Multiple sequence alignment - TraesCS3D01G507600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G507600 chr3D 100.000 4557 0 0 1 4557 594076023 594071467 0.000000e+00 8416.0
1 TraesCS3D01G507600 chr3D 92.721 3682 213 23 905 4557 594238655 594242310 0.000000e+00 5264.0
2 TraesCS3D01G507600 chr3D 77.679 672 93 34 3398 4028 593843345 593842690 1.560000e-94 357.0
3 TraesCS3D01G507600 chr3D 82.081 346 49 9 1197 1531 593909409 593909066 2.680000e-72 283.0
4 TraesCS3D01G507600 chr3D 86.547 223 28 1 2814 3034 593768677 593768455 1.270000e-60 244.0
5 TraesCS3D01G507600 chr3D 87.791 172 11 7 2235 2396 593768849 593768678 4.650000e-45 193.0
6 TraesCS3D01G507600 chr3D 81.858 226 29 8 3969 4192 594201342 594201557 3.620000e-41 180.0
7 TraesCS3D01G507600 chr3D 92.000 125 9 1 3261 3385 593909064 593908941 1.690000e-39 174.0
8 TraesCS3D01G507600 chr3A 93.919 3634 187 9 905 4522 724831108 724827493 0.000000e+00 5456.0
9 TraesCS3D01G507600 chr3A 79.056 869 118 31 3261 4077 724780776 724779920 5.190000e-149 538.0
10 TraesCS3D01G507600 chr3A 79.056 869 118 30 3261 4077 745216440 745217296 5.190000e-149 538.0
11 TraesCS3D01G507600 chr3A 95.510 245 10 1 2 245 725122015 725122259 1.540000e-104 390.0
12 TraesCS3D01G507600 chr3A 83.990 406 48 6 2814 3213 724746790 724746396 1.550000e-99 374.0
13 TraesCS3D01G507600 chr3A 85.600 250 21 7 3285 3526 724746353 724746111 9.790000e-62 248.0
14 TraesCS3D01G507600 chr3A 85.864 191 14 8 2229 2410 724746963 724746777 1.670000e-44 191.0
15 TraesCS3D01G507600 chr3A 97.778 45 1 0 1215 1259 724781772 724781728 1.360000e-10 78.7
16 TraesCS3D01G507600 chr3A 97.778 45 1 0 1215 1259 745215444 745215488 1.360000e-10 78.7
17 TraesCS3D01G507600 chr3B 93.086 3370 191 16 904 4246 797460519 797463873 0.000000e+00 4894.0
18 TraesCS3D01G507600 chr3B 90.459 283 23 1 3261 3539 797045654 797045372 2.000000e-98 370.0
19 TraesCS3D01G507600 chr3B 93.416 243 15 1 2 243 798125585 798125827 4.330000e-95 359.0
20 TraesCS3D01G507600 chr3B 86.056 251 16 6 8 257 798095433 798095665 7.570000e-63 252.0
21 TraesCS3D01G507600 chr3B 83.206 262 32 8 336 594 797459299 797459551 3.550000e-56 230.0
22 TraesCS3D01G507600 chr3B 80.531 226 27 11 3969 4192 797456604 797456814 1.700000e-34 158.0
23 TraesCS3D01G507600 chr3B 94.828 58 3 0 259 316 798097421 798097478 1.750000e-14 91.6
24 TraesCS3D01G507600 chr3B 93.103 58 4 0 259 316 798125909 798125966 8.120000e-13 86.1
25 TraesCS3D01G507600 chr3B 85.714 77 8 2 3261 3334 798162487 798162563 1.360000e-10 78.7
26 TraesCS3D01G507600 chrUn 86.275 357 41 5 2811 3160 41883065 41883420 9.250000e-102 381.0
27 TraesCS3D01G507600 chrUn 86.441 354 40 5 2814 3160 288264774 288264422 9.250000e-102 381.0
28 TraesCS3D01G507600 chrUn 87.662 308 25 4 3256 3558 41884869 41885168 3.370000e-91 346.0
29 TraesCS3D01G507600 chr7A 94.239 243 13 1 2 243 92360384 92360142 2.000000e-98 370.0
30 TraesCS3D01G507600 chr7A 95.918 49 2 0 268 316 92360053 92360005 3.780000e-11 80.5
31 TraesCS3D01G507600 chr7D 80.240 167 20 9 755 920 600490523 600490369 3.730000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G507600 chr3D 594071467 594076023 4556 True 8416.000000 8416 100.000000 1 4557 1 chr3D.!!$R2 4556
1 TraesCS3D01G507600 chr3D 594238655 594242310 3655 False 5264.000000 5264 92.721000 905 4557 1 chr3D.!!$F2 3652
2 TraesCS3D01G507600 chr3D 593842690 593843345 655 True 357.000000 357 77.679000 3398 4028 1 chr3D.!!$R1 630
3 TraesCS3D01G507600 chr3A 724827493 724831108 3615 True 5456.000000 5456 93.919000 905 4522 1 chr3A.!!$R1 3617
4 TraesCS3D01G507600 chr3A 724779920 724781772 1852 True 308.350000 538 88.417000 1215 4077 2 chr3A.!!$R3 2862
5 TraesCS3D01G507600 chr3A 745215444 745217296 1852 False 308.350000 538 88.417000 1215 4077 2 chr3A.!!$F2 2862
6 TraesCS3D01G507600 chr3A 724746111 724746963 852 True 271.000000 374 85.151333 2229 3526 3 chr3A.!!$R2 1297
7 TraesCS3D01G507600 chr3B 797456604 797463873 7269 False 1760.666667 4894 85.607667 336 4246 3 chr3B.!!$F2 3910
8 TraesCS3D01G507600 chrUn 41883065 41885168 2103 False 363.500000 381 86.968500 2811 3558 2 chrUn.!!$F1 747

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
718 3963 0.031721 GCGACCCTCGGTATAACTGG 59.968 60.0 0.00 0.00 40.84 4.00 F
946 4191 0.094730 CGAAACTTTGATCGGACGGC 59.905 55.0 0.00 0.00 35.49 5.68 F
989 4237 0.246374 CGAACAATTCGCACGAGTCG 60.246 55.0 11.85 11.85 46.97 4.18 F
990 4238 1.057636 GAACAATTCGCACGAGTCGA 58.942 50.0 21.50 0.00 0.00 4.20 F
2173 6100 0.729116 GCAAGATGTCGTCATGTGGG 59.271 55.0 0.00 0.00 34.06 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1572 5499 0.107312 GCATGTCATCCTGAGCACCT 60.107 55.0 0.00 0.0 0.0 4.00 R
2168 6095 0.322366 TGAAATCATCGCTGCCCACA 60.322 50.0 0.00 0.0 0.0 4.17 R
2173 6100 0.379669 CACCCTGAAATCATCGCTGC 59.620 55.0 0.00 0.0 0.0 5.25 R
2722 6659 0.541392 AGTCACACTCCAGCAACACA 59.459 50.0 0.00 0.0 0.0 3.72 R
3675 9044 0.104487 GCTTACGTTCCCTAGGCCTC 59.896 60.0 9.68 0.0 0.0 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.367285 GTGTAGTTAAATGCACTCCAATCAAA 58.633 34.615 15.52 0.00 33.53 2.69
26 27 8.028938 GTGTAGTTAAATGCACTCCAATCAAAT 58.971 33.333 15.52 0.00 33.53 2.32
27 28 8.584157 TGTAGTTAAATGCACTCCAATCAAATT 58.416 29.630 0.00 0.00 0.00 1.82
29 30 8.986477 AGTTAAATGCACTCCAATCAAATTAC 57.014 30.769 0.00 0.00 0.00 1.89
30 31 8.584157 AGTTAAATGCACTCCAATCAAATTACA 58.416 29.630 0.00 0.00 0.00 2.41
31 32 9.369904 GTTAAATGCACTCCAATCAAATTACAT 57.630 29.630 0.00 0.00 0.00 2.29
32 33 9.941325 TTAAATGCACTCCAATCAAATTACATT 57.059 25.926 0.00 0.00 0.00 2.71
35 36 9.754382 AATGCACTCCAATCAAATTACATTATC 57.246 29.630 0.00 0.00 0.00 1.75
36 37 8.523915 TGCACTCCAATCAAATTACATTATCT 57.476 30.769 0.00 0.00 0.00 1.98
38 39 8.078596 GCACTCCAATCAAATTACATTATCTCC 58.921 37.037 0.00 0.00 0.00 3.71
39 40 8.285394 CACTCCAATCAAATTACATTATCTCCG 58.715 37.037 0.00 0.00 0.00 4.63
40 41 7.445402 ACTCCAATCAAATTACATTATCTCCGG 59.555 37.037 0.00 0.00 0.00 5.14
42 43 7.777910 TCCAATCAAATTACATTATCTCCGGTT 59.222 33.333 0.00 0.00 0.00 4.44
43 44 8.413229 CCAATCAAATTACATTATCTCCGGTTT 58.587 33.333 0.00 0.00 0.00 3.27
44 45 9.801873 CAATCAAATTACATTATCTCCGGTTTT 57.198 29.630 0.00 0.00 0.00 2.43
53 54 8.617290 ACATTATCTCCGGTTTTATATGTTCC 57.383 34.615 0.00 0.00 0.00 3.62
55 56 5.906772 ATCTCCGGTTTTATATGTTCCCT 57.093 39.130 0.00 0.00 0.00 4.20
56 57 5.286267 TCTCCGGTTTTATATGTTCCCTC 57.714 43.478 0.00 0.00 0.00 4.30
57 58 4.102054 TCTCCGGTTTTATATGTTCCCTCC 59.898 45.833 0.00 0.00 0.00 4.30
58 59 4.042174 TCCGGTTTTATATGTTCCCTCCT 58.958 43.478 0.00 0.00 0.00 3.69
