Multiple sequence alignment - TraesCS3D01G509200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G509200 chr3D 100.000 3693 0 0 1568 5260 594889231 594892923 0.000000e+00 6820.0
1 TraesCS3D01G509200 chr3D 100.000 1341 0 0 1 1341 594887664 594889004 0.000000e+00 2477.0
2 TraesCS3D01G509200 chr3D 81.319 819 118 19 163 959 594868266 594869071 2.670000e-177 632.0
3 TraesCS3D01G509200 chr3D 85.345 348 22 12 949 1294 594869475 594869795 3.040000e-87 333.0
4 TraesCS3D01G509200 chr3D 97.661 171 4 0 1 171 246830702 246830532 1.430000e-75 294.0
5 TraesCS3D01G509200 chr3D 96.610 177 5 1 1 176 59494096 59494272 5.150000e-75 292.0
6 TraesCS3D01G509200 chr3A 92.006 2139 114 18 2555 4643 725839563 725841694 0.000000e+00 2950.0
7 TraesCS3D01G509200 chr3A 93.478 874 54 1 1683 2556 725838664 725839534 0.000000e+00 1295.0
8 TraesCS3D01G509200 chr3A 92.343 431 23 8 915 1341 725838113 725838537 5.830000e-169 604.0
9 TraesCS3D01G509200 chr3A 82.353 425 42 22 4716 5124 725841715 725842122 6.520000e-89 339.0
10 TraesCS3D01G509200 chr3A 77.590 415 79 7 1873 2278 725839667 725840076 6.810000e-59 239.0
11 TraesCS3D01G509200 chr3B 91.574 1258 67 12 2555 3774 798393777 798395033 0.000000e+00 1700.0
12 TraesCS3D01G509200 chr3B 87.436 1178 97 20 3769 4925 798395153 798396300 0.000000e+00 1308.0
13 TraesCS3D01G509200 chr3B 91.045 938 77 5 1568 2499 798392564 798393500 0.000000e+00 1260.0
14 TraesCS3D01G509200 chr3B 90.278 432 18 14 925 1341 798392107 798392529 1.290000e-150 544.0
15 TraesCS3D01G509200 chr3B 78.271 428 79 7 1855 2273 798393864 798394286 4.040000e-66 263.0
16 TraesCS3D01G509200 chr3B 95.522 67 3 0 2490 2556 798393685 798393751 2.000000e-19 108.0
17 TraesCS3D01G509200 chr3B 89.286 56 5 1 4933 4987 660327683 660327628 9.450000e-08 69.4
18 TraesCS3D01G509200 chr7D 98.810 168 2 0 1 168 74632763 74632930 3.080000e-77 300.0
19 TraesCS3D01G509200 chr7D 97.688 173 3 1 1 173 35641937 35641766 3.980000e-76 296.0
20 TraesCS3D01G509200 chr7D 89.655 58 5 1 4985 5041 19311236 19311293 7.310000e-09 73.1
21 TraesCS3D01G509200 chr5D 98.235 170 3 0 1 170 411882553 411882722 1.110000e-76 298.0
22 TraesCS3D01G509200 chr5D 97.661 171 4 0 1 171 202920568 202920398 1.430000e-75 294.0
23 TraesCS3D01G509200 chr5D 96.067 178 6 1 1 178 509120936 509121112 6.660000e-74 289.0
24 TraesCS3D01G509200 chr4D 98.788 165 2 0 1 165 334194659 334194823 1.430000e-75 294.0
25 TraesCS3D01G509200 chr4D 91.579 95 5 3 3191 3284 379147186 379147278 1.540000e-25 128.0
26 TraesCS3D01G509200 chr1D 95.055 182 9 0 1 182 430648044 430647863 2.400000e-73 287.0
27 TraesCS3D01G509200 chr1A 91.753 97 6 2 3189 3285 351605441 351605535 3.300000e-27 134.0
28 TraesCS3D01G509200 chr6B 90.196 102 7 3 3187 3286 13827624 13827524 4.270000e-26 130.0
29 TraesCS3D01G509200 chr5A 93.258 89 4 2 3198 3285 450750706 450750793 4.270000e-26 130.0
30 TraesCS3D01G509200 chr5B 88.288 111 8 5 3179 3286 62940429 62940321 1.540000e-25 128.0
31 TraesCS3D01G509200 chr6D 89.320 103 6 5 3192 3290 65054557 65054658 1.990000e-24 124.0
32 TraesCS3D01G509200 chr2A 87.850 107 8 4 3182 3287 654910223 654910325 2.570000e-23 121.0
33 TraesCS3D01G509200 chr6A 100.000 38 0 0 1023 1060 304901111 304901074 2.630000e-08 71.3
34 TraesCS3D01G509200 chr4B 100.000 38 0 0 1023 1060 359900570 359900533 2.630000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G509200 chr3D 594887664 594892923 5259 False 4648.500000 6820 100.000 1 5260 2 chr3D.!!$F3 5259
1 TraesCS3D01G509200 chr3D 594868266 594869795 1529 False 482.500000 632 83.332 163 1294 2 chr3D.!!$F2 1131
2 TraesCS3D01G509200 chr3A 725838113 725842122 4009 False 1085.400000 2950 87.554 915 5124 5 chr3A.!!$F1 4209
3 TraesCS3D01G509200 chr3B 798392107 798396300 4193 False 863.833333 1700 89.021 925 4925 6 chr3B.!!$F1 4000

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
338 339 0.032952 TTGACGCGTCTACCTTTGCT 59.967 50.000 36.27 0.0 0.00 3.91 F
1115 1580 0.105709 CCTTCCTCCTCCTCCTCCTC 60.106 65.000 0.00 0.0 0.00 3.71 F
1759 2242 0.676466 TTGGCCACGGCTTAGTCATG 60.676 55.000 3.88 0.0 41.60 3.07 F
1763 2246 1.070134 GCCACGGCTTAGTCATGGATA 59.930 52.381 2.09 0.0 38.26 2.59 F
3172 3916 0.685097 GTGCAGGTGGTCAGGAAGTA 59.315 55.000 0.00 0.0 0.00 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1889 2376 0.319083 ATCGACCACAACTAACGGCA 59.681 50.0 0.00 0.0 0.00 5.69 R
3094 3830 0.784778 GACAGTGTGCAACGTAGAGC 59.215 55.0 0.00 0.0 42.39 4.09 R
3101 3837 1.668419 AAGGTCTGACAGTGTGCAAC 58.332 50.0 10.38 0.0 37.35 4.17 R
3452 4212 2.065993 ACTTACTACACAGCACTGCG 57.934 50.0 0.00 0.0 0.00 5.18 R
4655 5572 0.036010 ACTGTCCAGATTTCCTGCCG 60.036 55.0 0.40 0.0 41.57 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.426024 TCCATCACAACTAGACGTAGGC 59.574 50.000 0.00 0.00 0.00 3.93
22 23 2.427453 CCATCACAACTAGACGTAGGCT 59.573 50.000 0.00 0.00 0.00 4.58
23 24 3.119101 CCATCACAACTAGACGTAGGCTT 60.119 47.826 0.00 0.00 0.00 4.35
24 25 4.495422 CATCACAACTAGACGTAGGCTTT 58.505 43.478 0.00 0.00 0.00 3.51
25 26 4.595762 TCACAACTAGACGTAGGCTTTT 57.404 40.909 0.00 0.00 0.00 2.27
26 27 5.710513 TCACAACTAGACGTAGGCTTTTA 57.289 39.130 0.00 0.00 0.00 1.52
27 28 5.464168 TCACAACTAGACGTAGGCTTTTAC 58.536 41.667 0.00 0.00 0.00 2.01
28 29 4.624452 CACAACTAGACGTAGGCTTTTACC 59.376 45.833 0.00 0.00 0.00 2.85
29 30 4.525874 ACAACTAGACGTAGGCTTTTACCT 59.474 41.667 0.00 0.00 44.31 3.08
30 31 5.011431 ACAACTAGACGTAGGCTTTTACCTT 59.989 40.000 0.00 0.00 41.50 3.50
31 32 5.321959 ACTAGACGTAGGCTTTTACCTTC 57.678 43.478 0.00 0.00 41.50 3.46
32 33 4.768968 ACTAGACGTAGGCTTTTACCTTCA 59.231 41.667 0.00 0.00 41.50 3.02
33 34 4.820894 AGACGTAGGCTTTTACCTTCAT 57.179 40.909 0.00 0.00 41.50 2.57
34 35 4.756502 AGACGTAGGCTTTTACCTTCATC 58.243 43.478 0.00 0.00 41.50 2.92
35 36 3.518590 ACGTAGGCTTTTACCTTCATCG 58.481 45.455 0.00 0.00 41.50 3.84
36 37 3.056322 ACGTAGGCTTTTACCTTCATCGT 60.056 43.478 0.00 0.00 41.50 3.73
37 38 4.158394 ACGTAGGCTTTTACCTTCATCGTA 59.842 41.667 0.00 0.00 41.50 3.43
38 39 5.104374 CGTAGGCTTTTACCTTCATCGTAA 58.896 41.667 0.00 0.00 41.50 3.18
39 40 5.231568 CGTAGGCTTTTACCTTCATCGTAAG 59.768 44.000 0.00 0.00 41.50 2.34
44 45 4.878878 CCTTCATCGTAAGGGGCC 57.121 61.111 0.00 0.00 42.08 5.80
45 46 1.227556 CCTTCATCGTAAGGGGCCG 60.228 63.158 0.00 0.00 42.08 6.13
46 47 1.682451 CCTTCATCGTAAGGGGCCGA 61.682 60.000 0.00 0.00 42.08 5.54
47 48 0.177141 CTTCATCGTAAGGGGCCGAA 59.823 55.000 0.00 0.00 36.57 4.30
48 49 0.108041 TTCATCGTAAGGGGCCGAAC 60.108 55.000 0.00 0.00 36.57 3.95
49 50 0.974010 TCATCGTAAGGGGCCGAACT 60.974 55.000 0.00 0.00 36.57 3.01
50 51 0.748450 CATCGTAAGGGGCCGAACTA 59.252 55.000 0.00 0.00 36.57 2.24
51 52 1.038280 ATCGTAAGGGGCCGAACTAG 58.962 55.000 0.00 0.00 36.57 2.57
52 53 0.323725 TCGTAAGGGGCCGAACTAGT 60.324 55.000 0.00 0.00 38.47 2.57
53 54 1.064758 TCGTAAGGGGCCGAACTAGTA 60.065 52.381 0.00 0.00 38.47 1.82
54 55 1.959282 CGTAAGGGGCCGAACTAGTAT 59.041 52.381 0.00 0.00 0.00 2.12
55 56 3.149196 CGTAAGGGGCCGAACTAGTATA 58.851 50.000 0.00 0.00 0.00 1.47
56 57 3.569701 CGTAAGGGGCCGAACTAGTATAA 59.430 47.826 0.00 0.00 0.00 0.98
57 58 4.037923 CGTAAGGGGCCGAACTAGTATAAA 59.962 45.833 0.00 0.00 0.00 1.40
58 59 5.451798 CGTAAGGGGCCGAACTAGTATAAAA 60.452 44.000 0.00 0.00 0.00 1.52
59 60 4.412796 AGGGGCCGAACTAGTATAAAAC 57.587 45.455 0.00 0.00 0.00 2.43
60 61 4.035814 AGGGGCCGAACTAGTATAAAACT 58.964 43.478 0.00 0.00 42.62 2.66
61 62 4.100653 AGGGGCCGAACTAGTATAAAACTC 59.899 45.833 0.00 0.00 39.80 3.01
62 63 4.047142 GGGCCGAACTAGTATAAAACTCG 58.953 47.826 0.00 0.00 39.80 4.18
63 64 3.488678 GGCCGAACTAGTATAAAACTCGC 59.511 47.826 0.00 0.00 39.80 5.03
64 65 4.357996 GCCGAACTAGTATAAAACTCGCT 58.642 43.478 0.00 0.00 39.80 4.93
65 66 4.802563 GCCGAACTAGTATAAAACTCGCTT 59.197 41.667 0.00 0.00 39.80 4.68
66 67 5.276254 GCCGAACTAGTATAAAACTCGCTTG 60.276 44.000 0.00 0.00 39.80 4.01
67 68 5.276254 CCGAACTAGTATAAAACTCGCTTGC 60.276 44.000 0.00 0.00 39.80 4.01
68 69 5.552104 CGAACTAGTATAAAACTCGCTTGCG 60.552 44.000 8.87 8.87 39.80 4.85
69 70 4.741342 ACTAGTATAAAACTCGCTTGCGT 58.259 39.130 14.70 0.00 39.80 5.24
70 71 4.797349 ACTAGTATAAAACTCGCTTGCGTC 59.203 41.667 14.70 0.00 39.80 5.19
71 72 2.928116 AGTATAAAACTCGCTTGCGTCC 59.072 45.455 14.70 0.00 30.33 4.79
72 73 1.084289 ATAAAACTCGCTTGCGTCCC 58.916 50.000 14.70 0.00 0.00 4.46
73 74 0.034337 TAAAACTCGCTTGCGTCCCT 59.966 50.000 14.70 0.69 0.00 4.20
74 75 0.818040 AAAACTCGCTTGCGTCCCTT 60.818 50.000 14.70 2.76 0.00 3.95
75 76 1.507141 AAACTCGCTTGCGTCCCTTG 61.507 55.000 14.70 3.00 0.00 3.61
76 77 2.357517 CTCGCTTGCGTCCCTTGT 60.358 61.111 14.70 0.00 0.00 3.16
77 78 2.357034 TCGCTTGCGTCCCTTGTC 60.357 61.111 14.70 0.00 0.00 3.18
78 79 3.423154 CGCTTGCGTCCCTTGTCC 61.423 66.667 6.86 0.00 0.00 4.02
79 80 3.423154 GCTTGCGTCCCTTGTCCG 61.423 66.667 0.00 0.00 0.00 4.79
83 84 2.668550 GCGTCCCTTGTCCGCTTT 60.669 61.111 0.00 0.00 43.81 3.51
84 85 1.375013 GCGTCCCTTGTCCGCTTTA 60.375 57.895 0.00 0.00 43.81 1.85
