Multiple sequence alignment - TraesCS3D01G509600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G509600 chr3D 100.000 2755 0 0 1 2755 594959445 594956691 0.000000e+00 5088.0
1 TraesCS3D01G509600 chr3D 89.266 531 39 4 1 530 593969311 593968798 0.000000e+00 649.0
2 TraesCS3D01G509600 chr3B 89.701 1437 97 20 532 1947 798409416 798408010 0.000000e+00 1786.0
3 TraesCS3D01G509600 chr3B 93.200 250 11 6 2444 2688 798406735 798406487 2.020000e-96 363.0
4 TraesCS3D01G509600 chr3B 90.000 150 15 0 1863 2012 798407414 798407265 7.780000e-46 195.0
5 TraesCS3D01G509600 chr3B 97.333 75 2 0 2681 2755 798405422 798405348 8.010000e-26 128.0
6 TraesCS3D01G509600 chr3A 92.017 927 45 10 1008 1927 725907246 725906342 0.000000e+00 1275.0
7 TraesCS3D01G509600 chr3A 82.278 395 34 11 529 912 725908853 725908484 2.660000e-80 309.0
8 TraesCS3D01G509600 chr3A 94.949 99 5 0 912 1010 725907382 725907284 3.670000e-34 156.0
9 TraesCS3D01G509600 chr3A 95.455 88 4 0 1963 2050 725906340 725906253 1.030000e-29 141.0
10 TraesCS3D01G509600 chr3A 82.609 161 24 4 531 688 50384227 50384068 3.700000e-29 139.0
11 TraesCS3D01G509600 chr7B 84.116 1001 102 31 1016 1998 113445600 113444639 0.000000e+00 915.0
12 TraesCS3D01G509600 chr7D 87.947 755 71 15 1007 1749 151542659 151541913 0.000000e+00 872.0
13 TraesCS3D01G509600 chr7D 83.660 153 23 2 531 681 133307737 133307889 2.860000e-30 143.0
14 TraesCS3D01G509600 chr7D 83.125 160 24 3 531 688 507792503 507792661 2.860000e-30 143.0
15 TraesCS3D01G509600 chr7D 79.070 215 26 16 1802 2012 151527750 151527551 2.230000e-26 130.0
16 TraesCS3D01G509600 chr7D 85.149 101 9 2 2354 2448 268836811 268836911 6.280000e-17 99.0
17 TraesCS3D01G509600 chr7A 87.467 750 71 12 1014 1749 151328161 151327421 0.000000e+00 843.0
18 TraesCS3D01G509600 chr7A 82.716 162 24 4 530 688 442980903 442981063 1.030000e-29 141.0
19 TraesCS3D01G509600 chr7A 79.781 183 24 8 1831 2011 151327394 151327223 1.340000e-23 121.0
20 TraesCS3D01G509600 chr7A 84.158 101 10 2 2354 2448 295212735 295212835 2.920000e-15 93.5
21 TraesCS3D01G509600 chr5D 91.847 601 36 8 1012 1603 515094362 515093766 0.000000e+00 826.0
22 TraesCS3D01G509600 chr5D 88.427 674 55 12 1007 1665 515039727 515039062 0.000000e+00 791.0
23 TraesCS3D01G509600 chr2D 91.013 612 44 6 1008 1609 534129333 534129943 0.000000e+00 815.0
24 TraesCS3D01G509600 chr5A 88.433 683 57 12 1007 1670 643312123 643311444 0.000000e+00 804.0
25 TraesCS3D01G509600 chr4A 84.785 815 67 31 1047 1854 639977520 639978284 0.000000e+00 765.0
26 TraesCS3D01G509600 chr2A 85.093 161 21 3 530 688 133680235 133680076 7.900000e-36 161.0
27 TraesCS3D01G509600 chr5B 82.609 161 24 4 531 688 594097928 594097769 3.700000e-29 139.0
28 TraesCS3D01G509600 chr4B 82.609 161 24 4 531 688 466819904 466820063 3.700000e-29 139.0
29 TraesCS3D01G509600 chr1A 75.655 267 39 9 2207 2448 554933551 554933816 2.900000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G509600 chr3D 594956691 594959445 2754 True 5088.00 5088 100.00000 1 2755 1 chr3D.!!$R2 2754
1 TraesCS3D01G509600 chr3D 593968798 593969311 513 True 649.00 649 89.26600 1 530 1 chr3D.!!$R1 529
2 TraesCS3D01G509600 chr3B 798405348 798409416 4068 True 618.00 1786 92.55850 532 2755 4 chr3B.!!$R1 2223
3 TraesCS3D01G509600 chr3A 725906253 725908853 2600 True 470.25 1275 91.17475 529 2050 4 chr3A.!!$R2 1521
4 TraesCS3D01G509600 chr7B 113444639 113445600 961 True 915.00 915 84.11600 1016 1998 1 chr7B.!!$R1 982
5 TraesCS3D01G509600 chr7D 151541913 151542659 746 True 872.00 872 87.94700 1007 1749 1 chr7D.!!$R2 742
6 TraesCS3D01G509600 chr7A 151327223 151328161 938 True 482.00 843 83.62400 1014 2011 2 chr7A.!!$R1 997