59 60 4.475747 TCCGGTTTTATATGTTCCCTCCTT 59.524 41.667 0.00 0.00 0.00 3.36
60 61 5.044698 TCCGGTTTTATATGTTCCCTCCTTT 60.045 40.000 0.00 0.00 0.00 3.11
61 62 5.655090 CCGGTTTTATATGTTCCCTCCTTTT 59.345 40.000 0.00 0.00 0.00 2.27
62 63 6.183360 CCGGTTTTATATGTTCCCTCCTTTTC 60.183 42.308 0.00 0.00 0.00 2.29
64 65 7.094118 CGGTTTTATATGTTCCCTCCTTTTCAA 60.094 37.037 0.00 0.00 0.00 2.69
65 66 8.758829 GGTTTTATATGTTCCCTCCTTTTCAAT 58.241 33.333 0.00 0.00 0.00 2.57
72 73 7.669089 TGTTCCCTCCTTTTCAATTTAACTT 57.331 32.000 0.00 0.00 0.00 2.66
77 78 6.267699 CCCTCCTTTTCAATTTAACTTGGTCT 59.732 38.462 5.79 0.00 0.00 3.85
79 80 7.014230 CCTCCTTTTCAATTTAACTTGGTCTCA 59.986 37.037 5.79 0.00 0.00 3.27
81 82 8.923270 TCCTTTTCAATTTAACTTGGTCTCAAT 58.077 29.630 5.79 0.00 31.75 2.57
85 86 9.691362 TTTCAATTTAACTTGGTCTCAATAAGC 57.309 29.630 5.79 0.00 31.75 3.09
86 87 8.635765 TCAATTTAACTTGGTCTCAATAAGCT 57.364 30.769 5.79 0.00 31.75 3.74
87 88 8.730680 TCAATTTAACTTGGTCTCAATAAGCTC 58.269 33.333 5.79 0.00 31.75 4.09
88 89 8.734386 CAATTTAACTTGGTCTCAATAAGCTCT 58.266 33.333 0.00 0.00 31.75 4.09
89 90 8.870075 ATTTAACTTGGTCTCAATAAGCTCTT 57.130 30.769 0.00 0.00 31.75 2.85
90 91 8.691661 TTTAACTTGGTCTCAATAAGCTCTTT 57.308 30.769 0.00 0.00 31.75 2.52
91 92 6.566197 AACTTGGTCTCAATAAGCTCTTTG 57.434 37.500 0.00 0.00 31.75 2.77
92 93 5.006386 ACTTGGTCTCAATAAGCTCTTTGG 58.994 41.667 8.30 1.55 31.75 3.28
95 96 5.003804 TGGTCTCAATAAGCTCTTTGGTTC 58.996 41.667 8.30 1.32 37.56 3.62
96 97 5.003804 GGTCTCAATAAGCTCTTTGGTTCA 58.996 41.667 8.30 0.00 37.56 3.18
97 98 5.649831 GGTCTCAATAAGCTCTTTGGTTCAT 59.350 40.000 8.30 0.00 37.56 2.57
98 99 6.183360 GGTCTCAATAAGCTCTTTGGTTCATC 60.183 42.308 8.30 0.00 37.56 2.92
99 100 6.372659 GTCTCAATAAGCTCTTTGGTTCATCA 59.627 38.462 8.30 0.00 37.56 3.07
100 101 6.372659 TCTCAATAAGCTCTTTGGTTCATCAC 59.627 38.462 8.30 0.00 37.56 3.06
101 102 6.003326 TCAATAAGCTCTTTGGTTCATCACA 58.997 36.000 8.30 0.00 37.56 3.58
102 103 6.660521 TCAATAAGCTCTTTGGTTCATCACAT 59.339 34.615 8.30 0.00 37.56 3.21
103 104 4.778534 AAGCTCTTTGGTTCATCACATG 57.221 40.909 0.00 0.00 0.00 3.21
104 105 3.087031 AGCTCTTTGGTTCATCACATGG 58.913 45.455 0.00 0.00 0.00 3.66
105 106 3.084039 GCTCTTTGGTTCATCACATGGA 58.916 45.455 0.00 0.00 0.00 3.41
107 108 4.159135 GCTCTTTGGTTCATCACATGGATT 59.841 41.667 0.00 0.00 32.57 3.01
108 109 5.647589 CTCTTTGGTTCATCACATGGATTG 58.352 41.667 0.00 0.00 32.57 2.67
110 111 5.183713 TCTTTGGTTCATCACATGGATTGTC 59.816 40.000 0.00 0.00 36.00 3.18
111 112 3.009026 TGGTTCATCACATGGATTGTCG 58.991 45.455 0.00 0.00 36.00 4.35
113 114 3.310774 GGTTCATCACATGGATTGTCGAG 59.689 47.826 0.00 0.00 36.00 4.04
114 115 3.893326 TCATCACATGGATTGTCGAGT 57.107 42.857 0.00 0.00 36.00 4.18
115 116 3.785486 TCATCACATGGATTGTCGAGTC 58.215 45.455 0.00 0.00 36.00 3.36
116 117 3.448660 TCATCACATGGATTGTCGAGTCT 59.551 43.478 0.00 0.00 36.00 3.24
117 118 3.510388 TCACATGGATTGTCGAGTCTC 57.490 47.619 0.00 0.00 36.00 3.36
118 119 3.092301 TCACATGGATTGTCGAGTCTCT 58.908 45.455 0.00 0.00 36.00 3.10
119 120 3.129462 TCACATGGATTGTCGAGTCTCTC 59.871 47.826 0.00 0.00 36.00 3.20
121 122 3.380004 ACATGGATTGTCGAGTCTCTCTC 59.620 47.826 0.00 0.00 39.62 3.20
132 133 4.343811 GAGTCTCTCTCGATCGTGAAAA 57.656 45.455 19.28 10.54 33.25 2.29
133 134 4.915704 GAGTCTCTCTCGATCGTGAAAAT 58.084 43.478 19.28 8.49 33.25 1.82
136 137 4.859798 GTCTCTCTCGATCGTGAAAATTGT 59.140 41.667 19.28 0.00 0.00 2.71
137 138 5.346281 GTCTCTCTCGATCGTGAAAATTGTT 59.654 40.000 19.28 0.00 0.00 2.83
138 139 5.926542 TCTCTCTCGATCGTGAAAATTGTTT 59.073 36.000 19.28 0.00 0.00 2.83
139 140 5.915857 TCTCTCGATCGTGAAAATTGTTTG 58.084 37.500 19.28 6.22 0.00 2.93
140 141 5.694458 TCTCTCGATCGTGAAAATTGTTTGA 59.306 36.000 19.28 8.23 0.00 2.69
142 143 6.534059 TCTCGATCGTGAAAATTGTTTGATC 58.466 36.000 16.88 0.00 0.00 2.92
143 144 6.368791 TCTCGATCGTGAAAATTGTTTGATCT 59.631 34.615 16.88 0.00 28.47 2.75
144 145 7.544217 TCTCGATCGTGAAAATTGTTTGATCTA 59.456 33.333 16.88 0.00 28.47 1.98
145 146 7.675478 TCGATCGTGAAAATTGTTTGATCTAG 58.325 34.615 15.94 0.00 28.47 2.43
146 147 6.901887 CGATCGTGAAAATTGTTTGATCTAGG 59.098 38.462 7.03 0.00 28.47 3.02
147 148 7.201522 CGATCGTGAAAATTGTTTGATCTAGGA 60.202 37.037 7.03 0.00 28.47 2.94
148 149 7.364522 TCGTGAAAATTGTTTGATCTAGGAG 57.635 36.000 0.00 0.00 0.00 3.69
149 150 7.158697 TCGTGAAAATTGTTTGATCTAGGAGA 58.841 34.615 0.00 0.00 0.00 3.71
150 151 7.331934 TCGTGAAAATTGTTTGATCTAGGAGAG 59.668 37.037 0.00 0.00 0.00 3.20
153 154 8.156820 TGAAAATTGTTTGATCTAGGAGAGACA 58.843 33.333 0.00 0.00 36.87 3.41
155 156 7.487822 AATTGTTTGATCTAGGAGAGACAGA 57.512 36.000 0.00 0.00 36.87 3.41
157 158 5.575157 TGTTTGATCTAGGAGAGACAGACT 58.425 41.667 0.00 0.00 36.87 3.24
158 159 5.417266 TGTTTGATCTAGGAGAGACAGACTG 59.583 44.000 0.00 0.00 36.87 3.51
159 160 4.163441 TGATCTAGGAGAGACAGACTGG 57.837 50.000 7.51 0.00 36.87 4.00
160 161 3.783082 TGATCTAGGAGAGACAGACTGGA 59.217 47.826 7.51 0.00 36.87 3.86
161 162 4.228438 TGATCTAGGAGAGACAGACTGGAA 59.772 45.833 7.51 0.00 36.87 3.53
164 165 3.534357 AGGAGAGACAGACTGGAAAGA 57.466 47.619 7.51 0.00 0.00 2.52
165 166 3.430453 AGGAGAGACAGACTGGAAAGAG 58.570 50.000 7.51 0.00 0.00 2.85
166 167 3.075283 AGGAGAGACAGACTGGAAAGAGA 59.925 47.826 7.51 0.00 0.00 3.10
167 168 3.192633 GGAGAGACAGACTGGAAAGAGAC 59.807 52.174 7.51 0.00 0.00 3.36
168 169 4.079253 GAGAGACAGACTGGAAAGAGACT 58.921 47.826 7.51 0.00 0.00 3.24
169 170 4.479158 AGAGACAGACTGGAAAGAGACTT 58.521 43.478 7.51 0.00 0.00 3.01
170 171 4.280677 AGAGACAGACTGGAAAGAGACTTG 59.719 45.833 7.51 0.00 0.00 3.16
171 172 3.323403 AGACAGACTGGAAAGAGACTTGG 59.677 47.826 7.51 0.00 0.00 3.61
172 173 3.309296 ACAGACTGGAAAGAGACTTGGA 58.691 45.455 7.51 0.00 0.00 3.53
174 175 4.349342 ACAGACTGGAAAGAGACTTGGATT 59.651 41.667 7.51 0.00 0.00 3.01
176 177 4.006319 GACTGGAAAGAGACTTGGATTGG 58.994 47.826 0.00 0.00 0.00 3.16
177 178 2.751806 CTGGAAAGAGACTTGGATTGGC 59.248 50.000 0.00 0.00 0.00 4.52
178 179 2.108075 TGGAAAGAGACTTGGATTGGCA 59.892 45.455 0.00 0.00 0.00 4.92
179 180 3.245371 TGGAAAGAGACTTGGATTGGCAT 60.245 43.478 0.00 0.00 0.00 4.40
180 181 3.379688 GGAAAGAGACTTGGATTGGCATC 59.620 47.826 0.00 0.00 0.00 3.91
181 182 3.726557 AAGAGACTTGGATTGGCATCA 57.273 42.857 0.00 0.00 0.00 3.07
182 183 3.278668 AGAGACTTGGATTGGCATCAG 57.721 47.619 0.00 0.00 0.00 2.90
183 184 2.092538 AGAGACTTGGATTGGCATCAGG 60.093 50.000 0.00 0.00 0.00 3.86
192 193 3.443044 TGGCATCAGGCATAATGGG 57.557 52.632 0.00 0.00 46.46 4.00
193 194 0.828762 TGGCATCAGGCATAATGGGC 60.829 55.000 0.00 0.00 46.46 5.36
194 195 3.047039 GCATCAGGCATAATGGGCT 57.953 52.632 0.00 0.00 45.66 5.19
