Multiple sequence alignment - TraesCS3D01G509100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G509100 chr3D 100.000 3495 0 0 1 3495 594852731 594856225 0.000000e+00 6455.0
1 TraesCS3D01G509100 chr3A 91.261 1293 90 18 1 1284 725736943 725738221 0.000000e+00 1740.0
2 TraesCS3D01G509100 chr3A 86.215 428 53 5 1282 1709 725738275 725738696 3.180000e-125 459.0
3 TraesCS3D01G509100 chr3A 83.740 492 63 8 1780 2255 725738720 725739210 1.910000e-122 449.0
4 TraesCS3D01G509100 chr3A 86.585 246 28 4 2299 2539 725739219 725739464 2.070000e-67 267.0
5 TraesCS3D01G509100 chr3A 92.308 39 1 2 2619 2656 504372957 504372994 2.000000e-03 54.7
6 TraesCS3D01G509100 chr4A 98.540 685 10 0 2627 3311 59263368 59264052 0.000000e+00 1210.0
7 TraesCS3D01G509100 chr4A 98.870 177 2 0 3311 3487 59267470 59267646 2.020000e-82 316.0
8 TraesCS3D01G509100 chr6B 98.536 683 10 0 2629 3311 678800648 678801330 0.000000e+00 1206.0
9 TraesCS3D01G509100 chr6B 98.919 185 2 0 3311 3495 678804153 678804337 7.230000e-87 331.0
10 TraesCS3D01G509100 chr5A 98.538 684 9 1 2629 3311 445223160 445223843 0.000000e+00 1206.0
11 TraesCS3D01G509100 chr5A 98.246 684 11 1 2629 3311 445216240 445216923 0.000000e+00 1195.0
12 TraesCS3D01G509100 chr5A 98.246 684 11 1 2629 3311 445228629 445229312 0.000000e+00 1195.0
13 TraesCS3D01G509100 chr5A 98.243 683 11 1 2630 3311 445211933 445212615 0.000000e+00 1194.0
14 TraesCS3D01G509100 chr5A 97.953 684 13 1 2629 3311 445234098 445234781 0.000000e+00 1184.0
15 TraesCS3D01G509100 chr5A 99.457 184 1 0 3312 3495 445237533 445237716 5.590000e-88 335.0
16 TraesCS3D01G509100 chr3B 98.256 688 12 0 2624 3311 794362329 794363016 0.000000e+00 1205.0
17 TraesCS3D01G509100 chr3B 91.776 535 43 1 1417 1951 798345561 798346094 0.000000e+00 743.0
18 TraesCS3D01G509100 chr3B 92.434 489 32 4 902 1389 798345084 798345568 0.000000e+00 693.0
19 TraesCS3D01G509100 chr3B 87.812 320 33 2 1939 2255 798347839 798348155 1.530000e-98 370.0
20 TraesCS3D01G509100 chr3B 99.459 185 1 0 3311 3495 794364500 794364684 1.550000e-88 337.0
21 TraesCS3D01G509100 chr3B 94.286 35 2 0 2622 2656 783000047 783000081 2.000000e-03 54.7
22 TraesCS3D01G509100 chr2B 98.251 686 12 0 2629 3314 734394257 734393572 0.000000e+00 1201.0
23 TraesCS3D01G509100 chr2B 100.000 185 0 0 3311 3495 734390207 734390023 3.340000e-90 342.0
24 TraesCS3D01G509100 chr2B 97.838 185 4 0 3311 3495 51742039 51742223 1.570000e-83 320.0
25 TraesCS3D01G509100 chr2B 97.849 186 3 1 3311 3495 524017909 524017724 1.570000e-83 320.0
26 TraesCS3D01G509100 chr2B 90.698 43 1 1 2611 2653 516836609 516836648 2.000000e-03 54.7
27 TraesCS3D01G509100 chr2D 86.727 550 53 10 1282 1829 590668047 590667516 8.350000e-166 593.0
28 TraesCS3D01G509100 chr6A 84.545 550 65 9 1282 1829 603492252 603491721 8.590000e-146 527.0
29 TraesCS3D01G509100 chr6A 91.935 186 13 2 3311 3495 105025567 105025383 3.460000e-65 259.0
30 TraesCS3D01G509100 chr7A 92.857 238 14 2 1594 1829 505028699 505028463 3.340000e-90 342.0
31 TraesCS3D01G509100 chr7A 88.119 101 11 1 1282 1381 505271956 505271856 6.130000e-23 119.0
32 TraesCS3D01G509100 chr5B 100.000 185 0 0 3311 3495 578080908 578081092 3.340000e-90 342.0
33 TraesCS3D01G509100 chr7D 93.023 43 2 1 2620 2661 428730562 428730520 1.050000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G509100 chr3D 594852731 594856225 3494 False 6455.00 6455 100.00000 1 3495 1 chr3D.!!$F1 3494
1 TraesCS3D01G509100 chr3A 725736943 725739464 2521 False 728.75 1740 86.95025 1 2539 4 chr3A.!!$F2 2538
2 TraesCS3D01G509100 chr4A 59263368 59267646 4278 False 763.00 1210 98.70500 2627 3487 2 chr4A.!!$F1 860
3 TraesCS3D01G509100 chr6B 678800648 678804337 3689 False 768.50 1206 98.72750 2629 3495 2 chr6B.!!$F1 866
4 TraesCS3D01G509100 chr5A 445223160 445223843 683 False 1206.00 1206 98.53800 2629 3311 1 chr5A.!!$F1 682