7 TraesCS3D01G509600 chr5D 515093766 515094362 596 True 826.00 826 91.84700 1012 1603 1 chr5D.!!$R2 591
8 TraesCS3D01G509600 chr5D 515039062 515039727 665 True 791.00 791 88.42700 1007 1665 1 chr5D.!!$R1 658
9 TraesCS3D01G509600 chr2D 534129333 534129943 610 False 815.00 815 91.01300 1008 1609 1 chr2D.!!$F1 601
10 TraesCS3D01G509600 chr5A 643311444 643312123 679 True 804.00 804 88.43300 1007 1670 1 chr5A.!!$R1 663
11 TraesCS3D01G509600 chr4A 639977520 639978284 764 False 765.00 765 84.78500 1047 1854 1 chr4A.!!$F1 807

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
154 155 0.107703 TCCATCATGAAGTGCCGGTC 60.108 55.0 1.9 0.00 0.00 4.79 F
161 162 0.400213 TGAAGTGCCGGTCCTTCAAT 59.600 50.0 25.9 4.56 42.92 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1125 2300 0.112412 ACCTGAAAACCCTCGCCATT 59.888 50.0 0.0 0.0 0.0 3.16 R
2115 4000 0.319211 CCACTCTACGCAACGGACAA 60.319 55.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.618702 TCAATTTCAAATAAAACATGTGGCAT 57.381 26.923 0.00 0.00 0.00 4.40
53 54 2.359850 GGAGTGACCATTGCGGCA 60.360 61.111 0.00 0.00 39.03 5.69
69 70 2.029918 GCGGCAAGAGTTCCAAAGATTT 60.030 45.455 0.00 0.00 0.00 2.17
72 73 4.215399 CGGCAAGAGTTCCAAAGATTTACA 59.785 41.667 0.00 0.00 0.00 2.41
87 88 8.954350 CAAAGATTTACAATCTCCAGACAATCT 58.046 33.333 0.00 0.00 32.35 2.40
115 116 0.963962 CACCACATCAGCAAAGCCTT 59.036 50.000 0.00 0.00 0.00 4.35
118 119 1.614903 CCACATCAGCAAAGCCTTGAA 59.385 47.619 0.00 0.00 34.14 2.69
134 135 5.030936 GCCTTGAAGATTTGCGAAGATAAC 58.969 41.667 0.00 0.00 0.00 1.89
142 143 6.294473 AGATTTGCGAAGATAACTCCATCAT 58.706 36.000 0.00 0.00 0.00 2.45
144 145 4.670896 TGCGAAGATAACTCCATCATGA 57.329 40.909 0.00 0.00 0.00 3.07
150 151 4.712476 AGATAACTCCATCATGAAGTGCC 58.288 43.478 0.00 0.00 0.00 5.01
151 152 1.742761 AACTCCATCATGAAGTGCCG 58.257 50.000 0.00 0.00 0.00 5.69
154 155 0.107703 TCCATCATGAAGTGCCGGTC 60.108 55.000 1.90 0.00 0.00 4.79
160 161 1.833606 TGAAGTGCCGGTCCTTCAA 59.166 52.632 25.90 14.87 42.92 2.69
161 162 0.400213 TGAAGTGCCGGTCCTTCAAT 59.600 50.000 25.90 4.56 42.92 2.57
169 170 3.118075 TGCCGGTCCTTCAATGATCATAA 60.118 43.478 9.04 0.00 0.00 1.90
187 188 1.421480 AAGATCCGTTACCCCTAGGC 58.579 55.000 2.05 0.00 36.11 3.93
221 222 1.098050 GCACCTAACAGGGCAGAATG 58.902 55.000 0.00 0.00 40.58 2.67
270 271 4.840401 TTTTTGCTCATCATAGACGACG 57.160 40.909 0.00 0.00 0.00 5.12
271 272 2.492019 TTGCTCATCATAGACGACGG 57.508 50.000 0.00 0.00 0.00 4.79
272 273 1.389555 TGCTCATCATAGACGACGGT 58.610 50.000 0.00 0.00 0.00 4.83
273 274 1.749063 TGCTCATCATAGACGACGGTT 59.251 47.619 0.00 0.00 0.00 4.44
274 275 2.120232 GCTCATCATAGACGACGGTTG 58.880 52.381 0.00 0.00 0.00 3.77
275 276 2.479730 GCTCATCATAGACGACGGTTGT 60.480 50.000 0.00 0.00 0.00 3.32
279 280 4.820173 TCATCATAGACGACGGTTGTATCT 59.180 41.667 0.00 0.00 0.00 1.98
311 312 6.567687 TTTAACAAAATTCTCATCTGGCGA 57.432 33.333 0.00 0.00 0.00 5.54
333 334 0.409092 TCCAACCATGTCCAGGCAAT 59.591 50.000 0.00 0.00 0.00 3.56
363 364 0.475906 GCTGCTTGGGGATATCCAGT 59.524 55.000 23.27 0.00 38.17 4.00
371 372 1.751924 GGGGATATCCAGTAGCGCTAG 59.248 57.143 23.27 7.08 37.91 3.42
379 380 1.535015 CCAGTAGCGCTAGTGCTTCTC 60.535 57.143 36.34 22.99 44.46 2.87
389 390 2.663826 AGTGCTTCTCGAGTGAATCC 57.336 50.000 13.13 0.00 0.00 3.01
427 428 6.294342 CGGATCATATTTTTCACCATCATGCT 60.294 38.462 0.00 0.00 0.00 3.79
450 451 1.462283 CATCTGTTGCGTGAACTCCAG 59.538 52.381 1.90 0.00 35.37 3.86
466 467 3.513912 ACTCCAGATCGACCACATTACAA 59.486 43.478 0.00 0.00 0.00 2.41
503 505 1.144708 TCCTTTGCAGTGAACATGGGA 59.855 47.619 0.00 0.00 0.00 4.37
514 516 6.406177 GCAGTGAACATGGGATCACATAAAAT 60.406 38.462 22.46 0.00 46.07 1.82