195 196 2.205022 GCATCAGGCATAATGGGCTA 57.795 50.000 0.00 0.00 42.46 3.93
196 197 2.731572 GCATCAGGCATAATGGGCTAT 58.268 47.619 0.00 0.00 42.46 2.97
197 198 3.889815 GCATCAGGCATAATGGGCTATA 58.110 45.455 0.00 0.00 42.46 1.31
198 199 4.272489 GCATCAGGCATAATGGGCTATAA 58.728 43.478 0.00 0.00 42.46 0.98
199 200 4.891756 GCATCAGGCATAATGGGCTATAAT 59.108 41.667 0.00 0.00 42.46 1.28
201 202 6.363065 CATCAGGCATAATGGGCTATAATCT 58.637 40.000 0.00 0.00 42.46 2.40
202 203 6.392911 TCAGGCATAATGGGCTATAATCTT 57.607 37.500 0.00 0.00 42.46 2.40
205 206 5.253798 AGGCATAATGGGCTATAATCTTGGA 59.746 40.000 0.00 0.00 42.54 3.53
206 207 5.358160 GGCATAATGGGCTATAATCTTGGAC 59.642 44.000 0.00 0.00 0.00 4.02
207 208 6.183347 GCATAATGGGCTATAATCTTGGACT 58.817 40.000 0.00 0.00 0.00 3.85
208 209 6.094603 GCATAATGGGCTATAATCTTGGACTG 59.905 42.308 0.00 0.00 0.00 3.51
209 210 5.912149 AATGGGCTATAATCTTGGACTGA 57.088 39.130 0.00 0.00 0.00 3.41
210 211 5.912149 ATGGGCTATAATCTTGGACTGAA 57.088 39.130 0.00 0.00 0.00 3.02
211 212 5.708736 TGGGCTATAATCTTGGACTGAAA 57.291 39.130 0.00 0.00 0.00 2.69
212 213 5.437060 TGGGCTATAATCTTGGACTGAAAC 58.563 41.667 0.00 0.00 0.00 2.78
213 214 4.511826 GGGCTATAATCTTGGACTGAAACG 59.488 45.833 0.00 0.00 0.00 3.60
214 215 4.024809 GGCTATAATCTTGGACTGAAACGC 60.025 45.833 0.00 0.00 0.00 4.84
215 216 4.570772 GCTATAATCTTGGACTGAAACGCA 59.429 41.667 0.00 0.00 0.00 5.24
216 217 5.064707 GCTATAATCTTGGACTGAAACGCAA 59.935 40.000 0.00 0.00 0.00 4.85
217 218 6.238484 GCTATAATCTTGGACTGAAACGCAAT 60.238 38.462 0.00 0.00 0.00 3.56
218 219 3.837213 ATCTTGGACTGAAACGCAATG 57.163 42.857 0.00 0.00 0.00 2.82
219 220 1.879380 TCTTGGACTGAAACGCAATGG 59.121 47.619 0.00 0.00 0.00 3.16
220 221 1.879380 CTTGGACTGAAACGCAATGGA 59.121 47.619 0.00 0.00 0.00 3.41
221 222 2.198827 TGGACTGAAACGCAATGGAT 57.801 45.000 0.00 0.00 0.00 3.41
222 223 1.811965 TGGACTGAAACGCAATGGATG 59.188 47.619 0.00 0.00 0.00 3.51
223 224 2.083774 GGACTGAAACGCAATGGATGA 58.916 47.619 0.00 0.00 0.00 2.92
226 227 2.159338 ACTGAAACGCAATGGATGATGC 60.159 45.455 0.00 0.00 39.17 3.91
227 228 1.817447 TGAAACGCAATGGATGATGCA 59.183 42.857 0.00 0.00 42.68 3.96
228 229 2.159352 TGAAACGCAATGGATGATGCAG 60.159 45.455 0.00 0.00 42.68 4.41
229 230 1.466856 AACGCAATGGATGATGCAGT 58.533 45.000 0.00 0.00 42.68 4.40
230 231 1.019673 ACGCAATGGATGATGCAGTC 58.980 50.000 0.00 0.00 42.68 3.51
231 232 1.306148 CGCAATGGATGATGCAGTCT 58.694 50.000 0.00 0.00 42.68 3.24
232 233 1.002792 CGCAATGGATGATGCAGTCTG 60.003 52.381 0.00 0.00 42.68 3.51
243 244 2.369870 GCAGTCTGCATTGCATTGC 58.630 52.632 23.33 23.33 44.26 3.56
254 255 4.874534 GCATTGCAGTGCGTTGAT 57.125 50.000 18.93 4.62 35.10 2.57
255 256 2.355797 GCATTGCAGTGCGTTGATG 58.644 52.632 18.93 15.54 35.10 3.07
257 258 0.457166 CATTGCAGTGCGTTGATGGG 60.457 55.000 11.20 0.00 0.00 4.00
259 260 0.250510 TTGCAGTGCGTTGATGGGTA 60.251 50.000 11.20 0.00 0.00 3.69
260 261 0.250510 TGCAGTGCGTTGATGGGTAA 60.251 50.000 11.20 0.00 0.00 2.85
262 263 1.472480 GCAGTGCGTTGATGGGTAATT 59.528 47.619 0.00 0.00 0.00 1.40
265 266 4.188462 CAGTGCGTTGATGGGTAATTCTA 58.812 43.478 0.00 0.00 0.00 2.10
266 267 4.034048 CAGTGCGTTGATGGGTAATTCTAC 59.966 45.833 0.00 0.00 0.00 2.59
267 268 3.936453 GTGCGTTGATGGGTAATTCTACA 59.064 43.478 0.00 0.00 0.00 2.74
268 269 4.574828 GTGCGTTGATGGGTAATTCTACAT 59.425 41.667 0.00 0.00 0.00 2.29
269 270 5.065988 GTGCGTTGATGGGTAATTCTACATT 59.934 40.000 0.00 0.00 0.00 2.71
270 271 5.065859 TGCGTTGATGGGTAATTCTACATTG 59.934 40.000 0.00 0.00 0.00 2.82
271 272 5.065988 GCGTTGATGGGTAATTCTACATTGT 59.934 40.000 0.00 0.00 0.00 2.71
272 273 6.715464 CGTTGATGGGTAATTCTACATTGTC 58.285 40.000 0.00 0.00 0.00 3.18
273 274 6.509517 CGTTGATGGGTAATTCTACATTGTCG 60.510 42.308 0.00 0.00 0.00 4.35
274 275 5.364778 TGATGGGTAATTCTACATTGTCGG 58.635 41.667 0.00 0.00 0.00 4.79
276 277 5.168647 TGGGTAATTCTACATTGTCGGTT 57.831 39.130 0.00 0.00 0.00 4.44
277 278 4.938832 TGGGTAATTCTACATTGTCGGTTG 59.061 41.667 0.00 0.00 0.00 3.77
278 279 4.334481 GGGTAATTCTACATTGTCGGTTGG 59.666 45.833 0.00 0.00 0.00 3.77
279 280 4.334481 GGTAATTCTACATTGTCGGTTGGG 59.666 45.833 0.00 0.00 0.00 4.12
280 281 2.483014 TTCTACATTGTCGGTTGGGG 57.517 50.000 0.00 0.00 0.00 4.96
283 284 0.329931 TACATTGTCGGTTGGGGCAT 59.670 50.000 0.00 0.00 0.00 4.40
284 285 1.250154 ACATTGTCGGTTGGGGCATG 61.250 55.000 0.00 0.00 0.00 4.06
286 287 1.250154 ATTGTCGGTTGGGGCATGTG 61.250 55.000 0.00 0.00 0.00 3.21
287 288 2.282180 GTCGGTTGGGGCATGTGT 60.282 61.111 0.00 0.00 0.00 3.72
289 290 2.034066 CGGTTGGGGCATGTGTCT 59.966 61.111 0.00 0.00 0.00 3.41
291 292 1.178534 CGGTTGGGGCATGTGTCTTT 61.179 55.000 0.00 0.00 0.00 2.52
292 293 1.047801 GGTTGGGGCATGTGTCTTTT 58.952 50.000 0.00 0.00 0.00 2.27
293 294 1.270252 GGTTGGGGCATGTGTCTTTTG 60.270 52.381 0.00 0.00 0.00 2.44
294 295 1.686052 GTTGGGGCATGTGTCTTTTGA 59.314 47.619 0.00 0.00 0.00 2.69
295 296 2.299867 GTTGGGGCATGTGTCTTTTGAT 59.700 45.455 0.00 0.00 0.00 2.57
296 297 3.448093 TGGGGCATGTGTCTTTTGATA 57.552 42.857 0.00 0.00 0.00 2.15
299 300 4.018870 TGGGGCATGTGTCTTTTGATACTA 60.019 41.667 0.00 0.00 40.59 1.82
300 301 5.133221 GGGGCATGTGTCTTTTGATACTAT 58.867 41.667 0.00 0.00 40.59 2.12
301 302 5.009010 GGGGCATGTGTCTTTTGATACTATG 59.991 44.000 0.00 0.00 40.59 2.23
303 304 6.488006 GGGCATGTGTCTTTTGATACTATGAT 59.512 38.462 0.00 0.00 40.59 2.45
304 305 7.358066 GGCATGTGTCTTTTGATACTATGATG 58.642 38.462 0.00 0.00 40.59 3.07
305 306 7.227314 GGCATGTGTCTTTTGATACTATGATGA 59.773 37.037 0.00 0.00 40.59 2.92
309 310 9.725019 TGTGTCTTTTGATACTATGATGAAAGT 57.275 29.630 0.00 0.00 40.59 2.66
316 317 9.793259 TTTGATACTATGATGAAAGTATTCCCC 57.207 33.333 0.00 0.00 38.67 4.81
317 318 7.611770 TGATACTATGATGAAAGTATTCCCCG 58.388 38.462 0.00 0.00 38.67 5.73
318 319 7.453439 TGATACTATGATGAAAGTATTCCCCGA 59.547 37.037 0.00 0.00 38.67 5.14
319 320 6.102897 ACTATGATGAAAGTATTCCCCGAG 57.897 41.667 0.00 0.00 34.49 4.63
320 321 3.838244 TGATGAAAGTATTCCCCGAGG 57.162 47.619 0.00 0.00 34.49 4.63
321 322 2.438021 TGATGAAAGTATTCCCCGAGGG 59.562 50.000 0.00 0.00 46.11 4.30
322 323 0.544697 TGAAAGTATTCCCCGAGGGC 59.455 55.000 1.76 0.00 43.94 5.19
326 327 2.112279 AGTATTCCCCGAGGGCATTA 57.888 50.000 1.76 0.00 43.94 1.90
327 328 2.414612 AGTATTCCCCGAGGGCATTAA 58.585 47.619 1.76 0.00 43.94 1.40
328 329 2.105993 AGTATTCCCCGAGGGCATTAAC 59.894 50.000 1.76 0.00 43.94 2.01
329 330 0.923358 ATTCCCCGAGGGCATTAACA 59.077 50.000 1.76 0.00 43.94 2.41
331 332 0.923358 TCCCCGAGGGCATTAACAAT 59.077 50.000 1.76 0.00 43.94 2.71