5 TraesCS3D01G509100 chr5A 445228629 445229312 683 False 1195.00 1195 98.24600 2629 3311 1 chr5A.!!$F2 682
6 TraesCS3D01G509100 chr5A 445211933 445216923 4990 False 1194.50 1195 98.24450 2629 3311 2 chr5A.!!$F3 682
7 TraesCS3D01G509100 chr5A 445234098 445237716 3618 False 759.50 1184 98.70500 2629 3495 2 chr5A.!!$F4 866
8 TraesCS3D01G509100 chr3B 794362329 794364684 2355 False 771.00 1205 98.85750 2624 3495 2 chr3B.!!$F2 871
9 TraesCS3D01G509100 chr3B 798345084 798348155 3071 False 602.00 743 90.67400 902 2255 3 chr3B.!!$F3 1353
10 TraesCS3D01G509100 chr2B 734390023 734394257 4234 True 771.50 1201 99.12550 2629 3495 2 chr2B.!!$R2 866
11 TraesCS3D01G509100 chr2D 590667516 590668047 531 True 593.00 593 86.72700 1282 1829 1 chr2D.!!$R1 547
12 TraesCS3D01G509100 chr6A 603491721 603492252 531 True 527.00 527 84.54500 1282 1829 1 chr6A.!!$R2 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
952 960 0.106318 GCTTCCCAATCCAGCCTCAT 60.106 55.0 0.0 0.0 0.0 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2567 4440 0.034059 GTGGCCGGATAGTGATGAGG 59.966 60.0 5.05 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.885887 TGCAAAAGAGGGAATTGGTCG 59.114 47.619 0.00 0.00 0.00 4.79
41 42 5.861787 GGGAATTGGTCGAACAAATAACTTG 59.138 40.000 21.56 0.00 41.19 3.16
89 90 2.632996 CTCGCCTCCATATTACCCTTCA 59.367 50.000 0.00 0.00 0.00 3.02
128 129 9.653067 CAGTAATAGTATCTGTCGTGAGTTTAG 57.347 37.037 0.00 0.00 0.00 1.85
170 171 6.183360 GCTCTCTCTTGAAAGCTTACCTATCT 60.183 42.308 0.00 0.00 0.00 1.98
172 173 6.665680 TCTCTCTTGAAAGCTTACCTATCTGT 59.334 38.462 0.00 0.00 0.00 3.41
316 317 1.626686 CCCTCTGGTCGATATGCTCT 58.373 55.000 0.00 0.00 0.00 4.09
333 334 4.809193 TGCTCTGGTCCTACAAGATAGAT 58.191 43.478 0.00 0.00 0.00 1.98
345 346 7.230913 TCCTACAAGATAGATAAAGAACTCCCG 59.769 40.741 0.00 0.00 0.00 5.14
347 348 7.419711 ACAAGATAGATAAAGAACTCCCGAA 57.580 36.000 0.00 0.00 0.00 4.30
396 397 7.236640 TCATGGAGGCCCTAATTTAAAAAGTTT 59.763 33.333 0.00 0.00 0.00 2.66
397 398 6.764379 TGGAGGCCCTAATTTAAAAAGTTTG 58.236 36.000 0.00 0.00 0.00 2.93
525 526 6.894339 ATCAGGTCAAAATCCGTTAAAACT 57.106 33.333 0.00 0.00 0.00 2.66
536 537 8.611654 AAATCCGTTAAAACTAGAGCTACAAA 57.388 30.769 0.00 0.00 0.00 2.83
537 538 8.611654 AATCCGTTAAAACTAGAGCTACAAAA 57.388 30.769 0.00 0.00 0.00 2.44
538 539 8.611654 ATCCGTTAAAACTAGAGCTACAAAAA 57.388 30.769 0.00 0.00 0.00 1.94
559 560 4.954092 AAAATCGAATCTGAGGCTTGTC 57.046 40.909 0.00 0.00 0.00 3.18
570 571 6.109156 TCTGAGGCTTGTCTTTAACATACA 57.891 37.500 0.00 0.00 37.82 2.29
600 601 7.816513 TGTTCATTCGCAAAATCCATGATTTTA 59.183 29.630 12.89 1.08 46.37 1.52
603 604 9.381033 TCATTCGCAAAATCCATGATTTTATTT 57.619 25.926 12.89 1.80 46.37 1.40
604 605 9.640974 CATTCGCAAAATCCATGATTTTATTTC 57.359 29.630 12.89 4.63 46.37 2.17
617 618 9.834628 CATGATTTTATTTCAAGCTTGCAATTT 57.165 25.926 25.68 9.49 0.00 1.82
630 631 8.598075 CAAGCTTGCAATTTAAGGTATTTCATC 58.402 33.333 14.65 0.00 35.04 2.92
653 654 8.742188 CATCATAAAATTTTACATGCGTACACC 58.258 33.333 12.74 0.00 0.00 4.16
682 683 8.612619 GTTGTATACATGTGTATTTTCCTCAGG 58.387 37.037 9.11 0.00 41.18 3.86
684 685 8.713971 TGTATACATGTGTATTTTCCTCAGGAT 58.286 33.333 9.11 0.00 41.18 3.24
685 686 9.561069 GTATACATGTGTATTTTCCTCAGGATT 57.439 33.333 9.11 0.00 41.18 3.01
718 719 9.435688 AACTAAGCAGTTTGTCTTTTGATTTTT 57.564 25.926 0.00 0.00 42.51 1.94
790 791 4.968259 TCAAGATTTCCGAGAAACTTCCA 58.032 39.130 1.85 0.00 0.00 3.53
853 855 0.538118 TTCCCGATAAACCAGACCGG 59.462 55.000 0.00 0.00 42.50 5.28
855 857 0.756903 CCCGATAAACCAGACCGGAT 59.243 55.000 9.46 0.00 42.49 4.18
887 895 1.199097 GTTGGGCCATACTTTCACACG 59.801 52.381 7.26 0.00 0.00 4.49
892 900 1.401018 GCCATACTTTCACACGTTGGC 60.401 52.381 6.37 6.37 41.09 4.52
926 934 2.906897 CCCAAACACGCTGTGGCT 60.907 61.111 12.18 0.00 37.94 4.75
937 945 1.088910 GCTGTGGCTCTAGCTGCTTC 61.089 60.000 7.79 0.00 41.70 3.86