85 86 0.952010 GCGTCCCTTGTCCGCTTTAA 60.952 55.000 0.00 0.00 43.81 1.52
86 87 0.794473 CGTCCCTTGTCCGCTTTAAC 59.206 55.000 0.00 0.00 0.00 2.01
87 88 1.162698 GTCCCTTGTCCGCTTTAACC 58.837 55.000 0.00 0.00 0.00 2.85
88 89 0.037160 TCCCTTGTCCGCTTTAACCC 59.963 55.000 0.00 0.00 0.00 4.11
89 90 0.963856 CCCTTGTCCGCTTTAACCCC 60.964 60.000 0.00 0.00 0.00 4.95
90 91 0.037734 CCTTGTCCGCTTTAACCCCT 59.962 55.000 0.00 0.00 0.00 4.79
91 92 1.546998 CCTTGTCCGCTTTAACCCCTT 60.547 52.381 0.00 0.00 0.00 3.95
92 93 2.235891 CTTGTCCGCTTTAACCCCTTT 58.764 47.619 0.00 0.00 0.00 3.11
93 94 3.414269 CTTGTCCGCTTTAACCCCTTTA 58.586 45.455 0.00 0.00 0.00 1.85
94 95 3.505480 TGTCCGCTTTAACCCCTTTAA 57.495 42.857 0.00 0.00 0.00 1.52
95 96 3.414269 TGTCCGCTTTAACCCCTTTAAG 58.586 45.455 0.00 0.00 31.11 1.85
96 97 3.181441 TGTCCGCTTTAACCCCTTTAAGT 60.181 43.478 0.00 0.00 31.11 2.24
97 98 3.822735 GTCCGCTTTAACCCCTTTAAGTT 59.177 43.478 0.00 0.00 31.11 2.66
98 99 5.003160 GTCCGCTTTAACCCCTTTAAGTTA 58.997 41.667 0.00 0.00 31.11 2.24
99 100 5.473162 GTCCGCTTTAACCCCTTTAAGTTAA 59.527 40.000 0.00 0.00 36.82 2.01
100 101 5.473162 TCCGCTTTAACCCCTTTAAGTTAAC 59.527 40.000 0.00 0.00 37.98 2.01
101 102 5.335897 CCGCTTTAACCCCTTTAAGTTAACC 60.336 44.000 0.88 0.00 37.98 2.85
102 103 5.335897 CGCTTTAACCCCTTTAAGTTAACCC 60.336 44.000 0.88 0.00 37.98 4.11
103 104 5.335897 GCTTTAACCCCTTTAAGTTAACCCG 60.336 44.000 0.88 0.00 37.98 5.28
104 105 3.882102 AACCCCTTTAAGTTAACCCGT 57.118 42.857 0.88 0.00 0.00 5.28
105 106 4.991789 AACCCCTTTAAGTTAACCCGTA 57.008 40.909 0.88 0.00 0.00 4.02
106 107 4.558226 ACCCCTTTAAGTTAACCCGTAG 57.442 45.455 0.88 0.00 0.00 3.51
107 108 3.273434 CCCCTTTAAGTTAACCCGTAGC 58.727 50.000 0.88 0.00 0.00 3.58
108 109 2.931969 CCCTTTAAGTTAACCCGTAGCG 59.068 50.000 0.88 0.00 0.00 4.26
109 110 3.368323 CCCTTTAAGTTAACCCGTAGCGA 60.368 47.826 0.88 0.00 0.00 4.93
110 111 4.436332 CCTTTAAGTTAACCCGTAGCGAT 58.564 43.478 0.88 0.00 0.00 4.58
111 112 4.269363 CCTTTAAGTTAACCCGTAGCGATG 59.731 45.833 0.88 0.00 0.00 3.84
112 113 2.304751 AAGTTAACCCGTAGCGATGG 57.695 50.000 0.88 0.00 0.00 3.51
113 114 0.179092 AGTTAACCCGTAGCGATGGC 60.179 55.000 0.88 0.00 40.37 4.40
123 124 2.805546 GCGATGGCTCCACGACTA 59.194 61.111 12.62 0.00 35.83 2.59
124 125 1.141019 GCGATGGCTCCACGACTAA 59.859 57.895 12.62 0.00 35.83 2.24
125 126 0.872021 GCGATGGCTCCACGACTAAG 60.872 60.000 12.62 0.00 35.83 2.18
126 127 0.456221 CGATGGCTCCACGACTAAGT 59.544 55.000 0.00 0.00 0.00 2.24
127 128 1.534175 CGATGGCTCCACGACTAAGTC 60.534 57.143 0.00 0.00 0.00 3.01
128 129 0.824759 ATGGCTCCACGACTAAGTCC 59.175 55.000 0.00 0.00 0.00 3.85
129 130 0.251653 TGGCTCCACGACTAAGTCCT 60.252 55.000 0.00 0.00 0.00 3.85
130 131 0.896226 GGCTCCACGACTAAGTCCTT 59.104 55.000 0.00 0.00 0.00 3.36
131 132 1.275573 GGCTCCACGACTAAGTCCTTT 59.724 52.381 0.00 0.00 0.00 3.11
132 133 2.608268 GCTCCACGACTAAGTCCTTTC 58.392 52.381 0.00 0.00 0.00 2.62
133 134 2.231721 GCTCCACGACTAAGTCCTTTCT 59.768 50.000 0.00 0.00 0.00 2.52
134 135 3.673866 GCTCCACGACTAAGTCCTTTCTC 60.674 52.174 0.00 0.00 0.00 2.87
135 136 3.759618 CTCCACGACTAAGTCCTTTCTCT 59.240 47.826 0.00 0.00 0.00 3.10
136 137 4.914983 TCCACGACTAAGTCCTTTCTCTA 58.085 43.478 0.00 0.00 0.00 2.43
137 138 4.942483 TCCACGACTAAGTCCTTTCTCTAG 59.058 45.833 0.00 0.00 0.00 2.43
138 139 4.096682 CCACGACTAAGTCCTTTCTCTAGG 59.903 50.000 0.00 0.00 36.59 3.02
139 140 4.942483 CACGACTAAGTCCTTTCTCTAGGA 59.058 45.833 0.00 0.00 42.02 2.94
147 148 3.034635 TCCTTTCTCTAGGACATCTGCC 58.965 50.000 0.00 0.00 39.40 4.85
148 149 2.223923 CCTTTCTCTAGGACATCTGCCG 60.224 54.545 0.00 0.00 37.50 5.69
149 150 2.145397 TTCTCTAGGACATCTGCCGT 57.855 50.000 0.00 0.00 0.00 5.68
150 151 1.393603 TCTCTAGGACATCTGCCGTG 58.606 55.000 0.00 0.00 0.00 4.94
151 152 1.064685 TCTCTAGGACATCTGCCGTGA 60.065 52.381 0.00 0.00 0.00 4.35
152 153 1.066303 CTCTAGGACATCTGCCGTGAC 59.934 57.143 0.00 0.00 0.00 3.67
153 154 0.817654 CTAGGACATCTGCCGTGACA 59.182 55.000 0.00 0.00 0.00 3.58
154 155 1.204704 CTAGGACATCTGCCGTGACAA 59.795 52.381 0.00 0.00 0.00 3.18
155 156 0.396435 AGGACATCTGCCGTGACAAA 59.604 50.000 0.00 0.00 0.00 2.83
156 157 1.202758 AGGACATCTGCCGTGACAAAA 60.203 47.619 0.00 0.00 0.00 2.44
157 158 1.069227 GGACATCTGCCGTGACAAAAC 60.069 52.381 0.00 0.00 0.00 2.43
158 159 0.951558 ACATCTGCCGTGACAAAACC 59.048 50.000 0.00 0.00 0.00 3.27
159 160 0.950836 CATCTGCCGTGACAAAACCA 59.049 50.000 0.00 0.00 0.00 3.67
160 161 0.951558 ATCTGCCGTGACAAAACCAC 59.048 50.000 0.00 0.00 0.00 4.16
161 162 0.107410 TCTGCCGTGACAAAACCACT 60.107 50.000 0.00 0.00 32.64 4.00
162 163 1.139256 TCTGCCGTGACAAAACCACTA 59.861 47.619 0.00 0.00 32.64 2.74
163 164 1.263217 CTGCCGTGACAAAACCACTAC 59.737 52.381 0.00 0.00 32.64 2.73
164 165 1.301423 GCCGTGACAAAACCACTACA 58.699 50.000 0.00 0.00 32.64 2.74
165 166 1.003223 GCCGTGACAAAACCACTACAC 60.003 52.381 0.00 0.00 32.64 2.90
166 167 1.600485 CCGTGACAAAACCACTACACC 59.400 52.381 0.00 0.00 32.64 4.16
167 168 1.600485 CGTGACAAAACCACTACACCC 59.400 52.381 0.00 0.00 32.64 4.61
168 169 2.743838 CGTGACAAAACCACTACACCCT 60.744 50.000 0.00 0.00 32.64 4.34
169 170 2.876550 GTGACAAAACCACTACACCCTC 59.123 50.000 0.00 0.00 0.00 4.30
170 171 2.158726 TGACAAAACCACTACACCCTCC 60.159 50.000 0.00 0.00 0.00 4.30
171 172 2.105993 GACAAAACCACTACACCCTCCT 59.894 50.000 0.00 0.00 0.00 3.69
172 173 3.320129 ACAAAACCACTACACCCTCCTA 58.680 45.455 0.00 0.00 0.00 2.94
173 174 3.717913 ACAAAACCACTACACCCTCCTAA 59.282 43.478 0.00 0.00 0.00 2.69
174 175 4.166531 ACAAAACCACTACACCCTCCTAAA 59.833 41.667 0.00 0.00 0.00 1.85
175 176 5.134661 CAAAACCACTACACCCTCCTAAAA 58.865 41.667 0.00 0.00 0.00 1.52
176 177 5.391577 AAACCACTACACCCTCCTAAAAA 57.608 39.130 0.00 0.00 0.00 1.94
177 178 4.635699 ACCACTACACCCTCCTAAAAAG 57.364 45.455 0.00 0.00 0.00 2.27
188 189 7.112779 CACCCTCCTAAAAAGTCATATGTTCT 58.887 38.462 1.90 0.24 0.00 3.01
202 203 5.362430 TCATATGTTCTAATTTTGTGCCCCC 59.638 40.000 1.90 0.00 0.00 5.40
242 243 1.920325 CTTGCCCTCCTCTCCACCA 60.920 63.158 0.00 0.00 0.00 4.17
245 246 2.122729 CCCTCCTCTCCACCACCA 59.877 66.667 0.00 0.00 0.00 4.17
265 266 2.438434 GGCCACAATCCACCTCGG 60.438 66.667 0.00 0.00 0.00 4.63
266 267 3.134127 GCCACAATCCACCTCGGC 61.134 66.667 0.00 0.00 33.14 5.54
267 268 2.350895 CCACAATCCACCTCGGCA 59.649 61.111 0.00 0.00 33.14 5.69
269 270 2.040544 CACAATCCACCTCGGCACC 61.041 63.158 0.00 0.00 33.14 5.01
284 285 0.248743 GCACCCGATCGTCGTGAATA 60.249 55.000 27.37 0.00 38.40 1.75
305 306 0.935898 GATGAGCTTCCTGCATCACG 59.064 55.000 7.32 0.00 45.94 4.35
306 307 0.251354 ATGAGCTTCCTGCATCACGT 59.749 50.000 0.00 0.00 45.94 4.49
321 322 1.740585 TCACGTGTTGGAACCACTTTG 59.259 47.619 16.51 0.00 0.00 2.77
324 325 1.267832 CGTGTTGGAACCACTTTGACG 60.268 52.381 0.00 0.00 0.00 4.35
332 333 0.319297 ACCACTTTGACGCGTCTACC 60.319 55.000 36.27 14.68 0.00 3.18
338 339 0.032952 TTGACGCGTCTACCTTTGCT 59.967 50.000 36.27 0.00 0.00 3.91
357 358 1.043116 TGCCCAGGTAGGATCGTCTG 61.043 60.000 0.00 0.00 41.22 3.51
359 360 1.753141 GCCCAGGTAGGATCGTCTGTA 60.753 57.143 0.00 0.00 41.22 2.74
380 381 2.606519 TGGAGGAAGTGGGGACGG 60.607 66.667 0.00 0.00 0.00 4.79
395 396 2.182030 CGGAGCCGTCCAGACTTC 59.818 66.667 0.00 0.00 44.18 3.01
397 398 1.030488 CGGAGCCGTCCAGACTTCTA 61.030 60.000 0.00 0.00 44.18 2.10
405 406 1.409427 GTCCAGACTTCTACATCGGGG 59.591 57.143 0.00 0.00 31.71 5.73
406 407 1.006758 TCCAGACTTCTACATCGGGGT 59.993 52.381 0.00 0.00 31.71 4.95
408 409 2.100197 CAGACTTCTACATCGGGGTGA 58.900 52.381 0.00 0.00 0.00 4.02
410 411 3.056107 CAGACTTCTACATCGGGGTGAAA 60.056 47.826 0.00 0.00 0.00 2.69
411 412 3.195825 AGACTTCTACATCGGGGTGAAAG 59.804 47.826 0.00 0.00 0.00 2.62
412 413 2.236395 ACTTCTACATCGGGGTGAAAGG 59.764 50.000 0.00 0.00 0.00 3.11
424 425 1.630878 GGTGAAAGGAGGAGGACACAT 59.369 52.381 0.00 0.00 0.00 3.21
429 430 2.557555 AGGAGGAGGACACATGATGA 57.442 50.000 0.00 0.00 0.00 2.92
434 435 1.673168 GAGGACACATGATGAAGCCC 58.327 55.000 0.00 0.00 0.00 5.19
436 437 0.392998 GGACACATGATGAAGCCCGT 60.393 55.000 0.00 0.00 0.00 5.28
438 439 0.392998 ACACATGATGAAGCCCGTCC 60.393 55.000 0.00 0.00 0.00 4.79
447 448 3.952628 AAGCCCGTCCGCTACTTGC 62.953 63.158 0.00 0.00 38.44 4.01
452 453 4.752879 GTCCGCTACTTGCCGCCA 62.753 66.667 0.00 0.00 38.78 5.69
453 454 4.752879 TCCGCTACTTGCCGCCAC 62.753 66.667 0.00 0.00 38.78 5.01
472 473 2.874780 GCCGTGCTCTCGTGTACG 60.875 66.667 0.00 0.00 43.66 3.67
474 475 2.874780 CGTGCTCTCGTGTACGCC 60.875 66.667 0.00 0.00 38.93 5.68
475 476 2.874780 GTGCTCTCGTGTACGCCG 60.875 66.667 0.00 0.00 39.60 6.46
476 477 4.111016 TGCTCTCGTGTACGCCGG 62.111 66.667 0.00 0.00 39.60 6.13
495 496 1.371145 CGGCGCCGTGATTTTTGTT 60.371 52.632 39.71 0.00 34.35 2.83
496 497 1.604612 CGGCGCCGTGATTTTTGTTG 61.605 55.000 39.71 7.80 34.35 3.33
501 502 1.792367 GCCGTGATTTTTGTTGAAGGC 59.208 47.619 0.00 0.00 35.00 4.35
529 530 1.611261 CGTGTTGGGAGGGGGTCTA 60.611 63.158 0.00 0.00 0.00 2.59