332 333 1.032014 CCCCGAGGGCATTAACAATG 58.968 55.000 1.76 0.00 41.85 2.82
334 335 1.684869 CCCGAGGGCATTAACAATGGT 60.685 52.381 0.00 0.00 39.31 3.55
335 336 1.405105 CCGAGGGCATTAACAATGGTG 59.595 52.381 1.40 0.00 39.31 4.17
336 337 2.364632 CGAGGGCATTAACAATGGTGA 58.635 47.619 1.40 0.00 39.31 4.02
337 338 2.097466 CGAGGGCATTAACAATGGTGAC 59.903 50.000 1.40 0.00 39.31 3.67
389 2751 7.180408 AGGATGCGGAGTGGTATTACTATAAAT 59.820 37.037 0.00 0.00 0.00 1.40
390 2752 7.822822 GGATGCGGAGTGGTATTACTATAAATT 59.177 37.037 0.00 0.00 0.00 1.82
391 2753 9.865321 GATGCGGAGTGGTATTACTATAAATTA 57.135 33.333 0.00 0.00 0.00 1.40
479 2841 8.112099 TCGATAGTTTACGAAGCAAATCTTAC 57.888 34.615 0.00 0.00 35.62 2.34
485 2847 7.596248 AGTTTACGAAGCAAATCTTACGAGTTA 59.404 33.333 0.00 0.00 34.56 2.24
493 2855 0.174162 TCTTACGAGTTAAGGCGGCC 59.826 55.000 12.11 12.11 38.24 6.13
512 2874 0.669077 CGCGTATGAGCTACCTCCTT 59.331 55.000 0.00 0.00 37.29 3.36
516 2878 2.294791 CGTATGAGCTACCTCCTTCCTG 59.705 54.545 0.00 0.00 37.29 3.86
518 2880 1.853963 TGAGCTACCTCCTTCCTGAC 58.146 55.000 0.00 0.00 37.29 3.51
523 2885 2.093921 GCTACCTCCTTCCTGACAAGAC 60.094 54.545 0.00 0.00 0.00 3.01
529 2891 1.276421 CCTTCCTGACAAGACCACGAT 59.724 52.381 0.00 0.00 0.00 3.73
539 2901 1.657804 AGACCACGATTCCCCTCTTT 58.342 50.000 0.00 0.00 0.00 2.52
544 2906 1.555075 CACGATTCCCCTCTTTCTCCA 59.445 52.381 0.00 0.00 0.00 3.86
548 2910 1.204146 TTCCCCTCTTTCTCCATCCG 58.796 55.000 0.00 0.00 0.00 4.18
556 2918 1.394917 CTTTCTCCATCCGTCGCTTTG 59.605 52.381 0.00 0.00 0.00 2.77
560 2922 0.534873 TCCATCCGTCGCTTTGATGA 59.465 50.000 9.84 0.00 38.49 2.92
561 2923 0.652592 CCATCCGTCGCTTTGATGAC 59.347 55.000 9.84 0.00 38.49 3.06
571 2934 1.743394 GCTTTGATGACGGTAAAGGGG 59.257 52.381 0.00 0.00 33.25 4.79
572 2935 1.743394 CTTTGATGACGGTAAAGGGGC 59.257 52.381 0.00 0.00 0.00 5.80
574 2937 1.523032 GATGACGGTAAAGGGGCGG 60.523 63.158 0.00 0.00 0.00 6.13
594 2957 2.554032 GGAACCCTGTTGTGAGAATGTG 59.446 50.000 0.00 0.00 0.00 3.21
595 2958 3.476552 GAACCCTGTTGTGAGAATGTGA 58.523 45.455 0.00 0.00 0.00 3.58
596 2959 3.576078 ACCCTGTTGTGAGAATGTGAA 57.424 42.857 0.00 0.00 0.00 3.18
597 2960 3.480470 ACCCTGTTGTGAGAATGTGAAG 58.520 45.455 0.00 0.00 0.00 3.02
599 2962 3.251729 CCCTGTTGTGAGAATGTGAAGTG 59.748 47.826 0.00 0.00 0.00 3.16
600 2963 3.251729 CCTGTTGTGAGAATGTGAAGTGG 59.748 47.826 0.00 0.00 0.00 4.00
601 2964 3.879295 CTGTTGTGAGAATGTGAAGTGGT 59.121 43.478 0.00 0.00 0.00 4.16
603 2966 5.620206 TGTTGTGAGAATGTGAAGTGGTAT 58.380 37.500 0.00 0.00 0.00 2.73
604 2967 6.061441 TGTTGTGAGAATGTGAAGTGGTATT 58.939 36.000 0.00 0.00 0.00 1.89
605 2968 6.017192 TGTTGTGAGAATGTGAAGTGGTATTG 60.017 38.462 0.00 0.00 0.00 1.90
606 2969 5.620206 TGTGAGAATGTGAAGTGGTATTGT 58.380 37.500 0.00 0.00 0.00 2.71
607 2970 6.061441 TGTGAGAATGTGAAGTGGTATTGTT 58.939 36.000 0.00 0.00 0.00 2.83
608 2971 6.545666 TGTGAGAATGTGAAGTGGTATTGTTT 59.454 34.615 0.00 0.00 0.00 2.83
609 2972 7.068103 TGTGAGAATGTGAAGTGGTATTGTTTT 59.932 33.333 0.00 0.00 0.00 2.43
610 2973 7.920682 GTGAGAATGTGAAGTGGTATTGTTTTT 59.079 33.333 0.00 0.00 0.00 1.94
666 3911 5.093169 TGTAAATTTTTGCAGCAACATGC 57.907 34.783 7.54 0.00 46.68 4.06
680 3925 5.827568 GCAACATGCGGGATATTATTTTG 57.172 39.130 0.00 0.00 31.71 2.44
681 3926 4.150451 GCAACATGCGGGATATTATTTTGC 59.850 41.667 0.00 0.00 31.71 3.68
682 3927 5.288015 CAACATGCGGGATATTATTTTGCA 58.712 37.500 0.00 0.00 35.10 4.08
683 3928 5.726980 ACATGCGGGATATTATTTTGCAT 57.273 34.783 0.00 0.00 41.83 3.96
684 3929 6.832520 ACATGCGGGATATTATTTTGCATA 57.167 33.333 0.00 0.00 39.36 3.14
685 3930 6.855836 ACATGCGGGATATTATTTTGCATAG 58.144 36.000 0.00 7.41 39.36 2.23
686 3931 6.658816 ACATGCGGGATATTATTTTGCATAGA 59.341 34.615 0.00 0.00 39.36 1.98
687 3932 7.176515 ACATGCGGGATATTATTTTGCATAGAA 59.823 33.333 0.00 0.00 39.36 2.10
688 3933 7.144722 TGCGGGATATTATTTTGCATAGAAG 57.855 36.000 0.00 0.00 0.00 2.85
689 3934 6.939730 TGCGGGATATTATTTTGCATAGAAGA 59.060 34.615 0.00 0.00 0.00 2.87
690 3935 7.446931 TGCGGGATATTATTTTGCATAGAAGAA 59.553 33.333 0.00 0.00 0.00 2.52
691 3936 7.965107 GCGGGATATTATTTTGCATAGAAGAAG 59.035 37.037 0.00 0.00 0.00 2.85
692 3937 9.219603 CGGGATATTATTTTGCATAGAAGAAGA 57.780 33.333 0.00 0.00 0.00 2.87
700 3945 2.979299 GCATAGAAGAAGAATGCGTGC 58.021 47.619 0.00 0.00 36.94 5.34
701 3946 2.598439 GCATAGAAGAAGAATGCGTGCG 60.598 50.000 0.00 0.00 36.94 5.34
702 3947 2.647529 TAGAAGAAGAATGCGTGCGA 57.352 45.000 0.00 0.00 0.00 5.10
703 3948 1.071605 AGAAGAAGAATGCGTGCGAC 58.928 50.000 0.00 0.00 0.00 5.19
704 3949 0.095417 GAAGAAGAATGCGTGCGACC 59.905 55.000 0.00 0.00 0.00 4.79
705 3950 1.298859 AAGAAGAATGCGTGCGACCC 61.299 55.000 0.00 0.00 0.00 4.46
706 3951 1.741770 GAAGAATGCGTGCGACCCT 60.742 57.895 0.00 0.00 0.00 4.34
707 3952 1.696832 GAAGAATGCGTGCGACCCTC 61.697 60.000 0.00 0.00 0.00 4.30
708 3953 3.554692 GAATGCGTGCGACCCTCG 61.555 66.667 0.00 0.00 43.89 4.63
712 3957 4.203076 GCGTGCGACCCTCGGTAT 62.203 66.667 0.00 0.00 40.84 2.73
713 3958 2.837883 GCGTGCGACCCTCGGTATA 61.838 63.158 0.00 0.00 40.84 1.47
714 3959 1.729276 CGTGCGACCCTCGGTATAA 59.271 57.895 0.00 0.00 40.84 0.98
715 3960 0.593263 CGTGCGACCCTCGGTATAAC 60.593 60.000 0.00 0.00 40.84 1.89
716 3961 0.743097 GTGCGACCCTCGGTATAACT 59.257 55.000 0.00 0.00 40.84 2.24
717 3962 0.742505 TGCGACCCTCGGTATAACTG 59.257 55.000 0.00 0.00 40.84 3.16
718 3963 0.031721 GCGACCCTCGGTATAACTGG 59.968 60.000 0.00 0.00 40.84 4.00
719 3964 1.396653 CGACCCTCGGTATAACTGGT 58.603 55.000 0.00 0.00 35.25 4.00
720 3965 1.066605 CGACCCTCGGTATAACTGGTG 59.933 57.143 0.00 0.00 35.25 4.17
721 3966 0.828677 ACCCTCGGTATAACTGGTGC 59.171 55.000 0.00 0.00 32.11 5.01
722 3967 0.106149 CCCTCGGTATAACTGGTGCC 59.894 60.000 0.00 0.00 0.00 5.01
723 3968 1.120530 CCTCGGTATAACTGGTGCCT 58.879 55.000 0.00 0.00 0.00 4.75
724 3969 1.068741 CCTCGGTATAACTGGTGCCTC 59.931 57.143 0.00 0.00 0.00 4.70
725 3970 0.742505 TCGGTATAACTGGTGCCTCG 59.257 55.000 0.00 0.00 0.00 4.63
726 3971 0.249322 CGGTATAACTGGTGCCTCGG 60.249 60.000 0.00 0.00 0.00 4.63
727 3972 0.106149 GGTATAACTGGTGCCTCGGG 59.894 60.000 0.00 0.00 0.00 5.14
737 3982 2.954611 GCCTCGGGCTTTGTGTTC 59.045 61.111 7.58 0.00 46.69 3.18
738 3983 1.600916 GCCTCGGGCTTTGTGTTCT 60.601 57.895 7.58 0.00 46.69 3.01
739 3984 0.321298 GCCTCGGGCTTTGTGTTCTA 60.321 55.000 7.58 0.00 46.69 2.10
740 3985 1.439679 CCTCGGGCTTTGTGTTCTAC 58.560 55.000 0.00 0.00 0.00 2.59
741 3986 1.002087 CCTCGGGCTTTGTGTTCTACT 59.998 52.381 0.00 0.00 0.00 2.57
742 3987 2.550208 CCTCGGGCTTTGTGTTCTACTT 60.550 50.000 0.00 0.00 0.00 2.24
743 3988 2.737252 CTCGGGCTTTGTGTTCTACTTC 59.263 50.000 0.00 0.00 0.00 3.01