952 960 0.106318 GCTTCCCAATCCAGCCTCAT 60.106 55.000 0.00 0.00 0.00 2.90
1003 1012 2.343758 GGTGCAGCTCTCGTGGAA 59.656 61.111 9.07 0.00 0.00 3.53
1004 1013 2.029844 GGTGCAGCTCTCGTGGAAC 61.030 63.158 9.07 0.00 0.00 3.62
1023 1033 3.390175 ACTTTCCCAGCTAGCTAGAGA 57.610 47.619 25.15 11.55 0.00 3.10
1025 1035 3.295973 CTTTCCCAGCTAGCTAGAGACT 58.704 50.000 25.15 9.19 0.00 3.24
1026 1036 4.079672 ACTTTCCCAGCTAGCTAGAGACTA 60.080 45.833 25.15 3.28 0.00 2.59
1027 1037 3.780804 TCCCAGCTAGCTAGAGACTAG 57.219 52.381 25.15 5.23 40.13 2.57
1123 1133 0.745845 GCCACGTCAGCAAGATGGAT 60.746 55.000 2.25 0.00 37.58 3.41
1141 1151 4.521062 GCCGTCATCGAGCAGGCT 62.521 66.667 14.26 0.00 44.06 4.58
1258 1268 2.548904 CCGTCTACTCCAGTAAGATCGG 59.451 54.545 0.00 0.00 0.00 4.18
1335 1401 3.817647 GTGCAGTGAAGAAAGGACAGATT 59.182 43.478 0.00 0.00 0.00 2.40
1338 1404 4.276926 GCAGTGAAGAAAGGACAGATTGTT 59.723 41.667 0.00 0.00 0.00 2.83
1387 1482 4.633126 ACAGCATCAATGTGAGTGTGTATC 59.367 41.667 0.00 0.00 0.00 2.24
1390 1485 4.803613 GCATCAATGTGAGTGTGTATCGTA 59.196 41.667 0.00 0.00 0.00 3.43
1391 1486 5.463392 GCATCAATGTGAGTGTGTATCGTAT 59.537 40.000 0.00 0.00 0.00 3.06
1392 1487 6.018751 GCATCAATGTGAGTGTGTATCGTATT 60.019 38.462 0.00 0.00 0.00 1.89
1393 1488 7.558991 CATCAATGTGAGTGTGTATCGTATTC 58.441 38.462 0.00 0.00 0.00 1.75
1394 1489 5.741982 TCAATGTGAGTGTGTATCGTATTCG 59.258 40.000 0.00 0.00 38.55 3.34
1395 1490 4.023739 TGTGAGTGTGTATCGTATTCGG 57.976 45.455 0.00 0.00 37.69 4.30
1479 1574 7.924940 TGTTTGTGATAAAATTTGCCCTTTTC 58.075 30.769 0.00 0.00 0.00 2.29
1492 1587 2.597455 CCCTTTTCCTTTGAGCTGGAA 58.403 47.619 0.00 0.00 40.21 3.53
1495 1590 3.828451 CCTTTTCCTTTGAGCTGGAATGA 59.172 43.478 4.22 0.00 41.36 2.57
1497 1592 4.371624 TTTCCTTTGAGCTGGAATGAGA 57.628 40.909 4.22 0.00 41.36 3.27
1503 1598 0.247736 GAGCTGGAATGAGACACGGT 59.752 55.000 0.00 0.00 0.00 4.83
1600 1695 1.019805 GCTGGCCTTTAGTGACCGTC 61.020 60.000 3.32 0.00 0.00 4.79
1682 1777 1.027357 ACATATACGAAGACCGCGGT 58.973 50.000 34.89 34.89 43.32 5.68
1692 1787 0.108329 AGACCGCGGTGAGGTAATTG 60.108 55.000 39.65 1.41 43.01 2.32
1714 1809 2.948979 ACTTCACTGATCCTAGCTCTCG 59.051 50.000 0.00 0.00 0.00 4.04
1756 1853 9.872721 ATATGTTATCTATGTTGCTCTCATCAG 57.127 33.333 0.00 0.00 0.00 2.90
1791 1888 8.798153 CATCACTTGTTCAAGTTTCAGTTTAAC 58.202 33.333 14.43 0.00 0.00 2.01
1877 1974 7.303182 TGCTCTGGTAATTATACATAGCTGT 57.697 36.000 20.64 0.00 39.49 4.40
1903 2004 6.433847 TGATCCTTTCTTCTAGTTCACCAA 57.566 37.500 0.00 0.00 0.00 3.67
1909 2010 8.826765 TCCTTTCTTCTAGTTCACCAATCTTAT 58.173 33.333 0.00 0.00 0.00 1.73
1977 3835 6.485830 TGTCTCGATAAATTTCCTCCTGAT 57.514 37.500 0.00 0.00 0.00 2.90
2014 3875 1.007618 GTAGATCGCGTGGGTAGGC 60.008 63.158 5.77 0.00 0.00 3.93
2065 3926 7.879677 CCAACTTATATGCTCATCAAGGTATGA 59.120 37.037 8.22 0.00 43.67 2.15
2066 3927 8.715998 CAACTTATATGCTCATCAAGGTATGAC 58.284 37.037 8.22 0.00 41.93 3.06
2116 3981 4.099419 ACTTTCTGGTCACCCATTGTTTTC 59.901 41.667 0.00 0.00 40.90 2.29
2117 3982 2.593026 TCTGGTCACCCATTGTTTTCC 58.407 47.619 0.00 0.00 40.90 3.13
2229 4098 3.992260 TCTTGCGAAGAGGCTCTATAC 57.008 47.619 19.07 10.35 32.71 1.47
2240 4109 4.130857 GAGGCTCTATACTTTCTTTGGGC 58.869 47.826 7.40 0.00 0.00 5.36
2245 4114 6.773200 GGCTCTATACTTTCTTTGGGCTTATT 59.227 38.462 0.00 0.00 0.00 1.40
2259 4128 8.940768 TTTGGGCTTATTTTTATGATTACAGC 57.059 30.769 0.00 0.00 0.00 4.40
2260 4129 7.896383 TGGGCTTATTTTTATGATTACAGCT 57.104 32.000 0.00 0.00 0.00 4.24
2261 4130 7.940850 TGGGCTTATTTTTATGATTACAGCTC 58.059 34.615 0.00 0.00 0.00 4.09
2262 4131 7.559533 TGGGCTTATTTTTATGATTACAGCTCA 59.440 33.333 0.00 0.00 0.00 4.26
2263 4132 7.862873 GGGCTTATTTTTATGATTACAGCTCAC 59.137 37.037 0.00 0.00 0.00 3.51
2264 4133 7.862873 GGCTTATTTTTATGATTACAGCTCACC 59.137 37.037 0.00 0.00 0.00 4.02
2265 4134 7.862873 GCTTATTTTTATGATTACAGCTCACCC 59.137 37.037 0.00 0.00 0.00 4.61
