5.365403	TGTTTATACAGAAAAAGGTGCCG	57.635	39.130	0.00	0.00	0.00	5.69
925	1687	5.429957	GCTGTAGAAAGAGCCCATTATTG	57.570	43.478	0.00	0.00	36.01	1.90
984	1817	1.417517	TGCATTCCGGATGAGCTACAT	59.582	47.619	19.74	0.52	42.47	2.29
1068	1904	4.210331	GGATCTTTGCCTTGATGGTGTAT	58.790	43.478	0.00	0.00	38.35	2.29
1167	2004	2.014857	TGGAGGTCAATCGTAGAGTCG	58.985	52.381	0.00	0.00	43.63	4.18
1549	2390	1.557099	CGCTGCTGTATAGGGGGATA	58.443	55.000	0.00	0.00	0.00	2.59
1550	2391	1.831652	GCGCTGCTGTATAGGGGGAT	61.832	60.000	0.00	0.00	0.00	3.85
1659	4922	1.311859	CAGCTCAGCAACCACAAAGA	58.688	50.000	0.00	0.00	0.00	2.52
1853	5564	9.726438	AACTCTAACAAACTGCTAAATGATACT	57.274	29.630	0.00	0.00	0.00	2.12
1875	5586	5.581085	ACAGACTCAACACACTAACAAACTC	59.419	40.000	0.00	0.00	0.00	3.01
2025	5745	3.756082	TTGGGTATGCAGAAGGGAAAT	57.244	42.857	0.00	0.00	0.00	2.17
2026	5746	3.534357	TTTGGGTATGCAGAAGGGAAA	57.466	42.857	0.00	0.00	0.00	3.13
2027	5747	3.756082	ATTTGGGTATGCAGAAGGGAA	57.244	42.857	0.00	0.00	0.00	3.97
2028	5748	5.402054	AATATTTGGGTATGCAGAAGGGA	57.598	39.130	0.00	0.00	0.00	4.20
2031	5751	7.338800	AGACAAATATTTGGGTATGCAGAAG	57.661	36.000	27.43	3.04	42.34	2.85
2054	5774	6.703165	TGTCATAGATGATCGAAAACATGGAG	59.297	38.462	0.00	0.00	39.30	3.86
2112	5833	3.087031	ACTTGATTCCAGCTCAATGTGG	58.913	45.455	0.00	0.00	32.50	4.17
2116	5837	6.011122	AGGATAACTTGATTCCAGCTCAAT	57.989	37.500	0.00	0.00	32.50	2.57
2135	5873	0.107017	CCAATGGCAAGGACGAGGAT	60.107	55.000	3.43	0.00	0.00	3.24
2150	5888	2.066999	GCCGTCCTCCTCCTCCAAT	61.067	63.158	0.00	0.00	0.00	3.16
2182	5920	3.760035	CTCCACCACTCCCCGTCG	61.760	72.222	0.00	0.00	0.00	5.12
2495	6234	3.114616	CAGCCAGGTCGCGACAAG	61.115	66.667	37.26	27.80	0.00	3.16
2496	6235	3.923864	ACAGCCAGGTCGCGACAA	61.924	61.111	37.26	0.64	0.00	3.18
2497	6236	4.662961	CACAGCCAGGTCGCGACA	62.663	66.667	37.26	1.56	0.00	4.35
2517	6256	4.082523	ATGGTGGAGGACGGTGCG	62.083	66.667	0.00	0.00	0.00	5.34
2518	6257	2.125106	GATGGTGGAGGACGGTGC	60.125	66.667	0.00	0.00	0.00	5.01
2519	6258	2.584608	GGATGGTGGAGGACGGTG	59.415	66.667	0.00	0.00	0.00	4.94
2520	6259	2.687566	GGGATGGTGGAGGACGGT	60.688	66.667	0.00	0.00	0.00	4.83
2521	6260	3.480133	GGGGATGGTGGAGGACGG	61.480	72.222	0.00	0.00	0.00	4.79
2522	6261	3.480133	GGGGGATGGTGGAGGACG	61.480	72.222	0.00	0.00	0.00	4.79
2549	6288	0.396811	CGGAAAGAAGACACCCCTGT	59.603	55.000	0.00	0.00	0.00	4.00
2550	6289	0.321653	CCGGAAAGAAGACACCCCTG	60.322	60.000	0.00	0.00	0.00	4.45
2556	6295	1.072505	GGCCACCGGAAAGAAGACA	59.927	57.895	9.46	0.00	0.00	3.41
2564	6303	3.561120	GACCACATGGCCACCGGAA	62.561	63.158	20.88	0.00	39.32	4.30
2565	6304	4.028490	GACCACATGGCCACCGGA	62.028	66.667	20.88	0.00	39.32	5.14
2583	6322	2.436646	GGTCGGCCATGGACACTG	60.437	66.667	20.22	4.20	36.12	3.66
2584	6323	4.082523	CGGTCGGCCATGGACACT	62.083	66.667	20.22	0.00	36.12	3.55
2648	6389	4.559063	CAGCAGGATGGGGGAGCG	62.559	72.222	0.00	0.00	35.86	5.03
2649	6390	4.201122	CCAGCAGGATGGGGGAGC	62.201	72.222	0.00	0.00	36.64	4.70
2650	6391	2.693864	ACCAGCAGGATGGGGGAG	60.694	66.667	8.61	0.00	45.25	4.30
2651	6392	3.016971	CACCAGCAGGATGGGGGA	61.017	66.667	8.61	0.00	45.25	4.81
2654	6395	1.856539	AAGGACACCAGCAGGATGGG	61.857	60.000	8.61	0.00	45.25	4.00
2655	6396	0.679002	CAAGGACACCAGCAGGATGG	60.679	60.000	0.35	1.29	46.47	3.51
2656	6397	2.864114	CAAGGACACCAGCAGGATG	58.136	57.895	0.35	0.00	38.69	3.51

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.