744 3989 2.103432 TCGGGCTTTGTGTTCTACTTCA 59.897 45.455 0.00 0.00 0.00 3.02
745 3990 3.074412 CGGGCTTTGTGTTCTACTTCAT 58.926 45.455 0.00 0.00 0.00 2.57
746 3991 3.125316 CGGGCTTTGTGTTCTACTTCATC 59.875 47.826 0.00 0.00 0.00 2.92
747 3992 3.440522 GGGCTTTGTGTTCTACTTCATCC 59.559 47.826 0.00 0.00 0.00 3.51
748 3993 4.072131 GGCTTTGTGTTCTACTTCATCCA 58.928 43.478 0.00 0.00 0.00 3.41
749 3994 4.702131 GGCTTTGTGTTCTACTTCATCCAT 59.298 41.667 0.00 0.00 0.00 3.41
750 3995 5.183904 GGCTTTGTGTTCTACTTCATCCATT 59.816 40.000 0.00 0.00 0.00 3.16
751 3996 6.294731 GGCTTTGTGTTCTACTTCATCCATTT 60.295 38.462 0.00 0.00 0.00 2.32
752 3997 6.803807 GCTTTGTGTTCTACTTCATCCATTTC 59.196 38.462 0.00 0.00 0.00 2.17
753 3998 7.308830 GCTTTGTGTTCTACTTCATCCATTTCT 60.309 37.037 0.00 0.00 0.00 2.52
754 3999 9.219603 CTTTGTGTTCTACTTCATCCATTTCTA 57.780 33.333 0.00 0.00 0.00 2.10
755 4000 9.739276 TTTGTGTTCTACTTCATCCATTTCTAT 57.261 29.630 0.00 0.00 0.00 1.98
757 4002 9.817809 TGTGTTCTACTTCATCCATTTCTATAC 57.182 33.333 0.00 0.00 0.00 1.47
758 4003 9.817809 GTGTTCTACTTCATCCATTTCTATACA 57.182 33.333 0.00 0.00 0.00 2.29
768 4013 9.919416 TCATCCATTTCTATACAAATCTTTCCA 57.081 29.630 0.00 0.00 0.00 3.53
771 4016 9.618890 TCCATTTCTATACAAATCTTTCCAGAG 57.381 33.333 0.00 0.00 30.36 3.35
772 4017 9.618890 CCATTTCTATACAAATCTTTCCAGAGA 57.381 33.333 0.00 0.00 30.36 3.10
776 4021 9.838339 TTCTATACAAATCTTTCCAGAGATTCC 57.162 33.333 1.05 0.00 43.66 3.01
777 4022 8.992349 TCTATACAAATCTTTCCAGAGATTCCA 58.008 33.333 1.05 0.00 43.66 3.53
778 4023 9.618890 CTATACAAATCTTTCCAGAGATTCCAA 57.381 33.333 1.05 0.00 43.66 3.53
782 4027 8.910944 ACAAATCTTTCCAGAGATTCCAATATG 58.089 33.333 1.05 0.00 43.66 1.78
783 4028 8.358148 CAAATCTTTCCAGAGATTCCAATATGG 58.642 37.037 1.05 0.00 43.66 2.74
784 4029 6.829985 TCTTTCCAGAGATTCCAATATGGA 57.170 37.500 0.00 0.00 46.61 3.41
785 4030 7.230027 ATCTTTCCAGAGATTCCAATATGGAC 58.770 38.462 0.00 0.00 38.30 4.02
786 4031 7.073470 ATCTTTCCAGAGATTCCAATATGGACT 59.927 37.037 0.00 0.00 38.30 3.85
799 4044 8.107399 TCCAATATGGACTACTTCTACATACG 57.893 38.462 0.00 0.00 42.67 3.06
800 4045 7.722728 TCCAATATGGACTACTTCTACATACGT 59.277 37.037 0.00 0.00 42.67 3.57
801 4046 9.006839 CCAATATGGACTACTTCTACATACGTA 57.993 37.037 0.00 0.00 40.96 3.57
803 4048 5.998454 TGGACTACTTCTACATACGTAGC 57.002 43.478 0.08 0.00 44.17 3.58
804 4049 5.430886 TGGACTACTTCTACATACGTAGCA 58.569 41.667 0.08 0.00 44.17 3.49
805 4050 5.882000 TGGACTACTTCTACATACGTAGCAA 59.118 40.000 0.08 0.00 44.17 3.91
806 4051 6.375174 TGGACTACTTCTACATACGTAGCAAA 59.625 38.462 0.08 0.00 44.17 3.68
807 4052 7.094248 TGGACTACTTCTACATACGTAGCAAAA 60.094 37.037 0.08 0.00 44.17 2.44
808 4053 7.919621 GGACTACTTCTACATACGTAGCAAAAT 59.080 37.037 0.08 0.00 44.17 1.82
809 4054 8.630278 ACTACTTCTACATACGTAGCAAAATG 57.370 34.615 0.08 0.00 44.17 2.32
810 4055 8.464404 ACTACTTCTACATACGTAGCAAAATGA 58.536 33.333 0.08 0.00 44.17 2.57
811 4056 9.464714 CTACTTCTACATACGTAGCAAAATGAT 57.535 33.333 0.08 0.00 44.17 2.45
813 4058 9.464714 ACTTCTACATACGTAGCAAAATGATAG 57.535 33.333 0.08 0.48 44.17 2.08
814 4059 9.678941 CTTCTACATACGTAGCAAAATGATAGA 57.321 33.333 0.08 2.60 44.17 1.98
822 4067 8.354011 ACGTAGCAAAATGATAGAATCTACAC 57.646 34.615 0.00 0.00 0.00 2.90
823 4068 8.198109 ACGTAGCAAAATGATAGAATCTACACT 58.802 33.333 0.00 0.00 0.00 3.55
824 4069 8.695284 CGTAGCAAAATGATAGAATCTACACTC 58.305 37.037 0.00 0.00 0.00 3.51
825 4070 9.757227 GTAGCAAAATGATAGAATCTACACTCT 57.243 33.333 0.00 0.00 0.00 3.24
943 4188 2.140717 ACCACGAAACTTTGATCGGAC 58.859 47.619 0.00 0.00 43.11 4.79
946 4191 0.094730 CGAAACTTTGATCGGACGGC 59.905 55.000 0.00 0.00 35.49 5.68
989 4237 0.246374 CGAACAATTCGCACGAGTCG 60.246 55.000 11.85 11.85 46.97 4.18
990 4238 1.057636 GAACAATTCGCACGAGTCGA 58.942 50.000 21.50 0.00 0.00 4.20
1115 4363 3.550992 CGTACACGCCCACATCGC 61.551 66.667 0.00 0.00 0.00 4.58
1162 4410 3.573772 CTCCGCAACACGCTCCTCA 62.574 63.158 0.00 0.00 41.76 3.86
1165 4413 2.031163 GCAACACGCTCCTCACCT 59.969 61.111 0.00 0.00 37.77 4.00
1346 5272 2.252260 CGACCGGTTCACGTACGT 59.748 61.111 16.72 16.72 42.24 3.57
1572 5499 3.914605 CTCTGGCTACGTGCGTGCA 62.915 63.158 7.55 0.00 44.05 4.57
1578 5505 4.293648 TACGTGCGTGCAGGTGCT 62.294 61.111 25.39 6.01 43.60 4.40
1581 5508 3.720193 GTGCGTGCAGGTGCTCAG 61.720 66.667 8.40 0.00 42.66 3.35
1617 5544 3.126879 TTTGCTCTGATGCGCCGG 61.127 61.111 4.18 0.00 35.36 6.13
1659 5586 2.084610 TCGCTCTTGGAAGTGTCATG 57.915 50.000 0.00 0.00 0.00 3.07
1687 5614 1.449246 GCTGGCAGCGATGACTCTT 60.449 57.895 25.47 0.00 0.00 2.85
1706 5633 1.978455 TTGAGGGATATTGCCGCGGT 61.978 55.000 28.70 9.89 28.42 5.68
1719 5646 1.745115 CGCGGTGGTTCATGGATGT 60.745 57.895 0.00 0.00 0.00 3.06
1746 5673 2.670148 GGCTGGGTTGGACTCCGAT 61.670 63.158 0.00 0.00 0.00 4.18
1920 5847 2.266554 GATGTCCTGAGAGAAGCGTTG 58.733 52.381 0.00 0.00 0.00 4.10
1995 5922 1.561730 CAGCATCATACGAGCGTGC 59.438 57.895 5.69 0.01 36.11 5.34
2065 5992 2.892852 CTGAAGCATTGTTTCCAGGGAA 59.107 45.455 10.28 0.00 0.00 3.97
2133 6060 4.042187 GGCTATATGGAAGATGGGTTCAGT 59.958 45.833 0.00 0.00 0.00 3.41
2168 6095 1.204704 TCCGAAGCAAGATGTCGTCAT 59.795 47.619 0.00 0.00 36.95 3.06
2173 6100 0.729116 GCAAGATGTCGTCATGTGGG 59.271 55.000 0.00 0.00 34.06 4.61
2214 6141 5.514914 GTGTGTTCAAAATGAGCTTTTCGAA 59.485 36.000 0.00 0.00 34.80 3.71
2858 6804 5.585390 CATTGAGTCCAACCATAAAGCATC 58.415 41.667 0.00 0.00 34.72 3.91
3094 7045 1.377690 TTTACCTGGATGCTGGGGAA 58.622 50.000 14.59 5.51 0.00 3.97
3253 8585 5.049198 CACAATATATGCGAAACTGGCAGAT 60.049 40.000 23.66 6.45 44.71 2.90
3349 8686 3.262405 AGCAAAGTTGGATGAATTGGCAT 59.738 39.130 0.00 0.00 0.00 4.40
3565 8914 3.243434 CGGATTACTGGTAGTGGCTACTG 60.243 52.174 13.76 0.00 37.78 2.74
3567 8917 2.913603 TACTGGTAGTGGCTACTGGT 57.086 50.000 13.76 8.73 37.78 4.00
3569 8919 1.623811 ACTGGTAGTGGCTACTGGTTG 59.376 52.381 13.76 3.52 37.78 3.77
3673 9042 6.963049 AAAATCATTTTTCAGCAGATGAGC 57.037 33.333 0.00 0.00 39.68 4.26
3674 9043 5.654603 AATCATTTTTCAGCAGATGAGCA 57.345 34.783 0.00 0.00 39.68 4.26
3675 9044 4.696899 TCATTTTTCAGCAGATGAGCAG 57.303 40.909 0.00 0.00 39.68 4.24
3676 9045 4.329392 TCATTTTTCAGCAGATGAGCAGA 58.671 39.130 0.00 0.00 39.68 4.26
3821 9195 8.627208 AGGATTAAAATCTGTAGGTGCATATG 57.373 34.615 0.00 0.00 35.73 1.78
3842 9216 4.265893 TGGTAGCCTTGCGATGATTTAAA 58.734 39.130 0.00 0.00 0.00 1.52
3856 9231 9.103048 GCGATGATTTAAACCTATTACATTTCG 57.897 33.333 0.00 0.00 0.00 3.46
4010 9416 4.197750 CAGAAGACCAGGATCTCCAATTG 58.802 47.826 0.00 0.00 38.89 2.32
4019 9425 4.820716 CAGGATCTCCAATTGGAAGACATC 59.179 45.833 26.87 21.90 44.91 3.06
