Multiple sequence alignment - TraesCS3D01G508500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G508500 chr3D 100.000 1699 0 0 1 1699 594683711 594685409 0.000000e+00 3138.0
1 TraesCS3D01G508500 chr3D 90.690 870 58 10 645 1510 594771945 594772795 0.000000e+00 1136.0
2 TraesCS3D01G508500 chr3D 89.006 855 69 12 660 1510 594643111 594643944 0.000000e+00 1035.0
3 TraesCS3D01G508500 chr3D 88.651 608 60 8 1046 1649 594772952 594773554 0.000000e+00 732.0
4 TraesCS3D01G508500 chr3D 88.158 608 63 8 1046 1649 594644101 594644703 0.000000e+00 715.0
5 TraesCS3D01G508500 chr3D 100.000 354 0 0 1884 2237 594685594 594685947 0.000000e+00 654.0
6 TraesCS3D01G508500 chr3D 84.889 450 43 15 211 644 594642719 594643159 4.410000e-117 431.0
7 TraesCS3D01G508500 chr3D 86.070 402 41 5 253 644 594771613 594772009 3.440000e-113 418.0
8 TraesCS3D01G508500 chr3D 80.290 345 53 10 254 586 594800101 594800442 1.720000e-61 246.0
9 TraesCS3D01G508500 chr3D 83.645 214 19 12 1 208 594642663 594642866 1.050000e-43 187.0
10 TraesCS3D01G508500 chr3D 75.921 407 57 25 833 1229 594638661 594639036 1.060000e-38 171.0
11 TraesCS3D01G508500 chr3D 100.000 32 0 0 1504 1535 594643963 594643994 2.400000e-05 60.2
12 TraesCS3D01G508500 chr3D 100.000 32 0 0 1504 1535 594772814 594772845 2.400000e-05 60.2
13 TraesCS3D01G508500 chr3A 87.250 1051 74 22 645 1649 725556169 725557205 0.000000e+00 1144.0
14 TraesCS3D01G508500 chr3A 87.250 1051 74 22 645 1649 725598717 725599753 0.000000e+00 1144.0
15 TraesCS3D01G508500 chr3A 87.079 712 55 23 926 1629 725461493 725462175 0.000000e+00 771.0
16 TraesCS3D01G508500 chr3A 90.930 441 28 8 214 644 725460807 725461245 1.150000e-162 582.0
17 TraesCS3D01G508500 chr3A 87.032 401 39 5 253 644 725555836 725556232 7.330000e-120 440.0
18 TraesCS3D01G508500 chr3A 87.032 401 39 5 253 644 725598384 725598780 7.330000e-120 440.0
19 TraesCS3D01G508500 chr3A 90.726 248 20 2 660 905 725461197 725461443 5.960000e-86 327.0
20 TraesCS3D01G508500 chr3A 80.247 405 60 13 254 644 725601770 725602168 1.010000e-73 287.0
21 TraesCS3D01G508500 chr3A 80.000 405 61 13 254 644 725559441 725559839 4.700000e-72 281.0
22 TraesCS3D01G508500 chr3A 77.349 415 60 19 254 644 725476558 725476962 4.840000e-52 215.0
23 TraesCS3D01G508500 chr3A 78.146 151 20 7 504 644 725517839 725517986 1.420000e-12 84.2
24 TraesCS3D01G508500 chr7D 98.870 354 4 0 1884 2237 590336811 590337164 1.130000e-177 632.0
25 TraesCS3D01G508500 chr7D 98.870 354 4 0 1884 2237 613299176 613299529 1.130000e-177 632.0
26 TraesCS3D01G508500 chr2D 98.870 354 4 0 1884 2237 17033934 17034287 1.130000e-177 632.0
27 TraesCS3D01G508500 chr1D 98.870 354 4 0 1884 2237 439723269 439722916 1.130000e-177 632.0
28 TraesCS3D01G508500 chrUn 98.588 354 5 0 1884 2237 68037094 68036741 5.240000e-176 627.0
29 TraesCS3D01G508500 chrUn 98.588 354 5 0 1884 2237 386984128 386984481 5.240000e-176 627.0
30 TraesCS3D01G508500 chr6D 98.588 354 5 0 1884 2237 13850059 13849706 5.240000e-176 627.0
31 TraesCS3D01G508500 chr6D 98.588 354 5 0 1884 2237 37611795 37611442 5.240000e-176 627.0
32 TraesCS3D01G508500 chr6D 98.588 354 5 0 1884 2237 364217743 364217390 5.240000e-176 627.0
33 TraesCS3D01G508500 chr3B 86.667 405 34 13 253 644 798231604 798232001 4.410000e-117 431.0
34 TraesCS3D01G508500 chr3B 88.043 368 39 3 1284 1649 798232579 798232943 4.410000e-117 431.0
35 TraesCS3D01G508500 chr3B 87.688 333 33 4 926 1251 798232248 798232579 4.510000e-102 381.0
36 TraesCS3D01G508500 chr3B 83.434 332 48 5 254 579 798251471 798251801 3.610000e-78 302.0
37 TraesCS3D01G508500 chr3B 73.846 195 37 12 1376 1561 798252291 798252480 5.160000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G508500 chr3D 594683711 594685947 2236 False 1896.000000 3138 100.000000 1 2237 2 chr3D.!!$F3 2236
1 TraesCS3D01G508500 chr3D 594771613 594773554 1941 False 586.550000 1136 91.352750 253 1649 4 chr3D.!!$F4 1396
2 TraesCS3D01G508500 chr3D 594638661 594644703 6042 False 433.200000 1035 86.936500 1 1649 6 chr3D.!!$F2 1648
3 TraesCS3D01G508500 chr3A 725598384 725602168 3784 False 623.666667 1144 84.843000 253 1649 3 chr3A.!!$F5 1396
4 TraesCS3D01G508500 chr3A 725555836 725559839 4003 False 621.666667 1144 84.760667 253 1649 3 chr3A.!!$F4 1396
5 TraesCS3D01G508500 chr3A 725460807 725462175 1368 False 560.000000 771 89.578333 214 1629 3 chr3A.!!$F3 1415
6 TraesCS3D01G508500 chr3B 798231604 798232943 1339 False 414.333333 431 87.466000 253 1649 3 chr3B.!!$F1 1396

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
509 4539 0.036388 CGGCACAGAACCTGTACCAT 60.036 55.0 14.62 0.0 45.49 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1885 6653 0.106918 AGCGGGAAACAAGTTGACCA 60.107 50.0 10.54 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 4030 8.444715 TGTGATAAAATACGTATGTTTGGTGAC 58.555 33.333 15.98 8.14 0.00 3.67
33 4040 4.806342 ACGTATGTTTGGTGACAGTTTC 57.194 40.909 0.00 0.00 44.54 2.78
42 4049 1.658994 GTGACAGTTTCGGTCCAACA 58.341 50.000 0.00 0.00 34.36 3.33
46 4053 3.070446 TGACAGTTTCGGTCCAACATACT 59.930 43.478 0.00 0.00 34.36 2.12
50 4057 4.093408 CAGTTTCGGTCCAACATACTGATG 59.907 45.833 0.00 0.00 39.16 3.07
51 4058 4.020573 AGTTTCGGTCCAACATACTGATGA 60.021 41.667 0.00 0.00 36.48 2.92
53 4060 3.857052 TCGGTCCAACATACTGATGAAC 58.143 45.455 0.00 0.00 36.48 3.18
54 4061 3.259625 TCGGTCCAACATACTGATGAACA 59.740 43.478 0.00 0.00 36.48 3.18
55 4062 4.081142 TCGGTCCAACATACTGATGAACAT 60.081 41.667 0.00 0.00 36.48 2.71
56 4063 5.128008 TCGGTCCAACATACTGATGAACATA 59.872 40.000 0.00 0.00 36.48 2.29
57 4064 5.991606 CGGTCCAACATACTGATGAACATAT 59.008 40.000 0.00 0.00 36.48 1.78
79 4086 9.684448 CATATATAGATGCAACCTAATACTCCG 57.316 37.037 0.00 0.00 0.00 4.63
80 4087 7.719871 ATATAGATGCAACCTAATACTCCGT 57.280 36.000 0.00 0.00 0.00 4.69
81 4088 8.818622 ATATAGATGCAACCTAATACTCCGTA 57.181 34.615 0.00 0.00 0.00 4.02