519 521 5.517924 ACATGGGATCACATAAAATGTCCA 58.482 37.500 10.88 0.00 42.70 4.02
523 525 5.163426 TGGGATCACATAAAATGTCCATTGC 60.163 40.000 0.00 0.00 42.70 3.56
536 538 1.929494 TCCATTGCCCAAGTCCCTATT 59.071 47.619 0.00 0.00 0.00 1.73
556 562 1.621992 AGCACCTTCGAGAGACTGAA 58.378 50.000 0.00 0.00 41.84 3.02
572 578 3.470709 ACTGAACCGGCATATCATCTTG 58.529 45.455 0.00 0.00 0.00 3.02
574 580 4.129380 CTGAACCGGCATATCATCTTGAA 58.871 43.478 0.00 0.00 0.00 2.69
581 587 6.545666 ACCGGCATATCATCTTGAAATTTACA 59.454 34.615 0.00 0.00 0.00 2.41
592 598 8.918658 CATCTTGAAATTTACAAAGTCACCATG 58.081 33.333 0.00 0.00 0.00 3.66
595 601 5.835819 TGAAATTTACAAAGTCACCATGGGA 59.164 36.000 18.09 7.80 0.00 4.37
602 608 1.136329 AGTCACCATGGGAGCCTTGT 61.136 55.000 18.09 0.00 0.00 3.16
615 621 1.628846 AGCCTTGTAGTCAACGGGAAT 59.371 47.619 0.00 0.00 0.00 3.01
620 626 3.587797 TGTAGTCAACGGGAATGTCTC 57.412 47.619 0.00 0.00 0.00 3.36
621 627 2.894765 TGTAGTCAACGGGAATGTCTCA 59.105 45.455 0.00 0.00 0.00 3.27
623 629 3.703001 AGTCAACGGGAATGTCTCATT 57.297 42.857 0.00 0.00 0.00 2.57
627 633 4.396166 GTCAACGGGAATGTCTCATTTCAT 59.604 41.667 3.64 0.00 0.00 2.57
633 639 6.432783 ACGGGAATGTCTCATTTCATTAAACA 59.567 34.615 3.64 0.00 34.92 2.83
641 647 7.329962 TGTCTCATTTCATTAAACACGTATCGT 59.670 33.333 0.00 0.00 42.36 3.73
683 689 3.508793 CAGAAAAATGTGAGCACCAGGAT 59.491 43.478 0.00 0.00 0.00 3.24
684 690 3.508793 AGAAAAATGTGAGCACCAGGATG 59.491 43.478 0.00 0.00 0.00 3.51
685 691 2.592102 AAATGTGAGCACCAGGATGT 57.408 45.000 0.00 0.00 0.00 3.06
770 776 1.279527 TTAACGTCTGCCTTCGCACG 61.280 55.000 0.00 0.00 41.12 5.34
773 779 3.482783 GTCTGCCTTCGCACGAGC 61.483 66.667 0.00 0.00 41.12 5.03
778 784 2.556287 CCTTCGCACGAGCCAAAC 59.444 61.111 0.00 0.00 37.52 2.93
912 928 0.537188 TCCCTGGCGAAGAAGATGAC 59.463 55.000 0.00 0.00 0.00 3.06
935 2053 1.975363 GACACGAGTAGGACCGACCG 61.975 65.000 11.91 11.91 44.74 4.79
1308 2487 1.048724 CCCCAATCCGGCTGACTCTA 61.049 60.000 0.00 0.00 0.00 2.43
1376 2564 0.946221 ACCTCAAGAGCTTTGACGCG 60.946 55.000 3.53 3.53 34.40 6.01
1427 2615 2.191641 GACCTCATCCTGGCTGCC 59.808 66.667 12.87 12.87 0.00 4.85
1466 2654 2.354805 GGGATTGCTCGACCTTACTTGT 60.355 50.000 0.00 0.00 0.00 3.16
1636 2832 5.391523 GGCAATGTTCGTTGAAGTAATGCTA 60.392 40.000 8.68 0.00 0.00 3.49
1637 2833 5.734498 GCAATGTTCGTTGAAGTAATGCTAG 59.266 40.000 8.68 0.00 0.00 3.42
1638 2834 4.921470 TGTTCGTTGAAGTAATGCTAGC 57.079 40.909 8.10 8.10 0.00 3.42
1687 2889 4.878439 TGTATGTCTACGTTTCAGCACTT 58.122 39.130 0.00 0.00 0.00 3.16
1688 2890 4.921515 TGTATGTCTACGTTTCAGCACTTC 59.078 41.667 0.00 0.00 0.00 3.01
1728 2930 6.864685 TCGTAATCGCTGTAATTATTCCGAAT 59.135 34.615 0.00 0.00 36.96 3.34
1731 2933 7.490962 AATCGCTGTAATTATTCCGAATTCA 57.509 32.000 6.22 0.00 31.51 2.57
1749 2951 9.158364 CCGAATTCAAAACATCGTTATATTCTG 57.842 33.333 6.22 0.00 33.65 3.02
1786 2988 2.736978 CCTATCGTGATCAGTGCTCAC 58.263 52.381 15.61 15.61 39.69 3.51
1787 2989 2.544694 CCTATCGTGATCAGTGCTCACC 60.545 54.545 18.82 4.52 39.89 4.02
1977 3862 7.642669 AGACAATGTTGATATTTTCGGCTATG 58.357 34.615 0.00 0.00 0.00 2.23
1998 3883 8.971321 GCTATGTTGAAATAGCCATATTGTTTG 58.029 33.333 5.12 0.00 46.22 2.93
2050 3935 8.970691 AAATCTGTCGACTAATTTTCATTTGG 57.029 30.769 17.92 0.00 0.00 3.28
2051 3936 5.938322 TCTGTCGACTAATTTTCATTTGGC 58.062 37.500 17.92 0.00 0.00 4.52
2067 3952 5.475220 TCATTTGGCTTCAGGTCGAATTTTA 59.525 36.000 0.00 0.00 31.76 1.52
2069 3954 4.963276 TGGCTTCAGGTCGAATTTTATG 57.037 40.909 0.00 0.00 31.69 1.90
2072 3957 4.636206 GGCTTCAGGTCGAATTTTATGACT 59.364 41.667 0.00 0.00 31.69 3.41
2084 3969 8.116136 TCGAATTTTATGACTGTTCGATCATTG 58.884 33.333 4.67 0.00 43.69 2.82
2097 3982 2.993220 CGATCATTGTCACGAACCTCAA 59.007 45.455 0.00 0.00 0.00 3.02