547 548 4.241555 GGCCGTCGCATGGGAGAT 62.242 66.667 13.49 0.00 36.38 2.75
548 549 2.969238 GCCGTCGCATGGGAGATG 60.969 66.667 13.49 6.19 34.03 2.90
550 551 1.592669 CCGTCGCATGGGAGATGAC 60.593 63.158 13.49 0.45 32.22 3.06
560 561 3.459232 TGGGAGATGACGATCAATGAC 57.541 47.619 0.00 0.00 0.00 3.06
562 563 2.034685 GGGAGATGACGATCAATGACGA 59.965 50.000 11.02 0.00 0.00 4.20
568 569 0.933097 ACGATCAATGACGATGCAGC 59.067 50.000 11.02 0.00 0.00 5.25
571 572 0.462581 ATCAATGACGATGCAGCCGT 60.463 50.000 15.43 15.43 43.56 5.68
579 580 3.704231 GATGCAGCCGTGGGATGGT 62.704 63.158 1.75 0.00 39.79 3.55
587 588 2.436646 GTGGGATGGTGGCGACTG 60.437 66.667 0.00 0.00 0.00 3.51
591 592 1.227674 GGATGGTGGCGACTGGATC 60.228 63.158 0.00 0.00 0.00 3.36
596 597 2.202919 TGGCGACTGGATCATGCG 60.203 61.111 0.00 0.00 0.00 4.73
606 607 3.133542 ACTGGATCATGCGAGAGAATCAA 59.866 43.478 0.00 0.00 37.82 2.57
614 615 2.216898 GCGAGAGAATCAAGGGAATGG 58.783 52.381 0.00 0.00 37.82 3.16
622 623 3.822097 ATCAAGGGAATGGGATGGATC 57.178 47.619 0.00 0.00 0.00 3.36
624 625 0.111253 AAGGGAATGGGATGGATCGC 59.889 55.000 0.00 0.00 39.87 4.58
625 626 1.672356 GGGAATGGGATGGATCGCG 60.672 63.158 0.00 0.00 42.06 5.87
634 635 1.299541 GATGGATCGCGTGGTCAAAT 58.700 50.000 12.01 3.92 0.00 2.32
635 636 1.261619 GATGGATCGCGTGGTCAAATC 59.738 52.381 12.01 9.66 0.00 2.17
636 637 1.081556 TGGATCGCGTGGTCAAATCG 61.082 55.000 12.01 0.00 0.00 3.34
637 638 0.804544 GGATCGCGTGGTCAAATCGA 60.805 55.000 12.01 0.00 0.00 3.59
638 639 1.209128 GATCGCGTGGTCAAATCGAT 58.791 50.000 5.77 0.00 41.79 3.59
639 640 0.930310 ATCGCGTGGTCAAATCGATG 59.070 50.000 5.77 0.00 38.30 3.84
640 641 0.389296 TCGCGTGGTCAAATCGATGT 60.389 50.000 5.77 0.00 0.00 3.06
644 645 2.281762 GCGTGGTCAAATCGATGTCTAC 59.718 50.000 0.00 0.00 0.00 2.59
668 669 0.729140 CATCCGCGAAGGTTTTGTGC 60.729 55.000 8.23 0.00 41.99 4.57
680 681 2.306847 GTTTTGTGCAAAGAGGAGGGA 58.693 47.619 0.00 0.00 0.00 4.20
697 707 4.018870 GGAGGGAAGAAGAGATGACCTTTT 60.019 45.833 0.00 0.00 0.00 2.27
699 709 4.352298 AGGGAAGAAGAGATGACCTTTTGT 59.648 41.667 0.00 0.00 0.00 2.83
700 710 4.457257 GGGAAGAAGAGATGACCTTTTGTG 59.543 45.833 0.00 0.00 0.00 3.33
702 712 4.026356 AGAAGAGATGACCTTTTGTGGG 57.974 45.455 0.00 0.00 0.00 4.61
731 741 1.967319 AAAACTCGCCACATGACAGT 58.033 45.000 0.00 0.00 0.00 3.55
760 770 1.805428 GCCACCCGTGCAAGTCAAAT 61.805 55.000 0.00 0.00 0.00 2.32
762 772 0.110238 CACCCGTGCAAGTCAAATCG 60.110 55.000 0.00 0.00 0.00 3.34
768 778 0.447406 TGCAAGTCAAATCGGATGCG 59.553 50.000 0.00 0.00 36.62 4.73
773 783 2.023181 CAAATCGGATGCGGTGCG 59.977 61.111 6.82 0.00 43.73 5.34
782 792 2.088674 GATGCGGTGCGGATAGGACT 62.089 60.000 0.00 0.00 38.17 3.85
786 796 2.494918 GTGCGGATAGGACTGCGT 59.505 61.111 0.00 0.00 44.15 5.24
800 810 2.327940 GCGTGTGACACACTTGGC 59.672 61.111 30.51 23.81 46.46 4.52
804 814 1.793714 CGTGTGACACACTTGGCAAAC 60.794 52.381 30.51 7.01 44.76 2.93
805 815 1.472480 GTGTGACACACTTGGCAAACT 59.528 47.619 27.73 0.00 44.90 2.66
823 833 6.239204 GGCAAACTTTTAGGACCTAAATGTGT 60.239 38.462 31.23 26.68 40.73 3.72
824 834 6.640907 GCAAACTTTTAGGACCTAAATGTGTG 59.359 38.462 34.09 34.09 43.92 3.82
834 844 7.231467 AGGACCTAAATGTGTGTTTTCATAGT 58.769 34.615 0.00 0.00 0.00 2.12
836 846 8.448615 GGACCTAAATGTGTGTTTTCATAGTAC 58.551 37.037 0.00 0.00 0.00 2.73
845 855 8.517878 TGTGTGTTTTCATAGTACTAGGACTAC 58.482 37.037 17.35 16.12 34.78 2.73
846 856 7.695618 GTGTGTTTTCATAGTACTAGGACTACG 59.304 40.741 17.35 9.57 34.78 3.51
849 859 9.448438 TGTTTTCATAGTACTAGGACTACGTTA 57.552 33.333 17.35 0.00 34.78 3.18
850 860 9.928236 GTTTTCATAGTACTAGGACTACGTTAG 57.072 37.037 17.35 5.66 34.78 2.34
859 869 1.180029 GACTACGTTAGCACCCCTCA 58.820 55.000 0.00 0.00 0.00 3.86
869 879 6.014925 ACGTTAGCACCCCTCAAATAATTTTT 60.015 34.615 0.00 0.00 0.00 1.94
871 881 4.578871 AGCACCCCTCAAATAATTTTTGC 58.421 39.130 7.71 0.00 0.00 3.68
885 896 7.832503 ATAATTTTTGCACTTGTGGCTATTC 57.167 32.000 2.81 0.00 0.00 1.75
890 901 5.414789 TTGCACTTGTGGCTATTCTACTA 57.585 39.130 2.81 0.00 0.00 1.82
979 1420 3.615155 GCTCTACAAGGCAGGAAGAAAT 58.385 45.455 0.00 0.00 0.00 2.17
1111 1576 2.260524 AGGCCTTCCTCCTCCTCCT 61.261 63.158 0.00 0.00 38.72 3.69
1112 1577 1.764454 GGCCTTCCTCCTCCTCCTC 60.764 68.421 0.00 0.00 0.00 3.71
1113 1578 1.764454 GCCTTCCTCCTCCTCCTCC 60.764 68.421 0.00 0.00 0.00 4.30
1114 1579 2.023532 CCTTCCTCCTCCTCCTCCT 58.976 63.158 0.00 0.00 0.00 3.69
1115 1580 0.105709 CCTTCCTCCTCCTCCTCCTC 60.106 65.000 0.00 0.00 0.00 3.71
1116 1581 0.105709 CTTCCTCCTCCTCCTCCTCC 60.106 65.000 0.00 0.00 0.00 4.30
1117 1582 1.939082 TTCCTCCTCCTCCTCCTCCG 61.939 65.000 0.00 0.00 0.00 4.63
1118 1583 2.520741 CTCCTCCTCCTCCTCCGC 60.521 72.222 0.00 0.00 0.00 5.54
1119 1584 3.347590 TCCTCCTCCTCCTCCGCA 61.348 66.667 0.00 0.00 0.00 5.69
1120 1585 2.837291 CCTCCTCCTCCTCCGCAG 60.837 72.222 0.00 0.00 0.00 5.18
1121 1586 3.535962 CTCCTCCTCCTCCGCAGC 61.536 72.222 0.00 0.00 0.00 5.25
1593 2076 8.089597 CCTGTAGTACGAGTAGATCTCATTCTA 58.910 40.741 0.00 0.00 42.88 2.10
1598 2081 6.019779 ACGAGTAGATCTCATTCTATTGGC 57.980 41.667 0.00 0.00 42.88 4.52
1617 2100 1.745141 GCACAAGCATCTCCCGATCTT 60.745 52.381 0.00 0.00 41.58 2.40
1632 2115 1.139853 GATCTTCCTGGATCGGCTTGT 59.860 52.381 0.00 0.00 33.80 3.16
1640 2123 1.065709 TGGATCGGCTTGTTAGGTTCC 60.066 52.381 0.00 0.00 0.00 3.62
1648 2131 2.668279 GCTTGTTAGGTTCCATTGTGCG 60.668 50.000 0.00 0.00 0.00 5.34
1665 2148 1.878070 CGCTTCAAGCTTGGCATCA 59.122 52.632 25.73 3.47 39.60 3.07
1759 2242 0.676466 TTGGCCACGGCTTAGTCATG 60.676 55.000 3.88 0.00 41.60 3.07
1761 2244 1.220749 GCCACGGCTTAGTCATGGA 59.779 57.895 2.09 0.00 38.26 3.41
1763 2246 1.070134 GCCACGGCTTAGTCATGGATA 59.930 52.381 2.09 0.00 38.26 2.59
1785 2268 9.067986 GGATAATTCTTAGGGGTTGAAACTATG 57.932 37.037 0.00 0.00 0.00 2.23
1823 2306 7.288810 TGTTCTAGCAATGTTTGGAGATTTT 57.711 32.000 0.00 0.00 0.00 1.82
1849 2336 3.495001 GGTCTCTCTGTAAGTTGTGTTGC 59.505 47.826 0.00 0.00 33.76 4.17
1880 2367 2.058595 GGAGGCCGCTGTTAGAGGA 61.059 63.158 6.40 0.00 37.36 3.71
1967 2454 3.599792 CTGGTTGCTTTGAGGCGCG 62.600 63.158 0.00 0.00 34.52 6.86
1974 2461 1.664649 CTTTGAGGCGCGTCTGTGA 60.665 57.895 28.18 7.68 0.00 3.58
1995 2482 5.519206 GTGAACTGATATGTTAGTCGGGTTC 59.481 44.000 0.00 0.00 33.95 3.62
2093 2581 3.317711 AGACTGCTGAGTTATCATCGAGG 59.682 47.826 0.00 0.00 34.12 4.63
2101 2589 5.359756 TGAGTTATCATCGAGGGAAACATG 58.640 41.667 14.68 0.00 0.00 3.21
2112 2600 4.079253 GAGGGAAACATGCAGGTTCTTTA 58.921 43.478 18.18 0.00 43.67 1.85
2130 2618 7.310052 GGTTCTTTATTTGGCCTTCTTTCAGAT 60.310 37.037 3.32 0.00 0.00 2.90
2252 2741 5.060662 TCTGTTATATAGGTCGATGCTGC 57.939 43.478 0.00 0.00 0.00 5.25
2347 2836 4.079958 ACTGTTTGGTACTTTGGTCCTTCT 60.080 41.667 0.00 0.00 0.00 2.85
2489 2978 8.394971 TCAGCAAAACTTTCATCTTATCTTGA 57.605 30.769 0.00 0.00 0.00 3.02
2589 3302 8.818622 ATAGGTGTAGTTCTAGTGTTGTATGA 57.181 34.615 0.00 0.00 0.00 2.15
2622 3335 1.598130 GTCTTTGGTGCAGTCCGCT 60.598 57.895 0.00 0.00 43.06 5.52
2721 3434 4.766007 CTGAATTTCAGTTGAGTCGTGTG 58.234 43.478 16.71 0.00 39.58 3.82
2758 3471 2.616330 TTTGCTTTGAGGCGCCTCG 61.616 57.895 42.48 31.96 45.48 4.63
2828 3541 4.873817 TCTTTGCATGAACTTTGGATGTG 58.126 39.130 0.00 0.00 0.00 3.21
2850 3563 5.008316 GTGTTGAACCGAACCATTCTAGTTT 59.992 40.000 0.00 0.00 0.00 2.66
2969 3682 3.118408 TGGTTTCTAGGTTCCATGATCCG 60.118 47.826 0.00 0.00 0.00 4.18
2989 3702 2.802816 CGTAAGGACATGCTATTCTGCC 59.197 50.000 0.00 0.00 0.00 4.85
2991 3704 2.926778 AGGACATGCTATTCTGCCTC 57.073 50.000 0.00 0.00 0.00 4.70
3025 3738 2.551459 AGATTCACAGCACAAACTCTGC 59.449 45.455 0.00 0.00 33.80 4.26
3052 3765 2.159184 AGGCTGATGACGTACACATCTG 60.159 50.000 22.01 21.63 42.89 2.90
3064 3800 5.037385 CGTACACATCTGAACATAGTGAGG 58.963 45.833 0.00 0.00 34.47 3.86
3094 3830 4.489810 ACTCATTGTCTCTTTGAGCTACG 58.510 43.478 0.00 0.00 40.40 3.51
3171 3915 1.451936 GTGCAGGTGGTCAGGAAGT 59.548 57.895 0.00 0.00 0.00 3.01
3172 3916 0.685097 GTGCAGGTGGTCAGGAAGTA 59.315 55.000 0.00 0.00 0.00 2.24
3173 3917 1.071699 GTGCAGGTGGTCAGGAAGTAA 59.928 52.381 0.00 0.00 0.00 2.24
3220 3964 7.179076 TGGTACTCCCTCTGTAAAGAAATAC 57.821 40.000 0.00 0.00 0.00 1.89
3225 3969 7.974504 ACTCCCTCTGTAAAGAAATACAAGAA 58.025 34.615 0.00 0.00 35.48 2.52
3279 4028 8.388656 ACACTCCTATATTTCTTTACAAGGGA 57.611 34.615 0.00 0.00 0.00 4.20
3380 4140 5.798125 TGTCACCAAATGCCAAATAAAGA 57.202 34.783 0.00 0.00 0.00 2.52
3502 4262 8.225603 ACTCTAAAACTGACACAATCATGTTT 57.774 30.769 0.00 0.00 38.87 2.83
3702 4468 8.110860 AGGTTGTTTATAGTTTCTTGTCATGG 57.889 34.615 0.00 0.00 0.00 3.66
3703 4469 7.176690 AGGTTGTTTATAGTTTCTTGTCATGGG 59.823 37.037 0.00 0.00 0.00 4.00
3788 4679 8.770010 ATGCTAGTACTTATTACTGGACTTCT 57.230 34.615 0.00 0.00 40.88 2.85
3803 4696 7.967908 ACTGGACTTCTTCTTGGTATATATGG 58.032 38.462 0.00 0.00 0.00 2.74
3828 4721 7.880195 GGCCTTTTAGAGATGAGATAAAGCATA 59.120 37.037 0.00 0.00 0.00 3.14
4016 4919 5.124776 TGTTACACAAGTTTTACTGCTGCTT 59.875 36.000 0.00 0.00 0.00 3.91