82 4089 7.719871 ATAGATGCAACCTAATACTCCGTAT 57.280 36.000 0.00 0.00 0.00 3.06
84 4091 6.827727 AGATGCAACCTAATACTCCGTATTT 58.172 36.000 4.76 0.00 39.18 1.40
85 4092 6.929606 AGATGCAACCTAATACTCCGTATTTC 59.070 38.462 4.76 0.00 39.18 2.17
86 4093 6.229936 TGCAACCTAATACTCCGTATTTCT 57.770 37.500 4.76 0.00 39.18 2.52
87 4094 6.278363 TGCAACCTAATACTCCGTATTTCTC 58.722 40.000 4.76 0.00 39.18 2.87
88 4095 6.097839 TGCAACCTAATACTCCGTATTTCTCT 59.902 38.462 4.76 0.00 39.18 3.10
126 4133 6.012658 TGCATGAGACAGGTAAAATCAAAC 57.987 37.500 0.00 0.00 0.00 2.93
128 4135 5.631026 CATGAGACAGGTAAAATCAAACGG 58.369 41.667 0.00 0.00 0.00 4.44
135 4142 3.892588 AGGTAAAATCAAACGGCTTTCCA 59.107 39.130 0.00 0.00 0.00 3.53
150 4157 1.153539 TTCCACCCAGTTTCCATCCA 58.846 50.000 0.00 0.00 0.00 3.41
152 4159 1.075374 TCCACCCAGTTTCCATCCAAG 59.925 52.381 0.00 0.00 0.00 3.61
169 4176 0.106318 AAGGAGATGATTGGCAGGCC 60.106 55.000 2.62 2.62 0.00 5.19
172 4179 1.245732 GAGATGATTGGCAGGCCATC 58.754 55.000 14.71 13.48 46.64 3.51
178 4185 2.037144 GATTGGCAGGCCATCATTCTT 58.963 47.619 14.71 0.00 46.64 2.52
201 4208 9.859427 TCTTATCCACATGAACAAATCATTTTC 57.141 29.630 0.00 0.00 46.85 2.29
208 4215 9.695526 CACATGAACAAATCATTTTCCTCTTAA 57.304 29.630 0.00 0.00 46.85 1.85
282 4291 2.028130 ACAAATCAAACGGCTTCCACA 58.972 42.857 0.00 0.00 0.00 4.17
492 4516 2.035832 AGGAAAATTCAACAGGCAACGG 59.964 45.455 0.00 0.00 46.39 4.44
493 4517 1.792367 GAAAATTCAACAGGCAACGGC 59.208 47.619 0.00 0.00 46.39 5.68
497 4521 1.723608 TTCAACAGGCAACGGCACAG 61.724 55.000 0.00 0.00 43.71 3.66
502 4532 2.594592 GGCAACGGCACAGAACCT 60.595 61.111 0.00 0.00 43.71 3.50
509 4539 0.036388 CGGCACAGAACCTGTACCAT 60.036 55.000 14.62 0.00 45.49 3.55
556 4588 0.691078 GGTGGACCATGAGAGCCCTA 60.691 60.000 0.00 0.00 35.64 3.53
626 4668 1.722464 GTGCGTGCGTAACTGTCAATA 59.278 47.619 0.00 0.00 0.00 1.90
635 4677 3.865745 CGTAACTGTCAATAGAAGCCCAG 59.134 47.826 0.00 0.00 0.00 4.45
636 4678 4.381612 CGTAACTGTCAATAGAAGCCCAGA 60.382 45.833 0.00 0.00 0.00 3.86
637 4679 4.851639 AACTGTCAATAGAAGCCCAGAT 57.148 40.909 0.00 0.00 0.00 2.90
638 4680 4.414337 ACTGTCAATAGAAGCCCAGATC 57.586 45.455 0.00 0.00 0.00 2.75
639 4681 3.181471 ACTGTCAATAGAAGCCCAGATCG 60.181 47.826 0.00 0.00 0.00 3.69
640 4682 2.766263 TGTCAATAGAAGCCCAGATCGT 59.234 45.455 0.00 0.00 0.00 3.73
641 4683 3.197766 TGTCAATAGAAGCCCAGATCGTT 59.802 43.478 0.00 0.00 0.00 3.85
642 4684 3.557595 GTCAATAGAAGCCCAGATCGTTG 59.442 47.826 0.00 0.00 0.00 4.10
643 4685 3.197766 TCAATAGAAGCCCAGATCGTTGT 59.802 43.478 0.00 0.00 0.00 3.32
644 4686 2.672961 TAGAAGCCCAGATCGTTGTG 57.327 50.000 0.00 0.00 0.00 3.33
645 4687 0.674895 AGAAGCCCAGATCGTTGTGC 60.675 55.000 0.00 0.00 0.00 4.57
646 4688 1.970917 GAAGCCCAGATCGTTGTGCG 61.971 60.000 0.00 0.00 43.01 5.34
647 4689 4.166011 GCCCAGATCGTTGTGCGC 62.166 66.667 0.00 0.00 41.07 6.09
648 4690 3.853330 CCCAGATCGTTGTGCGCG 61.853 66.667 0.00 0.00 41.07 6.86
649 4691 4.505217 CCAGATCGTTGTGCGCGC 62.505 66.667 27.26 27.26 41.07 6.86
650 4692 4.833561 CAGATCGTTGTGCGCGCG 62.834 66.667 28.44 28.44 41.07 6.86
652 4694 3.538201 GATCGTTGTGCGCGCGTA 61.538 61.111 32.35 26.20 41.07 4.42
653 4695 3.729850 GATCGTTGTGCGCGCGTAC 62.730 63.158 38.35 38.35 41.07 3.67
680 4722 3.317608 CGTTATCACGTAGGTGCGT 57.682 52.632 10.71 4.85 46.88 5.24
681 4723 2.456942 CGTTATCACGTAGGTGCGTA 57.543 50.000 10.71 3.94 43.83 4.42
682 4724 2.784505 CGTTATCACGTAGGTGCGTAA 58.215 47.619 10.71 9.26 43.83 3.18
683 4725 2.527487 CGTTATCACGTAGGTGCGTAAC 59.473 50.000 21.20 21.20 43.83 2.50
684 4726 3.728864 CGTTATCACGTAGGTGCGTAACT 60.729 47.826 24.56 0.00 43.83 2.24
685 4727 2.273370 ATCACGTAGGTGCGTAACTG 57.727 50.000 10.71 0.00 43.83 3.16
686 4728 0.953727 TCACGTAGGTGCGTAACTGT 59.046 50.000 10.71 0.00 43.83 3.55
687 4729 1.069022 TCACGTAGGTGCGTAACTGTC 60.069 52.381 10.71 0.00 43.83 3.51
688 4730 0.953727 ACGTAGGTGCGTAACTGTCA 59.046 50.000 0.00 0.00 43.83 3.58
689 4731 1.337703 ACGTAGGTGCGTAACTGTCAA 59.662 47.619 0.00 0.00 43.83 3.18
690 4732 2.029649 ACGTAGGTGCGTAACTGTCAAT 60.030 45.455 0.00 0.00 43.83 2.57
691 4733 2.344441 CGTAGGTGCGTAACTGTCAATG 59.656 50.000 0.00 0.00 0.00 2.82
692 4734 1.808411 AGGTGCGTAACTGTCAATGG 58.192 50.000 0.00 0.00 0.00 3.16
693 4735 1.346395 AGGTGCGTAACTGTCAATGGA 59.654 47.619 0.00 0.00 0.00 3.41
694 4736 2.147958 GGTGCGTAACTGTCAATGGAA 58.852 47.619 0.00 0.00 0.00 3.53
695 4737 2.159627 GGTGCGTAACTGTCAATGGAAG 59.840 50.000 0.00 0.00 0.00 3.46
696 4738 1.804151 TGCGTAACTGTCAATGGAAGC 59.196 47.619 0.00 0.00 0.00 3.86
697 4739 1.201921 GCGTAACTGTCAATGGAAGCG 60.202 52.381 0.00 0.00 0.00 4.68
698 4740 1.201921 CGTAACTGTCAATGGAAGCGC 60.202 52.381 0.00 0.00 0.00 5.92
699 4741 1.804151 GTAACTGTCAATGGAAGCGCA 59.196 47.619 11.47 0.00 0.00 6.09
881 4938 0.752658 GCCCTGCTTTTCCAAACAGT 59.247 50.000 0.00 0.00 0.00 3.55
974 5094 7.461363 AGAAAGGAAGAAGGGGAAAAGATAGTA 59.539 37.037 0.00 0.00 0.00 1.82
1108 5238 1.640428 CGCTAAAGATTCTGCCGACA 58.360 50.000 0.00 0.00 0.00 4.35
1151 5905 0.398318 GGTGTGAAGAAGGAGCAGGT 59.602 55.000 0.00 0.00 0.00 4.00
1161 5915 0.178891 AGGAGCAGGTGAGGGAGAAA 60.179 55.000 0.00 0.00 0.00 2.52
1330 6084 3.304726 GCTTGGGATTAAATAGCTTCGGC 60.305 47.826 0.00 0.00 42.17 5.54
1348 6102 1.335051 GGCTGCTCGGTTGAAGTTTTC 60.335 52.381 0.00 0.00 0.00 2.29
1404 6161 6.907853 TCATTGATTGGTTGGTTGTATTCA 57.092 33.333 0.00 0.00 0.00 2.57
1408 6165 6.662865 TGATTGGTTGGTTGTATTCAATGT 57.337 33.333 0.00 0.00 35.92 2.71
1409 6166 6.686630 TGATTGGTTGGTTGTATTCAATGTC 58.313 36.000 0.00 0.00 35.92 3.06
1415 6173 6.589907 GGTTGGTTGTATTCAATGTCCAAATC 59.410 38.462 7.06 1.77 38.23 2.17
1416 6174 6.907853 TGGTTGTATTCAATGTCCAAATCA 57.092 33.333 0.00 0.00 35.92 2.57
1418 6176 5.799936 GGTTGTATTCAATGTCCAAATCACG 59.200 40.000 0.00 0.00 35.92 4.35
1432 6190 1.892209 ATCACGGGTGTTTTCTGTCC 58.108 50.000 0.00 0.00 0.00 4.02