2101 3986 1.484227 TTGTCACGAACCTCAACGCG 61.484 55.000 3.53 3.53 0.00 6.01
2117 4002 3.459027 CGCAGCAGCAGCATTTTG 58.541 55.556 10.77 0.00 45.49 2.44
2119 4004 1.342082 CGCAGCAGCAGCATTTTGTC 61.342 55.000 10.77 0.00 45.49 3.18
2120 4005 1.012486 GCAGCAGCAGCATTTTGTCC 61.012 55.000 4.63 0.00 45.49 4.02
2121 4006 0.731514 CAGCAGCAGCATTTTGTCCG 60.732 55.000 3.17 0.00 45.49 4.79
2122 4007 1.174712 AGCAGCAGCATTTTGTCCGT 61.175 50.000 3.17 0.00 45.49 4.69
2123 4008 0.318955 GCAGCAGCATTTTGTCCGTT 60.319 50.000 0.00 0.00 41.58 4.44
2124 4009 1.411394 CAGCAGCATTTTGTCCGTTG 58.589 50.000 0.00 0.00 0.00 4.10
2125 4010 0.318955 AGCAGCATTTTGTCCGTTGC 60.319 50.000 0.00 0.00 35.34 4.17
2126 4011 1.608093 GCAGCATTTTGTCCGTTGCG 61.608 55.000 0.00 0.00 40.00 4.85
2127 4012 0.317770 CAGCATTTTGTCCGTTGCGT 60.318 50.000 0.00 0.00 40.00 5.24
2128 4013 1.069568 CAGCATTTTGTCCGTTGCGTA 60.070 47.619 0.00 0.00 40.00 4.42
2129 4014 1.196808 AGCATTTTGTCCGTTGCGTAG 59.803 47.619 0.00 0.00 40.00 3.51
2130 4015 1.195900 GCATTTTGTCCGTTGCGTAGA 59.804 47.619 0.00 0.00 0.00 2.59
2131 4016 2.724839 GCATTTTGTCCGTTGCGTAGAG 60.725 50.000 0.00 0.00 0.00 2.43
2132 4017 2.228138 TTTTGTCCGTTGCGTAGAGT 57.772 45.000 0.00 0.00 0.00 3.24
2133 4018 1.493772 TTTGTCCGTTGCGTAGAGTG 58.506 50.000 0.00 0.00 0.00 3.51
2134 4019 0.319211 TTGTCCGTTGCGTAGAGTGG 60.319 55.000 0.00 0.00 0.00 4.00
2135 4020 2.092882 GTCCGTTGCGTAGAGTGGC 61.093 63.158 0.00 0.00 0.00 5.01
2136 4021 2.048597 CCGTTGCGTAGAGTGGCA 60.049 61.111 0.00 0.00 37.39 4.92
2137 4022 2.094659 CCGTTGCGTAGAGTGGCAG 61.095 63.158 0.00 0.00 40.75 4.85
2138 4023 2.094659 CGTTGCGTAGAGTGGCAGG 61.095 63.158 0.00 0.00 40.75 4.85
2139 4024 1.004918 GTTGCGTAGAGTGGCAGGT 60.005 57.895 0.00 0.00 40.75 4.00
2140 4025 1.005037 TTGCGTAGAGTGGCAGGTG 60.005 57.895 0.00 0.00 40.75 4.00
2141 4026 2.815647 GCGTAGAGTGGCAGGTGC 60.816 66.667 0.00 0.00 41.14 5.01
2142 4027 2.973899 CGTAGAGTGGCAGGTGCT 59.026 61.111 1.26 0.00 41.70 4.40
2143 4028 1.293498 CGTAGAGTGGCAGGTGCTT 59.707 57.895 1.26 0.00 41.70 3.91
2144 4029 0.320771 CGTAGAGTGGCAGGTGCTTT 60.321 55.000 1.26 0.00 41.70 3.51
2145 4030 1.067142 CGTAGAGTGGCAGGTGCTTTA 60.067 52.381 1.26 0.00 41.70 1.85
2146 4031 2.622436 GTAGAGTGGCAGGTGCTTTAG 58.378 52.381 1.26 0.00 41.70 1.85
2147 4032 1.059913 AGAGTGGCAGGTGCTTTAGT 58.940 50.000 1.26 0.00 41.70 2.24
2148 4033 1.421646 AGAGTGGCAGGTGCTTTAGTT 59.578 47.619 1.26 0.00 41.70 2.24
2149 4034 2.637872 AGAGTGGCAGGTGCTTTAGTTA 59.362 45.455 1.26 0.00 41.70 2.24
2150 4035 3.264450 AGAGTGGCAGGTGCTTTAGTTAT 59.736 43.478 1.26 0.00 41.70 1.89
2200 4085 2.358737 CCACCTGGTCTTGACGCC 60.359 66.667 0.00 0.00 0.00 5.68
2202 4087 2.915659 ACCTGGTCTTGACGCCGA 60.916 61.111 0.00 0.00 0.00 5.54
2203 4088 2.432628 CCTGGTCTTGACGCCGAC 60.433 66.667 0.00 0.00 0.00 4.79
2206 4091 2.432628 GGTCTTGACGCCGACCTG 60.433 66.667 0.00 0.00 44.90 4.00
2207 4092 2.338984 GTCTTGACGCCGACCTGT 59.661 61.111 0.00 0.00 0.00 4.00
2208 4093 1.300697 GTCTTGACGCCGACCTGTT 60.301 57.895 0.00 0.00 0.00 3.16
2209 4094 0.878961 GTCTTGACGCCGACCTGTTT 60.879 55.000 0.00 0.00 0.00 2.83
2210 4095 0.179067 TCTTGACGCCGACCTGTTTT 60.179 50.000 0.00 0.00 0.00 2.43
2211 4096 0.234884 CTTGACGCCGACCTGTTTTC 59.765 55.000 0.00 0.00 0.00 2.29
2212 4097 0.462225 TTGACGCCGACCTGTTTTCA 60.462 50.000 0.00 0.00 0.00 2.69
2213 4098 0.462225 TGACGCCGACCTGTTTTCAA 60.462 50.000 0.00 0.00 0.00 2.69
2214 4099 0.658897 GACGCCGACCTGTTTTCAAA 59.341 50.000 0.00 0.00 0.00 2.69
2215 4100 1.064357 GACGCCGACCTGTTTTCAAAA 59.936 47.619 0.00 0.00 0.00 2.44
2216 4101 1.202211 ACGCCGACCTGTTTTCAAAAC 60.202 47.619 6.02 6.02 0.00 2.43