4029 9435 2.880963 GGAAGACATCCTCTCCTTCG 57.119 55.000 0.00 0.00 45.56 3.79
4175 9581 0.249238 GCAGCTCATCACCTCGTAGG 60.249 60.000 0.00 0.03 42.49 3.18
4195 9601 2.185387 GTACTCACCTGGGCCTCTTAA 58.815 52.381 4.53 0.00 0.00 1.85
4266 9673 2.547211 AGATCGCTTATGTGCAATCTGC 59.453 45.455 0.00 0.00 45.29 4.26
4311 9719 7.807977 AAAGTATGCTATACATGGTTTGAGG 57.192 36.000 0.00 0.00 40.06 3.86
4386 9794 3.063588 GGAAGCATTACCTTCAGTTACGC 59.936 47.826 4.54 0.00 42.31 4.42
4388 9796 3.873910 AGCATTACCTTCAGTTACGCAT 58.126 40.909 0.00 0.00 0.00 4.73
4421 9829 7.642669 CCTTGCCATGTTTATACTTCACTATG 58.357 38.462 0.00 0.00 0.00 2.23
4423 9831 5.236263 TGCCATGTTTATACTTCACTATGCG 59.764 40.000 0.00 0.00 0.00 4.73
4434 9842 4.455533 ACTTCACTATGCGATTTTGCTCAA 59.544 37.500 0.00 0.00 35.36 3.02
4455 9863 7.642978 GCTCAAGATCATGTCATTATTGTGTTC 59.357 37.037 0.00 0.00 0.00 3.18
4473 9884 4.094294 GTGTTCGTTATTGCTAATGCCTGA 59.906 41.667 0.00 0.00 38.71 3.86
4489 9900 1.205417 CCTGAACATTTGGATGGGCAC 59.795 52.381 0.00 0.00 37.60 5.01
4490 9901 0.887247 TGAACATTTGGATGGGCACG 59.113 50.000 0.00 0.00 37.60 5.34
4516 9927 4.276678 CCATAACCATGTGCCAGTTATCTG 59.723 45.833 2.44 0.00 35.12 2.90
4542 9953 7.179410 GGTTTGCTAATTGTTTCACAGTTTTG 58.821 34.615 0.00 0.00 30.51 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.494893 TGATTGGAGTGCATTTAACTACAC 57.505 37.500 0.00 0.00 38.23 2.90
1 2 7.517614 TTTGATTGGAGTGCATTTAACTACA 57.482 32.000 0.00 0.00 36.69 2.74
2 3 8.986477 AATTTGATTGGAGTGCATTTAACTAC 57.014 30.769 0.00 0.00 0.00 2.73
4 5 8.584157 TGTAATTTGATTGGAGTGCATTTAACT 58.416 29.630 0.00 0.00 0.00 2.24
5 6 8.755696 TGTAATTTGATTGGAGTGCATTTAAC 57.244 30.769 0.00 0.00 0.00 2.01
6 7 9.941325 AATGTAATTTGATTGGAGTGCATTTAA 57.059 25.926 0.00 0.00 26.74 1.52
10 11 9.139734 AGATAATGTAATTTGATTGGAGTGCAT 57.860 29.630 0.00 0.00 37.87 3.96
11 12 8.523915 AGATAATGTAATTTGATTGGAGTGCA 57.476 30.769 0.00 0.00 37.87 4.57
12 13 8.078596 GGAGATAATGTAATTTGATTGGAGTGC 58.921 37.037 0.00 0.00 37.87 4.40
13 14 8.285394 CGGAGATAATGTAATTTGATTGGAGTG 58.715 37.037 0.00 0.00 37.87 3.51
14 15 7.445402 CCGGAGATAATGTAATTTGATTGGAGT 59.555 37.037 0.00 0.00 37.87 3.85
15 16 7.445402 ACCGGAGATAATGTAATTTGATTGGAG 59.555 37.037 9.46 0.00 37.87 3.86
16 17 7.287061 ACCGGAGATAATGTAATTTGATTGGA 58.713 34.615 9.46 0.00 37.87 3.53
17 18 7.510549 ACCGGAGATAATGTAATTTGATTGG 57.489 36.000 9.46 0.00 37.87 3.16
18 19 9.801873 AAAACCGGAGATAATGTAATTTGATTG 57.198 29.630 9.46 0.00 37.87 2.67
27 28 9.715121 GGAACATATAAAACCGGAGATAATGTA 57.285 33.333 9.46 0.00 0.00 2.29
28 29 7.664318 GGGAACATATAAAACCGGAGATAATGT 59.336 37.037 9.46 7.85 0.00 2.71
29 30 7.883311 AGGGAACATATAAAACCGGAGATAATG 59.117 37.037 9.46 7.17 0.00 1.90
30 31 7.985589 AGGGAACATATAAAACCGGAGATAAT 58.014 34.615 9.46 0.00 0.00 1.28
31 32 7.383156 AGGGAACATATAAAACCGGAGATAA 57.617 36.000 9.46 0.00 0.00 1.75
32 33 6.013984 GGAGGGAACATATAAAACCGGAGATA 60.014 42.308 9.46 0.00 0.00 1.98
33 34 5.221864 GGAGGGAACATATAAAACCGGAGAT 60.222 44.000 9.46 0.00 0.00 2.75
34 35 4.102054 GGAGGGAACATATAAAACCGGAGA 59.898 45.833 9.46 0.00 0.00 3.71
35 36 4.102681 AGGAGGGAACATATAAAACCGGAG 59.897 45.833 9.46 0.00 0.00 4.63
36 37 4.042174 AGGAGGGAACATATAAAACCGGA 58.958 43.478 9.46 0.00 0.00 5.14
38 39 6.376018 TGAAAAGGAGGGAACATATAAAACCG 59.624 38.462 0.00 0.00 0.00 4.44
39 40 7.712204 TGAAAAGGAGGGAACATATAAAACC 57.288 36.000 0.00 0.00 0.00 3.27
46 47 8.950007 AGTTAAATTGAAAAGGAGGGAACATA 57.050 30.769 0.00 0.00 0.00 2.29
48 49 7.418483 CCAAGTTAAATTGAAAAGGAGGGAACA 60.418 37.037 16.81 0.00 31.55 3.18
53 54 7.014230 TGAGACCAAGTTAAATTGAAAAGGAGG 59.986 37.037 16.81 0.39 31.55 4.30
55 56 7.889873 TGAGACCAAGTTAAATTGAAAAGGA 57.110 32.000 16.81 0.00 31.55 3.36
59 60 9.691362 GCTTATTGAGACCAAGTTAAATTGAAA 57.309 29.630 16.81 4.23 35.48 2.69
60 61 9.077885 AGCTTATTGAGACCAAGTTAAATTGAA 57.922 29.630 16.81 3.48 35.48 2.69
61 62 8.635765 AGCTTATTGAGACCAAGTTAAATTGA 57.364 30.769 16.81 0.00 35.48 2.57
62 63 8.734386 AGAGCTTATTGAGACCAAGTTAAATTG 58.266 33.333 8.65 8.65 35.48 2.32
64 65 8.870075 AAGAGCTTATTGAGACCAAGTTAAAT 57.130 30.769 0.00 0.00 35.48 1.40
65 66 8.567948 CAAAGAGCTTATTGAGACCAAGTTAAA 58.432 33.333 6.59 0.00 35.48 1.52
66 67 7.174946 CCAAAGAGCTTATTGAGACCAAGTTAA 59.825 37.037 12.51 0.00 35.48 2.01
67 68 6.655003 CCAAAGAGCTTATTGAGACCAAGTTA 59.345 38.462 12.51 0.00 35.48 2.24
68 69 5.474876 CCAAAGAGCTTATTGAGACCAAGTT 59.525 40.000 12.51 0.00 35.48 2.66
69 70 5.006386 CCAAAGAGCTTATTGAGACCAAGT 58.994 41.667 12.51 0.00 35.48 3.16
70 71 5.006386 ACCAAAGAGCTTATTGAGACCAAG 58.994 41.667 12.51 0.00 35.48 3.61
72 73 4.640771 ACCAAAGAGCTTATTGAGACCA 57.359 40.909 12.51 0.00 0.00 4.02
77 78 6.003326 TGTGATGAACCAAAGAGCTTATTGA 58.997 36.000 12.51 0.00 0.00 2.57
79 80 6.127535 CCATGTGATGAACCAAAGAGCTTATT 60.128 38.462 0.00 0.00 0.00 1.40
81 82 4.701651 CCATGTGATGAACCAAAGAGCTTA 59.298 41.667 0.00 0.00 0.00 3.09
82 83 3.508793 CCATGTGATGAACCAAAGAGCTT 59.491 43.478 0.00 0.00 0.00 3.74
83 84 3.087031 CCATGTGATGAACCAAAGAGCT 58.913 45.455 0.00 0.00 0.00 4.09
84 85 3.084039 TCCATGTGATGAACCAAAGAGC 58.916 45.455 0.00 0.00 0.00 4.09
85 86 5.184479 ACAATCCATGTGATGAACCAAAGAG 59.816 40.000 0.00 0.00 41.93 2.85
86 87 5.078949 ACAATCCATGTGATGAACCAAAGA 58.921 37.500 0.00 0.00 41.93 2.52
87 88 5.395682 ACAATCCATGTGATGAACCAAAG 57.604 39.130 0.00 0.00 41.93 2.77
88 89 4.082841 CGACAATCCATGTGATGAACCAAA 60.083 41.667 0.00 0.00 44.12 3.28
89 90 3.439825 CGACAATCCATGTGATGAACCAA 59.560 43.478 0.00 0.00 44.12 3.67
90 91 3.009026 CGACAATCCATGTGATGAACCA 58.991 45.455 0.00 0.00 44.12 3.67
91 92 3.270027 TCGACAATCCATGTGATGAACC 58.730 45.455 0.00 0.00 44.12 3.62
92 93 3.935203 ACTCGACAATCCATGTGATGAAC 59.065 43.478 0.00 0.00 44.12 3.18
95 96 3.790091 AGACTCGACAATCCATGTGATG 58.210 45.455 0.00 0.00 44.12 3.07
96 97 3.703556 AGAGACTCGACAATCCATGTGAT 59.296 43.478 0.00 0.00 44.12 3.06
97 98 3.092301 AGAGACTCGACAATCCATGTGA 58.908 45.455 0.00 0.00 44.12 3.58
98 99 3.130164 AGAGAGACTCGACAATCCATGTG 59.870 47.826 0.00 0.00 44.12 3.21
99 100 3.380004 GAGAGAGACTCGACAATCCATGT 59.620 47.826 0.00 0.00 39.44 3.21
100 101 3.963665 GAGAGAGACTCGACAATCCATG 58.036 50.000 0.00 0.00 35.84 3.66
117 118 5.915857 TCAAACAATTTTCACGATCGAGAG 58.084 37.500 24.34 11.23 0.00 3.20
118 119 5.915812 TCAAACAATTTTCACGATCGAGA 57.084 34.783 24.34 17.56 0.00 4.04
119 120 6.537566 AGATCAAACAATTTTCACGATCGAG 58.462 36.000 24.34 15.06 31.48 4.04
121 122 6.901887 CCTAGATCAAACAATTTTCACGATCG 59.098 38.462 14.88 14.88 31.48 3.69
122 123 7.974675 TCCTAGATCAAACAATTTTCACGATC 58.025 34.615 0.00 0.00 0.00 3.69