1435 6193 1.535462 CACGGGTGTTTTCTGTCCATC 59.465 52.381 0.00 0.00 0.00 3.51
1443 6201 5.940470 GGTGTTTTCTGTCCATCTACAAGAT 59.060 40.000 0.00 0.00 34.74 2.40
1573 6341 4.010349 CCTACATCACCCTCAAAAAGACC 58.990 47.826 0.00 0.00 0.00 3.85
1578 6346 3.287222 TCACCCTCAAAAAGACCAAGTG 58.713 45.455 0.00 0.00 0.00 3.16
1598 6366 3.797256 GTGTACATCAACTACGAGCATCC 59.203 47.826 0.00 0.00 0.00 3.51
1638 6406 7.893302 TGGTGAAAACCCATATAGATTTGACTT 59.107 33.333 0.00 0.00 0.00 3.01
1649 6417 1.956477 GATTTGACTTGTGCACTGGGT 59.044 47.619 19.41 13.42 0.00 4.51
1650 6418 1.388547 TTTGACTTGTGCACTGGGTC 58.611 50.000 19.41 20.71 0.00 4.46
1651 6419 0.254462 TTGACTTGTGCACTGGGTCA 59.746 50.000 24.64 24.64 35.51 4.02
1652 6420 0.473755 TGACTTGTGCACTGGGTCAT 59.526 50.000 24.64 5.39 32.91 3.06
1653 6421 0.877071 GACTTGTGCACTGGGTCATG 59.123 55.000 19.41 1.29 0.00 3.07
1654 6422 1.174712 ACTTGTGCACTGGGTCATGC 61.175 55.000 19.41 0.00 42.40 4.06
1655 6423 0.892358 CTTGTGCACTGGGTCATGCT 60.892 55.000 19.41 0.00 42.55 3.79
1656 6424 1.174078 TTGTGCACTGGGTCATGCTG 61.174 55.000 19.41 0.00 42.55 4.41
1657 6425 1.601759 GTGCACTGGGTCATGCTGT 60.602 57.895 10.32 0.00 42.55 4.40
1658 6426 1.151221 TGCACTGGGTCATGCTGTT 59.849 52.632 0.00 0.00 42.55 3.16
1659 6427 1.174078 TGCACTGGGTCATGCTGTTG 61.174 55.000 0.00 0.00 42.55 3.33
1661 6429 0.877071 CACTGGGTCATGCTGTTGAC 59.123 55.000 6.50 6.50 44.27 3.18
1667 6435 0.792640 GTCATGCTGTTGACCACTCG 59.207 55.000 4.32 0.00 40.11 4.18
1668 6436 0.392706 TCATGCTGTTGACCACTCGT 59.607 50.000 0.00 0.00 0.00 4.18
1670 6438 1.603802 CATGCTGTTGACCACTCGTTT 59.396 47.619 0.00 0.00 0.00 3.60
1671 6439 2.605837 TGCTGTTGACCACTCGTTTA 57.394 45.000 0.00 0.00 0.00 2.01
1673 6441 2.159014 TGCTGTTGACCACTCGTTTACT 60.159 45.455 0.00 0.00 0.00 2.24
1674 6442 2.870411 GCTGTTGACCACTCGTTTACTT 59.130 45.455 0.00 0.00 0.00 2.24
1675 6443 4.053295 GCTGTTGACCACTCGTTTACTTA 58.947 43.478 0.00 0.00 0.00 2.24
1676 6444 4.084693 GCTGTTGACCACTCGTTTACTTAC 60.085 45.833 0.00 0.00 0.00 2.34
1677 6445 4.370917 TGTTGACCACTCGTTTACTTACC 58.629 43.478 0.00 0.00 0.00 2.85
1678 6446 3.287312 TGACCACTCGTTTACTTACCG 57.713 47.619 0.00 0.00 0.00 4.02
1679 6447 2.884012 TGACCACTCGTTTACTTACCGA 59.116 45.455 0.00 0.00 0.00 4.69
1680 6448 3.237628 GACCACTCGTTTACTTACCGAC 58.762 50.000 0.00 0.00 0.00 4.79
1681 6449 2.029918 ACCACTCGTTTACTTACCGACC 60.030 50.000 0.00 0.00 0.00 4.79
1683 6451 3.305608 CCACTCGTTTACTTACCGACCTT 60.306 47.826 0.00 0.00 0.00 3.50
1684 6452 3.671928 CACTCGTTTACTTACCGACCTTG 59.328 47.826 0.00 0.00 0.00 3.61
1685 6453 3.319122 ACTCGTTTACTTACCGACCTTGT 59.681 43.478 0.00 0.00 0.00 3.16
1686 6454 4.202151 ACTCGTTTACTTACCGACCTTGTT 60.202 41.667 0.00 0.00 0.00 2.83
1688 6456 6.024552 TCGTTTACTTACCGACCTTGTTAT 57.975 37.500 0.00 0.00 0.00 1.89
1691 6459 6.806249 CGTTTACTTACCGACCTTGTTATACA 59.194 38.462 0.00 0.00 0.00 2.29
1692 6460 7.328249 CGTTTACTTACCGACCTTGTTATACAA 59.672 37.037 0.00 0.00 36.54 2.41
1902 6670 0.310854 GCTGGTCAACTTGTTTCCCG 59.689 55.000 0.00 0.00 0.00 5.14
1903 6671 0.310854 CTGGTCAACTTGTTTCCCGC 59.689 55.000 0.00 0.00 0.00 6.13
1904 6672 0.106918 TGGTCAACTTGTTTCCCGCT 60.107 50.000 0.00 0.00 0.00 5.52
1905 6673 1.029681 GGTCAACTTGTTTCCCGCTT 58.970 50.000 0.00 0.00 0.00 4.68
1906 6674 1.407618 GGTCAACTTGTTTCCCGCTTT 59.592 47.619 0.00 0.00 0.00 3.51
1907 6675 2.159156 GGTCAACTTGTTTCCCGCTTTT 60.159 45.455 0.00 0.00 0.00 2.27
1908 6676 3.517602 GTCAACTTGTTTCCCGCTTTTT 58.482 40.909 0.00 0.00 0.00 1.94
1933 6701 5.896073 ACTTTCTTCTTTCTCCTCCTTCA 57.104 39.130 0.00 0.00 0.00 3.02
1935 6703 6.846988 ACTTTCTTCTTTCTCCTCCTTCAAT 58.153 36.000 0.00 0.00 0.00 2.57
1938 6706 9.460019 CTTTCTTCTTTCTCCTCCTTCAATATT 57.540 33.333 0.00 0.00 0.00 1.28
1939 6707 9.813826 TTTCTTCTTTCTCCTCCTTCAATATTT 57.186 29.630 0.00 0.00 0.00 1.40
1941 6709 9.813826 TCTTCTTTCTCCTCCTTCAATATTTTT 57.186 29.630 0.00 0.00 0.00 1.94
1942 6710 9.852091 CTTCTTTCTCCTCCTTCAATATTTTTG 57.148 33.333 0.00 0.00 0.00 2.44
1944 6712 7.671398 TCTTTCTCCTCCTTCAATATTTTTGCT 59.329 33.333 0.00 0.00 0.00 3.91
1945 6713 7.781324 TTCTCCTCCTTCAATATTTTTGCTT 57.219 32.000 0.00 0.00 0.00 3.91
1948 6716 5.422012 TCCTCCTTCAATATTTTTGCTTCCC 59.578 40.000 0.00 0.00 0.00 3.97
1950 6718 6.607198 CCTCCTTCAATATTTTTGCTTCCCTA 59.393 38.462 0.00 0.00 0.00 3.53
1951 6719 7.404671 TCCTTCAATATTTTTGCTTCCCTAC 57.595 36.000 0.00 0.00 0.00 3.18
1952 6720 6.094881 TCCTTCAATATTTTTGCTTCCCTACG 59.905 38.462 0.00 0.00 0.00 3.51
1954 6722 7.362574 CCTTCAATATTTTTGCTTCCCTACGAA 60.363 37.037 0.00 0.00 0.00 3.85
1964 6732 3.522553 CTTCCCTACGAAGTTCATGTCC 58.477 50.000 3.32 0.00 37.78 4.02
1965 6733 2.531771 TCCCTACGAAGTTCATGTCCA 58.468 47.619 3.32 0.00 37.78 4.02
1966 6734 3.104512 TCCCTACGAAGTTCATGTCCAT 58.895 45.455 3.32 0.00 37.78 3.41
1967 6735 4.283337 TCCCTACGAAGTTCATGTCCATA 58.717 43.478 3.32 0.00 37.78 2.74
1976 7227 4.017126 AGTTCATGTCCATAGTCGTCAGA 58.983 43.478 0.00 0.00 0.00 3.27
1989 7240 3.039405 GTCGTCAGACATATTCAGCTCG 58.961 50.000 0.41 0.00 46.32 5.03
1990 7241 2.033424 TCGTCAGACATATTCAGCTCGG 59.967 50.000 0.41 0.00 0.00 4.63
1991 7242 2.131183 GTCAGACATATTCAGCTCGGC 58.869 52.381 0.00 0.00 0.00 5.54
1993 7244 2.432146 TCAGACATATTCAGCTCGGCTT 59.568 45.455 0.00 0.00 36.40 4.35
1996 7247 1.233019 CATATTCAGCTCGGCTTGGG 58.767 55.000 0.00 0.00 36.40 4.12
1997 7248 1.131638 ATATTCAGCTCGGCTTGGGA 58.868 50.000 0.00 0.00 36.40 4.37
1998 7249 0.178068 TATTCAGCTCGGCTTGGGAC 59.822 55.000 0.00 0.00 36.40 4.46
1999 7250 2.859273 ATTCAGCTCGGCTTGGGACG 62.859 60.000 0.00 0.00 46.93 4.79
2003 7254 4.003788 CTCGGCTTGGGACGGTGT 62.004 66.667 0.00 0.00 45.36 4.16
2004 7255 3.934391 CTCGGCTTGGGACGGTGTC 62.934 68.421 0.00 0.00 45.36 3.67
2034 7285 5.966742 AATCCTTAGTCCACTTCTTTTGC 57.033 39.130 0.00 0.00 0.00 3.68