2266 4135 5.811399 TTTTTATGATTACAGCTCACCCG 57.189 39.130 0.00 0.00 0.00 5.28
2268 4137 0.541392 ATGATTACAGCTCACCCGCA 59.459 50.000 0.00 0.00 0.00 5.69
2269 4138 0.323302 TGATTACAGCTCACCCGCAA 59.677 50.000 0.00 0.00 0.00 4.85
2271 4140 1.810151 GATTACAGCTCACCCGCAAAA 59.190 47.619 0.00 0.00 0.00 2.44
2272 4141 0.948678 TTACAGCTCACCCGCAAAAC 59.051 50.000 0.00 0.00 0.00 2.43
2273 4142 0.179043 TACAGCTCACCCGCAAAACA 60.179 50.000 0.00 0.00 0.00 2.83
2274 4143 1.034838 ACAGCTCACCCGCAAAACAA 61.035 50.000 0.00 0.00 0.00 2.83
2275 4144 0.102120 CAGCTCACCCGCAAAACAAA 59.898 50.000 0.00 0.00 0.00 2.83
2276 4145 1.039856 AGCTCACCCGCAAAACAAAT 58.960 45.000 0.00 0.00 0.00 2.32
2277 4146 1.139163 GCTCACCCGCAAAACAAATG 58.861 50.000 0.00 0.00 0.00 2.32
2278 4147 1.537990 GCTCACCCGCAAAACAAATGT 60.538 47.619 0.00 0.00 0.00 2.71
2279 4148 2.820330 CTCACCCGCAAAACAAATGTT 58.180 42.857 0.00 0.00 40.50 2.71
2281 4150 4.363999 CTCACCCGCAAAACAAATGTTTA 58.636 39.130 11.60 0.00 46.47 2.01
2282 4151 4.950050 TCACCCGCAAAACAAATGTTTAT 58.050 34.783 11.60 1.02 46.47 1.40
2283 4152 4.747108 TCACCCGCAAAACAAATGTTTATG 59.253 37.500 11.60 12.24 46.47 1.90
2284 4153 4.747108 CACCCGCAAAACAAATGTTTATGA 59.253 37.500 11.60 0.00 46.47 2.15
2285 4154 5.407995 CACCCGCAAAACAAATGTTTATGAT 59.592 36.000 11.60 0.00 46.47 2.45
2286 4155 5.994668 ACCCGCAAAACAAATGTTTATGATT 59.005 32.000 11.60 0.00 46.47 2.57
2287 4156 7.116948 CACCCGCAAAACAAATGTTTATGATTA 59.883 33.333 11.60 0.00 46.47 1.75
2288 4157 7.330700 ACCCGCAAAACAAATGTTTATGATTAG 59.669 33.333 11.60 2.15 46.47 1.73
2289 4158 7.543868 CCCGCAAAACAAATGTTTATGATTAGA 59.456 33.333 11.60 0.00 46.47 2.10
2290 4159 8.586273 CCGCAAAACAAATGTTTATGATTAGAG 58.414 33.333 11.60 0.41 46.47 2.43
2291 4160 9.128107 CGCAAAACAAATGTTTATGATTAGAGT 57.872 29.630 11.60 0.00 46.47 3.24
2341 4210 6.811253 ACTTGACTACGAGAGGATATGATC 57.189 41.667 0.00 0.00 0.00 2.92
2342 4211 6.299922 ACTTGACTACGAGAGGATATGATCA 58.700 40.000 0.00 0.00 0.00 2.92
2343 4212 6.205853 ACTTGACTACGAGAGGATATGATCAC 59.794 42.308 0.00 0.00 0.00 3.06
2378 4247 1.363744 GAGGGAGCACAATGTTCTCG 58.636 55.000 6.93 0.00 32.96 4.04
2380 4249 1.648467 GGGAGCACAATGTTCTCGGC 61.648 60.000 6.93 0.00 27.06 5.54
2388 4257 4.274069 CACAATGTTCTCGGCATAAATCG 58.726 43.478 0.00 0.00 0.00 3.34
2395 4264 3.792401 TCTCGGCATAAATCGATGTTGT 58.208 40.909 0.00 0.00 34.77 3.32
2397 4266 4.033932 TCTCGGCATAAATCGATGTTGTTG 59.966 41.667 0.00 0.00 34.77 3.33
2404 4273 0.516877 ATCGATGTTGTTGTGTGGCG 59.483 50.000 0.00 0.00 0.00 5.69
2416 4285 0.660488 GTGTGGCGATGTTGTGACAA 59.340 50.000 0.00 0.00 39.66 3.18
2443 4312 3.429085 CATGGATGCAAAACGAAGTAGC 58.571 45.455 0.00 0.00 45.00 3.58
2451 4320 5.685841 TGCAAAACGAAGTAGCTGTAAATC 58.314 37.500 0.00 0.00 45.00 2.17
2524 4397 7.469537 TTTCACCTTTTCAACTTTTGAGGTA 57.530 32.000 0.00 0.00 41.38 3.08
2539 4412 8.308931 ACTTTTGAGGTAGTTGATAATCGTACA 58.691 33.333 0.00 0.00 0.00 2.90
2540 4413 8.470040 TTTTGAGGTAGTTGATAATCGTACAC 57.530 34.615 0.00 0.00 0.00 2.90
2541 4414 7.400599 TTGAGGTAGTTGATAATCGTACACT 57.599 36.000 0.00 0.00 0.00 3.55
2542 4415 8.510243 TTGAGGTAGTTGATAATCGTACACTA 57.490 34.615 0.00 0.00 0.00 2.74
2543 4416 8.687292 TGAGGTAGTTGATAATCGTACACTAT 57.313 34.615 0.00 0.00 0.00 2.12
2544 4417 9.128404 TGAGGTAGTTGATAATCGTACACTATT 57.872 33.333 0.00 0.00 0.00 1.73
2568 4441 4.086706 AGATCGAAATACCATTGACCCC 57.913 45.455 0.00 0.00 0.00 4.95
2569 4442 3.716872 AGATCGAAATACCATTGACCCCT 59.283 43.478 0.00 0.00 0.00 4.79
2570 4443 3.553828 TCGAAATACCATTGACCCCTC 57.446 47.619 0.00 0.00 0.00 4.30
2571 4444 2.841266 TCGAAATACCATTGACCCCTCA 59.159 45.455 0.00 0.00 0.00 3.86
2572 4445 3.458118 TCGAAATACCATTGACCCCTCAT 59.542 43.478 0.00 0.00 0.00 2.90
2573 4446 3.815401 CGAAATACCATTGACCCCTCATC 59.185 47.826 0.00 0.00 0.00 2.92
2574 4447 4.685848 CGAAATACCATTGACCCCTCATCA 60.686 45.833 0.00 0.00 0.00 3.07