2217 4102 1.202200 CGCCGACCTGTTTTCAAAACA 60.202 47.619 14.96 14.96 0.00 2.83
2218 4103 2.190161 GCCGACCTGTTTTCAAAACAC 58.810 47.619 11.83 2.06 0.00 3.32
2219 4104 2.416162 GCCGACCTGTTTTCAAAACACA 60.416 45.455 11.83 0.00 0.00 3.72
2220 4105 3.175929 CCGACCTGTTTTCAAAACACAC 58.824 45.455 11.83 5.62 0.00 3.82
2221 4106 3.175929 CGACCTGTTTTCAAAACACACC 58.824 45.455 11.83 3.20 0.00 4.16
2222 4107 3.119637 CGACCTGTTTTCAAAACACACCT 60.120 43.478 11.83 0.00 0.00 4.00
2223 4108 4.421058 GACCTGTTTTCAAAACACACCTC 58.579 43.478 11.83 1.04 0.00 3.85
2224 4109 3.194755 ACCTGTTTTCAAAACACACCTCC 59.805 43.478 11.83 0.00 0.00 4.30
2232 4117 0.179056 AAACACACCTCCACTCACCG 60.179 55.000 0.00 0.00 0.00 4.94
2244 4129 0.396811 ACTCACCGTTTTCTCCCAGG 59.603 55.000 0.00 0.00 0.00 4.45
2245 4130 0.396811 CTCACCGTTTTCTCCCAGGT 59.603 55.000 0.00 0.00 35.24 4.00
2246 4131 0.395312 TCACCGTTTTCTCCCAGGTC 59.605 55.000 0.00 0.00 32.04 3.85
2247 4132 0.949105 CACCGTTTTCTCCCAGGTCG 60.949 60.000 0.00 0.00 32.04 4.79
2248 4133 1.117142 ACCGTTTTCTCCCAGGTCGA 61.117 55.000 0.00 0.00 0.00 4.20
2251 4136 0.669625 GTTTTCTCCCAGGTCGACGG 60.670 60.000 9.92 5.96 0.00 4.79
2254 4139 2.989173 TTCTCCCAGGTCGACGGTGT 62.989 60.000 9.92 0.00 0.00 4.16
2255 4140 1.676635 CTCCCAGGTCGACGGTGTA 60.677 63.158 9.92 0.00 0.00 2.90
2256 4141 1.228521 TCCCAGGTCGACGGTGTAA 60.229 57.895 9.92 0.00 0.00 2.41
2334 4223 4.430765 CACTTACGCCGCCCGAGT 62.431 66.667 0.65 0.00 41.02 4.18
2335 4224 4.125695 ACTTACGCCGCCCGAGTC 62.126 66.667 0.65 0.00 41.02 3.36
2353 4242 3.050275 GACGCAAGCCACCTCACC 61.050 66.667 0.00 0.00 45.62 4.02
2372 4261 4.424566 GCGTCGGCGGGAGTGTTA 62.425 66.667 13.05 0.00 38.78 2.41
2373 4262 2.202570 CGTCGGCGGGAGTGTTAG 60.203 66.667 7.21 0.00 0.00 2.34
2383 4272 1.592223 GAGTGTTAGTCTGCCGGCT 59.408 57.895 29.70 9.99 0.00 5.52
2400 4289 1.301677 GCTGAGGGAGCCAAACTTCG 61.302 60.000 0.00 0.00 42.54 3.79
2412 4301 1.923204 CAAACTTCGAGCTCATCTCCG 59.077 52.381 15.40 0.00 38.62 4.63
2415 4304 0.453793 CTTCGAGCTCATCTCCGTGT 59.546 55.000 15.40 0.00 38.62 4.49
2416 4305 0.452184 TTCGAGCTCATCTCCGTGTC 59.548 55.000 15.40 0.00 38.62 3.67
2428 4514 1.052124 TCCGTGTCCACCTTCCACTT 61.052 55.000 0.00 0.00 0.00 3.16
2432 4518 1.003718 GTCCACCTTCCACTTCCGG 60.004 63.158 0.00 0.00 0.00 5.14
2434 4520 2.359975 CACCTTCCACTTCCGGCC 60.360 66.667 0.00 0.00 0.00 6.13
2435 4521 4.016706 ACCTTCCACTTCCGGCCG 62.017 66.667 21.04 21.04 0.00 6.13
2493 4579 3.553109 GCCTAATCGGGGCCTAATC 57.447 57.895 0.84 0.00 43.49 1.75
2501 4587 4.513406 ATCGGGGCCTAATCAGTAAAAA 57.487 40.909 0.84 0.00 0.00 1.94
2542 4628 1.971167 GTGAAGCACCGGCCAATGA 60.971 57.895 0.00 0.00 42.56 2.57
2544 4630 1.212751 GAAGCACCGGCCAATGAAC 59.787 57.895 0.00 0.00 42.56 3.18
2573 4659 8.185505 TGTAAAGAAAAACTGCGACAGTAAAAT 58.814 29.630 11.92 1.57 44.62 1.82
2577 4663 7.136772 AGAAAAACTGCGACAGTAAAATTACC 58.863 34.615 11.92 1.56 44.62 2.85
2611 4698 6.763355 AGATAAGAGAATATCGGTGCATGTT 58.237 36.000 0.00 0.00 37.37 2.71
2644 4735 6.599356 AAAATTAAACCCACAGATACACCC 57.401 37.500 0.00 0.00 0.00 4.61
2655 4746 4.215399 CACAGATACACCCGTTTGTTTCAT 59.785 41.667 6.79 0.00 31.82 2.57
2664 4755 7.269316 ACACCCGTTTGTTTCATTAGAAAAAT 58.731 30.769 0.00 0.00 44.75 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.155099 CACTCCGTTATGCCACATGTTTTA 59.845 41.667 0.00 0.00 0.00 1.52
25 26 0.036765 GGTCACTCCGTTATGCCACA 60.037 55.000 0.00 0.00 0.00 4.17
29 30 1.064060 GCAATGGTCACTCCGTTATGC 59.936 52.381 0.00 0.00 42.93 3.14
32 33 0.390603 CCGCAATGGTCACTCCGTTA 60.391 55.000 0.00 0.00 42.93 3.18
40 41 0.537143 AACTCTTGCCGCAATGGTCA 60.537 50.000 6.19 0.00 41.21 4.02
53 54 7.944554 TGGAGATTGTAAATCTTTGGAACTCTT 59.055 33.333 4.10 0.00 0.00 2.85