4043 4946 7.334421 GCTCATTTGGACTTGAACTGTCTTATA 59.666 37.037 0.00 0.00 35.04 0.98
4056 4959 5.940617 ACTGTCTTATATTGCCCATGCTAA 58.059 37.500 0.00 0.00 38.71 3.09
4101 5006 3.453353 TCAATGATCCTCTGCAGATGTCA 59.547 43.478 18.63 20.11 0.00 3.58
4106 5011 1.642215 CTCTGCAGATGTCATGCGC 59.358 57.895 18.63 0.00 46.87 6.09
4193 5098 4.070552 GAGCGACTGTTCGGCCCT 62.071 66.667 0.00 0.00 45.98 5.19
4208 5113 0.329596 GCCCTGTGTGGAAGGATCTT 59.670 55.000 0.00 0.00 36.91 2.40
4244 5149 1.867919 CGGACAAGCTCGGTCTCACT 61.868 60.000 15.59 0.00 35.61 3.41
4268 5173 1.891933 TCATGGGGTAGATTCTGCCA 58.108 50.000 20.62 3.46 38.00 4.92
4387 5300 1.071605 GGTTAGACTGAAGCTGCGTG 58.928 55.000 0.00 0.00 0.00 5.34
4509 5426 4.018415 AGCTATGGGGAAAAAGTTAGCAGA 60.018 41.667 0.00 0.00 0.00 4.26
4561 5478 3.510360 GCCTGACTGTCTCTTAACTACCA 59.490 47.826 9.51 0.00 0.00 3.25
4570 5487 6.822442 TGTCTCTTAACTACCATGTGTCAAA 58.178 36.000 0.00 0.00 0.00 2.69
4573 5490 7.225931 GTCTCTTAACTACCATGTGTCAAACAA 59.774 37.037 0.00 0.00 43.61 2.83
4581 5498 5.437060 ACCATGTGTCAAACAAGTTCTACT 58.563 37.500 0.00 0.00 43.61 2.57
4636 5553 6.712998 TCCAACATAATCTCTTTTTGACCGAA 59.287 34.615 0.00 0.00 0.00 4.30
4655 5572 3.486875 CGAAGGGATTTTGCGTGGAATAC 60.487 47.826 0.00 0.00 0.00 1.89
4672 5589 1.271856 TACGGCAGGAAATCTGGACA 58.728 50.000 0.00 0.00 43.54 4.02
4676 5593 0.807496 GCAGGAAATCTGGACAGTGC 59.193 55.000 0.00 0.00 43.54 4.40
4685 5602 2.838736 TCTGGACAGTGCTTTCAGTTC 58.161 47.619 0.00 0.00 0.00 3.01
4686 5603 2.435805 TCTGGACAGTGCTTTCAGTTCT 59.564 45.455 0.00 0.00 0.00 3.01
4688 5605 3.206150 TGGACAGTGCTTTCAGTTCTTC 58.794 45.455 0.00 0.00 0.00 2.87
4689 5606 3.206150 GGACAGTGCTTTCAGTTCTTCA 58.794 45.455 0.00 0.00 0.00 3.02
4690 5607 3.002759 GGACAGTGCTTTCAGTTCTTCAC 59.997 47.826 0.00 0.00 0.00 3.18
4691 5608 2.945668 ACAGTGCTTTCAGTTCTTCACC 59.054 45.455 0.00 0.00 0.00 4.02
4692 5609 2.291741 CAGTGCTTTCAGTTCTTCACCC 59.708 50.000 0.00 0.00 0.00 4.61
4693 5610 2.092429 AGTGCTTTCAGTTCTTCACCCA 60.092 45.455 0.00 0.00 0.00 4.51
4694 5611 2.033424 GTGCTTTCAGTTCTTCACCCAC 59.967 50.000 0.00 0.00 0.00 4.61
4695 5612 1.609072 GCTTTCAGTTCTTCACCCACC 59.391 52.381 0.00 0.00 0.00 4.61
4696 5613 2.930950 CTTTCAGTTCTTCACCCACCA 58.069 47.619 0.00 0.00 0.00 4.17
4700 5617 2.441375 TCAGTTCTTCACCCACCATCAA 59.559 45.455 0.00 0.00 0.00 2.57
4709 5626 1.031571 CCCACCATCAACCACCATCG 61.032 60.000 0.00 0.00 0.00 3.84
4721 5638 4.618920 ACCACCATCGTTCTTTCTTACT 57.381 40.909 0.00 0.00 0.00 2.24
4723 5640 5.374071 ACCACCATCGTTCTTTCTTACTTT 58.626 37.500 0.00 0.00 0.00 2.66
4724 5641 5.469084 ACCACCATCGTTCTTTCTTACTTTC 59.531 40.000 0.00 0.00 0.00 2.62
4725 5642 5.701290 CCACCATCGTTCTTTCTTACTTTCT 59.299 40.000 0.00 0.00 0.00 2.52
4726 5643 6.204882 CCACCATCGTTCTTTCTTACTTTCTT 59.795 38.462 0.00 0.00 0.00 2.52
4727 5644 7.386848 CCACCATCGTTCTTTCTTACTTTCTTA 59.613 37.037 0.00 0.00 0.00 2.10
4728 5645 8.221766 CACCATCGTTCTTTCTTACTTTCTTAC 58.778 37.037 0.00 0.00 0.00 2.34
4729 5646 7.929785 ACCATCGTTCTTTCTTACTTTCTTACA 59.070 33.333 0.00 0.00 0.00 2.41
4750 5667 3.586100 TCTAGTGTCACGCATTGCTAA 57.414 42.857 7.12 0.00 0.00 3.09
4751 5668 3.250744 TCTAGTGTCACGCATTGCTAAC 58.749 45.455 7.12 2.86 0.00 2.34
4783 5704 2.669364 ACTTTCTACACTACCAACGCG 58.331 47.619 3.53 3.53 0.00 6.01
4824 5745 3.084039 TGAATGAGCAGGATTGTTCCAC 58.916 45.455 0.00 0.00 45.30 4.02
4873 5795 3.199880 AGTATTGTGAGCATAGTGCCC 57.800 47.619 0.00 0.00 46.52 5.36
4892 5814 3.851098 CCCTTCTCTGTAACAGTAGTGC 58.149 50.000 0.00 0.00 32.61 4.40
4923 5845 2.844122 AACAGCGTTCAGAAAACCAC 57.156 45.000 0.00 0.00 0.00 4.16
4962 5933 4.766891 GCTAATAGCATATTTTCAGGGGCA 59.233 41.667 7.49 0.00 41.89 5.36
4964 5935 1.406903 AGCATATTTTCAGGGGCAGC 58.593 50.000 0.00 0.00 0.00 5.25
4982 5953 3.787826 CAGCGCTATTTTGTATAGCACG 58.212 45.455 10.99 3.42 45.32 5.34
4983 5954 2.221055 AGCGCTATTTTGTATAGCACGC 59.779 45.455 8.99 11.24 45.32 5.34
4984 5955 2.221055 GCGCTATTTTGTATAGCACGCT 59.779 45.455 14.90 0.00 45.32 5.07
4985 5956 3.427528 GCGCTATTTTGTATAGCACGCTA 59.572 43.478 14.90 0.39 45.32 4.26
4986 5957 4.091509 GCGCTATTTTGTATAGCACGCTAT 59.908 41.667 15.45 15.45 45.32 2.97
4987 5958 5.287752 GCGCTATTTTGTATAGCACGCTATA 59.712 40.000 13.51 13.51 45.32 1.31
4988 5959 6.506513 GCGCTATTTTGTATAGCACGCTATAG 60.507 42.308 17.07 8.27 45.32 1.31
4989 5960 6.506513 CGCTATTTTGTATAGCACGCTATAGC 60.507 42.308 17.07 15.09 45.32 2.97
4990 5961 6.310467 GCTATTTTGTATAGCACGCTATAGCA 59.690 38.462 23.99 14.68 44.64 3.49
4991 5962 7.010552 GCTATTTTGTATAGCACGCTATAGCAT 59.989 37.037 23.99 6.50 44.64 3.79
4992 5963 9.516314 CTATTTTGTATAGCACGCTATAGCATA 57.484 33.333 23.99 10.96 40.79 3.14
4993 5964 8.948631 ATTTTGTATAGCACGCTATAGCATAT 57.051 30.769 23.99 16.52 40.79 1.78
4994 5965 8.771920 TTTTGTATAGCACGCTATAGCATATT 57.228 30.769 23.99 9.36 40.79 1.28
4995 5966 9.863845 TTTTGTATAGCACGCTATAGCATATTA 57.136 29.630 23.99 11.12 40.79 0.98
4996 5967 9.863845 TTTGTATAGCACGCTATAGCATATTAA 57.136 29.630 23.99 10.21 40.79 1.40
5000 5971 8.749841 ATAGCACGCTATAGCATATTAATAGC 57.250 34.615 23.99 7.19 42.95 2.97
5012 5983 8.335532 AGCATATTAATAGCGCAATTTAAGGA 57.664 30.769 11.47 3.78 0.00 3.36
5013 5984 8.237267 AGCATATTAATAGCGCAATTTAAGGAC 58.763 33.333 11.47 2.76 0.00 3.85
5014 5985 7.216317 GCATATTAATAGCGCAATTTAAGGACG 59.784 37.037 11.47 2.85 0.00 4.79
5015 5986 3.963383 AATAGCGCAATTTAAGGACGG 57.037 42.857 11.47 0.00 0.00 4.79
5016 5987 2.389962 TAGCGCAATTTAAGGACGGT 57.610 45.000 11.47 0.00 38.17 4.83
5017 5988 0.802494 AGCGCAATTTAAGGACGGTG 59.198 50.000 11.47 0.00 32.66 4.94
5018 5989 0.796870 GCGCAATTTAAGGACGGTGC 60.797 55.000 0.30 0.00 0.00 5.01
5019 5990 0.802494 CGCAATTTAAGGACGGTGCT 59.198 50.000 0.00 0.00 0.00 4.40
5020 5991 2.004017 CGCAATTTAAGGACGGTGCTA 58.996 47.619 1.54 0.00 0.00 3.49
5021 5992 2.612212 CGCAATTTAAGGACGGTGCTAT 59.388 45.455 1.54 0.00 0.00 2.97
5022 5993 3.064820 CGCAATTTAAGGACGGTGCTATT 59.935 43.478 1.54 0.00 0.00 1.73
5023 5994 4.438200 CGCAATTTAAGGACGGTGCTATTT 60.438 41.667 1.54 0.00 0.00 1.40
5024 5995 5.407502 GCAATTTAAGGACGGTGCTATTTT 58.592 37.500 1.54 0.00 0.00 1.82
5025 5996 5.288472 GCAATTTAAGGACGGTGCTATTTTG 59.712 40.000 1.54 6.42 0.00 2.44
5026 5997 6.386654 CAATTTAAGGACGGTGCTATTTTGT 58.613 36.000 1.54 0.00 0.00 2.83
5027 5998 7.531716 CAATTTAAGGACGGTGCTATTTTGTA 58.468 34.615 1.54 0.00 0.00 2.41
5028 5999 7.875327 ATTTAAGGACGGTGCTATTTTGTAT 57.125 32.000 1.54 0.00 0.00 2.29
5029 6000 8.967664 ATTTAAGGACGGTGCTATTTTGTATA 57.032 30.769 1.54 0.00 0.00 1.47
5030 6001 8.428186 TTTAAGGACGGTGCTATTTTGTATAG 57.572 34.615 1.54 0.00 0.00 1.31
5031 6002 4.377897 AGGACGGTGCTATTTTGTATAGC 58.622 43.478 0.00 9.29 45.28 2.97
5065 6036 1.405661 CCTTCGCAGAAACCTACTCCC 60.406 57.143 0.00 0.00 45.90 4.30
5076 6047 1.072331 ACCTACTCCCACACAAGCAAG 59.928 52.381 0.00 0.00 0.00 4.01
5081 6052 0.823356 TCCCACACAAGCAAGCCTTC 60.823 55.000 0.00 0.00 0.00 3.46
5082 6053 1.108727 CCCACACAAGCAAGCCTTCA 61.109 55.000 0.00 0.00 0.00 3.02
5110 6081 6.327365 AGAAACTTCATGGGGAAACAAATCTT 59.673 34.615 0.00 0.00 34.44 2.40
5124 6096 3.057946 ACAAATCTTCAAGGAAAGCGCTC 60.058 43.478 12.06 0.00 0.00 5.03
5125 6097 2.479566 ATCTTCAAGGAAAGCGCTCA 57.520 45.000 12.06 0.00 0.00 4.26
5126 6098 2.254546 TCTTCAAGGAAAGCGCTCAA 57.745 45.000 12.06 0.00 0.00 3.02
5127 6099 2.571212 TCTTCAAGGAAAGCGCTCAAA 58.429 42.857 12.06 0.00 0.00 2.69
5128 6100 3.149196 TCTTCAAGGAAAGCGCTCAAAT 58.851 40.909 12.06 0.00 0.00 2.32
5129 6101 3.569701 TCTTCAAGGAAAGCGCTCAAATT 59.430 39.130 12.06 0.00 0.00 1.82
5130 6102 4.037923 TCTTCAAGGAAAGCGCTCAAATTT 59.962 37.500 12.06 0.00 0.00 1.82
5131 6103 4.320608 TCAAGGAAAGCGCTCAAATTTT 57.679 36.364 12.06 0.00 0.00 1.82
5132 6104 4.692228 TCAAGGAAAGCGCTCAAATTTTT 58.308 34.783 12.06 0.00 0.00 1.94
5156 6128 7.611821 TTTTGAATTTGAATTCGTTCCGTAC 57.388 32.000 10.81 0.00 46.01 3.67
5157 6129 6.548441 TTGAATTTGAATTCGTTCCGTACT 57.452 33.333 10.81 0.00 46.01 2.73
5158 6130 6.160664 TGAATTTGAATTCGTTCCGTACTC 57.839 37.500 10.81 0.00 46.01 2.59
5159 6131 5.697178 TGAATTTGAATTCGTTCCGTACTCA 59.303 36.000 10.81 0.48 46.01 3.41
5160 6132 6.203145 TGAATTTGAATTCGTTCCGTACTCAA 59.797 34.615 10.81 0.00 46.01 3.02
5161 6133 5.987777 TTTGAATTCGTTCCGTACTCAAA 57.012 34.783 0.04 0.00 31.88 2.69
5162 6134 4.977741 TGAATTCGTTCCGTACTCAAAC 57.022 40.909 0.04 0.00 0.00 2.93
5163 6135 4.624015 TGAATTCGTTCCGTACTCAAACT 58.376 39.130 0.04 0.00 0.00 2.66
5164 6136 4.446385 TGAATTCGTTCCGTACTCAAACTG 59.554 41.667 0.04 0.00 0.00 3.16
5165 6137 3.713858 TTCGTTCCGTACTCAAACTGA 57.286 42.857 0.00 0.00 0.00 3.41
5166 6138 3.004024 TCGTTCCGTACTCAAACTGAC 57.996 47.619 0.00 0.00 0.00 3.51
5167 6139 2.056577 CGTTCCGTACTCAAACTGACC 58.943 52.381 0.00 0.00 0.00 4.02
5168 6140 2.544277 CGTTCCGTACTCAAACTGACCA 60.544 50.000 0.00 0.00 0.00 4.02
5169 6141 3.460103 GTTCCGTACTCAAACTGACCAA 58.540 45.455 0.00 0.00 0.00 3.67