2036 7287 5.048846 TCCTTAGTCCACTTCTTTTGCTT 57.951 39.130 0.00 0.00 0.00 3.91
2037 7288 5.063880 TCCTTAGTCCACTTCTTTTGCTTC 58.936 41.667 0.00 0.00 0.00 3.86
2039 7290 5.180304 CCTTAGTCCACTTCTTTTGCTTCTC 59.820 44.000 0.00 0.00 0.00 2.87
2040 7291 4.156455 AGTCCACTTCTTTTGCTTCTCA 57.844 40.909 0.00 0.00 0.00 3.27
2044 7295 3.879295 CCACTTCTTTTGCTTCTCAGTGA 59.121 43.478 0.00 0.00 33.44 3.41
2047 7298 6.205464 CCACTTCTTTTGCTTCTCAGTGAATA 59.795 38.462 0.00 0.00 33.44 1.75
2048 7299 7.074502 CACTTCTTTTGCTTCTCAGTGAATAC 58.925 38.462 0.00 0.00 33.44 1.89
2049 7300 6.995091 ACTTCTTTTGCTTCTCAGTGAATACT 59.005 34.615 0.00 0.00 37.75 2.12
2050 7301 7.500559 ACTTCTTTTGCTTCTCAGTGAATACTT 59.499 33.333 0.00 0.00 34.07 2.24
2051 7302 7.194607 TCTTTTGCTTCTCAGTGAATACTTG 57.805 36.000 0.00 0.00 34.07 3.16
2052 7303 5.362556 TTTGCTTCTCAGTGAATACTTGC 57.637 39.130 0.00 0.00 34.07 4.01
2053 7304 4.277515 TGCTTCTCAGTGAATACTTGCT 57.722 40.909 0.00 0.00 34.07 3.91
2054 7305 4.645535 TGCTTCTCAGTGAATACTTGCTT 58.354 39.130 0.00 0.00 34.07 3.91
2055 7306 4.453478 TGCTTCTCAGTGAATACTTGCTTG 59.547 41.667 0.00 0.00 34.07 4.01
2056 7307 4.142730 GCTTCTCAGTGAATACTTGCTTGG 60.143 45.833 0.00 0.00 34.07 3.61
2057 7308 3.942829 TCTCAGTGAATACTTGCTTGGG 58.057 45.455 0.00 0.00 34.07 4.12
2058 7309 2.421424 CTCAGTGAATACTTGCTTGGGC 59.579 50.000 0.00 0.00 34.07 5.36
2060 7311 2.421424 CAGTGAATACTTGCTTGGGCTC 59.579 50.000 0.00 0.00 35.56 4.70
2061 7312 2.040278 AGTGAATACTTGCTTGGGCTCA 59.960 45.455 0.00 0.00 39.59 4.26
2063 7314 2.019984 GAATACTTGCTTGGGCTCAGG 58.980 52.381 0.00 0.00 39.59 3.86
2064 7315 0.394899 ATACTTGCTTGGGCTCAGGC 60.395 55.000 14.88 14.88 44.95 4.85
2066 7317 2.034687 TTGCTTGGGCTCAGGCTC 59.965 61.111 22.41 0.00 44.97 4.70
2067 7318 2.481307 CTTGCTTGGGCTCAGGCTCT 62.481 60.000 22.41 0.00 44.97 4.09
2069 7320 1.303970 GCTTGGGCTCAGGCTCTTT 60.304 57.895 14.43 0.00 41.96 2.52
2070 7321 0.897401 GCTTGGGCTCAGGCTCTTTT 60.897 55.000 14.43 0.00 41.96 2.27
2071 7322 1.625511 CTTGGGCTCAGGCTCTTTTT 58.374 50.000 0.00 0.00 40.19 1.94
2087 7338 0.722848 TTTTTCGCCTTCGTATCCGC 59.277 50.000 0.00 0.00 36.96 5.54
2088 7339 1.085501 TTTTCGCCTTCGTATCCGCC 61.086 55.000 0.00 0.00 36.96 6.13
2089 7340 1.952102 TTTCGCCTTCGTATCCGCCT 61.952 55.000 0.00 0.00 36.96 5.52
2090 7341 1.952102 TTCGCCTTCGTATCCGCCTT 61.952 55.000 0.00 0.00 36.96 4.35
2091 7342 1.949631 CGCCTTCGTATCCGCCTTC 60.950 63.158 0.00 0.00 0.00 3.46
2092 7343 1.594564 GCCTTCGTATCCGCCTTCC 60.595 63.158 0.00 0.00 0.00 3.46
2093 7344 1.820581 CCTTCGTATCCGCCTTCCA 59.179 57.895 0.00 0.00 0.00 3.53
2095 7346 1.202651 CCTTCGTATCCGCCTTCCATT 60.203 52.381 0.00 0.00 0.00 3.16
2096 7347 2.561569 CTTCGTATCCGCCTTCCATTT 58.438 47.619 0.00 0.00 0.00 2.32
2097 7348 2.234300 TCGTATCCGCCTTCCATTTC 57.766 50.000 0.00 0.00 0.00 2.17
2098 7349 1.760613 TCGTATCCGCCTTCCATTTCT 59.239 47.619 0.00 0.00 0.00 2.52
2099 7350 2.135933 CGTATCCGCCTTCCATTTCTC 58.864 52.381 0.00 0.00 0.00 2.87
2100 7351 2.483013 CGTATCCGCCTTCCATTTCTCA 60.483 50.000 0.00 0.00 0.00 3.27
2101 7352 3.744660 GTATCCGCCTTCCATTTCTCAT 58.255 45.455 0.00 0.00 0.00 2.90
2102 7353 4.560716 CGTATCCGCCTTCCATTTCTCATA 60.561 45.833 0.00 0.00 0.00 2.15
2103 7354 3.924114 TCCGCCTTCCATTTCTCATAA 57.076 42.857 0.00 0.00 0.00 1.90
2104 7355 4.437682 TCCGCCTTCCATTTCTCATAAT 57.562 40.909 0.00 0.00 0.00 1.28
2105 7356 4.136796 TCCGCCTTCCATTTCTCATAATG 58.863 43.478 0.00 0.00 35.70 1.90
2106 7357 4.136796 CCGCCTTCCATTTCTCATAATGA 58.863 43.478 0.00 0.00 37.65 2.57
2109 7360 4.581824 GCCTTCCATTTCTCATAATGAGCA 59.418 41.667 0.53 0.00 43.95 4.26
2110 7361 5.278364 GCCTTCCATTTCTCATAATGAGCAG 60.278 44.000 0.53 0.00 43.95 4.24
2111 7362 6.060136 CCTTCCATTTCTCATAATGAGCAGA 58.940 40.000 0.53 0.00 43.95 4.26
2112 7363 6.017275 CCTTCCATTTCTCATAATGAGCAGAC 60.017 42.308 0.53 0.00 43.95 3.51
2113 7364 5.052481 TCCATTTCTCATAATGAGCAGACG 58.948 41.667 0.53 0.00 43.95 4.18
2114 7365 4.319333 CCATTTCTCATAATGAGCAGACGC 60.319 45.833 0.53 0.00 43.95 5.19
2115 7366 2.125461 TCTCATAATGAGCAGACGCG 57.875 50.000 3.53 3.53 43.95 6.01
2116 7367 1.135046 CTCATAATGAGCAGACGCGG 58.865 55.000 12.47 0.00 45.49 6.46
2117 7368 0.875908 TCATAATGAGCAGACGCGGC 60.876 55.000 12.47 7.86 45.49 6.53
2118 7369 1.595382 ATAATGAGCAGACGCGGCC 60.595 57.895 9.25 0.00 45.49 6.13
2119 7370 2.310327 ATAATGAGCAGACGCGGCCA 62.310 55.000 9.25 0.00 45.49 5.36
2120 7371 2.514510 TAATGAGCAGACGCGGCCAA 62.515 55.000 9.25 0.00 45.49 4.52
2123 7374 2.672996 AGCAGACGCGGCCAATTT 60.673 55.556 9.25 0.00 45.49 1.82
2124 7375 2.504681 GCAGACGCGGCCAATTTG 60.505 61.111 9.25 0.00 0.00 2.32
2126 7377 2.282180 AGACGCGGCCAATTTGGT 60.282 55.556 9.25 0.00 40.46 3.67
2127 7378 1.901464 AGACGCGGCCAATTTGGTT 60.901 52.632 9.25 0.00 40.46 3.67
2128 7379 1.006688 GACGCGGCCAATTTGGTTT 60.007 52.632 16.62 0.00 40.46 3.27
2129 7380 1.006688 ACGCGGCCAATTTGGTTTC 60.007 52.632 16.62 6.43 40.46 2.78
2130 7381 1.006805 CGCGGCCAATTTGGTTTCA 60.007 52.632 16.62 0.00 40.46 2.69
2137 7388 2.802247 GCCAATTTGGTTTCAGCTTCAC 59.198 45.455 16.62 0.00 40.46 3.18
2138 7389 3.493176 GCCAATTTGGTTTCAGCTTCACT 60.493 43.478 16.62 0.00 40.46 3.41
2139 7390 4.261994 GCCAATTTGGTTTCAGCTTCACTA 60.262 41.667 16.62 0.00 40.46 2.74
2140 7391 5.738783 GCCAATTTGGTTTCAGCTTCACTAA 60.739 40.000 16.62 0.00 40.46 2.24
2141 7392 5.922544 CCAATTTGGTTTCAGCTTCACTAAG 59.077 40.000 7.31 0.00 32.25 2.18
2142 7393 6.461509 CCAATTTGGTTTCAGCTTCACTAAGT 60.462 38.462 7.31 0.00 31.94 2.24
2143 7394 6.715347 ATTTGGTTTCAGCTTCACTAAGTT 57.285 33.333 0.00 0.00 34.99 2.66
2145 7396 4.134563 TGGTTTCAGCTTCACTAAGTTCC 58.865 43.478 0.00 0.00 34.99 3.62
2147 7398 4.134563 GTTTCAGCTTCACTAAGTTCCCA 58.865 43.478 0.00 0.00 34.99 4.37
2149 7400 4.008074 TCAGCTTCACTAAGTTCCCAAG 57.992 45.455 0.00 0.00 34.99 3.61
2151 7402 1.813178 GCTTCACTAAGTTCCCAAGGC 59.187 52.381 0.00 0.00 34.99 4.35