98 99 1.250328 TCAAGGCTTTGCTGATGTGG 58.750 50.000 3.19 0.00 34.21 4.17
115 116 5.487433 TGGAGTTATCTTCGCAAATCTTCA 58.513 37.500 0.00 0.00 0.00 3.02
118 119 5.674525 TGATGGAGTTATCTTCGCAAATCT 58.325 37.500 0.00 0.00 0.00 2.40
134 135 0.107508 ACCGGCACTTCATGATGGAG 60.108 55.000 12.76 0.00 0.00 3.86
144 145 0.400213 TCATTGAAGGACCGGCACTT 59.600 50.000 10.68 10.68 0.00 3.16
150 151 6.718454 GATCTTATGATCATTGAAGGACCG 57.282 41.667 14.65 0.00 46.20 4.79
169 170 0.826672 CGCCTAGGGGTAACGGATCT 60.827 60.000 17.58 0.00 37.60 2.75
184 185 0.605589 GCTTGGTGTAAACCTCGCCT 60.606 55.000 3.10 0.00 36.54 5.52
187 188 0.872388 GGTGCTTGGTGTAAACCTCG 59.128 55.000 3.10 0.00 0.00 4.63
257 258 4.912187 CAGATACAACCGTCGTCTATGATG 59.088 45.833 0.00 0.00 0.00 3.07
258 259 4.579340 ACAGATACAACCGTCGTCTATGAT 59.421 41.667 0.00 0.00 0.00 2.45
259 260 3.943381 ACAGATACAACCGTCGTCTATGA 59.057 43.478 0.00 0.00 0.00 2.15
260 261 4.035684 CACAGATACAACCGTCGTCTATG 58.964 47.826 0.00 0.00 0.00 2.23
261 262 3.693085 ACACAGATACAACCGTCGTCTAT 59.307 43.478 0.00 0.00 0.00 1.98
262 263 3.076621 ACACAGATACAACCGTCGTCTA 58.923 45.455 0.00 0.00 0.00 2.59
263 264 1.884579 ACACAGATACAACCGTCGTCT 59.115 47.619 0.00 0.00 0.00 4.18
264 265 2.342910 ACACAGATACAACCGTCGTC 57.657 50.000 0.00 0.00 0.00 4.20
265 266 2.034939 TCAACACAGATACAACCGTCGT 59.965 45.455 0.00 0.00 0.00 4.34
266 267 2.668250 TCAACACAGATACAACCGTCG 58.332 47.619 0.00 0.00 0.00 5.12
267 268 5.607119 AAATCAACACAGATACAACCGTC 57.393 39.130 0.00 0.00 0.00 4.79
268 269 7.012515 TGTTAAAATCAACACAGATACAACCGT 59.987 33.333 0.00 0.00 33.55 4.83
269 270 7.356540 TGTTAAAATCAACACAGATACAACCG 58.643 34.615 0.00 0.00 33.55 4.44
270 271 9.522804 TTTGTTAAAATCAACACAGATACAACC 57.477 29.630 0.00 0.00 38.12 3.77
311 312 2.078452 CCTGGACATGGTTGGAGGT 58.922 57.895 0.00 0.00 0.00 3.85
371 372 1.135373 TCGGATTCACTCGAGAAGCAC 60.135 52.381 21.68 7.24 35.70 4.40
379 380 3.484229 GCAAACTCAATCGGATTCACTCG 60.484 47.826 0.00 0.00 0.00 4.18
389 390 1.368641 TGATCCGGCAAACTCAATCG 58.631 50.000 0.00 0.00 0.00 3.34
427 428 2.143122 GAGTTCACGCAACAGATGGAA 58.857 47.619 1.06 0.00 37.48 3.53
450 451 8.539770 AGATTATCATTGTAATGTGGTCGATC 57.460 34.615 4.67 0.00 37.65 3.69
466 467 5.698545 GCAAAGGAACGAGCTAGATTATCAT 59.301 40.000 0.00 0.00 0.00 2.45
503 505 4.715792 TGGGCAATGGACATTTTATGTGAT 59.284 37.500 0.00 0.00 45.03 3.06
514 516 1.076549 GGGACTTGGGCAATGGACA 59.923 57.895 0.00 0.00 0.00 4.02
519 521 2.513738 TGCTAATAGGGACTTGGGCAAT 59.486 45.455 0.00 0.00 41.75 3.56
523 525 2.127708 AGGTGCTAATAGGGACTTGGG 58.872 52.381 0.00 0.00 41.75 4.12
536 538 2.488545 GTTCAGTCTCTCGAAGGTGCTA 59.511 50.000 0.00 0.00 0.00 3.49
556 562 6.545666 TGTAAATTTCAAGATGATATGCCGGT 59.454 34.615 1.90 0.00 0.00 5.28
572 578 6.339587 TCCCATGGTGACTTTGTAAATTTC 57.660 37.500 11.73 0.00 0.00 2.17
574 580 4.220602 GCTCCCATGGTGACTTTGTAAATT 59.779 41.667 11.73 0.00 0.00 1.82
581 587 0.779997 AAGGCTCCCATGGTGACTTT 59.220 50.000 15.10 2.65 41.14 2.66
588 594 0.911769 TGACTACAAGGCTCCCATGG 59.088 55.000 4.14 4.14 0.00 3.66
592 598 0.391263 CCGTTGACTACAAGGCTCCC 60.391 60.000 0.00 0.00 39.57 4.30
595 601 1.053424 TTCCCGTTGACTACAAGGCT 58.947 50.000 0.00 0.00 39.57 4.58
602 608 4.819105 AATGAGACATTCCCGTTGACTA 57.181 40.909 0.00 0.00 0.00 2.59
615 621 7.329962 ACGATACGTGTTTAATGAAATGAGACA 59.670 33.333 0.00 0.00 39.18 3.41
620 626 5.894266 CCGACGATACGTGTTTAATGAAATG 59.106 40.000 0.00 0.00 41.37 2.32
621 627 5.806502 TCCGACGATACGTGTTTAATGAAAT 59.193 36.000 0.00 0.00 41.37 2.17
623 629 4.731720 TCCGACGATACGTGTTTAATGAA 58.268 39.130 0.00 0.00 41.37 2.57
627 633 5.159925 TGATTTCCGACGATACGTGTTTAA 58.840 37.500 0.00 0.00 41.37 1.52