5170 6142 3.380479 TCCGTACTCAAACTGACCAAG 57.620 47.619 0.00 0.00 0.00 3.61
5171 6143 2.960384 TCCGTACTCAAACTGACCAAGA 59.040 45.455 0.00 0.00 0.00 3.02
5172 6144 3.385433 TCCGTACTCAAACTGACCAAGAA 59.615 43.478 0.00 0.00 0.00 2.52
5173 6145 3.741344 CCGTACTCAAACTGACCAAGAAG 59.259 47.826 0.00 0.00 0.00 2.85
5174 6146 3.741344 CGTACTCAAACTGACCAAGAAGG 59.259 47.826 0.00 0.00 45.67 3.46
5175 6147 4.500887 CGTACTCAAACTGACCAAGAAGGA 60.501 45.833 0.00 0.00 41.22 3.36
5176 6148 4.503714 ACTCAAACTGACCAAGAAGGAA 57.496 40.909 0.00 0.00 41.22 3.36
5177 6149 4.855340 ACTCAAACTGACCAAGAAGGAAA 58.145 39.130 0.00 0.00 41.22 3.13
5178 6150 4.640647 ACTCAAACTGACCAAGAAGGAAAC 59.359 41.667 0.00 0.00 41.22 2.78
5180 6152 4.881850 TCAAACTGACCAAGAAGGAAACTC 59.118 41.667 0.00 0.00 42.68 3.01
5181 6153 4.503714 AACTGACCAAGAAGGAAACTCA 57.496 40.909 0.00 0.00 42.68 3.41
5182 6154 4.503714 ACTGACCAAGAAGGAAACTCAA 57.496 40.909 0.00 0.00 42.68 3.02
5183 6155 4.855340 ACTGACCAAGAAGGAAACTCAAA 58.145 39.130 0.00 0.00 42.68 2.69
5184 6156 5.261216 ACTGACCAAGAAGGAAACTCAAAA 58.739 37.500 0.00 0.00 42.68 2.44
5185 6157 5.358160 ACTGACCAAGAAGGAAACTCAAAAG 59.642 40.000 0.00 0.00 42.68 2.27
5186 6158 4.644685 TGACCAAGAAGGAAACTCAAAAGG 59.355 41.667 0.00 0.00 42.68 3.11
5187 6159 3.384789 ACCAAGAAGGAAACTCAAAAGGC 59.615 43.478 0.00 0.00 42.68 4.35
5188 6160 3.384467 CCAAGAAGGAAACTCAAAAGGCA 59.616 43.478 0.00 0.00 42.68 4.75
5189 6161 4.500375 CCAAGAAGGAAACTCAAAAGGCAG 60.500 45.833 0.00 0.00 42.68 4.85
5190 6162 4.170468 AGAAGGAAACTCAAAAGGCAGA 57.830 40.909 0.00 0.00 42.68 4.26
5191 6163 4.140536 AGAAGGAAACTCAAAAGGCAGAG 58.859 43.478 0.00 0.00 42.68 3.35
5192 6164 2.868899 AGGAAACTCAAAAGGCAGAGG 58.131 47.619 0.00 0.00 32.90 3.69
5193 6165 2.175715 AGGAAACTCAAAAGGCAGAGGT 59.824 45.455 0.00 0.00 32.90 3.85
5194 6166 2.294512 GGAAACTCAAAAGGCAGAGGTG 59.705 50.000 0.00 0.00 36.20 4.00
5195 6167 1.986882 AACTCAAAAGGCAGAGGTGG 58.013 50.000 0.00 0.00 36.20 4.61
5196 6168 1.140312 ACTCAAAAGGCAGAGGTGGA 58.860 50.000 0.00 0.00 36.20 4.02
5197 6169 1.494721 ACTCAAAAGGCAGAGGTGGAA 59.505 47.619 0.00 0.00 36.20 3.53
5198 6170 2.157738 CTCAAAAGGCAGAGGTGGAAG 58.842 52.381 0.00 0.00 0.00 3.46
5199 6171 0.600057 CAAAAGGCAGAGGTGGAAGC 59.400 55.000 0.00 0.00 0.00 3.86
5200 6172 0.890996 AAAAGGCAGAGGTGGAAGCG 60.891 55.000 0.00 0.00 40.95 4.68
5201 6173 2.754664 AAAGGCAGAGGTGGAAGCGG 62.755 60.000 0.00 0.00 40.95 5.52
5202 6174 3.706373 GGCAGAGGTGGAAGCGGA 61.706 66.667 0.00 0.00 40.95 5.54
5203 6175 2.586792 GCAGAGGTGGAAGCGGAT 59.413 61.111 0.00 0.00 40.95 4.18
5204 6176 1.078143 GCAGAGGTGGAAGCGGATT 60.078 57.895 0.00 0.00 40.95 3.01
5205 6177 0.178068 GCAGAGGTGGAAGCGGATTA 59.822 55.000 0.00 0.00 40.95 1.75
5206 6178 1.941325 CAGAGGTGGAAGCGGATTAC 58.059 55.000 0.00 0.00 40.95 1.89
5219 6191 2.914379 GATTACGAATCCAGCCCGG 58.086 57.895 0.00 0.00 31.60 5.73
5220 6192 0.602905 GATTACGAATCCAGCCCGGG 60.603 60.000 19.09 19.09 34.36 5.73
5221 6193 2.676163 ATTACGAATCCAGCCCGGGC 62.676 60.000 39.29 39.29 42.33 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.426024 GCCTACGTCTAGTTGTGATGGA 59.574 50.000 0.00 0.00 0.00 3.41
2 3 3.784701 AGCCTACGTCTAGTTGTGATG 57.215 47.619 0.00 0.00 0.00 3.07
4 5 4.595762 AAAAGCCTACGTCTAGTTGTGA 57.404 40.909 0.00 0.00 0.00 3.58
8 9 5.244626 TGAAGGTAAAAGCCTACGTCTAGTT 59.755 40.000 0.00 0.00 38.03 2.24
9 10 4.768968 TGAAGGTAAAAGCCTACGTCTAGT 59.231 41.667 0.00 0.00 38.03 2.57
10 11 5.320549 TGAAGGTAAAAGCCTACGTCTAG 57.679 43.478 0.00 0.00 38.03 2.43
11 12 5.449588 CGATGAAGGTAAAAGCCTACGTCTA 60.450 44.000 0.00 0.00 38.03 2.59
13 14 3.550678 CGATGAAGGTAAAAGCCTACGTC 59.449 47.826 0.00 0.00 38.03 4.34
15 16 3.518590 ACGATGAAGGTAAAAGCCTACG 58.481 45.455 0.00 0.00 38.03 3.51
17 18 5.395990 CCCTTACGATGAAGGTAAAAGCCTA 60.396 44.000 12.37 0.00 44.02 3.93
18 19 4.514401 CCTTACGATGAAGGTAAAAGCCT 58.486 43.478 0.00 0.00 41.09 4.58
19 20 3.626217 CCCTTACGATGAAGGTAAAAGCC 59.374 47.826 12.37 0.00 44.02 4.35
20 21 3.626217 CCCCTTACGATGAAGGTAAAAGC 59.374 47.826 12.37 0.00 44.02 3.51
21 22 3.626217 GCCCCTTACGATGAAGGTAAAAG 59.374 47.826 12.37 0.00 44.02 2.27
22 23 3.613030 GCCCCTTACGATGAAGGTAAAA 58.387 45.455 12.37 0.00 44.02 1.52
23 24 2.092807 GGCCCCTTACGATGAAGGTAAA 60.093 50.000 12.37 0.00 44.02 2.01
24 25 1.487558 GGCCCCTTACGATGAAGGTAA 59.512 52.381 12.37 0.00 44.02 2.85
25 26 1.125633 GGCCCCTTACGATGAAGGTA 58.874 55.000 12.37 0.00 44.02 3.08
26 27 1.912971 GGCCCCTTACGATGAAGGT 59.087 57.895 12.37 0.00 44.02 3.50
27 28 1.227556 CGGCCCCTTACGATGAAGG 60.228 63.158 0.00 8.09 44.96 3.46
28 29 0.177141 TTCGGCCCCTTACGATGAAG 59.823 55.000 0.00 0.00 39.06 3.02
29 30 0.108041 GTTCGGCCCCTTACGATGAA 60.108 55.000 0.00 0.00 39.06 2.57
30 31 0.974010 AGTTCGGCCCCTTACGATGA 60.974 55.000 0.00 0.00 39.06 2.92
31 32 0.748450 TAGTTCGGCCCCTTACGATG 59.252 55.000 0.00 0.00 39.06 3.84
32 33 1.038280 CTAGTTCGGCCCCTTACGAT 58.962 55.000 0.00 0.00 39.06 3.73
33 34 0.323725 ACTAGTTCGGCCCCTTACGA 60.324 55.000 0.00 0.00 37.33 3.43
34 35 1.392589 TACTAGTTCGGCCCCTTACG 58.607 55.000 0.00 0.00 0.00 3.18
35 36 5.535753 TTTATACTAGTTCGGCCCCTTAC 57.464 43.478 0.00 0.00 0.00 2.34
36 37 5.662657 AGTTTTATACTAGTTCGGCCCCTTA 59.337 40.000 0.00 0.00 34.56 2.69
37 38 4.472470 AGTTTTATACTAGTTCGGCCCCTT 59.528 41.667 0.00 0.00 34.56 3.95
38 39 4.035814 AGTTTTATACTAGTTCGGCCCCT 58.964 43.478 0.00 0.00 34.56 4.79
39 40 4.375272 GAGTTTTATACTAGTTCGGCCCC 58.625 47.826 0.00 0.00 37.17 5.80
40 41 4.047142 CGAGTTTTATACTAGTTCGGCCC 58.953 47.826 0.00 0.00 37.17 5.80
41 42 3.488678 GCGAGTTTTATACTAGTTCGGCC 59.511 47.826 0.00 0.00 37.17 6.13
42 43 4.357996 AGCGAGTTTTATACTAGTTCGGC 58.642 43.478 0.00 0.00 37.17 5.54
43 44 5.276254 GCAAGCGAGTTTTATACTAGTTCGG 60.276 44.000 0.00 0.00 37.17 4.30
44 45 5.552104 CGCAAGCGAGTTTTATACTAGTTCG 60.552 44.000 9.11 3.38 42.83 3.95
45 46 5.287992 ACGCAAGCGAGTTTTATACTAGTTC 59.712 40.000 22.30 0.00 42.83 3.01
46 47 5.166398 ACGCAAGCGAGTTTTATACTAGTT 58.834 37.500 22.30 0.00 42.83 2.24
47 48 4.741342 ACGCAAGCGAGTTTTATACTAGT 58.259 39.130 22.30 0.00 42.83 2.57
48 49 4.206609 GGACGCAAGCGAGTTTTATACTAG 59.793 45.833 22.30 0.00 42.83 2.57
49 50 4.107622 GGACGCAAGCGAGTTTTATACTA 58.892 43.478 22.30 0.00 42.83 1.82
50 51 2.928116 GGACGCAAGCGAGTTTTATACT 59.072 45.455 22.30 0.00 42.83 2.12
51 52 2.030091 GGGACGCAAGCGAGTTTTATAC 59.970 50.000 22.30 0.00 42.83 1.47
52 53 2.093869 AGGGACGCAAGCGAGTTTTATA 60.094 45.455 22.30 0.00 42.83 0.98
53 54 1.084289 GGGACGCAAGCGAGTTTTAT 58.916 50.000 22.30 0.00 42.83 1.40
54 55 0.034337 AGGGACGCAAGCGAGTTTTA 59.966 50.000 22.30 0.00 42.83 1.52
55 56 0.818040 AAGGGACGCAAGCGAGTTTT 60.818 50.000 22.30 7.25 42.83 2.43
56 57 1.227853 AAGGGACGCAAGCGAGTTT 60.228 52.632 22.30 6.91 42.83 2.66
57 58 1.961277 CAAGGGACGCAAGCGAGTT 60.961 57.895 22.30 5.59 42.83 3.01
58 59 2.357517 CAAGGGACGCAAGCGAGT 60.358 61.111 22.30 0.00 42.83 4.18
59 60 2.357517 ACAAGGGACGCAAGCGAG 60.358 61.111 22.30 5.95 42.83 5.03
60 61 2.357034 GACAAGGGACGCAAGCGA 60.357 61.111 22.30 0.00 42.83 4.93
61 62 3.423154 GGACAAGGGACGCAAGCG 61.423 66.667 13.50 13.50 46.03 4.68
62 63 3.423154 CGGACAAGGGACGCAAGC 61.423 66.667 0.00 0.00 45.62 4.01
67 68 0.794473 GTTAAAGCGGACAAGGGACG 59.206 55.000 0.00 0.00 0.00 4.79
68 69 1.162698 GGTTAAAGCGGACAAGGGAC 58.837 55.000 0.00 0.00 0.00 4.46
69 70 0.037160 GGGTTAAAGCGGACAAGGGA 59.963 55.000 0.00 0.00 0.00 4.20
70 71 0.963856 GGGGTTAAAGCGGACAAGGG 60.964 60.000 0.00 0.00 0.00 3.95
71 72 0.037734 AGGGGTTAAAGCGGACAAGG 59.962 55.000 0.00 0.00 0.00 3.61
72 73 1.905637 AAGGGGTTAAAGCGGACAAG 58.094 50.000 0.00 0.00 0.00 3.16
73 74 2.368311 AAAGGGGTTAAAGCGGACAA 57.632 45.000 0.00 0.00 0.00 3.18
74 75 3.181441 ACTTAAAGGGGTTAAAGCGGACA 60.181 43.478 0.00 0.00 31.22 4.02
75 76 3.415212 ACTTAAAGGGGTTAAAGCGGAC 58.585 45.455 0.00 0.00 31.22 4.79
76 77 3.793819 ACTTAAAGGGGTTAAAGCGGA 57.206 42.857 0.00 0.00 31.22 5.54
77 78 5.335897 GGTTAACTTAAAGGGGTTAAAGCGG 60.336 44.000 5.42 0.00 38.88 5.52
78 79 5.335897 GGGTTAACTTAAAGGGGTTAAAGCG 60.336 44.000 5.42 0.00 38.88 4.68
79 80 5.335897 CGGGTTAACTTAAAGGGGTTAAAGC 60.336 44.000 5.42 0.00 38.88 3.51
80 81 5.769662 ACGGGTTAACTTAAAGGGGTTAAAG 59.230 40.000 5.42 0.00 38.88 1.85
81 82 5.700183 ACGGGTTAACTTAAAGGGGTTAAA 58.300 37.500 5.42 0.00 38.88 1.52
82 83 5.317600 ACGGGTTAACTTAAAGGGGTTAA 57.682 39.130 5.42 0.00 36.12 2.01
83 84 4.991789 ACGGGTTAACTTAAAGGGGTTA 57.008 40.909 5.42 0.00 0.00 2.85
84 85 3.882102 ACGGGTTAACTTAAAGGGGTT 57.118 42.857 5.42 0.00 0.00 4.11
85 86 3.307691 GCTACGGGTTAACTTAAAGGGGT 60.308 47.826 5.42 0.00 0.00 4.95
86 87 3.273434 GCTACGGGTTAACTTAAAGGGG 58.727 50.000 5.42 0.00 0.00 4.79
87 88 2.931969 CGCTACGGGTTAACTTAAAGGG 59.068 50.000 5.42 3.87 0.00 3.95
88 89 3.848726 TCGCTACGGGTTAACTTAAAGG 58.151 45.455 5.42 0.00 0.00 3.11
89 90 4.269363 CCATCGCTACGGGTTAACTTAAAG 59.731 45.833 5.42 0.47 0.00 1.85
90 91 4.183101 CCATCGCTACGGGTTAACTTAAA 58.817 43.478 5.42 0.00 0.00 1.52