2152 7403 2.437413 CTTCACTAAGTTCCCAAGGCC 58.563 52.381 0.00 0.00 0.00 5.19
2153 7404 1.742308 TCACTAAGTTCCCAAGGCCT 58.258 50.000 0.00 0.00 0.00 5.19
2163 7414 3.826282 CAAGGCCTTGGGAGGAGA 58.174 61.111 34.08 0.00 46.74 3.71
2164 7415 1.606531 CAAGGCCTTGGGAGGAGAG 59.393 63.158 34.08 8.42 46.74 3.20
2165 7416 1.617839 AAGGCCTTGGGAGGAGAGG 60.618 63.158 19.73 0.00 46.74 3.69
2168 7419 4.160818 CCTTGGGAGGAGAGGCTT 57.839 61.111 0.00 0.00 46.74 4.35
2169 7420 1.911471 CCTTGGGAGGAGAGGCTTC 59.089 63.158 0.00 0.00 46.74 3.86
2170 7421 0.911525 CCTTGGGAGGAGAGGCTTCA 60.912 60.000 0.00 0.00 46.74 3.02
2171 7422 0.540923 CTTGGGAGGAGAGGCTTCAG 59.459 60.000 0.00 0.00 0.00 3.02
2172 7423 0.178891 TTGGGAGGAGAGGCTTCAGT 60.179 55.000 0.00 0.00 0.00 3.41
2173 7424 0.906756 TGGGAGGAGAGGCTTCAGTG 60.907 60.000 0.00 0.00 0.00 3.66
2174 7425 0.616111 GGGAGGAGAGGCTTCAGTGA 60.616 60.000 0.00 0.00 0.00 3.41
2175 7426 1.494960 GGAGGAGAGGCTTCAGTGAT 58.505 55.000 0.00 0.00 0.00 3.06
2176 7427 1.138661 GGAGGAGAGGCTTCAGTGATG 59.861 57.143 0.00 0.00 0.00 3.07
2177 7428 1.138661 GAGGAGAGGCTTCAGTGATGG 59.861 57.143 8.02 0.00 0.00 3.51
2178 7429 0.463474 GGAGAGGCTTCAGTGATGGC 60.463 60.000 20.99 20.99 33.61 4.40
2179 7430 0.540923 GAGAGGCTTCAGTGATGGCT 59.459 55.000 28.37 28.37 43.19 4.75
2180 7431 3.077617 GAGGCTTCAGTGATGGCTC 57.922 57.895 32.83 32.83 46.02 4.70
2181 7432 0.463474 GAGGCTTCAGTGATGGCTCC 60.463 60.000 34.61 23.39 46.20 4.70
2182 7433 1.817099 GGCTTCAGTGATGGCTCCG 60.817 63.158 21.19 0.00 31.42 4.63
2183 7434 1.817099 GCTTCAGTGATGGCTCCGG 60.817 63.158 8.02 0.00 0.00 5.14
2184 7435 1.599047 CTTCAGTGATGGCTCCGGT 59.401 57.895 0.00 0.00 0.00 5.28
2185 7436 0.824109 CTTCAGTGATGGCTCCGGTA 59.176 55.000 0.00 0.00 0.00 4.02
2187 7438 1.144057 CAGTGATGGCTCCGGTACC 59.856 63.158 0.16 0.16 0.00 3.34
2189 7440 2.064581 GTGATGGCTCCGGTACCCT 61.065 63.158 6.25 3.36 0.00 4.34
2191 7442 1.146263 GATGGCTCCGGTACCCTTG 59.854 63.158 6.25 0.00 0.00 3.61
2192 7443 1.615424 ATGGCTCCGGTACCCTTGT 60.615 57.895 6.25 0.00 0.00 3.16
2193 7444 1.910580 ATGGCTCCGGTACCCTTGTG 61.911 60.000 6.25 0.00 0.00 3.33
2194 7445 2.267961 GCTCCGGTACCCTTGTGG 59.732 66.667 6.25 0.82 41.37 4.17
2210 7461 5.396436 CCCTTGTGGTCTTAGGTACATAAGG 60.396 48.000 23.14 10.20 45.88 2.69
2213 7464 4.713321 TGTGGTCTTAGGTACATAAGGGTC 59.287 45.833 23.14 14.90 34.20 4.46
2214 7465 4.100653 GTGGTCTTAGGTACATAAGGGTCC 59.899 50.000 23.14 21.11 34.20 4.46
2217 7468 2.386829 TAGGTACATAAGGGTCCGGG 57.613 55.000 0.00 0.00 0.00 5.73
2218 7469 0.340908 AGGTACATAAGGGTCCGGGT 59.659 55.000 0.00 0.00 0.00 5.28
2219 7470 1.206878 GGTACATAAGGGTCCGGGTT 58.793 55.000 0.00 0.00 0.00 4.11
2220 7471 2.023113 AGGTACATAAGGGTCCGGGTTA 60.023 50.000 0.00 0.00 0.00 2.85
2221 7472 2.771372 GGTACATAAGGGTCCGGGTTAA 59.229 50.000 0.00 0.00 0.00 2.01
2223 7474 4.592778 GGTACATAAGGGTCCGGGTTAATA 59.407 45.833 0.00 0.00 0.00 0.98
2224 7475 4.968971 ACATAAGGGTCCGGGTTAATAG 57.031 45.455 0.00 0.00 0.00 1.73
2225 7476 4.301205 ACATAAGGGTCCGGGTTAATAGT 58.699 43.478 0.00 0.00 0.00 2.12
2226 7477 4.346127 ACATAAGGGTCCGGGTTAATAGTC 59.654 45.833 0.00 0.00 0.00 2.59
2227 7478 1.798626 AGGGTCCGGGTTAATAGTCC 58.201 55.000 0.00 0.00 0.00 3.85
2228 7479 1.008693 AGGGTCCGGGTTAATAGTCCA 59.991 52.381 0.00 0.00 0.00 4.02
2229 7480 1.415289 GGGTCCGGGTTAATAGTCCAG 59.585 57.143 0.00 0.00 0.00 3.86
2231 7482 2.391678 GTCCGGGTTAATAGTCCAGGA 58.608 52.381 0.00 0.00 43.60 3.86
2232 7483 2.364647 GTCCGGGTTAATAGTCCAGGAG 59.635 54.545 0.00 0.00 45.63 3.69
2233 7484 1.070289 CCGGGTTAATAGTCCAGGAGC 59.930 57.143 0.00 0.00 40.59 4.70
2234 7485 1.269621 CGGGTTAATAGTCCAGGAGCG 60.270 57.143 0.00 0.00 0.00 5.03
2235 7486 1.070289 GGGTTAATAGTCCAGGAGCGG 59.930 57.143 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.000486 TCACCAAACATACGTATTTTATCACAA 58.000 29.630 5.03 0.00 0.00 3.33
2 3 8.444715 TGTCACCAAACATACGTATTTTATCAC 58.555 33.333 5.03 1.20 0.00 3.06
4 5 8.662141 ACTGTCACCAAACATACGTATTTTATC 58.338 33.333 5.03 0.00 0.00 1.75
13 4016 3.363575 CCGAAACTGTCACCAAACATACG 60.364 47.826 0.00 0.00 0.00 3.06
20 4023 0.542333 TGGACCGAAACTGTCACCAA 59.458 50.000 0.00 0.00 34.36 3.67
22 4025 0.942252 GTTGGACCGAAACTGTCACC 59.058 55.000 0.00 0.00 34.36 4.02
27 4030 3.659786 TCAGTATGTTGGACCGAAACTG 58.340 45.455 11.50 11.50 37.40 3.16
33 4040 3.595173 TGTTCATCAGTATGTTGGACCG 58.405 45.455 0.00 0.00 42.40 4.79
53 4060 9.684448 CGGAGTATTAGGTTGCATCTATATATG 57.316 37.037 0.00 0.00 0.00 1.78
54 4061 9.422681 ACGGAGTATTAGGTTGCATCTATATAT 57.577 33.333 0.00 0.00 41.94 0.86
55 4062 8.818622 ACGGAGTATTAGGTTGCATCTATATA 57.181 34.615 0.00 0.00 41.94 0.86
56 4063 7.719871 ACGGAGTATTAGGTTGCATCTATAT 57.280 36.000 0.00 0.00 41.94 0.86
75 4082 9.544314 CACGTTTATCTATAGAGAAATACGGAG 57.456 37.037 26.04 18.54 37.54 4.63
81 4088 9.935241 ATGCATCACGTTTATCTATAGAGAAAT 57.065 29.630 21.88 7.75 37.54 2.17
82 4089 9.196552 CATGCATCACGTTTATCTATAGAGAAA 57.803 33.333 16.66 16.66 34.61 2.52
84 4091 8.110860 TCATGCATCACGTTTATCTATAGAGA 57.889 34.615 8.70 0.00 35.71 3.10
85 4092 8.239998 TCTCATGCATCACGTTTATCTATAGAG 58.760 37.037 8.70 0.00 0.00 2.43
86 4093 8.023706 GTCTCATGCATCACGTTTATCTATAGA 58.976 37.037 4.57 4.57 0.00 1.98
87 4094 7.809806 TGTCTCATGCATCACGTTTATCTATAG 59.190 37.037 0.00 0.00 0.00 1.31
88 4095 7.657336 TGTCTCATGCATCACGTTTATCTATA 58.343 34.615 0.00 0.00 0.00 1.31
126 4133 1.524008 GGAAACTGGGTGGAAAGCCG 61.524 60.000 0.00 0.00 36.79 5.52
128 4135 1.546029 GATGGAAACTGGGTGGAAAGC 59.454 52.381 0.00 0.00 0.00 3.51
135 4142 1.355720 CTCCTTGGATGGAAACTGGGT 59.644 52.381 0.00 0.00 35.43 4.51
150 4157 0.106318 GGCCTGCCAATCATCTCCTT 60.106 55.000 2.58 0.00 35.81 3.36
152 4159 1.228228 TGGCCTGCCAATCATCTCC 59.772 57.895 8.75 0.00 44.12 3.71
169 4176 9.459640 GATTTGTTCATGTGGATAAGAATGATG 57.540 33.333 0.00 0.00 0.00 3.07