123 124 7.824289 TCTCCTAGATCAAACAATTTTCACGAT 59.176 33.333 0.00 0.00 0.00 3.73
124 125 7.158697 TCTCCTAGATCAAACAATTTTCACGA 58.841 34.615 0.00 0.00 0.00 4.35
125 126 7.331934 TCTCTCCTAGATCAAACAATTTTCACG 59.668 37.037 0.00 0.00 0.00 4.35
126 127 8.447053 GTCTCTCCTAGATCAAACAATTTTCAC 58.553 37.037 0.00 0.00 36.36 3.18
127 128 8.156820 TGTCTCTCCTAGATCAAACAATTTTCA 58.843 33.333 0.00 0.00 36.36 2.69
128 129 8.553459 TGTCTCTCCTAGATCAAACAATTTTC 57.447 34.615 0.00 0.00 36.36 2.29
130 131 7.821846 GTCTGTCTCTCCTAGATCAAACAATTT 59.178 37.037 0.00 0.00 36.36 1.82
131 132 7.180051 AGTCTGTCTCTCCTAGATCAAACAATT 59.820 37.037 0.00 0.00 36.36 2.32
132 133 6.667414 AGTCTGTCTCTCCTAGATCAAACAAT 59.333 38.462 0.00 0.00 36.36 2.71
133 134 6.013379 AGTCTGTCTCTCCTAGATCAAACAA 58.987 40.000 0.00 0.00 36.36 2.83
136 137 4.952957 CCAGTCTGTCTCTCCTAGATCAAA 59.047 45.833 0.00 0.00 36.36 2.69
137 138 4.228438 TCCAGTCTGTCTCTCCTAGATCAA 59.772 45.833 0.00 0.00 36.36 2.57
138 139 3.783082 TCCAGTCTGTCTCTCCTAGATCA 59.217 47.826 0.00 0.00 36.36 2.92
139 140 4.431416 TCCAGTCTGTCTCTCCTAGATC 57.569 50.000 0.00 0.00 36.36 2.75
140 141 4.871871 TTCCAGTCTGTCTCTCCTAGAT 57.128 45.455 0.00 0.00 36.36 1.98
142 143 4.594970 TCTTTCCAGTCTGTCTCTCCTAG 58.405 47.826 0.00 0.00 0.00 3.02
143 144 4.289934 TCTCTTTCCAGTCTGTCTCTCCTA 59.710 45.833 0.00 0.00 0.00 2.94
144 145 3.075283 TCTCTTTCCAGTCTGTCTCTCCT 59.925 47.826 0.00 0.00 0.00 3.69
145 146 3.192633 GTCTCTTTCCAGTCTGTCTCTCC 59.807 52.174 0.00 0.00 0.00 3.71
146 147 4.079253 AGTCTCTTTCCAGTCTGTCTCTC 58.921 47.826 0.00 0.00 0.00 3.20
147 148 4.112634 AGTCTCTTTCCAGTCTGTCTCT 57.887 45.455 0.00 0.00 0.00 3.10
148 149 4.555262 CAAGTCTCTTTCCAGTCTGTCTC 58.445 47.826 0.00 0.00 0.00 3.36
149 150 3.323403 CCAAGTCTCTTTCCAGTCTGTCT 59.677 47.826 0.00 0.00 0.00 3.41
150 151 3.322254 TCCAAGTCTCTTTCCAGTCTGTC 59.678 47.826 0.00 0.00 0.00 3.51
153 154 4.263243 CCAATCCAAGTCTCTTTCCAGTCT 60.263 45.833 0.00 0.00 0.00 3.24
155 156 3.812167 GCCAATCCAAGTCTCTTTCCAGT 60.812 47.826 0.00 0.00 0.00 4.00
157 158 2.108075 TGCCAATCCAAGTCTCTTTCCA 59.892 45.455 0.00 0.00 0.00 3.53
158 159 2.795329 TGCCAATCCAAGTCTCTTTCC 58.205 47.619 0.00 0.00 0.00 3.13
159 160 4.012374 TGATGCCAATCCAAGTCTCTTTC 58.988 43.478 0.00 0.00 31.15 2.62
160 161 4.015084 CTGATGCCAATCCAAGTCTCTTT 58.985 43.478 0.00 0.00 31.15 2.52
161 162 3.618351 CTGATGCCAATCCAAGTCTCTT 58.382 45.455 0.00 0.00 31.15 2.85
164 165 1.684248 GCCTGATGCCAATCCAAGTCT 60.684 52.381 0.00 0.00 31.15 3.24
165 166 0.743097 GCCTGATGCCAATCCAAGTC 59.257 55.000 0.00 0.00 31.15 3.01
166 167 0.040058 TGCCTGATGCCAATCCAAGT 59.960 50.000 0.00 0.00 40.16 3.16
167 168 1.410004 ATGCCTGATGCCAATCCAAG 58.590 50.000 0.00 0.00 40.16 3.61
168 169 2.752075 TATGCCTGATGCCAATCCAA 57.248 45.000 0.00 0.00 40.16 3.53
169 170 2.752075 TTATGCCTGATGCCAATCCA 57.248 45.000 0.00 0.00 40.16 3.41
170 171 2.232941 CCATTATGCCTGATGCCAATCC 59.767 50.000 0.00 0.00 40.16 3.01
171 172 2.232941 CCCATTATGCCTGATGCCAATC 59.767 50.000 0.00 0.00 40.16 2.67
172 173 2.253610 CCCATTATGCCTGATGCCAAT 58.746 47.619 0.00 0.00 40.16 3.16
174 175 0.828762 GCCCATTATGCCTGATGCCA 60.829 55.000 0.00 0.00 40.16 4.92
176 177 2.205022 TAGCCCATTATGCCTGATGC 57.795 50.000 0.00 0.00 41.77 3.91
177 178 6.363065 AGATTATAGCCCATTATGCCTGATG 58.637 40.000 0.00 0.00 0.00 3.07
178 179 6.587560 AGATTATAGCCCATTATGCCTGAT 57.412 37.500 0.00 0.00 0.00 2.90
179 180 6.182627 CAAGATTATAGCCCATTATGCCTGA 58.817 40.000 0.00 0.00 0.00 3.86
180 181 5.359009 CCAAGATTATAGCCCATTATGCCTG 59.641 44.000 0.00 0.00 0.00 4.85
181 182 5.253798 TCCAAGATTATAGCCCATTATGCCT 59.746 40.000 0.00 0.00 0.00 4.75
182 183 5.358160 GTCCAAGATTATAGCCCATTATGCC 59.642 44.000 0.00 0.00 0.00 4.40
183 184 6.094603 CAGTCCAAGATTATAGCCCATTATGC 59.905 42.308 0.00 0.00 0.00 3.14
186 187 7.387265 TTCAGTCCAAGATTATAGCCCATTA 57.613 36.000 0.00 0.00 0.00 1.90
187 188 5.912149 TCAGTCCAAGATTATAGCCCATT 57.088 39.130 0.00 0.00 0.00 3.16
189 190 5.437060 GTTTCAGTCCAAGATTATAGCCCA 58.563 41.667 0.00 0.00 0.00 5.36
191 192 4.024809 GCGTTTCAGTCCAAGATTATAGCC 60.025 45.833 0.00 0.00 0.00 3.93
192 193 4.570772 TGCGTTTCAGTCCAAGATTATAGC 59.429 41.667 0.00 0.00 0.00 2.97
193 194 6.662414 TTGCGTTTCAGTCCAAGATTATAG 57.338 37.500 0.00 0.00 0.00 1.31
194 195 6.038161 CCATTGCGTTTCAGTCCAAGATTATA 59.962 38.462 0.00 0.00 0.00 0.98
195 196 5.163622 CCATTGCGTTTCAGTCCAAGATTAT 60.164 40.000 0.00 0.00 0.00 1.28
196 197 4.155826 CCATTGCGTTTCAGTCCAAGATTA 59.844 41.667 0.00 0.00 0.00 1.75
197 198 3.057315 CCATTGCGTTTCAGTCCAAGATT 60.057 43.478 0.00 0.00 0.00 2.40
198 199 2.489329 CCATTGCGTTTCAGTCCAAGAT 59.511 45.455 0.00 0.00 0.00 2.40
199 200 1.879380 CCATTGCGTTTCAGTCCAAGA 59.121 47.619 0.00 0.00 0.00 3.02
201 202 1.974265 TCCATTGCGTTTCAGTCCAA 58.026 45.000 0.00 0.00 0.00 3.53
202 203 1.811965 CATCCATTGCGTTTCAGTCCA 59.188 47.619 0.00 0.00 0.00 4.02
205 206 2.159338 GCATCATCCATTGCGTTTCAGT 60.159 45.455 0.00 0.00 0.00 3.41
206 207 2.159352 TGCATCATCCATTGCGTTTCAG 60.159 45.455 0.00 0.00 41.80 3.02
207 208 1.817447 TGCATCATCCATTGCGTTTCA 59.183 42.857 0.00 0.00 41.80 2.69
208 209 2.159338 ACTGCATCATCCATTGCGTTTC 60.159 45.455 0.00 0.00 41.80 2.78
209 210 1.820519 ACTGCATCATCCATTGCGTTT 59.179 42.857 0.00 0.00 41.80 3.60
210 211 1.402968 GACTGCATCATCCATTGCGTT 59.597 47.619 0.00 0.00 41.80 4.84
211 212 1.019673 GACTGCATCATCCATTGCGT 58.980 50.000 0.00 0.00 41.80 5.24
212 213 1.002792 CAGACTGCATCATCCATTGCG 60.003 52.381 0.00 0.00 41.80 4.85
213 214 1.269102 GCAGACTGCATCATCCATTGC 60.269 52.381 22.62 0.00 44.26 3.56
214 215 2.776312 GCAGACTGCATCATCCATTG 57.224 50.000 22.62 0.00 44.26 2.82
235 236 0.314618 ATCAACGCACTGCAATGCAA 59.685 45.000 21.31 2.39 46.47 4.08
236 237 0.387494 CATCAACGCACTGCAATGCA 60.387 50.000 21.31 7.99 46.47 3.96
237 238 1.074319 CCATCAACGCACTGCAATGC 61.074 55.000 10.75 10.75 42.48 3.56
238 239 0.457166 CCCATCAACGCACTGCAATG 60.457 55.000 1.11 0.00 0.00 2.82
239 240 0.895100 ACCCATCAACGCACTGCAAT 60.895 50.000 1.11 0.00 0.00 3.56
240 241 0.250510 TACCCATCAACGCACTGCAA 60.251 50.000 1.11 0.00 0.00 4.08
241 242 0.250510 TTACCCATCAACGCACTGCA 60.251 50.000 1.11 0.00 0.00 4.41
243 244 3.009723 AGAATTACCCATCAACGCACTG 58.990 45.455 0.00 0.00 0.00 3.66
245 246 3.936453 TGTAGAATTACCCATCAACGCAC 59.064 43.478 0.00 0.00 0.00 5.34
246 247 4.209307 TGTAGAATTACCCATCAACGCA 57.791 40.909 0.00 0.00 0.00 5.24
247 248 5.065988 ACAATGTAGAATTACCCATCAACGC 59.934 40.000 0.00 0.00 0.00 4.84
249 250 6.238374 CCGACAATGTAGAATTACCCATCAAC 60.238 42.308 0.00 0.00 0.00 3.18