91 92 3.784338 CCATCGCTACGGGTTAACTTAA 58.216 45.455 5.42 0.00 0.00 1.85
92 93 2.481795 GCCATCGCTACGGGTTAACTTA 60.482 50.000 5.42 0.00 0.00 2.24
93 94 1.741394 GCCATCGCTACGGGTTAACTT 60.741 52.381 5.42 0.00 0.00 2.66
94 95 0.179092 GCCATCGCTACGGGTTAACT 60.179 55.000 5.42 0.00 0.00 2.24
95 96 0.179092 AGCCATCGCTACGGGTTAAC 60.179 55.000 0.00 0.00 46.08 2.01
96 97 2.204748 AGCCATCGCTACGGGTTAA 58.795 52.632 0.00 0.00 46.08 2.01
97 98 3.944123 AGCCATCGCTACGGGTTA 58.056 55.556 0.00 0.00 46.08 2.85
106 107 0.872021 CTTAGTCGTGGAGCCATCGC 60.872 60.000 0.00 0.00 0.00 4.58
107 108 0.456221 ACTTAGTCGTGGAGCCATCG 59.544 55.000 0.00 0.00 0.00 3.84
108 109 1.202428 GGACTTAGTCGTGGAGCCATC 60.202 57.143 6.27 0.00 32.65 3.51
109 110 0.824759 GGACTTAGTCGTGGAGCCAT 59.175 55.000 6.27 0.00 32.65 4.40
110 111 0.251653 AGGACTTAGTCGTGGAGCCA 60.252 55.000 6.78 0.00 32.65 4.75
111 112 0.896226 AAGGACTTAGTCGTGGAGCC 59.104 55.000 8.39 0.00 32.65 4.70
112 113 2.231721 AGAAAGGACTTAGTCGTGGAGC 59.768 50.000 8.39 0.00 32.65 4.70
113 114 3.759618 AGAGAAAGGACTTAGTCGTGGAG 59.240 47.826 8.39 0.00 32.65 3.86
114 115 3.764218 AGAGAAAGGACTTAGTCGTGGA 58.236 45.455 8.39 0.00 32.65 4.02
115 116 4.096682 CCTAGAGAAAGGACTTAGTCGTGG 59.903 50.000 8.39 0.21 39.15 4.94
116 117 4.942483 TCCTAGAGAAAGGACTTAGTCGTG 59.058 45.833 8.39 0.00 40.86 4.35
117 118 5.176741 TCCTAGAGAAAGGACTTAGTCGT 57.823 43.478 6.27 3.84 40.86 4.34
126 127 3.034635 GGCAGATGTCCTAGAGAAAGGA 58.965 50.000 0.00 0.00 43.58 3.36
127 128 2.223923 CGGCAGATGTCCTAGAGAAAGG 60.224 54.545 0.00 0.00 38.06 3.11
128 129 2.428890 ACGGCAGATGTCCTAGAGAAAG 59.571 50.000 0.00 0.00 0.00 2.62
129 130 2.166459 CACGGCAGATGTCCTAGAGAAA 59.834 50.000 0.00 0.00 0.00 2.52
130 131 1.751351 CACGGCAGATGTCCTAGAGAA 59.249 52.381 0.00 0.00 0.00 2.87
131 132 1.064685 TCACGGCAGATGTCCTAGAGA 60.065 52.381 0.00 0.00 0.00 3.10
132 133 1.066303 GTCACGGCAGATGTCCTAGAG 59.934 57.143 0.00 0.00 0.00 2.43
133 134 1.103803 GTCACGGCAGATGTCCTAGA 58.896 55.000 0.00 0.00 0.00 2.43
134 135 0.817654 TGTCACGGCAGATGTCCTAG 59.182 55.000 0.00 0.00 0.00 3.02
135 136 1.262417 TTGTCACGGCAGATGTCCTA 58.738 50.000 0.00 0.00 0.00 2.94
136 137 0.396435 TTTGTCACGGCAGATGTCCT 59.604 50.000 0.00 0.00 0.00 3.85
137 138 1.069227 GTTTTGTCACGGCAGATGTCC 60.069 52.381 0.00 0.00 0.00 4.02
138 139 1.069227 GGTTTTGTCACGGCAGATGTC 60.069 52.381 0.00 0.00 0.00 3.06
139 140 0.951558 GGTTTTGTCACGGCAGATGT 59.048 50.000 0.00 0.00 0.00 3.06
140 141 0.950836 TGGTTTTGTCACGGCAGATG 59.049 50.000 0.00 0.00 0.00 2.90
141 142 0.951558 GTGGTTTTGTCACGGCAGAT 59.048 50.000 0.00 0.00 0.00 2.90
142 143 0.107410 AGTGGTTTTGTCACGGCAGA 60.107 50.000 0.00 0.00 39.86 4.26
143 144 1.263217 GTAGTGGTTTTGTCACGGCAG 59.737 52.381 0.00 0.00 39.86 4.85
144 145 1.301423 GTAGTGGTTTTGTCACGGCA 58.699 50.000 0.00 0.00 39.86 5.69
145 146 1.003223 GTGTAGTGGTTTTGTCACGGC 60.003 52.381 0.00 0.00 39.86 5.68
146 147 1.600485 GGTGTAGTGGTTTTGTCACGG 59.400 52.381 0.00 0.00 39.86 4.94
147 148 1.600485 GGGTGTAGTGGTTTTGTCACG 59.400 52.381 0.00 0.00 39.86 4.35
148 149 2.876550 GAGGGTGTAGTGGTTTTGTCAC 59.123 50.000 0.00 0.00 35.51 3.67
149 150 2.158726 GGAGGGTGTAGTGGTTTTGTCA 60.159 50.000 0.00 0.00 0.00 3.58
150 151 2.105993 AGGAGGGTGTAGTGGTTTTGTC 59.894 50.000 0.00 0.00 0.00 3.18
151 152 2.132686 AGGAGGGTGTAGTGGTTTTGT 58.867 47.619 0.00 0.00 0.00 2.83
152 153 2.951229 AGGAGGGTGTAGTGGTTTTG 57.049 50.000 0.00 0.00 0.00 2.44
153 154 5.391577 TTTTAGGAGGGTGTAGTGGTTTT 57.608 39.130 0.00 0.00 0.00 2.43
154 155 5.103813 ACTTTTTAGGAGGGTGTAGTGGTTT 60.104 40.000 0.00 0.00 0.00 3.27
155 156 4.414514 ACTTTTTAGGAGGGTGTAGTGGTT 59.585 41.667 0.00 0.00 0.00 3.67
156 157 3.978672 ACTTTTTAGGAGGGTGTAGTGGT 59.021 43.478 0.00 0.00 0.00 4.16
157 158 4.041198 TGACTTTTTAGGAGGGTGTAGTGG 59.959 45.833 0.00 0.00 0.00 4.00
158 159 5.223449 TGACTTTTTAGGAGGGTGTAGTG 57.777 43.478 0.00 0.00 0.00 2.74
159 160 7.182206 ACATATGACTTTTTAGGAGGGTGTAGT 59.818 37.037 10.38 0.00 0.00 2.73
160 161 7.565680 ACATATGACTTTTTAGGAGGGTGTAG 58.434 38.462 10.38 0.00 0.00 2.74
161 162 7.504926 ACATATGACTTTTTAGGAGGGTGTA 57.495 36.000 10.38 0.00 0.00 2.90
162 163 6.388619 ACATATGACTTTTTAGGAGGGTGT 57.611 37.500 10.38 0.00 0.00 4.16
163 164 7.112779 AGAACATATGACTTTTTAGGAGGGTG 58.887 38.462 10.38 0.00 0.00 4.61
164 165 7.272144 AGAACATATGACTTTTTAGGAGGGT 57.728 36.000 10.38 0.00 0.00 4.34
165 166 9.853177 ATTAGAACATATGACTTTTTAGGAGGG 57.147 33.333 10.38 0.00 0.00 4.30
173 174 9.423061 GGCACAAAATTAGAACATATGACTTTT 57.577 29.630 10.38 4.56 0.00 2.27
174 175 8.034804 GGGCACAAAATTAGAACATATGACTTT 58.965 33.333 10.38 0.00 0.00 2.66
175 176 7.363793 GGGGCACAAAATTAGAACATATGACTT 60.364 37.037 10.38 0.00 0.00 3.01
176 177 6.096846 GGGGCACAAAATTAGAACATATGACT 59.903 38.462 10.38 10.57 0.00 3.41
177 178 6.273071 GGGGCACAAAATTAGAACATATGAC 58.727 40.000 10.38 3.20 0.00 3.06
205 206 2.894387 GAGAGGATGCGTGCAGGC 60.894 66.667 23.98 23.98 0.00 4.85
206 207 2.202987 GGAGAGGATGCGTGCAGG 60.203 66.667 1.01 1.01 0.00 4.85
207 208 2.202987 GGGAGAGGATGCGTGCAG 60.203 66.667 0.00 0.00 0.00 4.41
242 243 3.965258 TGGATTGTGGCCGCTGGT 61.965 61.111 18.96 2.88 0.00 4.00
245 246 3.628646 GAGGTGGATTGTGGCCGCT 62.629 63.158 18.96 0.00 36.21 5.52
265 266 0.248743 TATTCACGACGATCGGGTGC 60.249 55.000 26.90 11.57 44.95 5.01
266 267 2.051423 CATATTCACGACGATCGGGTG 58.949 52.381 26.21 26.21 44.95 4.61
267 268 1.951602 TCATATTCACGACGATCGGGT 59.048 47.619 20.98 13.98 44.95 5.28
269 270 3.821841 TCATCATATTCACGACGATCGG 58.178 45.455 20.98 4.82 45.59 4.18
273 274 3.990318 AGCTCATCATATTCACGACGA 57.010 42.857 0.00 0.00 0.00 4.20
275 276 4.447054 CAGGAAGCTCATCATATTCACGAC 59.553 45.833 0.00 0.00 0.00 4.34
284 285 2.573369 GTGATGCAGGAAGCTCATCAT 58.427 47.619 15.66 3.18 45.43 2.45
305 306 1.533129 GCGTCAAAGTGGTTCCAACAC 60.533 52.381 0.00 0.00 39.10 3.32
306 307 0.736053 GCGTCAAAGTGGTTCCAACA 59.264 50.000 0.00 0.00 0.00 3.33
321 322 1.956620 GCAGCAAAGGTAGACGCGTC 61.957 60.000 31.30 31.30 0.00 5.19
324 325 2.399356 GGGCAGCAAAGGTAGACGC 61.399 63.158 0.00 0.00 0.00 5.19
332 333 0.257039 ATCCTACCTGGGCAGCAAAG 59.743 55.000 0.00 0.00 36.20 2.77
338 339 1.043116 CAGACGATCCTACCTGGGCA 61.043 60.000 0.00 0.00 36.20 5.36
357 358 1.913419 TCCCCACTTCCTCCACAATAC 59.087 52.381 0.00 0.00 0.00 1.89
359 360 0.698818 GTCCCCACTTCCTCCACAAT 59.301 55.000 0.00 0.00 0.00 2.71
380 381 1.174783 TGTAGAAGTCTGGACGGCTC 58.825 55.000 0.00 0.00 36.20 4.70
395 396 1.139058 CCTCCTTTCACCCCGATGTAG 59.861 57.143 0.00 0.00 0.00 2.74
397 398 0.546747 TCCTCCTTTCACCCCGATGT 60.547 55.000 0.00 0.00 0.00 3.06
405 406 2.303022 TCATGTGTCCTCCTCCTTTCAC 59.697 50.000 0.00 0.00 0.00 3.18
406 407 2.619931 TCATGTGTCCTCCTCCTTTCA 58.380 47.619 0.00 0.00 0.00 2.69
408 409 3.184628 TCATCATGTGTCCTCCTCCTTT 58.815 45.455 0.00 0.00 0.00 3.11
410 411 2.557555 TCATCATGTGTCCTCCTCCT 57.442 50.000 0.00 0.00 0.00 3.69
411 412 2.744494 GCTTCATCATGTGTCCTCCTCC 60.744 54.545 0.00 0.00 0.00 4.30
412 413 2.559440 GCTTCATCATGTGTCCTCCTC 58.441 52.381 0.00 0.00 0.00 3.71
424 425 2.055633 TAGCGGACGGGCTTCATCA 61.056 57.895 3.24 0.00 41.39 3.07
429 430 2.264794 CAAGTAGCGGACGGGCTT 59.735 61.111 3.24 0.00 41.39 4.35
453 454 4.111016 TACACGAGAGCACGGCGG 62.111 66.667 13.24 0.66 37.61 6.13
459 460 4.111016 CCGGCGTACACGAGAGCA 62.111 66.667 6.01 0.00 43.02 4.26
475 476 4.413800 AAAAATCACGGCGCCGCC 62.414 61.111 46.22 20.42 46.75 6.13
476 477 3.171911 CAAAAATCACGGCGCCGC 61.172 61.111 46.22 11.80 44.19 6.53
477 478 1.371145 AACAAAAATCACGGCGCCG 60.371 52.632 44.88 44.88 46.03 6.46
478 479 0.318275 TCAACAAAAATCACGGCGCC 60.318 50.000 19.07 19.07 0.00 6.53
479 480 1.451651 CTTCAACAAAAATCACGGCGC 59.548 47.619 6.90 0.00 0.00 6.53
501 502 4.007940 CCAACACGACGGCGGTTG 62.008 66.667 27.62 27.62 42.74 3.77
512 513 1.272554 CCTAGACCCCCTCCCAACAC 61.273 65.000 0.00 0.00 0.00 3.32
513 514 1.082206 CCTAGACCCCCTCCCAACA 59.918 63.158 0.00 0.00 0.00 3.33
516 517 4.103928 GGCCTAGACCCCCTCCCA 62.104 72.222 0.00 0.00 0.00 4.37
538 539 3.744942 GTCATTGATCGTCATCTCCCATG 59.255 47.826 0.00 0.00 0.00 3.66
539 540 3.553715 CGTCATTGATCGTCATCTCCCAT 60.554 47.826 0.00 0.00 0.00 4.00
547 548 2.195922 CTGCATCGTCATTGATCGTCA 58.804 47.619 0.00 0.00 0.00 4.35
548 549 1.070975 GCTGCATCGTCATTGATCGTC 60.071 52.381 0.00 0.00 0.00 4.20
550 551 0.234106 GGCTGCATCGTCATTGATCG 59.766 55.000 0.50 0.00 0.00 3.69
560 561 3.274586 CATCCCACGGCTGCATCG 61.275 66.667 0.50 7.86 0.00 3.84
562 563 3.731728 ACCATCCCACGGCTGCAT 61.732 61.111 0.50 0.00 0.00 3.96
571 572 3.716195 CCAGTCGCCACCATCCCA 61.716 66.667 0.00 0.00 0.00 4.37
579 580 2.202919 CGCATGATCCAGTCGCCA 60.203 61.111 0.00 0.00 0.00 5.69
582 583 0.665298 TCTCTCGCATGATCCAGTCG 59.335 55.000 0.00 0.00 0.00 4.18
587 588 3.065655 CCTTGATTCTCTCGCATGATCC 58.934 50.000 0.00 0.00 0.00 3.36
591 592 2.609427 TCCCTTGATTCTCTCGCATG 57.391 50.000 0.00 0.00 0.00 4.06