2575 4448 3.864789 ATACCATTGACCCCTCATCAC 57.135 47.619 0.00 0.00 0.00 3.06
2576 4449 1.673767 ACCATTGACCCCTCATCACT 58.326 50.000 0.00 0.00 0.00 3.41
2577 4450 2.845659 ACCATTGACCCCTCATCACTA 58.154 47.619 0.00 0.00 0.00 2.74
2578 4451 3.397527 ACCATTGACCCCTCATCACTAT 58.602 45.455 0.00 0.00 0.00 2.12
2579 4452 3.392616 ACCATTGACCCCTCATCACTATC 59.607 47.826 0.00 0.00 0.00 2.08
2580 4453 3.244700 CCATTGACCCCTCATCACTATCC 60.245 52.174 0.00 0.00 0.00 2.59
2581 4454 1.704641 TGACCCCTCATCACTATCCG 58.295 55.000 0.00 0.00 0.00 4.18
2582 4455 0.969894 GACCCCTCATCACTATCCGG 59.030 60.000 0.00 0.00 0.00 5.14
2583 4456 1.122019 ACCCCTCATCACTATCCGGC 61.122 60.000 0.00 0.00 0.00 6.13
2584 4457 1.674057 CCCTCATCACTATCCGGCC 59.326 63.158 0.00 0.00 0.00 6.13
2585 4458 1.121407 CCCTCATCACTATCCGGCCA 61.121 60.000 2.24 0.00 0.00 5.36
2586 4459 0.034059 CCTCATCACTATCCGGCCAC 59.966 60.000 2.24 0.00 0.00 5.01
2587 4460 1.043816 CTCATCACTATCCGGCCACT 58.956 55.000 2.24 0.00 0.00 4.00
2588 4461 0.752658 TCATCACTATCCGGCCACTG 59.247 55.000 2.24 0.00 0.00 3.66
2589 4462 0.752658 CATCACTATCCGGCCACTGA 59.247 55.000 2.24 0.00 0.00 3.41
2590 4463 0.753262 ATCACTATCCGGCCACTGAC 59.247 55.000 2.24 0.00 0.00 3.51
2591 4464 1.144057 CACTATCCGGCCACTGACC 59.856 63.158 2.24 0.00 0.00 4.02
2592 4465 1.305802 ACTATCCGGCCACTGACCA 60.306 57.895 2.24 0.00 0.00 4.02
2593 4466 0.691078 ACTATCCGGCCACTGACCAT 60.691 55.000 2.24 0.00 0.00 3.55
2594 4467 0.250038 CTATCCGGCCACTGACCATG 60.250 60.000 2.24 0.00 0.00 3.66
2595 4468 2.324014 TATCCGGCCACTGACCATGC 62.324 60.000 2.24 0.00 0.00 4.06
2596 4469 4.720902 CCGGCCACTGACCATGCA 62.721 66.667 2.24 0.00 0.00 3.96
2597 4470 2.438975 CGGCCACTGACCATGCAT 60.439 61.111 2.24 0.00 0.00 3.96
2598 4471 2.475466 CGGCCACTGACCATGCATC 61.475 63.158 2.24 0.00 0.00 3.91
2599 4472 1.378911 GGCCACTGACCATGCATCA 60.379 57.895 0.00 0.00 0.00 3.07
2608 4481 5.358298 CTGACCATGCATCAGTGATAATG 57.642 43.478 5.03 12.21 39.04 1.90
2609 4482 4.139038 TGACCATGCATCAGTGATAATGG 58.861 43.478 29.11 29.11 39.42 3.16
2610 4483 4.139786 GACCATGCATCAGTGATAATGGT 58.860 43.478 33.01 33.01 44.34 3.55
2611 4484 4.139786 ACCATGCATCAGTGATAATGGTC 58.860 43.478 30.01 10.38 41.08 4.02
2612 4485 4.141321 ACCATGCATCAGTGATAATGGTCT 60.141 41.667 30.01 18.21 41.08 3.85
2613 4486 4.454847 CCATGCATCAGTGATAATGGTCTC 59.545 45.833 25.65 5.44 33.95 3.36
2614 4487 4.758773 TGCATCAGTGATAATGGTCTCA 57.241 40.909 5.03 0.00 0.00 3.27
2615 4488 4.445453 TGCATCAGTGATAATGGTCTCAC 58.555 43.478 5.03 0.00 41.65 3.51
2616 4489 3.812053 GCATCAGTGATAATGGTCTCACC 59.188 47.826 5.03 0.00 42.18 4.02
2617 4490 3.801114 TCAGTGATAATGGTCTCACCG 57.199 47.619 0.00 0.00 42.58 4.94
2618 4491 3.361786 TCAGTGATAATGGTCTCACCGA 58.638 45.455 0.00 0.00 42.58 4.69
2619 4492 3.130516 TCAGTGATAATGGTCTCACCGAC 59.869 47.826 0.00 0.00 42.58 4.79
2838 4711 2.039818 TGAGCGGACTAGTACTCCTG 57.960 55.000 14.30 0.00 0.00 3.86
3248 9430 2.124570 GGCGTCCAGGACATGCAT 60.125 61.111 20.13 0.00 32.09 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.502123 TGTTCGACCAATTCCCTCTTT 57.498 42.857 0.00 0.00 0.00 2.52
43 44 2.046988 CAGTGGTGCTCGATGGCA 60.047 61.111 0.00 0.00 40.15 4.92
116 117 4.905269 AGCACAAAAACTAAACTCACGAC 58.095 39.130 0.00 0.00 0.00 4.34
118 119 5.156804 AGAGCACAAAAACTAAACTCACG 57.843 39.130 0.00 0.00 0.00 4.35
154 155 7.394016 TGATGAAACAGATAGGTAAGCTTTCA 58.606 34.615 3.20 0.00 32.36 2.69
189 190 8.881743 CAGATCTATGAAAGAAAAGAACTCTGG 58.118 37.037 0.00 0.00 37.89 3.86
229 230 9.702726 CTCTCGGTATAACACAACAATAAAATG 57.297 33.333 0.00 0.00 0.00 2.32
235 236 7.822334 TGAAATCTCTCGGTATAACACAACAAT 59.178 33.333 0.00 0.00 0.00 2.71
236 237 7.156000 TGAAATCTCTCGGTATAACACAACAA 58.844 34.615 0.00 0.00 0.00 2.83
237 238 6.693466 TGAAATCTCTCGGTATAACACAACA 58.307 36.000 0.00 0.00 0.00 3.33
238 239 7.591006 TTGAAATCTCTCGGTATAACACAAC 57.409 36.000 0.00 0.00 0.00 3.32