172 4179 9.811995 AATGATTTGTTCATGTGGATAAGAATG 57.188 29.630 0.00 0.00 44.51 2.67
178 4185 8.365060 AGGAAAATGATTTGTTCATGTGGATA 57.635 30.769 0.00 0.00 44.51 2.59
244 4251 1.535028 TGTCCATGTTTCACGCATCAC 59.465 47.619 0.00 0.00 0.00 3.06
245 4252 1.889545 TGTCCATGTTTCACGCATCA 58.110 45.000 0.00 0.00 0.00 3.07
246 4253 2.987413 TTGTCCATGTTTCACGCATC 57.013 45.000 0.00 0.00 0.00 3.91
247 4254 3.255395 TGATTTGTCCATGTTTCACGCAT 59.745 39.130 0.00 0.00 0.00 4.73
248 4255 2.620585 TGATTTGTCCATGTTTCACGCA 59.379 40.909 0.00 0.00 0.00 5.24
249 4256 3.281341 TGATTTGTCCATGTTTCACGC 57.719 42.857 0.00 0.00 0.00 5.34
250 4257 4.146271 CGTTTGATTTGTCCATGTTTCACG 59.854 41.667 0.00 0.00 0.00 4.35
251 4258 4.444056 CCGTTTGATTTGTCCATGTTTCAC 59.556 41.667 0.00 0.00 0.00 3.18
282 4291 2.044793 TCTCCTGGGATGGAAAGTGT 57.955 50.000 0.00 0.00 35.43 3.55
509 4539 1.203758 CTGTAGTGTATGTGGCGTGGA 59.796 52.381 0.00 0.00 0.00 4.02
626 4668 0.674895 GCACAACGATCTGGGCTTCT 60.675 55.000 2.04 0.00 42.76 2.85
644 4686 3.460278 TACAACACGTACGCGCGC 61.460 61.111 32.58 23.91 42.83 6.86
645 4687 2.383862 GTACAACACGTACGCGCG 59.616 61.111 30.96 30.96 41.13 6.86
654 4696 4.321745 CACCTACGTGATAACGTACAACAC 59.678 45.833 11.57 0.00 45.19 3.32
655 4697 4.475028 CACCTACGTGATAACGTACAACA 58.525 43.478 11.57 0.00 45.19 3.33
656 4698 3.301642 GCACCTACGTGATAACGTACAAC 59.698 47.826 11.57 0.00 45.19 3.32
657 4699 3.500982 GCACCTACGTGATAACGTACAA 58.499 45.455 11.57 0.00 45.19 2.41
658 4700 2.476018 CGCACCTACGTGATAACGTACA 60.476 50.000 11.57 0.00 45.19 2.90
659 4701 2.104144 CGCACCTACGTGATAACGTAC 58.896 52.381 11.57 1.48 45.19 3.67
660 4702 1.737236 ACGCACCTACGTGATAACGTA 59.263 47.619 14.73 14.73 46.28 3.57
661 4703 0.523072 ACGCACCTACGTGATAACGT 59.477 50.000 13.91 13.91 46.28 3.99
662 4704 3.317608 ACGCACCTACGTGATAACG 57.682 52.632 0.00 0.00 46.28 3.18
670 4712 2.054687 TTGACAGTTACGCACCTACG 57.945 50.000 0.00 0.00 39.50 3.51
671 4713 2.671396 CCATTGACAGTTACGCACCTAC 59.329 50.000 0.00 0.00 0.00 3.18
672 4714 2.563620 TCCATTGACAGTTACGCACCTA 59.436 45.455 0.00 0.00 0.00 3.08
673 4715 1.346395 TCCATTGACAGTTACGCACCT 59.654 47.619 0.00 0.00 0.00 4.00
674 4716 1.803334 TCCATTGACAGTTACGCACC 58.197 50.000 0.00 0.00 0.00 5.01
675 4717 2.412847 GCTTCCATTGACAGTTACGCAC 60.413 50.000 0.00 0.00 0.00 5.34
676 4718 1.804151 GCTTCCATTGACAGTTACGCA 59.196 47.619 0.00 0.00 0.00 5.24
677 4719 1.201921 CGCTTCCATTGACAGTTACGC 60.202 52.381 0.00 0.00 0.00 4.42
678 4720 1.201921 GCGCTTCCATTGACAGTTACG 60.202 52.381 0.00 0.00 0.00 3.18
679 4721 1.804151 TGCGCTTCCATTGACAGTTAC 59.196 47.619 9.73 0.00 0.00 2.50
680 4722 2.177394 TGCGCTTCCATTGACAGTTA 57.823 45.000 9.73 0.00 0.00 2.24
681 4723 1.538047 ATGCGCTTCCATTGACAGTT 58.462 45.000 9.73 0.00 0.00 3.16
682 4724 2.401583 TATGCGCTTCCATTGACAGT 57.598 45.000 9.73 0.00 0.00 3.55
683 4725 2.096565 CGATATGCGCTTCCATTGACAG 60.097 50.000 9.73 0.00 0.00 3.51
684 4726 1.866601 CGATATGCGCTTCCATTGACA 59.133 47.619 9.73 0.00 0.00 3.58
685 4727 1.867233 ACGATATGCGCTTCCATTGAC 59.133 47.619 9.73 0.00 46.04 3.18
686 4728 2.238942 ACGATATGCGCTTCCATTGA 57.761 45.000 9.73 0.00 46.04 2.57
687 4729 2.032054 ACAACGATATGCGCTTCCATTG 59.968 45.455 9.73 8.99 46.04 2.82
688 4730 2.287915 GACAACGATATGCGCTTCCATT 59.712 45.455 9.73 0.00 46.04 3.16
689 4731 1.867233 GACAACGATATGCGCTTCCAT 59.133 47.619 9.73 0.00 46.04 3.41
690 4732 1.286501 GACAACGATATGCGCTTCCA 58.713 50.000 9.73 0.00 46.04 3.53
691 4733 0.229753 CGACAACGATATGCGCTTCC 59.770 55.000 9.73 0.00 46.04 3.46
692 4734 0.921347 ACGACAACGATATGCGCTTC 59.079 50.000 9.73 1.93 46.04 3.86
693 4735 1.060553 CAACGACAACGATATGCGCTT 59.939 47.619 9.73 4.59 46.04 4.68
694 4736 0.645355 CAACGACAACGATATGCGCT 59.355 50.000 9.73 0.00 46.04 5.92
695 4737 0.919427 GCAACGACAACGATATGCGC 60.919 55.000 0.00 0.00 46.04 6.09
697 4739 0.643310 TCGCAACGACAACGATATGC 59.357 50.000 0.00 0.00 42.66 3.14
881 4938 2.498078 TGCTGATCCGGTGTGTATGTTA 59.502 45.455 0.00 0.00 0.00 2.41
1108 5238 1.952296 CTGTTGCTTCTTCTTGCCACT 59.048 47.619 0.00 0.00 0.00 4.00
1151 5905 4.137543 GTTGCTCTTCTTTTTCTCCCTCA 58.862 43.478 0.00 0.00 0.00 3.86
1161 5915 2.222027 CGGTCAAGGTTGCTCTTCTTT 58.778 47.619 0.00 0.00 0.00 2.52
1330 6084 2.872245 TCTGAAAACTTCAACCGAGCAG 59.128 45.455 0.00 0.00 39.58 4.24
1348 6102 5.164233 ACATGTGACGACAGTAGAAATCTG 58.836 41.667 0.00 0.00 34.87 2.90
1404 6161 2.286365 ACACCCGTGATTTGGACATT 57.714 45.000 0.96 0.00 0.00 2.71
1408 6165 2.621055 CAGAAAACACCCGTGATTTGGA 59.379 45.455 7.69 0.00 36.03 3.53
1409 6166 2.360801 ACAGAAAACACCCGTGATTTGG 59.639 45.455 7.69 3.48 36.03 3.28
1415 6173 1.535462 GATGGACAGAAAACACCCGTG 59.465 52.381 0.00 0.00 0.00 4.94
1416 6174 1.420138 AGATGGACAGAAAACACCCGT 59.580 47.619 0.00 0.00 0.00 5.28
1418 6176 4.015872 TGTAGATGGACAGAAAACACCC 57.984 45.455 0.00 0.00 0.00 4.61
1459 6217 9.832445 GAAGTAGGAAACAATTAGTATCATGGA 57.168 33.333 0.00 0.00 0.00 3.41
1471 6229 6.133356 TCCAACAAAGGAAGTAGGAAACAAT 58.867 36.000 0.00 0.00 33.93 2.71
1573 6341 4.234574 TGCTCGTAGTTGATGTACACTTG 58.765 43.478 0.00 0.00 0.00 3.16
1578 6346 4.308899 AGGATGCTCGTAGTTGATGTAC 57.691 45.455 0.00 0.00 0.00 2.90
1616 6384 7.702348 GCACAAGTCAAATCTATATGGGTTTTC 59.298 37.037 0.00 0.00 0.00 2.29
1638 6406 1.601477 CAGCATGACCCAGTGCACA 60.601 57.895 21.04 0.00 43.63 4.57
1649 6417 0.392706 ACGAGTGGTCAACAGCATGA 59.607 50.000 0.00 0.00 39.69 3.07
1650 6418 1.229428 AACGAGTGGTCAACAGCATG 58.771 50.000 0.00 0.00 46.00 4.06
1651 6419 1.967319 AAACGAGTGGTCAACAGCAT 58.033 45.000 0.00 0.00 31.14 3.79
1652 6420 2.159014 AGTAAACGAGTGGTCAACAGCA 60.159 45.455 0.00 0.00 0.00 4.41
1653 6421 2.480845 AGTAAACGAGTGGTCAACAGC 58.519 47.619 0.00 0.00 0.00 4.40
1654 6422 4.446719 GGTAAGTAAACGAGTGGTCAACAG 59.553 45.833 0.00 0.00 0.00 3.16
1655 6423 4.370917 GGTAAGTAAACGAGTGGTCAACA 58.629 43.478 0.00 0.00 0.00 3.33