596 597 4.396522 CATCCCATTCCCTTGATTCTCTC 58.603 47.826 0.00 0.00 0.00 3.20
606 607 1.763770 GCGATCCATCCCATTCCCT 59.236 57.895 0.00 0.00 0.00 4.20
614 615 0.742990 TTTGACCACGCGATCCATCC 60.743 55.000 15.93 0.00 0.00 3.51
622 623 0.025001 GACATCGATTTGACCACGCG 59.975 55.000 3.53 3.53 0.00 6.01
624 625 3.303495 GTGTAGACATCGATTTGACCACG 59.697 47.826 0.00 0.00 0.00 4.94
625 626 3.303495 CGTGTAGACATCGATTTGACCAC 59.697 47.826 0.00 0.00 0.00 4.16
639 640 2.115659 CTTCGCGGATGTCGTGTAGAC 61.116 57.143 6.13 0.00 45.42 2.59
640 641 0.098200 CTTCGCGGATGTCGTGTAGA 59.902 55.000 6.13 0.00 45.42 2.59
652 653 0.526524 TTTGCACAAAACCTTCGCGG 60.527 50.000 6.13 0.00 39.35 6.46
655 656 2.357637 TCCTCTTTGCACAAAACCTTCG 59.642 45.455 0.00 0.00 0.00 3.79
668 669 4.469227 TCATCTCTTCTTCCCTCCTCTTTG 59.531 45.833 0.00 0.00 0.00 2.77
680 681 4.401925 CCCACAAAAGGTCATCTCTTCTT 58.598 43.478 0.00 0.00 0.00 2.52
727 737 2.587340 TGGCGTGTTGACCACTGT 59.413 55.556 0.00 0.00 42.20 3.55
731 741 4.920112 CGGGTGGCGTGTTGACCA 62.920 66.667 0.00 0.00 0.00 4.02
746 756 1.086696 ATCCGATTTGACTTGCACGG 58.913 50.000 0.00 0.00 41.39 4.94
760 770 3.207547 CTATCCGCACCGCATCCGA 62.208 63.158 0.00 0.00 36.29 4.55
762 772 2.357517 CCTATCCGCACCGCATCC 60.358 66.667 0.00 0.00 0.00 3.51
768 778 2.279517 CGCAGTCCTATCCGCACC 60.280 66.667 0.00 0.00 0.00 5.01
773 783 0.530744 TGTCACACGCAGTCCTATCC 59.469 55.000 0.00 0.00 41.61 2.59
786 796 1.832883 AGTTTGCCAAGTGTGTCACA 58.167 45.000 0.18 0.18 36.74 3.58
800 810 7.712797 ACACACATTTAGGTCCTAAAAGTTTG 58.287 34.615 28.23 28.23 39.28 2.93
804 814 8.410141 TGAAAACACACATTTAGGTCCTAAAAG 58.590 33.333 24.60 22.29 39.03 2.27
805 815 8.294954 TGAAAACACACATTTAGGTCCTAAAA 57.705 30.769 24.60 10.99 39.03 1.52
823 833 7.928307 ACGTAGTCCTAGTACTATGAAAACA 57.072 36.000 18.61 0.00 40.11 2.83
824 834 9.928236 CTAACGTAGTCCTAGTACTATGAAAAC 57.072 37.037 18.61 9.30 45.00 2.43
834 844 3.545703 GGGTGCTAACGTAGTCCTAGTA 58.454 50.000 0.00 0.00 45.00 1.82
836 846 1.680207 GGGGTGCTAACGTAGTCCTAG 59.320 57.143 0.00 0.00 45.00 3.02
845 855 5.576447 AAATTATTTGAGGGGTGCTAACG 57.424 39.130 0.00 0.00 0.00 3.18
846 856 6.092122 GCAAAAATTATTTGAGGGGTGCTAAC 59.908 38.462 13.72 0.00 0.00 2.34
849 859 4.041444 TGCAAAAATTATTTGAGGGGTGCT 59.959 37.500 13.72 0.00 30.07 4.40
850 860 4.154015 GTGCAAAAATTATTTGAGGGGTGC 59.846 41.667 13.72 0.00 0.00 5.01
859 869 8.620116 AATAGCCACAAGTGCAAAAATTATTT 57.380 26.923 0.00 0.00 0.00 1.40
869 879 3.981071 AGTAGAATAGCCACAAGTGCA 57.019 42.857 0.00 0.00 0.00 4.57
871 881 8.268850 ACAAAATAGTAGAATAGCCACAAGTG 57.731 34.615 0.00 0.00 0.00 3.16
900 911 9.877178 AATACTGAGTTATGAAGGTCTACTTTG 57.123 33.333 0.00 0.00 40.21 2.77
912 923 9.184523 CAAATACCCCAAAATACTGAGTTATGA 57.815 33.333 0.00 0.00 0.00 2.15
916 927 5.719563 CCCAAATACCCCAAAATACTGAGTT 59.280 40.000 0.00 0.00 0.00 3.01
918 929 4.649218 CCCCAAATACCCCAAAATACTGAG 59.351 45.833 0.00 0.00 0.00 3.35
957 1395 0.905357 TCTTCCTGCCTTGTAGAGCC 59.095 55.000 0.00 0.00 0.00 4.70
988 1430 0.318762 GCCTCCATGACTCGTATCCC 59.681 60.000 0.00 0.00 0.00 3.85
992 1434 1.101635 CCTCGCCTCCATGACTCGTA 61.102 60.000 0.00 0.00 0.00 3.43
1593 2076 1.033746 CGGGAGATGCTTGTGCCAAT 61.034 55.000 7.97 0.00 38.71 3.16
1617 2100 0.830648 CCTAACAAGCCGATCCAGGA 59.169 55.000 0.00 0.00 0.00 3.86
1632 2115 1.810151 GAAGCGCACAATGGAACCTAA 59.190 47.619 11.47 0.00 0.00 2.69
1648 2131 2.268298 CAATGATGCCAAGCTTGAAGC 58.732 47.619 28.05 22.26 42.84 3.86
1665 2148 7.759433 CACTAAAATTTCAGGTAAATCGCCAAT 59.241 33.333 0.00 0.00 36.76 3.16
1670 2153 7.526608 TCAGCACTAAAATTTCAGGTAAATCG 58.473 34.615 0.00 0.00 36.76 3.34
1744 2227 3.469008 TTATCCATGACTAAGCCGTGG 57.531 47.619 0.00 0.00 41.03 4.94
1759 2242 9.067986 CATAGTTTCAACCCCTAAGAATTATCC 57.932 37.037 0.00 0.00 0.00 2.59
1761 2244 9.408648 CACATAGTTTCAACCCCTAAGAATTAT 57.591 33.333 0.00 0.00 0.00 1.28
1763 2246 7.176690 CACACATAGTTTCAACCCCTAAGAATT 59.823 37.037 0.00 0.00 0.00 2.17
1785 2268 4.022242 TGCTAGAACAGGAGAACTACACAC 60.022 45.833 0.00 0.00 0.00 3.82
1823 2306 3.069586 CACAACTTACAGAGAGACCACCA 59.930 47.826 0.00 0.00 0.00 4.17
1849 2336 1.971695 GCCTCCGGTTTGAACAGGG 60.972 63.158 12.11 5.31 43.34 4.45
1880 2367 3.440173 CACAACTAACGGCAAAGGATCAT 59.560 43.478 0.00 0.00 0.00 2.45
1889 2376 0.319083 ATCGACCACAACTAACGGCA 59.681 50.000 0.00 0.00 0.00 5.69
1892 2379 2.066262 AGCAATCGACCACAACTAACG 58.934 47.619 0.00 0.00 0.00 3.18
1931 2418 3.788142 ACCAGACCATAATTGGAGTCCAT 59.212 43.478 14.00 0.82 46.92 3.41
1940 2427 4.463891 CCTCAAAGCAACCAGACCATAATT 59.536 41.667 0.00 0.00 0.00 1.40
1967 2454 5.744345 CCGACTAACATATCAGTTCACAGAC 59.256 44.000 0.00 0.00 33.07 3.51
1974 2461 5.670792 TGAACCCGACTAACATATCAGTT 57.329 39.130 0.00 0.00 35.55 3.16
1995 2482 3.507233 TGCAAAAACTAGCCATCTCCTTG 59.493 43.478 0.00 0.00 0.00 3.61
2071 2558 3.317711 CCTCGATGATAACTCAGCAGTCT 59.682 47.826 0.00 0.00 37.67 3.24
2074 2561 2.625314 TCCCTCGATGATAACTCAGCAG 59.375 50.000 0.00 0.00 37.67 4.24
2093 2581 5.639082 CCAAATAAAGAACCTGCATGTTTCC 59.361 40.000 8.84 0.00 0.00 3.13
2101 2589 3.511540 AGAAGGCCAAATAAAGAACCTGC 59.488 43.478 5.01 0.00 0.00 4.85
2252 2741 5.651530 ACTTTCACTATGTCCAGATGTACG 58.348 41.667 0.00 0.00 0.00 3.67
2489 2978 9.737844 AGTTGGCATTTGGAAAAATAAATGTAT 57.262 25.926 10.30 0.00 43.03 2.29
2499 2988 4.813697 GTGCTTTAGTTGGCATTTGGAAAA 59.186 37.500 0.00 0.00 40.66 2.29
2589 3302 6.152831 GCACCAAAGACCACCTAATAAATCTT 59.847 38.462 0.00 0.00 0.00 2.40
2622 3335 5.850557 TGAATACCCGACCTACGAATTAA 57.149 39.130 0.00 0.00 45.77 1.40
2721 3434 4.333926 GCAAACAGACCATAATCAGAGTCC 59.666 45.833 0.00 0.00 0.00 3.85
2828 3541 5.684550 AAACTAGAATGGTTCGGTTCAAC 57.315 39.130 0.00 0.00 39.61 3.18
2850 3563 7.785033 TCTGCATTCTGAGATGAACACTAATA 58.215 34.615 0.00 0.00 0.00 0.98
2969 3682 4.061596 GAGGCAGAATAGCATGTCCTTAC 58.938 47.826 0.00 0.00 35.83 2.34
2975 3688 6.462500 CACTATTAGAGGCAGAATAGCATGT 58.538 40.000 10.98 0.00 38.63 3.21
2989 3702 6.478344 GCTGTGAATCTTGTCCACTATTAGAG 59.522 42.308 0.00 0.00 0.00 2.43
2991 3704 6.036517 GTGCTGTGAATCTTGTCCACTATTAG 59.963 42.308 0.00 0.00 0.00 1.73
3025 3738 2.683362 TGTACGTCATCAGCCTACAGAG 59.317 50.000 0.00 0.00 0.00 3.35
3052 3765 5.412594 TGAGTTGCAAATCCTCACTATGTTC 59.587 40.000 22.91 0.00 30.58 3.18
3064 3800 6.441274 TCAAAGAGACAATGAGTTGCAAATC 58.559 36.000 19.55 19.55 38.96 2.17
3094 3830 0.784778 GACAGTGTGCAACGTAGAGC 59.215 55.000 0.00 0.00 42.39 4.09
3101 3837 1.668419 AAGGTCTGACAGTGTGCAAC 58.332 50.000 10.38 0.00 37.35 4.17
3275 4024 3.978672 AGGTTGGTAACTTGTACTTCCCT 59.021 43.478 0.00 0.00 37.61 4.20
3279 4028 4.099881 TCGTCAGGTTGGTAACTTGTACTT 59.900 41.667 4.16 0.00 39.30 2.24
3452 4212 2.065993 ACTTACTACACAGCACTGCG 57.934 50.000 0.00 0.00 0.00 5.18
3480 4240 7.914871 TGACAAACATGATTGTGTCAGTTTTAG 59.085 33.333 24.12 0.00 43.31 1.85
3564 4324 8.082242 AGCAAACAAAACAGGTATTTCATAGAC 58.918 33.333 0.00 0.00 0.00 2.59
3788 4679 9.166222 TCTCTAAAAGGCCATATATACCAAGAA 57.834 33.333 5.01 0.00 0.00 2.52
3803 4696 7.742556 ATGCTTTATCTCATCTCTAAAAGGC 57.257 36.000 0.00 0.00 0.00 4.35
3828 4721 7.052873 ACAGACAGCTATAATGAGCAGAAAAT 58.947 34.615 0.00 0.00 45.43 1.82
3878 4771 6.265196 TCAAAGGATCACAACTGTTTTAGCAT 59.735 34.615 0.00 0.00 0.00 3.79
4016 4919 3.554934 ACAGTTCAAGTCCAAATGAGCA 58.445 40.909 0.00 0.00 30.19 4.26
4043 4946 3.054948 ACTGCAAAATTAGCATGGGCAAT 60.055 39.130 6.02 0.00 44.61 3.56
4056 4959 6.265196 TGAGAATGTGTAAGGAACTGCAAAAT 59.735 34.615 0.00 0.00 40.86 1.82
4106 5011 2.464459 GGTGAAGCCAATCGCGGAG 61.464 63.158 6.13 0.00 44.76 4.63
4193 5098 3.072915 ACATCACAAGATCCTTCCACACA 59.927 43.478 0.00 0.00 30.20 3.72
4208 5113 0.946700 CCGCCACGTTGTACATCACA 60.947 55.000 0.00 0.00 34.51 3.58
4244 5149 3.181440 GCAGAATCTACCCCATGAATCCA 60.181 47.826 0.00 0.00 0.00 3.41
4268 5173 1.670087 CCTTCTCGAAGCGATGTGTGT 60.670 52.381 1.13 0.00 37.11 3.72
4387 5300 1.103398 ACAACTGCTCAAGTGCCCAC 61.103 55.000 0.00 0.00 39.81 4.61
4509 5426 5.244626 ACAAGCCAGCTCTTCAATACATTTT 59.755 36.000 0.00 0.00 0.00 1.82
4561 5478 8.500753 TGTTAAGTAGAACTTGTTTGACACAT 57.499 30.769 2.59 0.00 39.11 3.21
4629 5546 0.250553 ACGCAAAATCCCTTCGGTCA 60.251 50.000 0.00 0.00 0.00 4.02
4636 5553 2.014128 CGTATTCCACGCAAAATCCCT 58.986 47.619 0.00 0.00 45.03 4.20
4646 5563 4.832576 CAGATTTCCTGCCGTATTCCACG 61.833 52.174 0.00 0.00 41.14 4.94
4648 5565 2.421388 CCAGATTTCCTGCCGTATTCCA 60.421 50.000 0.00 0.00 41.57 3.53
4655 5572 0.036010 ACTGTCCAGATTTCCTGCCG 60.036 55.000 0.40 0.00 41.57 5.69
4658 5575 2.486472 AGCACTGTCCAGATTTCCTG 57.514 50.000 0.40 0.00 42.55 3.86
4659 5576 3.181440 TGAAAGCACTGTCCAGATTTCCT 60.181 43.478 0.40 0.00 32.96 3.36
4672 5589 2.092429 TGGGTGAAGAACTGAAAGCACT 60.092 45.455 0.00 0.00 37.60 4.40
4676 5593 2.930950 TGGTGGGTGAAGAACTGAAAG 58.069 47.619 0.00 0.00 42.29 2.62
4685 5602 1.247567 GTGGTTGATGGTGGGTGAAG 58.752 55.000 0.00 0.00 0.00 3.02
4686 5603 0.178975 GGTGGTTGATGGTGGGTGAA 60.179 55.000 0.00 0.00 0.00 3.18