316 317 8.840200 AGTTCTTTATCTATCTTGTAGGACCA 57.160 34.615 0.00 0.00 0.00 4.02
333 334 3.757270 TGGCATTTTCGGGAGTTCTTTA 58.243 40.909 0.00 0.00 0.00 1.85
345 346 4.496507 GCTCGGTCTCTATTTGGCATTTTC 60.497 45.833 0.00 0.00 0.00 2.29
347 348 2.945668 GCTCGGTCTCTATTTGGCATTT 59.054 45.455 0.00 0.00 0.00 2.32
537 538 5.006386 AGACAAGCCTCAGATTCGATTTTT 58.994 37.500 0.00 0.00 0.00 1.94
538 539 4.583871 AGACAAGCCTCAGATTCGATTTT 58.416 39.130 0.00 0.00 0.00 1.82
539 540 4.213564 AGACAAGCCTCAGATTCGATTT 57.786 40.909 0.00 0.00 0.00 2.17
540 541 3.902881 AGACAAGCCTCAGATTCGATT 57.097 42.857 0.00 0.00 0.00 3.34
541 542 3.902881 AAGACAAGCCTCAGATTCGAT 57.097 42.857 0.00 0.00 0.00 3.59
543 544 4.690748 TGTTAAAGACAAGCCTCAGATTCG 59.309 41.667 0.00 0.00 34.69 3.34
570 571 7.490840 TCATGGATTTTGCGAATGAACATTAT 58.509 30.769 0.00 0.00 0.00 1.28
588 589 7.332557 TGCAAGCTTGAAATAAAATCATGGAT 58.667 30.769 30.39 0.00 0.00 3.41
600 601 9.506018 AAATACCTTAAATTGCAAGCTTGAAAT 57.494 25.926 30.39 27.34 38.05 2.17
603 604 7.665690 TGAAATACCTTAAATTGCAAGCTTGA 58.334 30.769 30.39 10.67 0.00 3.02
604 605 7.887996 TGAAATACCTTAAATTGCAAGCTTG 57.112 32.000 22.44 22.44 0.00 4.01
630 631 8.582930 CAAGGTGTACGCATGTAAAATTTTATG 58.417 33.333 13.54 10.84 30.94 1.90
645 646 4.628333 ACATGTATACAACAAGGTGTACGC 59.372 41.667 10.14 0.00 42.70 4.42
653 654 9.988350 GAGGAAAATACACATGTATACAACAAG 57.012 33.333 10.14 3.29 42.70 3.16
853 855 1.395954 GCCCAACTACGTTCGGAAATC 59.604 52.381 0.00 0.00 0.00 2.17
855 857 0.603439 GGCCCAACTACGTTCGGAAA 60.603 55.000 0.00 0.00 0.00 3.13
867 869 1.199097 CGTGTGAAAGTATGGCCCAAC 59.801 52.381 0.00 0.00 0.00 3.77
868 870 1.202830 ACGTGTGAAAGTATGGCCCAA 60.203 47.619 0.00 0.00 0.00 4.12
887 895 1.268032 CCAGAAATATGCGTCGCCAAC 60.268 52.381 15.88 0.56 0.00 3.77
892 900 1.507141 GGGCCCAGAAATATGCGTCG 61.507 60.000 19.95 0.00 0.00 5.12
899 907 1.540267 CGTGTTTGGGCCCAGAAATA 58.460 50.000 26.87 13.36 0.00 1.40
926 934 1.487976 CTGGATTGGGAAGCAGCTAGA 59.512 52.381 0.00 0.00 0.00 2.43
937 945 0.841961 TGAGATGAGGCTGGATTGGG 59.158 55.000 0.00 0.00 0.00 4.12
1003 1012 3.028130 GTCTCTAGCTAGCTGGGAAAGT 58.972 50.000 27.68 0.22 0.00 2.66
1004 1013 3.295973 AGTCTCTAGCTAGCTGGGAAAG 58.704 50.000 27.68 16.99 0.00 2.62
1101 1111 1.672356 ATCTTGCTGACGTGGCCAC 60.672 57.895 26.78 26.78 0.00 5.01
1123 1133 4.819761 GCCTGCTCGATGACGGCA 62.820 66.667 0.00 0.00 40.90 5.69
1258 1268 5.199424 ACAATGTACGTATTTCGAAGCAC 57.801 39.130 0.00 0.00 42.86 4.40
1335 1401 0.589708 TCTCTTTCTCGACGCGAACA 59.410 50.000 15.93 0.00 34.74 3.18
1338 1404 0.873054 ACTTCTCTTTCTCGACGCGA 59.127 50.000 15.93 2.20 0.00 5.87
1390 1485 1.268625 TGTAGCGCGTATGATCCGAAT 59.731 47.619 8.43 0.00 0.00 3.34
1391 1486 0.664224 TGTAGCGCGTATGATCCGAA 59.336 50.000 8.43 0.00 0.00 4.30
1392 1487 0.040692 GTGTAGCGCGTATGATCCGA 60.041 55.000 8.43 0.00 0.00 4.55
1393 1488 1.002250 GGTGTAGCGCGTATGATCCG 61.002 60.000 8.43 0.00 0.00 4.18
1394 1489 1.002250 CGGTGTAGCGCGTATGATCC 61.002 60.000 8.43 3.16 0.00 3.36
1395 1490 0.317603 ACGGTGTAGCGCGTATGATC 60.318 55.000 8.43 0.00 0.00 2.92
1418 1513 3.378112 TGAAATTTCGAGTGCATCCATCC 59.622 43.478 13.34 0.00 0.00 3.51
1419 1514 4.621068 TGAAATTTCGAGTGCATCCATC 57.379 40.909 13.34 0.00 0.00 3.51
1479 1574 2.746362 GTGTCTCATTCCAGCTCAAAGG 59.254 50.000 0.00 0.00 0.00 3.11
1492 1587 6.460781 TGTTACAGAAATAACCGTGTCTCAT 58.539 36.000 0.00 0.00 34.67 2.90
1495 1590 6.092955 TCTGTTACAGAAATAACCGTGTCT 57.907 37.500 13.16 0.00 37.57 3.41
1558 1653 6.018669 AGCAAATTAAGTTACTCATCGCTAGC 60.019 38.462 4.06 4.06 0.00 3.42
1600 1695 7.272037 AGGTACTGAAATTAACAAACCACAG 57.728 36.000 13.84 0.00 37.18 3.66
1682 1777 5.485353 AGGATCAGTGAAGTCAATTACCTCA 59.515 40.000 0.00 0.00 0.00 3.86
1692 1787 3.003275 CGAGAGCTAGGATCAGTGAAGTC 59.997 52.174 0.00 0.00 0.00 3.01
1714 1809 3.633235 ACATATTGACGAGAGCGACATC 58.367 45.455 0.00 0.00 41.37 3.06