1656 6424 3.426525 CGGTAAGTAAACGAGTGGTCAAC 59.573 47.826 0.00 0.00 0.00 3.18
1657 6425 3.317711 TCGGTAAGTAAACGAGTGGTCAA 59.682 43.478 0.00 0.00 32.29 3.18
1658 6426 2.884012 TCGGTAAGTAAACGAGTGGTCA 59.116 45.455 0.00 0.00 32.29 4.02
1659 6427 3.237628 GTCGGTAAGTAAACGAGTGGTC 58.762 50.000 0.00 0.00 37.30 4.02
1661 6429 2.229784 AGGTCGGTAAGTAAACGAGTGG 59.770 50.000 0.00 0.00 37.30 4.00
1662 6430 3.565905 AGGTCGGTAAGTAAACGAGTG 57.434 47.619 0.00 0.00 37.30 3.51
1663 6431 3.319122 ACAAGGTCGGTAAGTAAACGAGT 59.681 43.478 0.00 0.00 37.30 4.18
1664 6432 3.905784 ACAAGGTCGGTAAGTAAACGAG 58.094 45.455 0.00 0.00 37.30 4.18
1666 6434 6.806249 TGTATAACAAGGTCGGTAAGTAAACG 59.194 38.462 0.00 0.00 0.00 3.60
1667 6435 8.532977 TTGTATAACAAGGTCGGTAAGTAAAC 57.467 34.615 0.00 0.00 32.34 2.01
1883 6651 0.310854 CGGGAAACAAGTTGACCAGC 59.689 55.000 10.54 0.00 0.00 4.85
1884 6652 0.310854 GCGGGAAACAAGTTGACCAG 59.689 55.000 10.54 11.14 0.00 4.00
1885 6653 0.106918 AGCGGGAAACAAGTTGACCA 60.107 50.000 10.54 0.00 0.00 4.02
1886 6654 1.029681 AAGCGGGAAACAAGTTGACC 58.970 50.000 10.54 9.55 0.00 4.02
1887 6655 2.863401 AAAGCGGGAAACAAGTTGAC 57.137 45.000 10.54 0.63 0.00 3.18
1888 6656 3.878160 AAAAAGCGGGAAACAAGTTGA 57.122 38.095 10.54 0.00 0.00 3.18
1906 6674 9.121658 GAAGGAGGAGAAAGAAGAAAGTAAAAA 57.878 33.333 0.00 0.00 0.00 1.94
1907 6675 8.272173 TGAAGGAGGAGAAAGAAGAAAGTAAAA 58.728 33.333 0.00 0.00 0.00 1.52
1908 6676 7.802117 TGAAGGAGGAGAAAGAAGAAAGTAAA 58.198 34.615 0.00 0.00 0.00 2.01
1909 6677 7.374975 TGAAGGAGGAGAAAGAAGAAAGTAA 57.625 36.000 0.00 0.00 0.00 2.24
1910 6678 6.996180 TGAAGGAGGAGAAAGAAGAAAGTA 57.004 37.500 0.00 0.00 0.00 2.24
1911 6679 5.896073 TGAAGGAGGAGAAAGAAGAAAGT 57.104 39.130 0.00 0.00 0.00 2.66
1912 6680 9.460019 AATATTGAAGGAGGAGAAAGAAGAAAG 57.540 33.333 0.00 0.00 0.00 2.62
1913 6681 9.813826 AAATATTGAAGGAGGAGAAAGAAGAAA 57.186 29.630 0.00 0.00 0.00 2.52
1914 6682 9.813826 AAAATATTGAAGGAGGAGAAAGAAGAA 57.186 29.630 0.00 0.00 0.00 2.52
1928 6696 6.094881 TCGTAGGGAAGCAAAAATATTGAAGG 59.905 38.462 0.00 0.00 0.00 3.46
1929 6697 7.083875 TCGTAGGGAAGCAAAAATATTGAAG 57.916 36.000 0.00 0.00 0.00 3.02
1930 6698 7.455641 TTCGTAGGGAAGCAAAAATATTGAA 57.544 32.000 0.00 0.00 0.00 2.69
1944 6712 2.901192 TGGACATGAACTTCGTAGGGAA 59.099 45.455 0.00 0.00 0.00 3.97
1945 6713 2.531771 TGGACATGAACTTCGTAGGGA 58.468 47.619 0.00 0.00 0.00 4.20
1948 6716 4.970611 CGACTATGGACATGAACTTCGTAG 59.029 45.833 0.00 0.00 0.00 3.51
1950 6718 3.192844 ACGACTATGGACATGAACTTCGT 59.807 43.478 0.00 1.29 32.63 3.85
1951 6719 3.770666 ACGACTATGGACATGAACTTCG 58.229 45.455 0.00 0.64 0.00 3.79
1952 6720 4.744570 TGACGACTATGGACATGAACTTC 58.255 43.478 0.00 0.00 0.00 3.01
1954 6722 4.017126 TCTGACGACTATGGACATGAACT 58.983 43.478 0.00 0.00 0.00 3.01
1956 6724 3.761752 TGTCTGACGACTATGGACATGAA 59.238 43.478 0.00 0.00 40.86 2.57
1959 6727 6.265422 TGAATATGTCTGACGACTATGGACAT 59.735 38.462 10.85 10.85 45.59 3.06
1960 6728 5.592688 TGAATATGTCTGACGACTATGGACA 59.407 40.000 2.98 0.00 40.86 4.02
1962 6730 5.278512 GCTGAATATGTCTGACGACTATGGA 60.279 44.000 2.98 0.00 40.86 3.41
1964 6732 5.767269 AGCTGAATATGTCTGACGACTATG 58.233 41.667 2.98 0.00 40.86 2.23
1965 6733 5.334491 CGAGCTGAATATGTCTGACGACTAT 60.334 44.000 2.98 0.00 40.86 2.12
1966 6734 4.024809 CGAGCTGAATATGTCTGACGACTA 60.025 45.833 2.98 0.00 40.86 2.59
1967 6735 3.242903 CGAGCTGAATATGTCTGACGACT 60.243 47.826 2.98 0.00 40.86 4.18
1976 7227 1.475751 CCCAAGCCGAGCTGAATATGT 60.476 52.381 0.00 0.00 39.62 2.29
1980 7231 1.078143 GTCCCAAGCCGAGCTGAAT 60.078 57.895 0.00 0.00 39.62 2.57
1987 7238 3.998672 GACACCGTCCCAAGCCGA 61.999 66.667 0.00 0.00 0.00 5.54
2009 7260 7.069950 AGCAAAAGAAGTGGACTAAGGATTTTT 59.930 33.333 0.00 0.00 0.00 1.94
2010 7261 6.551227 AGCAAAAGAAGTGGACTAAGGATTTT 59.449 34.615 0.00 0.00 0.00 1.82
2011 7262 6.071320 AGCAAAAGAAGTGGACTAAGGATTT 58.929 36.000 0.00 0.00 0.00 2.17
2012 7263 5.635120 AGCAAAAGAAGTGGACTAAGGATT 58.365 37.500 0.00 0.00 0.00 3.01
2013 7264 5.248380 AGCAAAAGAAGTGGACTAAGGAT 57.752 39.130 0.00 0.00 0.00 3.24
2015 7266 5.066593 AGAAGCAAAAGAAGTGGACTAAGG 58.933 41.667 0.00 0.00 0.00 2.69
2016 7267 5.760253 TGAGAAGCAAAAGAAGTGGACTAAG 59.240 40.000 0.00 0.00 0.00 2.18
2017 7268 5.680619 TGAGAAGCAAAAGAAGTGGACTAA 58.319 37.500 0.00 0.00 0.00 2.24
2018 7269 5.163301 ACTGAGAAGCAAAAGAAGTGGACTA 60.163 40.000 0.00 0.00 0.00 2.59
2019 7270 4.133078 CTGAGAAGCAAAAGAAGTGGACT 58.867 43.478 0.00 0.00 0.00 3.85
2021 7272 3.879295 CACTGAGAAGCAAAAGAAGTGGA 59.121 43.478 0.00 0.00 31.98 4.02
2022 7273 3.879295 TCACTGAGAAGCAAAAGAAGTGG 59.121 43.478 0.00 0.00 35.42 4.00
2023 7274 5.490139 TTCACTGAGAAGCAAAAGAAGTG 57.510 39.130 0.00 0.00 35.90 3.16
2024 7275 6.995091 AGTATTCACTGAGAAGCAAAAGAAGT 59.005 34.615 0.00 0.00 40.15 3.01
2028 7279 5.855395 GCAAGTATTCACTGAGAAGCAAAAG 59.145 40.000 0.00 0.00 40.15 2.27
2029 7280 5.532406 AGCAAGTATTCACTGAGAAGCAAAA 59.468 36.000 0.00 0.00 40.15 2.44
2030 7281 5.065914 AGCAAGTATTCACTGAGAAGCAAA 58.934 37.500 0.00 0.00 40.15 3.68
2031 7282 4.645535 AGCAAGTATTCACTGAGAAGCAA 58.354 39.130 0.00 0.00 40.15 3.91
2033 7284 4.142730 CCAAGCAAGTATTCACTGAGAAGC 60.143 45.833 0.00 0.00 40.15 3.86
2034 7285 4.394300 CCCAAGCAAGTATTCACTGAGAAG 59.606 45.833 0.00 0.00 40.15 2.85
2036 7287 3.869912 GCCCAAGCAAGTATTCACTGAGA 60.870 47.826 0.00 0.00 39.53 3.27
2037 7288 2.421424 GCCCAAGCAAGTATTCACTGAG 59.579 50.000 0.00 0.00 39.53 3.35
2039 7290 2.421424 GAGCCCAAGCAAGTATTCACTG 59.579 50.000 0.00 0.00 43.56 3.66
2040 7291 2.040278 TGAGCCCAAGCAAGTATTCACT 59.960 45.455 0.00 0.00 43.56 3.41
2044 7295 1.957113 GCCTGAGCCCAAGCAAGTATT 60.957 52.381 0.00 0.00 43.56 1.89
2047 7298 2.282745 GCCTGAGCCCAAGCAAGT 60.283 61.111 0.00 0.00 43.56 3.16
2048 7299 2.035312 AGCCTGAGCCCAAGCAAG 59.965 61.111 0.00 0.00 43.56 4.01
2049 7300 2.034687 GAGCCTGAGCCCAAGCAA 59.965 61.111 0.00 0.00 43.56 3.91