4688 5605 0.251742 ATGGTGGTTGATGGTGGGTG 60.252 55.000 0.00 0.00 0.00 4.61
4689 5606 0.039618 GATGGTGGTTGATGGTGGGT 59.960 55.000 0.00 0.00 0.00 4.51
4690 5607 1.031571 CGATGGTGGTTGATGGTGGG 61.032 60.000 0.00 0.00 0.00 4.61
4691 5608 0.322456 ACGATGGTGGTTGATGGTGG 60.322 55.000 0.00 0.00 0.00 4.61
4692 5609 1.468520 GAACGATGGTGGTTGATGGTG 59.531 52.381 0.00 0.00 0.00 4.17
4693 5610 1.351017 AGAACGATGGTGGTTGATGGT 59.649 47.619 0.00 0.00 0.00 3.55
4694 5611 2.113860 AGAACGATGGTGGTTGATGG 57.886 50.000 0.00 0.00 0.00 3.51
4695 5612 3.753272 AGAAAGAACGATGGTGGTTGATG 59.247 43.478 0.00 0.00 0.00 3.07
4696 5613 4.021102 AGAAAGAACGATGGTGGTTGAT 57.979 40.909 0.00 0.00 0.00 2.57
4700 5617 4.618920 AGTAAGAAAGAACGATGGTGGT 57.381 40.909 0.00 0.00 0.00 4.16
4721 5638 5.128992 TGCGTGACACTAGATGTAAGAAA 57.871 39.130 3.68 0.00 43.56 2.52
4723 5640 4.983671 ATGCGTGACACTAGATGTAAGA 57.016 40.909 3.68 0.00 43.56 2.10
4724 5641 4.259970 GCAATGCGTGACACTAGATGTAAG 60.260 45.833 3.68 0.00 43.56 2.34
4725 5642 3.616821 GCAATGCGTGACACTAGATGTAA 59.383 43.478 3.68 0.00 43.56 2.41
4726 5643 3.119137 AGCAATGCGTGACACTAGATGTA 60.119 43.478 3.68 0.00 43.56 2.29
4728 5645 2.274437 AGCAATGCGTGACACTAGATG 58.726 47.619 3.68 0.00 0.00 2.90
4729 5646 2.680312 AGCAATGCGTGACACTAGAT 57.320 45.000 3.68 0.00 0.00 1.98
4739 5656 3.976169 ACATTTGTTGTTAGCAATGCGT 58.024 36.364 0.00 0.00 33.74 5.24
4751 5668 9.659830 GGTAGTGTAGAAAGTAAACATTTGTTG 57.340 33.333 0.00 0.00 38.44 3.33
4767 5688 1.402968 GGATCGCGTTGGTAGTGTAGA 59.597 52.381 5.77 0.00 0.00 2.59
4772 5693 0.968901 TGGAGGATCGCGTTGGTAGT 60.969 55.000 5.77 0.00 34.37 2.73
4783 5704 0.464373 TGCTTGCCGAATGGAGGATC 60.464 55.000 0.00 0.00 37.49 3.36
4873 5795 2.917971 GCGCACTACTGTTACAGAGAAG 59.082 50.000 20.07 14.38 35.18 2.85
4904 5826 2.097466 CAGTGGTTTTCTGAACGCTGTT 59.903 45.455 10.29 0.00 35.20 3.16
4933 5855 7.097192 CCTGAAAATATGCTATTAGCGTCCTA 58.903 38.462 13.58 0.00 46.26 2.94
4935 5857 5.122396 CCCTGAAAATATGCTATTAGCGTCC 59.878 44.000 13.58 1.65 46.26 4.79
4936 5858 5.122396 CCCCTGAAAATATGCTATTAGCGTC 59.878 44.000 13.58 0.71 46.26 5.19
4937 5859 5.003804 CCCCTGAAAATATGCTATTAGCGT 58.996 41.667 14.53 14.53 46.26 5.07
4951 5922 0.323360 AATAGCGCTGCCCCTGAAAA 60.323 50.000 22.90 0.00 0.00 2.29
4953 5924 0.323360 AAAATAGCGCTGCCCCTGAA 60.323 50.000 22.90 0.00 0.00 3.02
4964 5935 8.775273 TGCTATAGCGTGCTATACAAAATAGCG 61.775 40.741 19.55 6.19 45.51 4.26
4986 5957 9.443323 TCCTTAAATTGCGCTATTAATATGCTA 57.557 29.630 17.22 11.57 0.00 3.49
4987 5958 8.237267 GTCCTTAAATTGCGCTATTAATATGCT 58.763 33.333 17.22 2.99 0.00 3.79
4988 5959 7.216317 CGTCCTTAAATTGCGCTATTAATATGC 59.784 37.037 17.22 11.14 0.00 3.14
4989 5960 7.692291 CCGTCCTTAAATTGCGCTATTAATATG 59.308 37.037 17.22 9.15 0.00 1.78
4990 5961 7.389607 ACCGTCCTTAAATTGCGCTATTAATAT 59.610 33.333 17.22 4.75 0.00 1.28
4991 5962 6.707161 ACCGTCCTTAAATTGCGCTATTAATA 59.293 34.615 17.22 4.83 0.00 0.98
4992 5963 5.529800 ACCGTCCTTAAATTGCGCTATTAAT 59.470 36.000 17.22 5.81 0.00 1.40
4993 5964 4.877251 ACCGTCCTTAAATTGCGCTATTAA 59.123 37.500 17.22 13.41 0.00 1.40
4994 5965 4.271533 CACCGTCCTTAAATTGCGCTATTA 59.728 41.667 17.22 6.75 0.00 0.98
4995 5966 3.064820 CACCGTCCTTAAATTGCGCTATT 59.935 43.478 11.38 11.38 0.00 1.73
4996 5967 2.612212 CACCGTCCTTAAATTGCGCTAT 59.388 45.455 9.73 2.86 0.00 2.97
4997 5968 2.004017 CACCGTCCTTAAATTGCGCTA 58.996 47.619 9.73 0.00 0.00 4.26
4998 5969 0.802494 CACCGTCCTTAAATTGCGCT 59.198 50.000 9.73 0.00 0.00 5.92
4999 5970 0.796870 GCACCGTCCTTAAATTGCGC 60.797 55.000 0.00 0.00 0.00 6.09
5000 5971 0.802494 AGCACCGTCCTTAAATTGCG 59.198 50.000 0.00 0.00 35.10 4.85
5001 5972 4.632538 AATAGCACCGTCCTTAAATTGC 57.367 40.909 0.00 0.00 0.00 3.56
5002 5973 6.386654 ACAAAATAGCACCGTCCTTAAATTG 58.613 36.000 0.00 0.00 0.00 2.32
5003 5974 6.584185 ACAAAATAGCACCGTCCTTAAATT 57.416 33.333 0.00 0.00 0.00 1.82
5004 5975 7.875327 ATACAAAATAGCACCGTCCTTAAAT 57.125 32.000 0.00 0.00 0.00 1.40
5005 5976 7.011669 GCTATACAAAATAGCACCGTCCTTAAA 59.988 37.037 11.21 0.00 44.64 1.52
5006 5977 6.480981 GCTATACAAAATAGCACCGTCCTTAA 59.519 38.462 11.21 0.00 44.64 1.85
5007 5978 5.987347 GCTATACAAAATAGCACCGTCCTTA 59.013 40.000 11.21 0.00 44.64 2.69
5008 5979 4.814771 GCTATACAAAATAGCACCGTCCTT 59.185 41.667 11.21 0.00 44.64 3.36
5009 5980 4.377897 GCTATACAAAATAGCACCGTCCT 58.622 43.478 11.21 0.00 44.64 3.85
5010 5981 4.727235 GCTATACAAAATAGCACCGTCC 57.273 45.455 11.21 0.00 44.64 4.79
5017 5988 8.782533 AAAAATAGCGTGCTATACAAAATAGC 57.217 30.769 14.33 9.54 45.28 2.97
5045 6016 1.405661 GGGAGTAGGTTTCTGCGAAGG 60.406 57.143 0.00 0.00 0.00 3.46
5047 6018 1.001633 GTGGGAGTAGGTTTCTGCGAA 59.998 52.381 0.00 0.00 0.00 4.70
5049 6020 0.320374 TGTGGGAGTAGGTTTCTGCG 59.680 55.000 0.00 0.00 0.00 5.18
5065 6036 0.740149 TGTGAAGGCTTGCTTGTGTG 59.260 50.000 3.46 0.00 0.00 3.82
5076 6047 3.305608 CCCATGAAGTTTCTTGTGAAGGC 60.306 47.826 0.00 0.00 33.28 4.35
5081 6052 4.099266 TGTTTCCCCATGAAGTTTCTTGTG 59.901 41.667 0.00 0.00 33.63 3.33
5082 6053 4.285863 TGTTTCCCCATGAAGTTTCTTGT 58.714 39.130 0.00 0.00 33.63 3.16
5110 6081 4.320608 AAAATTTGAGCGCTTTCCTTGA 57.679 36.364 13.26 0.00 0.00 3.02
5148 6120 3.102052 TGGTCAGTTTGAGTACGGAAC 57.898 47.619 0.00 0.00 31.64 3.62
5149 6121 3.385433 TCTTGGTCAGTTTGAGTACGGAA 59.615 43.478 0.00 0.00 0.00 4.30
5150 6122 2.960384 TCTTGGTCAGTTTGAGTACGGA 59.040 45.455 0.00 0.00 0.00 4.69
5151 6123 3.380479 TCTTGGTCAGTTTGAGTACGG 57.620 47.619 0.00 0.00 0.00 4.02
5152 6124 3.741344 CCTTCTTGGTCAGTTTGAGTACG 59.259 47.826 0.00 0.00 0.00 3.67
5153 6125 4.957296 TCCTTCTTGGTCAGTTTGAGTAC 58.043 43.478 0.00 0.00 37.07 2.73
5154 6126 5.623956 TTCCTTCTTGGTCAGTTTGAGTA 57.376 39.130 0.00 0.00 37.07 2.59
5155 6127 4.503714 TTCCTTCTTGGTCAGTTTGAGT 57.496 40.909 0.00 0.00 37.07 3.41
5156 6128 4.884164 AGTTTCCTTCTTGGTCAGTTTGAG 59.116 41.667 0.00 0.00 37.07 3.02
5157 6129 4.855340 AGTTTCCTTCTTGGTCAGTTTGA 58.145 39.130 0.00 0.00 37.07 2.69
5158 6130 4.640201 TGAGTTTCCTTCTTGGTCAGTTTG 59.360 41.667 0.00 0.00 37.07 2.93
5159 6131 4.855340 TGAGTTTCCTTCTTGGTCAGTTT 58.145 39.130 0.00 0.00 37.07 2.66
5160 6132 4.503714 TGAGTTTCCTTCTTGGTCAGTT 57.496 40.909 0.00 0.00 37.07 3.16
5161 6133 4.503714 TTGAGTTTCCTTCTTGGTCAGT 57.496 40.909 0.00 0.00 37.07 3.41
5162 6134 5.221126 CCTTTTGAGTTTCCTTCTTGGTCAG 60.221 44.000 0.00 0.00 37.07 3.51
5163 6135 4.644685 CCTTTTGAGTTTCCTTCTTGGTCA 59.355 41.667 0.00 0.00 37.07 4.02
5164 6136 4.499865 GCCTTTTGAGTTTCCTTCTTGGTC 60.500 45.833 0.00 0.00 37.07 4.02
5165 6137 3.384789 GCCTTTTGAGTTTCCTTCTTGGT 59.615 43.478 0.00 0.00 37.07 3.67
5166 6138 3.384467 TGCCTTTTGAGTTTCCTTCTTGG 59.616 43.478 0.00 0.00 37.10 3.61
5167 6139 4.339247 TCTGCCTTTTGAGTTTCCTTCTTG 59.661 41.667 0.00 0.00 0.00 3.02
5168 6140 4.536765 TCTGCCTTTTGAGTTTCCTTCTT 58.463 39.130 0.00 0.00 0.00 2.52
5169 6141 4.140536 CTCTGCCTTTTGAGTTTCCTTCT 58.859 43.478 0.00 0.00 0.00 2.85
5170 6142 3.254411 CCTCTGCCTTTTGAGTTTCCTTC 59.746 47.826 0.00 0.00 0.00 3.46
5171 6143 3.225940 CCTCTGCCTTTTGAGTTTCCTT 58.774 45.455 0.00 0.00 0.00 3.36
5172 6144 2.175715 ACCTCTGCCTTTTGAGTTTCCT 59.824 45.455 0.00 0.00 0.00 3.36
5173 6145 2.294512 CACCTCTGCCTTTTGAGTTTCC 59.705 50.000 0.00 0.00 0.00 3.13
5174 6146 2.294512 CCACCTCTGCCTTTTGAGTTTC 59.705 50.000 0.00 0.00 0.00 2.78
5175 6147 2.091885 TCCACCTCTGCCTTTTGAGTTT 60.092 45.455 0.00 0.00 0.00 2.66
5176 6148 1.494721 TCCACCTCTGCCTTTTGAGTT 59.505 47.619 0.00 0.00 0.00 3.01
5177 6149 1.140312 TCCACCTCTGCCTTTTGAGT 58.860 50.000 0.00 0.00 0.00 3.41
5178 6150 2.157738 CTTCCACCTCTGCCTTTTGAG 58.842 52.381 0.00 0.00 0.00 3.02
5179 6151 1.819305 GCTTCCACCTCTGCCTTTTGA 60.819 52.381 0.00 0.00 0.00 2.69
5180 6152 0.600057 GCTTCCACCTCTGCCTTTTG 59.400 55.000 0.00 0.00 0.00 2.44
5181 6153 0.890996 CGCTTCCACCTCTGCCTTTT 60.891 55.000 0.00 0.00 0.00 2.27
5182 6154 1.302832 CGCTTCCACCTCTGCCTTT 60.303 57.895 0.00 0.00 0.00 3.11
5183 6155 2.348998 CGCTTCCACCTCTGCCTT 59.651 61.111 0.00 0.00 0.00 4.35
5184 6156 3.710722 CCGCTTCCACCTCTGCCT 61.711 66.667 0.00 0.00 0.00 4.75
5185 6157 2.543067 AATCCGCTTCCACCTCTGCC 62.543 60.000 0.00 0.00 0.00 4.85
5186 6158 0.178068 TAATCCGCTTCCACCTCTGC 59.822 55.000 0.00 0.00 0.00 4.26
5187 6159 1.802880 CGTAATCCGCTTCCACCTCTG 60.803 57.143 0.00 0.00 0.00 3.35
5188 6160 0.460311 CGTAATCCGCTTCCACCTCT 59.540 55.000 0.00 0.00 0.00 3.69
5189 6161 0.458669 TCGTAATCCGCTTCCACCTC 59.541 55.000 0.00 0.00 36.19 3.85
5190 6162 0.899720 TTCGTAATCCGCTTCCACCT 59.100 50.000 0.00 0.00 36.19 4.00
5191 6163 1.865340 GATTCGTAATCCGCTTCCACC 59.135 52.381 0.00 0.00 36.19 4.61
5201 6173 0.602905 CCCGGGCTGGATTCGTAATC 60.603 60.000 15.75 0.00 42.00 1.75
5202 6174 1.450211 CCCGGGCTGGATTCGTAAT 59.550 57.895 15.75 0.00 42.00 1.89
5203 6175 2.904905 CCCGGGCTGGATTCGTAA 59.095 61.111 15.75 0.00 42.00 3.18
5204 6176 3.857038 GCCCGGGCTGGATTCGTA 61.857 66.667 38.76 0.00 42.00 3.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.