1791 1888 5.808540 CCTGCACTTGATAATTTGGTGATTG 59.191 40.000 0.00 0.00 0.00 2.67
1877 1974 7.287061 TGGTGAACTAGAAGAAAGGATCAAAA 58.713 34.615 0.00 0.00 0.00 2.44
1909 2010 7.944554 AGATCCATCTAAAGTTGAGGAACAAAA 59.055 33.333 0.00 0.00 36.40 2.44
1944 2045 9.003658 GGAAATTTATCGAGACATGTATGGATT 57.996 33.333 20.76 5.76 0.00 3.01
1977 3835 9.406828 CGATCTACATAAGATTCCGTAATTCAA 57.593 33.333 0.00 0.00 45.35 2.69
2014 3875 4.114997 GCCGGCGGTGTTGGAATG 62.115 66.667 28.82 0.00 0.00 2.67
2193 4058 3.557595 CGCAAGAGAGGTATTCACCATTC 59.442 47.826 0.00 0.00 44.77 2.67
2214 4083 5.751028 CCAAAGAAAGTATAGAGCCTCTTCG 59.249 44.000 0.00 0.00 0.00 3.79
2240 4109 8.070171 CGGGTGAGCTGTAATCATAAAAATAAG 58.930 37.037 0.00 0.00 0.00 1.73
2245 4114 3.625764 GCGGGTGAGCTGTAATCATAAAA 59.374 43.478 0.00 0.00 0.00 1.52
2255 4124 1.034838 TTGTTTTGCGGGTGAGCTGT 61.035 50.000 0.00 0.00 38.13 4.40
2256 4125 0.102120 TTTGTTTTGCGGGTGAGCTG 59.898 50.000 0.00 0.00 38.13 4.24
2259 4128 2.507339 ACATTTGTTTTGCGGGTGAG 57.493 45.000 0.00 0.00 0.00 3.51
2260 4129 2.969628 AACATTTGTTTTGCGGGTGA 57.030 40.000 0.00 0.00 33.93 4.02
2261 4130 4.747108 TCATAAACATTTGTTTTGCGGGTG 59.253 37.500 13.40 5.09 45.07 4.61
2262 4131 4.950050 TCATAAACATTTGTTTTGCGGGT 58.050 34.783 13.40 0.00 45.07 5.28
2263 4132 6.479095 AATCATAAACATTTGTTTTGCGGG 57.521 33.333 13.40 1.40 45.07 6.13
2264 4133 8.459521 TCTAATCATAAACATTTGTTTTGCGG 57.540 30.769 13.40 2.88 45.07 5.69
2265 4134 9.128107 ACTCTAATCATAAACATTTGTTTTGCG 57.872 29.630 13.40 4.05 45.07 4.85
2296 4165 5.047377 AGTTTGTCTGACTGCAAAGGAAAAA 60.047 36.000 9.51 0.00 35.58 1.94
2297 4166 4.462483 AGTTTGTCTGACTGCAAAGGAAAA 59.538 37.500 9.51 0.00 35.58 2.29
2298 4167 4.016444 AGTTTGTCTGACTGCAAAGGAAA 58.984 39.130 9.51 0.00 35.58 3.13
2299 4168 3.620488 AGTTTGTCTGACTGCAAAGGAA 58.380 40.909 9.51 0.00 35.58 3.36
2300 4169 3.281727 AGTTTGTCTGACTGCAAAGGA 57.718 42.857 9.51 0.00 35.58 3.36
2301 4170 3.378112 TCAAGTTTGTCTGACTGCAAAGG 59.622 43.478 9.51 0.00 35.58 3.11
2302 4171 4.095483 AGTCAAGTTTGTCTGACTGCAAAG 59.905 41.667 9.51 0.00 39.79 2.77
2303 4172 4.009675 AGTCAAGTTTGTCTGACTGCAAA 58.990 39.130 9.51 0.00 39.79 3.68
2304 4173 3.609853 AGTCAAGTTTGTCTGACTGCAA 58.390 40.909 9.51 0.00 39.79 4.08
2341 4210 2.743752 CGCAACCGCTCATCCAGTG 61.744 63.158 0.00 0.00 35.30 3.66
2342 4211 2.434884 CGCAACCGCTCATCCAGT 60.435 61.111 0.00 0.00 35.30 4.00
2343 4212 2.125552 TCGCAACCGCTCATCCAG 60.126 61.111 0.00 0.00 35.30 3.86
2353 4222 1.675641 ATTGTGCTCCCTCGCAACC 60.676 57.895 0.00 0.00 42.32 3.77
2359 4228 1.363744 CGAGAACATTGTGCTCCCTC 58.636 55.000 17.50 6.35 34.87 4.30
2366 4235 4.033932 TCGATTTATGCCGAGAACATTGTG 59.966 41.667 0.00 0.00 0.00 3.33
2369 4238 4.816385 ACATCGATTTATGCCGAGAACATT 59.184 37.500 0.00 0.00 38.25 2.71
2378 4247 4.558470 CACACAACAACATCGATTTATGCC 59.442 41.667 0.00 0.00 0.00 4.40
2380 4249 4.558470 GCCACACAACAACATCGATTTATG 59.442 41.667 0.00 0.00 0.00 1.90
2388 4257 1.266718 ACATCGCCACACAACAACATC 59.733 47.619 0.00 0.00 0.00 3.06
2395 4264 0.660488 GTCACAACATCGCCACACAA 59.340 50.000 0.00 0.00 0.00 3.33
2397 4266 0.660488 TTGTCACAACATCGCCACAC 59.340 50.000 0.00 0.00 34.73 3.82
2404 4273 3.428452 CCATGGAGCATTGTCACAACATC 60.428 47.826 5.56 0.00 34.73 3.06
2416 4285 1.135527 CGTTTTGCATCCATGGAGCAT 59.864 47.619 28.21 9.68 38.19 3.79
2440 4309 8.869897 CACTATTGTTTCTTCGATTTACAGCTA 58.130 33.333 0.00 0.00 0.00 3.32
2502 4375 6.184789 ACTACCTCAAAAGTTGAAAAGGTGA 58.815 36.000 9.49 0.00 39.58 4.02
2515 4388 8.308931 AGTGTACGATTATCAACTACCTCAAAA 58.691 33.333 0.00 0.00 0.00 2.44
2542 4415 8.047310 GGGGTCAATGGTATTTCGATCTATAAT 58.953 37.037 0.00 0.00 0.00 1.28
2543 4416 7.236847 AGGGGTCAATGGTATTTCGATCTATAA 59.763 37.037 0.00 0.00 0.00 0.98
2544 4417 6.729100 AGGGGTCAATGGTATTTCGATCTATA 59.271 38.462 0.00 0.00 0.00 1.31
2545 4418 5.548056 AGGGGTCAATGGTATTTCGATCTAT 59.452 40.000 0.00 0.00 0.00 1.98