633 639 3.703286 TCATGATTTCCGACGATACGT 57.297 42.857 0.00 0.00 45.10 3.57
641 647 8.518430 TTTCTGGATTATTTCATGATTTCCGA 57.482 30.769 0.00 0.00 0.00 4.55
826 836 4.337060 CGGTCCGATGGCGCGATA 62.337 66.667 12.10 0.00 35.83 2.92
912 928 0.649475 CGGTCCTACTCGTGTCGTAG 59.351 60.000 0.00 0.00 35.30 3.51
977 2095 3.468140 GGACGGCTAGGGTGGGAC 61.468 72.222 0.00 0.00 0.00 4.46
1090 2265 2.158986 AGGATCATCTTCTTCACGCCTG 60.159 50.000 0.00 0.00 0.00 4.85
1096 2271 4.468868 TCTTGAGCAGGATCATCTTCTTCA 59.531 41.667 0.00 0.00 0.00 3.02
1125 2300 0.112412 ACCTGAAAACCCTCGCCATT 59.888 50.000 0.00 0.00 0.00 3.16
1163 2338 3.069980 GCGGATGGTCTGCGACTCT 62.070 63.158 8.26 0.00 41.93 3.24
1347 2535 4.821589 CTTGAGGTCCTCGGCGGC 62.822 72.222 14.34 0.00 32.35 6.53
1376 2564 0.388263 GGTCGACCTTGACGAACTCC 60.388 60.000 27.64 0.00 42.99 3.85
1427 2615 4.286297 TCCCTTGATGTTGAGGTAGTTG 57.714 45.455 0.00 0.00 0.00 3.16
1466 2654 3.007182 TGATCATGTCTGCAACAGTCTGA 59.993 43.478 6.91 6.93 42.37 3.27
1759 2961 4.387256 GCACTGATCACGATAGGCTATTTC 59.613 45.833 8.71 0.00 43.77 2.17
1775 2977 2.470990 TCATAGGTGGTGAGCACTGAT 58.529 47.619 14.88 5.53 0.00 2.90
1909 3791 9.956720 CCTTCAACTTTTCAATATTATGCCTAG 57.043 33.333 0.00 0.00 0.00 3.02
1922 3807 7.678947 TTTCAAATTTGCCTTCAACTTTTCA 57.321 28.000 13.54 0.00 34.25 2.69
1977 3862 6.033341 TCGCAAACAATATGGCTATTTCAAC 58.967 36.000 0.00 0.00 0.00 3.18
2033 3918 5.801947 CCTGAAGCCAAATGAAAATTAGTCG 59.198 40.000 0.00 0.00 0.00 4.18
2050 3935 5.122396 ACAGTCATAAAATTCGACCTGAAGC 59.878 40.000 0.00 0.00 40.65 3.86
2051 3936 6.727824 ACAGTCATAAAATTCGACCTGAAG 57.272 37.500 0.00 0.00 40.65 3.02
2067 3952 3.614176 CGTGACAATGATCGAACAGTCAT 59.386 43.478 16.95 7.13 38.16 3.06
2069 3954 3.242518 TCGTGACAATGATCGAACAGTC 58.757 45.455 0.82 4.97 0.00 3.51
2084 3969 2.844146 CGCGTTGAGGTTCGTGAC 59.156 61.111 0.00 0.00 39.45 3.67
2093 3978 4.440987 CTGCTGCTGCGCGTTGAG 62.441 66.667 8.43 2.46 43.34 3.02
2101 3986 1.012486 GGACAAAATGCTGCTGCTGC 61.012 55.000 22.51 22.51 40.48 5.25
2105 3990 1.411394 CAACGGACAAAATGCTGCTG 58.589 50.000 0.00 0.00 0.00 4.41
2115 4000 0.319211 CCACTCTACGCAACGGACAA 60.319 55.000 0.00 0.00 0.00 3.18
2116 4001 1.287815 CCACTCTACGCAACGGACA 59.712 57.895 0.00 0.00 0.00 4.02
2117 4002 2.092882 GCCACTCTACGCAACGGAC 61.093 63.158 0.00 0.00 0.00 4.79
2119 4004 2.048597 TGCCACTCTACGCAACGG 60.049 61.111 0.00 0.00 30.46 4.44
2120 4005 2.094659 CCTGCCACTCTACGCAACG 61.095 63.158 0.00 0.00 33.87 4.10
2121 4006 1.004918 ACCTGCCACTCTACGCAAC 60.005 57.895 0.00 0.00 33.87 4.17
2122 4007 1.005037 CACCTGCCACTCTACGCAA 60.005 57.895 0.00 0.00 33.87 4.85
2123 4008 2.656646 CACCTGCCACTCTACGCA 59.343 61.111 0.00 0.00 0.00 5.24
2124 4009 2.788191 AAGCACCTGCCACTCTACGC 62.788 60.000 0.00 0.00 43.38 4.42
2125 4010 0.320771 AAAGCACCTGCCACTCTACG 60.321 55.000 0.00 0.00 43.38 3.51
2126 4011 2.028020 ACTAAAGCACCTGCCACTCTAC 60.028 50.000 0.00 0.00 43.38 2.59
2127 4012 2.257207 ACTAAAGCACCTGCCACTCTA 58.743 47.619 0.00 0.00 43.38 2.43
2128 4013 1.059913 ACTAAAGCACCTGCCACTCT 58.940 50.000 0.00 0.00 43.38 3.24
2129 4014 1.897560 AACTAAAGCACCTGCCACTC 58.102 50.000 0.00 0.00 43.38 3.51
2130 4015 3.721087 ATAACTAAAGCACCTGCCACT 57.279 42.857 0.00 0.00 43.38 4.00
2131 4016 4.783764 AAATAACTAAAGCACCTGCCAC 57.216 40.909 0.00 0.00 43.38 5.01
2132 4017 5.799827 AAAAATAACTAAAGCACCTGCCA 57.200 34.783 0.00 0.00 43.38 4.92
2191 4076 0.179067 AAAACAGGTCGGCGTCAAGA 60.179 50.000 6.85 0.00 0.00 3.02
2197 4082 1.202200 TGTTTTGAAAACAGGTCGGCG 60.202 47.619 18.60 0.00 0.00 6.46
2200 4085 3.119637 AGGTGTGTTTTGAAAACAGGTCG 60.120 43.478 22.41 0.00 0.00 4.79
2202 4087 3.194755 GGAGGTGTGTTTTGAAAACAGGT 59.805 43.478 22.41 8.46 0.00 4.00