2050 7301 2.072874 AAAGAGCCTGAGCCCAAGCA 62.073 55.000 0.00 0.00 43.56 3.91
2051 7302 0.897401 AAAAGAGCCTGAGCCCAAGC 60.897 55.000 0.00 0.00 41.25 4.01
2052 7303 1.625511 AAAAAGAGCCTGAGCCCAAG 58.374 50.000 0.00 0.00 41.25 3.61
2053 7304 3.848353 AAAAAGAGCCTGAGCCCAA 57.152 47.368 0.00 0.00 41.25 4.12
2079 7330 9.206121 CATTATGAGAAATGGAAGGCGGATACG 62.206 44.444 0.00 0.00 46.76 3.06
2080 7331 3.194005 TGAGAAATGGAAGGCGGATAC 57.806 47.619 0.00 0.00 0.00 2.24
2081 7332 5.560722 TTATGAGAAATGGAAGGCGGATA 57.439 39.130 0.00 0.00 0.00 2.59
2082 7333 4.437682 TTATGAGAAATGGAAGGCGGAT 57.562 40.909 0.00 0.00 0.00 4.18
2084 7335 4.136796 TCATTATGAGAAATGGAAGGCGG 58.863 43.478 0.00 0.00 37.44 6.13
2097 7348 1.135046 CCGCGTCTGCTCATTATGAG 58.865 55.000 17.16 17.16 46.90 2.90
2098 7349 0.875908 GCCGCGTCTGCTCATTATGA 60.876 55.000 4.92 0.00 39.65 2.15
2099 7350 1.566563 GCCGCGTCTGCTCATTATG 59.433 57.895 4.92 0.00 39.65 1.90
2100 7351 1.595382 GGCCGCGTCTGCTCATTAT 60.595 57.895 4.92 0.00 39.65 1.28
2101 7352 2.202878 GGCCGCGTCTGCTCATTA 60.203 61.111 4.92 0.00 39.65 1.90
2102 7353 3.899981 TTGGCCGCGTCTGCTCATT 62.900 57.895 4.92 0.00 39.65 2.57
2103 7354 3.687321 ATTGGCCGCGTCTGCTCAT 62.687 57.895 4.92 0.00 39.65 2.90
2104 7355 3.899981 AATTGGCCGCGTCTGCTCA 62.900 57.895 4.92 0.00 39.65 4.26
2105 7356 2.690778 AAATTGGCCGCGTCTGCTC 61.691 57.895 4.92 0.00 39.65 4.26
2106 7357 2.672996 AAATTGGCCGCGTCTGCT 60.673 55.556 4.92 0.00 39.65 4.24
2109 7360 1.460273 AAACCAAATTGGCCGCGTCT 61.460 50.000 12.67 0.00 42.67 4.18
2110 7361 1.006688 AAACCAAATTGGCCGCGTC 60.007 52.632 12.67 0.00 42.67 5.19
2111 7362 1.006688 GAAACCAAATTGGCCGCGT 60.007 52.632 12.67 0.00 42.67 6.01
2112 7363 1.006805 TGAAACCAAATTGGCCGCG 60.007 52.632 12.67 0.00 42.67 6.46
2113 7364 1.291184 GCTGAAACCAAATTGGCCGC 61.291 55.000 12.67 4.05 42.67 6.53
2114 7365 0.318120 AGCTGAAACCAAATTGGCCG 59.682 50.000 12.67 0.00 42.67 6.13
2115 7366 2.224257 TGAAGCTGAAACCAAATTGGCC 60.224 45.455 12.67 0.00 42.67 5.36
2116 7367 2.802247 GTGAAGCTGAAACCAAATTGGC 59.198 45.455 12.67 0.00 42.67 4.52
2117 7368 4.326504 AGTGAAGCTGAAACCAAATTGG 57.673 40.909 11.02 11.02 45.02 3.16
2118 7369 6.507023 ACTTAGTGAAGCTGAAACCAAATTG 58.493 36.000 0.00 0.00 35.97 2.32
2119 7370 6.715347 ACTTAGTGAAGCTGAAACCAAATT 57.285 33.333 0.00 0.00 35.97 1.82
2120 7371 6.239036 GGAACTTAGTGAAGCTGAAACCAAAT 60.239 38.462 0.00 0.00 35.97 2.32
2123 7374 4.134563 GGAACTTAGTGAAGCTGAAACCA 58.865 43.478 0.00 0.00 35.97 3.67
2124 7375 3.502595 GGGAACTTAGTGAAGCTGAAACC 59.497 47.826 0.00 0.00 35.97 3.27
2126 7377 4.431416 TGGGAACTTAGTGAAGCTGAAA 57.569 40.909 0.00 0.00 35.97 2.69
2127 7378 4.389374 CTTGGGAACTTAGTGAAGCTGAA 58.611 43.478 0.00 0.00 35.97 3.02
2128 7379 3.244561 CCTTGGGAACTTAGTGAAGCTGA 60.245 47.826 0.00 0.00 35.97 4.26
2129 7380 3.077359 CCTTGGGAACTTAGTGAAGCTG 58.923 50.000 0.00 0.00 35.97 4.24
2130 7381 2.553247 GCCTTGGGAACTTAGTGAAGCT 60.553 50.000 0.00 0.00 35.97 3.74
2147 7398 1.617839 CCTCTCCTCCCAAGGCCTT 60.618 63.158 13.78 13.78 43.02 4.35
2151 7402 0.911525 TGAAGCCTCTCCTCCCAAGG 60.912 60.000 0.00 0.00 44.89 3.61
2152 7403 0.540923 CTGAAGCCTCTCCTCCCAAG 59.459 60.000 0.00 0.00 0.00 3.61
2153 7404 0.178891 ACTGAAGCCTCTCCTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
2156 7407 1.138661 CATCACTGAAGCCTCTCCTCC 59.861 57.143 0.00 0.00 0.00 4.30
2157 7408 1.138661 CCATCACTGAAGCCTCTCCTC 59.861 57.143 0.00 0.00 0.00 3.71
2158 7409 1.202330 CCATCACTGAAGCCTCTCCT 58.798 55.000 0.00 0.00 0.00 3.69
2159 7410 0.463474 GCCATCACTGAAGCCTCTCC 60.463 60.000 0.00 0.00 0.00 3.71
2160 7411 0.540923 AGCCATCACTGAAGCCTCTC 59.459 55.000 1.72 0.00 0.00 3.20
2162 7413 0.463474 GGAGCCATCACTGAAGCCTC 60.463 60.000 1.72 0.00 0.00 4.70
2163 7414 1.606531 GGAGCCATCACTGAAGCCT 59.393 57.895 1.72 0.00 0.00 4.58
2164 7415 1.817099 CGGAGCCATCACTGAAGCC 60.817 63.158 1.72 0.00 0.00 4.35
2165 7416 1.817099 CCGGAGCCATCACTGAAGC 60.817 63.158 0.00 0.00 0.00 3.86
2166 7417 0.824109 TACCGGAGCCATCACTGAAG 59.176 55.000 9.46 0.00 0.00 3.02
2167 7418 0.535335 GTACCGGAGCCATCACTGAA 59.465 55.000 9.46 0.00 0.00 3.02
2168 7419 1.327690 GGTACCGGAGCCATCACTGA 61.328 60.000 9.46 0.00 0.00 3.41
2169 7420 1.144057 GGTACCGGAGCCATCACTG 59.856 63.158 9.46 0.00 0.00 3.66
2170 7421 2.064581 GGGTACCGGAGCCATCACT 61.065 63.158 9.46 0.00 45.84 3.41
2171 7422 2.504519 GGGTACCGGAGCCATCAC 59.495 66.667 9.46 0.00 45.84 3.06
2187 7438 5.396436 CCCTTATGTACCTAAGACCACAAGG 60.396 48.000 16.79 6.23 42.21 3.61
2189 7440 5.095809 ACCCTTATGTACCTAAGACCACAA 58.904 41.667 16.79 0.00 31.58 3.33
2191 7442 4.100653 GGACCCTTATGTACCTAAGACCAC 59.899 50.000 16.79 7.32 31.58 4.16
2192 7443 4.292643 GGACCCTTATGTACCTAAGACCA 58.707 47.826 16.79 0.00 31.58 4.02
2193 7444 3.320256 CGGACCCTTATGTACCTAAGACC 59.680 52.174 16.79 14.68 31.58 3.85
2194 7445 3.320256 CCGGACCCTTATGTACCTAAGAC 59.680 52.174 16.79 9.17 31.58 3.01
2195 7446 3.569491 CCGGACCCTTATGTACCTAAGA 58.431 50.000 16.79 0.00 31.58 2.10
2196 7447 2.631545 CCCGGACCCTTATGTACCTAAG 59.368 54.545 0.73 10.12 0.00 2.18
2197 7448 2.023113 ACCCGGACCCTTATGTACCTAA 60.023 50.000 0.73 0.00 0.00 2.69
2198 7449 1.575304 ACCCGGACCCTTATGTACCTA 59.425 52.381 0.73 0.00 0.00 3.08
2200 7451 1.206878 AACCCGGACCCTTATGTACC 58.793 55.000 0.73 0.00 0.00 3.34
2203 7454 4.301205 ACTATTAACCCGGACCCTTATGT 58.699 43.478 0.73 0.00 0.00 2.29
2206 7457 3.308401 GGACTATTAACCCGGACCCTTA 58.692 50.000 0.73 0.00 0.00 2.69
2207 7458 2.121948 GGACTATTAACCCGGACCCTT 58.878 52.381 0.73 0.00 0.00 3.95
2210 7461 1.415289 CCTGGACTATTAACCCGGACC 59.585 57.143 0.73 0.00 33.36 4.46
2213 7464 1.070289 GCTCCTGGACTATTAACCCGG 59.930 57.143 0.00 0.00 32.94 5.73
2214 7465 1.269621 CGCTCCTGGACTATTAACCCG 60.270 57.143 0.00 0.00 0.00 5.28
2217 7468 2.528041 CCCGCTCCTGGACTATTAAC 57.472 55.000 0.00 0.00 0.00 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.