2546 4419 4.905456 AGGGGTCAATGGTATTTCGATCTA 59.095 41.667 0.00 0.00 0.00 1.98
2547 4420 3.716872 AGGGGTCAATGGTATTTCGATCT 59.283 43.478 0.00 0.00 0.00 2.75
2548 4421 4.065789 GAGGGGTCAATGGTATTTCGATC 58.934 47.826 0.00 0.00 0.00 3.69
2549 4422 3.458118 TGAGGGGTCAATGGTATTTCGAT 59.542 43.478 0.00 0.00 0.00 3.59
2550 4423 2.841266 TGAGGGGTCAATGGTATTTCGA 59.159 45.455 0.00 0.00 0.00 3.71
2551 4424 3.275617 TGAGGGGTCAATGGTATTTCG 57.724 47.619 0.00 0.00 0.00 3.46
2552 4425 4.580580 GTGATGAGGGGTCAATGGTATTTC 59.419 45.833 0.00 0.00 0.00 2.17
2553 4426 4.230502 AGTGATGAGGGGTCAATGGTATTT 59.769 41.667 0.00 0.00 0.00 1.40
2554 4427 3.788142 AGTGATGAGGGGTCAATGGTATT 59.212 43.478 0.00 0.00 0.00 1.89
2555 4428 3.397527 AGTGATGAGGGGTCAATGGTAT 58.602 45.455 0.00 0.00 0.00 2.73
2556 4429 2.845659 AGTGATGAGGGGTCAATGGTA 58.154 47.619 0.00 0.00 0.00 3.25
2557 4430 1.673767 AGTGATGAGGGGTCAATGGT 58.326 50.000 0.00 0.00 0.00 3.55
2558 4431 3.244700 GGATAGTGATGAGGGGTCAATGG 60.245 52.174 0.00 0.00 0.00 3.16
2559 4432 3.555795 CGGATAGTGATGAGGGGTCAATG 60.556 52.174 0.00 0.00 0.00 2.82
2560 4433 2.634940 CGGATAGTGATGAGGGGTCAAT 59.365 50.000 0.00 0.00 0.00 2.57
2561 4434 2.039418 CGGATAGTGATGAGGGGTCAA 58.961 52.381 0.00 0.00 0.00 3.18
2562 4435 1.704641 CGGATAGTGATGAGGGGTCA 58.295 55.000 0.00 0.00 0.00 4.02
2563 4436 0.969894 CCGGATAGTGATGAGGGGTC 59.030 60.000 0.00 0.00 0.00 4.46
2564 4437 1.122019 GCCGGATAGTGATGAGGGGT 61.122 60.000 5.05 0.00 0.00 4.95
2565 4438 1.674057 GCCGGATAGTGATGAGGGG 59.326 63.158 5.05 0.00 0.00 4.79
2566 4439 1.121407 TGGCCGGATAGTGATGAGGG 61.121 60.000 5.05 0.00 0.00 4.30
2567 4440 0.034059 GTGGCCGGATAGTGATGAGG 59.966 60.000 5.05 0.00 0.00 3.86
2568 4441 1.043816 AGTGGCCGGATAGTGATGAG 58.956 55.000 5.05 0.00 0.00 2.90
2569 4442 0.752658 CAGTGGCCGGATAGTGATGA 59.247 55.000 5.05 0.00 0.00 2.92
2570 4443 0.752658 TCAGTGGCCGGATAGTGATG 59.247 55.000 5.05 0.00 0.00 3.07
2571 4444 0.753262 GTCAGTGGCCGGATAGTGAT 59.247 55.000 5.05 0.00 0.00 3.06
2572 4445 1.327690 GGTCAGTGGCCGGATAGTGA 61.328 60.000 5.05 8.86 0.00 3.41
2573 4446 1.144057 GGTCAGTGGCCGGATAGTG 59.856 63.158 5.05 6.22 0.00 2.74
2574 4447 0.691078 ATGGTCAGTGGCCGGATAGT 60.691 55.000 5.05 0.00 0.00 2.12
2575 4448 0.250038 CATGGTCAGTGGCCGGATAG 60.250 60.000 5.05 0.00 0.00 2.08
2576 4449 1.829456 CATGGTCAGTGGCCGGATA 59.171 57.895 5.05 0.00 0.00 2.59
2577 4450 2.591753 CATGGTCAGTGGCCGGAT 59.408 61.111 5.05 0.00 0.00 4.18
2578 4451 4.408821 GCATGGTCAGTGGCCGGA 62.409 66.667 5.05 0.00 0.00 5.14
2579 4452 4.720902 TGCATGGTCAGTGGCCGG 62.721 66.667 9.72 5.00 0.00 6.13
2580 4453 2.438975 ATGCATGGTCAGTGGCCG 60.439 61.111 9.72 0.00 0.00 6.13
2581 4454 1.378911 TGATGCATGGTCAGTGGCC 60.379 57.895 6.88 6.88 0.00 5.36
2582 4455 2.104267 CTGATGCATGGTCAGTGGC 58.896 57.895 2.46 0.00 38.58 5.01
2586 4459 4.215613 CCATTATCACTGATGCATGGTCAG 59.784 45.833 2.46 9.34 46.60 3.51
2587 4460 4.139038 CCATTATCACTGATGCATGGTCA 58.861 43.478 2.46 0.00 33.31 4.02
2588 4461 4.139786 ACCATTATCACTGATGCATGGTC 58.860 43.478 21.69 0.00 40.39 4.02
2589 4462 4.139786 GACCATTATCACTGATGCATGGT 58.860 43.478 24.84 24.84 43.72 3.55
2590 4463 4.395625 AGACCATTATCACTGATGCATGG 58.604 43.478 20.81 20.81 38.79 3.66
2591 4464 5.049612 GTGAGACCATTATCACTGATGCATG 60.050 44.000 2.46 4.37 42.06 4.06
2592 4465 5.061853 GTGAGACCATTATCACTGATGCAT 58.938 41.667 0.00 0.00 42.06 3.96
2593 4466 4.445453 GTGAGACCATTATCACTGATGCA 58.555 43.478 1.42 0.00 42.06 3.96
2594 4467 3.812053 GGTGAGACCATTATCACTGATGC 59.188 47.826 1.42 0.00 44.23 3.91
2599 4472 3.802948 GTCGGTGAGACCATTATCACT 57.197 47.619 5.42 0.00 44.23 3.41
3022 4896 0.324368 ACCATGGACACCGAGCTCTA 60.324 55.000 21.47 0.00 0.00 2.43
3205 5079 2.607750 GCTCCACCTGGGTCTCCA 60.608 66.667 0.00 0.00 41.58 3.86
3248 9430 5.240013 TGGATAAGGCATGCATACATACA 57.760 39.130 21.36 13.42 33.67 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.