2203 4088 3.194542 TGGAGGTGTGTTTTGAAAACAGG 59.805 43.478 22.41 0.00 0.00 4.00
2204 4089 4.082245 AGTGGAGGTGTGTTTTGAAAACAG 60.082 41.667 22.41 0.00 0.00 3.16
2205 4090 3.829601 AGTGGAGGTGTGTTTTGAAAACA 59.170 39.130 18.60 18.60 0.00 2.83
2206 4091 4.082463 TGAGTGGAGGTGTGTTTTGAAAAC 60.082 41.667 13.55 13.55 0.00 2.43
2207 4092 4.082463 GTGAGTGGAGGTGTGTTTTGAAAA 60.082 41.667 0.00 0.00 0.00 2.29
2208 4093 3.442273 GTGAGTGGAGGTGTGTTTTGAAA 59.558 43.478 0.00 0.00 0.00 2.69
2209 4094 3.013921 GTGAGTGGAGGTGTGTTTTGAA 58.986 45.455 0.00 0.00 0.00 2.69
2210 4095 2.639065 GTGAGTGGAGGTGTGTTTTGA 58.361 47.619 0.00 0.00 0.00 2.69
2211 4096 1.676006 GGTGAGTGGAGGTGTGTTTTG 59.324 52.381 0.00 0.00 0.00 2.44
2212 4097 1.745827 CGGTGAGTGGAGGTGTGTTTT 60.746 52.381 0.00 0.00 0.00 2.43
2213 4098 0.179056 CGGTGAGTGGAGGTGTGTTT 60.179 55.000 0.00 0.00 0.00 2.83
2214 4099 1.335132 ACGGTGAGTGGAGGTGTGTT 61.335 55.000 0.00 0.00 0.00 3.32
2215 4100 1.335132 AACGGTGAGTGGAGGTGTGT 61.335 55.000 0.00 0.00 0.00 3.72
2216 4101 0.179056 AAACGGTGAGTGGAGGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
2217 4102 0.544697 AAAACGGTGAGTGGAGGTGT 59.455 50.000 0.00 0.00 0.00 4.16
2218 4103 1.202651 AGAAAACGGTGAGTGGAGGTG 60.203 52.381 0.00 0.00 0.00 4.00
2219 4104 1.070289 GAGAAAACGGTGAGTGGAGGT 59.930 52.381 0.00 0.00 0.00 3.85
2220 4105 1.608283 GGAGAAAACGGTGAGTGGAGG 60.608 57.143 0.00 0.00 0.00 4.30
2221 4106 1.608283 GGGAGAAAACGGTGAGTGGAG 60.608 57.143 0.00 0.00 0.00 3.86
2222 4107 0.395312 GGGAGAAAACGGTGAGTGGA 59.605 55.000 0.00 0.00 0.00 4.02
2223 4108 0.107831 TGGGAGAAAACGGTGAGTGG 59.892 55.000 0.00 0.00 0.00 4.00
2224 4109 1.512926 CTGGGAGAAAACGGTGAGTG 58.487 55.000 0.00 0.00 0.00 3.51
2232 4117 0.669625 CCGTCGACCTGGGAGAAAAC 60.670 60.000 10.58 0.00 0.00 2.43
2284 4173 4.659172 CAAGGTTGGGGGCTCGCA 62.659 66.667 0.00 0.00 0.00 5.10
2303 4192 0.465278 TAAGTGCACTGTGCTTGCCA 60.465 50.000 30.43 9.89 45.31 4.92
2306 4195 0.384725 GCGTAAGTGCACTGTGCTTG 60.385 55.000 30.43 15.58 40.82 4.01
2334 4223 3.611674 TGAGGTGGCTTGCGTCGA 61.612 61.111 0.00 0.00 0.00 4.20
2335 4224 3.414700 GTGAGGTGGCTTGCGTCG 61.415 66.667 0.00 0.00 0.00 5.12
2372 4261 4.704103 TCCCTCAGCCGGCAGACT 62.704 66.667 31.54 4.11 0.00 3.24
2373 4262 4.154347 CTCCCTCAGCCGGCAGAC 62.154 72.222 31.54 0.00 0.00 3.51
2383 4272 0.321671 CTCGAAGTTTGGCTCCCTCA 59.678 55.000 0.00 0.00 0.00 3.86
2400 4289 0.179124 GTGGACACGGAGATGAGCTC 60.179 60.000 6.82 6.82 43.17 4.09
2412 4301 0.602905 CGGAAGTGGAAGGTGGACAC 60.603 60.000 0.00 0.00 35.43 3.67
2415 4304 2.890766 GCCGGAAGTGGAAGGTGGA 61.891 63.158 5.05 0.00 0.00 4.02
2416 4305 2.359975 GCCGGAAGTGGAAGGTGG 60.360 66.667 5.05 0.00 0.00 4.61
2454 4540 3.506067 GCACAGTGTTAACCAATAAGCCT 59.494 43.478 2.48 0.00 0.00 4.58
2463 4549 2.676342 CCGATTAGGCACAGTGTTAACC 59.324 50.000 2.48 0.00 0.00 2.85
2493 4579 3.252215 TGAGCAACCGATGGTTTTTACTG 59.748 43.478 0.00 0.00 44.33 2.74
2501 4587 1.686355 TGTTTTGAGCAACCGATGGT 58.314 45.000 0.00 0.00 43.97 3.55
2542 4628 5.353123 TGTCGCAGTTTTTCTTTACAGAGTT 59.647 36.000 0.00 0.00 0.00 3.01
2544 4630 5.006746 ACTGTCGCAGTTTTTCTTTACAGAG 59.993 40.000 0.00 0.00 42.59 3.35
2602 4689 6.843069 ATTTTTGTAGTGAAAACATGCACC 57.157 33.333 0.00 0.00 35.67 5.01
2611 4698 8.750298 TCTGTGGGTTTAATTTTTGTAGTGAAA 58.250 29.630 0.00 0.00 0.00 2.69
2655 4746 7.589958 TGGCCTTTGAAGTACATTTTTCTAA 57.410 32.000 3.32 0.00 0.00 2.10
2664 4755 6.777213 TTTAGTTTTGGCCTTTGAAGTACA 57.223 33.333 3.32 0.00 0.00 2.90
2726 5889 0.441533 CTGCTTCGATCATATGGCGC 59.558 55.000 0.00 0.00 0.00 6.53
2731 5894 5.762825 AATTGTTGCTGCTTCGATCATAT 57.237 34.783 0.00 0.00 0.00 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.