250 251 5.820423 CCGACAATGTAGAATTACCCATCAA 59.180 40.000 0.00 0.00 0.00 2.57
252 253 5.365619 ACCGACAATGTAGAATTACCCATC 58.634 41.667 0.00 0.00 0.00 3.51
253 254 5.367945 ACCGACAATGTAGAATTACCCAT 57.632 39.130 0.00 0.00 0.00 4.00
254 255 4.829872 ACCGACAATGTAGAATTACCCA 57.170 40.909 0.00 0.00 0.00 4.51
255 256 4.334481 CCAACCGACAATGTAGAATTACCC 59.666 45.833 0.00 0.00 0.00 3.69
257 258 4.334481 CCCCAACCGACAATGTAGAATTAC 59.666 45.833 0.00 0.00 0.00 1.89
259 260 3.352648 CCCCAACCGACAATGTAGAATT 58.647 45.455 0.00 0.00 0.00 2.17
260 261 2.944094 GCCCCAACCGACAATGTAGAAT 60.944 50.000 0.00 0.00 0.00 2.40
262 263 0.035820 GCCCCAACCGACAATGTAGA 60.036 55.000 0.00 0.00 0.00 2.59
265 266 1.076549 ATGCCCCAACCGACAATGT 59.923 52.632 0.00 0.00 0.00 2.71
266 267 1.250154 ACATGCCCCAACCGACAATG 61.250 55.000 0.00 0.00 0.00 2.82
267 268 1.076549 ACATGCCCCAACCGACAAT 59.923 52.632 0.00 0.00 0.00 2.71
268 269 1.900981 CACATGCCCCAACCGACAA 60.901 57.895 0.00 0.00 0.00 3.18
269 270 2.282110 CACATGCCCCAACCGACA 60.282 61.111 0.00 0.00 0.00 4.35
270 271 2.282180 ACACATGCCCCAACCGAC 60.282 61.111 0.00 0.00 0.00 4.79
271 272 2.033448 GACACATGCCCCAACCGA 59.967 61.111 0.00 0.00 0.00 4.69
272 273 1.178534 AAAGACACATGCCCCAACCG 61.179 55.000 0.00 0.00 0.00 4.44
273 274 1.047801 AAAAGACACATGCCCCAACC 58.952 50.000 0.00 0.00 0.00 3.77
274 275 1.686052 TCAAAAGACACATGCCCCAAC 59.314 47.619 0.00 0.00 0.00 3.77
276 277 2.307496 ATCAAAAGACACATGCCCCA 57.693 45.000 0.00 0.00 0.00 4.96
277 278 3.356290 AGTATCAAAAGACACATGCCCC 58.644 45.455 0.00 0.00 0.00 5.80
278 279 5.822519 TCATAGTATCAAAAGACACATGCCC 59.177 40.000 0.00 0.00 0.00 5.36
279 280 6.925610 TCATAGTATCAAAAGACACATGCC 57.074 37.500 0.00 0.00 0.00 4.40
280 281 8.146479 TCATCATAGTATCAAAAGACACATGC 57.854 34.615 0.00 0.00 0.00 4.06
283 284 9.725019 ACTTTCATCATAGTATCAAAAGACACA 57.275 29.630 0.00 0.00 0.00 3.72
291 292 8.094548 CGGGGAATACTTTCATCATAGTATCAA 58.905 37.037 0.00 0.00 36.75 2.57
292 293 7.453439 TCGGGGAATACTTTCATCATAGTATCA 59.547 37.037 0.00 0.00 36.75 2.15
293 294 7.837863 TCGGGGAATACTTTCATCATAGTATC 58.162 38.462 0.00 0.00 36.75 2.24
294 295 7.093289 CCTCGGGGAATACTTTCATCATAGTAT 60.093 40.741 0.00 0.00 38.80 2.12
295 296 6.210784 CCTCGGGGAATACTTTCATCATAGTA 59.789 42.308 0.00 0.00 33.23 1.82
296 297 5.012148 CCTCGGGGAATACTTTCATCATAGT 59.988 44.000 0.00 0.00 33.23 2.12
299 300 4.357918 CCTCGGGGAATACTTTCATCAT 57.642 45.455 0.00 0.00 33.23 2.45
300 301 3.838244 CCTCGGGGAATACTTTCATCA 57.162 47.619 0.00 0.00 33.23 3.07
301 302 7.961356 AATGCCCTCGGGGAATACTTTCATC 62.961 48.000 0.37 0.00 41.15 2.92
303 304 4.972844 AATGCCCTCGGGGAATACTTTCA 61.973 47.826 0.37 0.00 41.15 2.69
304 305 2.422945 AATGCCCTCGGGGAATACTTTC 60.423 50.000 0.37 0.00 41.15 2.62
305 306 1.569072 AATGCCCTCGGGGAATACTTT 59.431 47.619 0.37 0.00 41.15 2.66
307 308 2.105993 GTTAATGCCCTCGGGGAATACT 59.894 50.000 0.37 0.00 41.15 2.12
308 309 2.158726 TGTTAATGCCCTCGGGGAATAC 60.159 50.000 0.37 0.00 41.15 1.89
309 310 2.128535 TGTTAATGCCCTCGGGGAATA 58.871 47.619 0.37 0.00 41.15 1.75
310 311 0.923358 TGTTAATGCCCTCGGGGAAT 59.077 50.000 0.37 0.00 44.77 3.01
312 313 4.669721 CCATTGTTAATGCCCTCGGGGA 62.670 54.545 0.37 0.33 46.48 4.81
314 315 1.032014 CCATTGTTAATGCCCTCGGG 58.968 55.000 0.00 0.00 37.57 5.14
315 316 1.405105 CACCATTGTTAATGCCCTCGG 59.595 52.381 0.00 0.00 37.57 4.63
316 317 2.097466 GTCACCATTGTTAATGCCCTCG 59.903 50.000 0.00 0.00 37.57 4.63
317 318 3.088532 TGTCACCATTGTTAATGCCCTC 58.911 45.455 0.00 0.00 37.57 4.30
318 319 3.168035 TGTCACCATTGTTAATGCCCT 57.832 42.857 0.00 0.00 37.57 5.19
319 320 5.789643 ATATGTCACCATTGTTAATGCCC 57.210 39.130 0.00 0.00 37.57 5.36
320 321 8.359642 ACATTATATGTCACCATTGTTAATGCC 58.640 33.333 0.00 0.00 39.92 4.40
326 327 9.109393 GACTGTACATTATATGTCACCATTGTT 57.891 33.333 0.00 0.00 43.67 2.83
327 328 8.264347 TGACTGTACATTATATGTCACCATTGT 58.736 33.333 8.77 0.00 43.67 2.71
328 329 8.551205 GTGACTGTACATTATATGTCACCATTG 58.449 37.037 23.32 0.30 44.66 2.82
329 330 8.662781 GTGACTGTACATTATATGTCACCATT 57.337 34.615 23.32 0.00 44.66 3.16
334 335 8.482128 TGAATGGTGACTGTACATTATATGTCA 58.518 33.333 8.77 8.77 43.67 3.58
335 336 8.887036 TGAATGGTGACTGTACATTATATGTC 57.113 34.615 0.00 0.00 43.67 3.06
336 337 9.679661 TTTGAATGGTGACTGTACATTATATGT 57.320 29.630 0.00 0.00 46.92 2.29
339 340 9.173021 CCTTTTGAATGGTGACTGTACATTATA 57.827 33.333 0.00 0.00 35.17 0.98
350 2712 2.415893 CCGCATCCTTTTGAATGGTGAC 60.416 50.000 0.00 0.00 0.00 3.67
351 2713 1.818060 CCGCATCCTTTTGAATGGTGA 59.182 47.619 0.00 0.00 0.00 4.02
356 2718 2.094675 CCACTCCGCATCCTTTTGAAT 58.905 47.619 0.00 0.00 0.00 2.57
394 2756 9.959749 ACGTATTGTTACTTGTCATGAAAATTT 57.040 25.926 0.00 0.00 0.00 1.82
395 2757 9.393249 CACGTATTGTTACTTGTCATGAAAATT 57.607 29.630 0.00 0.00 0.00 1.82
396 2758 8.779303 TCACGTATTGTTACTTGTCATGAAAAT 58.221 29.630 0.00 0.00 31.39 1.82
397 2759 8.144155 TCACGTATTGTTACTTGTCATGAAAA 57.856 30.769 0.00 0.00 31.39 2.29
451 2813 8.197988 AGATTTGCTTCGTAAACTATCGAAAT 57.802 30.769 0.00 0.00 43.61 2.17
455 2817 7.044510 TCGTAAGATTTGCTTCGTAAACTATCG 60.045 37.037 0.00 0.00 45.01 2.92
485 2847 4.891727 CTCATACGCGGCCGCCTT 62.892 66.667 42.07 31.30 38.22 4.35
493 2855 0.669077 AAGGAGGTAGCTCATACGCG 59.331 55.000 22.66 3.53 34.99 6.01
504 2866 2.158219 TGGTCTTGTCAGGAAGGAGGTA 60.158 50.000 0.00 0.00 0.00 3.08
512 2874 1.275291 GGAATCGTGGTCTTGTCAGGA 59.725 52.381 0.00 0.00 34.25 3.86
516 2878 0.613777 AGGGGAATCGTGGTCTTGTC 59.386 55.000 0.00 0.00 0.00 3.18
518 2880 0.905357 AGAGGGGAATCGTGGTCTTG 59.095 55.000 0.00 0.00 0.00 3.02
523 2885 1.134371 GGAGAAAGAGGGGAATCGTGG 60.134 57.143 0.00 0.00 0.00 4.94
529 2891 1.204146 CGGATGGAGAAAGAGGGGAA 58.796 55.000 0.00 0.00 0.00 3.97
539 2901 0.824109 ATCAAAGCGACGGATGGAGA 59.176 50.000 0.00 0.00 0.00 3.71
548 2910 2.093783 CCTTTACCGTCATCAAAGCGAC 59.906 50.000 0.00 0.00 0.00 5.19
556 2918 1.523032 CCGCCCCTTTACCGTCATC 60.523 63.158 0.00 0.00 0.00 2.92
560 2922 2.348620 GTTCCGCCCCTTTACCGT 59.651 61.111 0.00 0.00 0.00 4.83
561 2923 2.437180 GGTTCCGCCCCTTTACCG 60.437 66.667 0.00 0.00 0.00 4.02
571 2934 0.534203 TTCTCACAACAGGGTTCCGC 60.534 55.000 0.00 0.00 0.00 5.54
572 2935 1.806542 CATTCTCACAACAGGGTTCCG 59.193 52.381 0.00 0.00 0.00 4.30
574 2937 3.476552 TCACATTCTCACAACAGGGTTC 58.523 45.455 0.00 0.00 0.00 3.62
579 2942 3.879295 ACCACTTCACATTCTCACAACAG 59.121 43.478 0.00 0.00 0.00 3.16
580 2943 3.884895 ACCACTTCACATTCTCACAACA 58.115 40.909 0.00 0.00 0.00 3.33
581 2944 6.017109 ACAATACCACTTCACATTCTCACAAC 60.017 38.462 0.00 0.00 0.00 3.32
639 3855 8.497554 CATGTTGCTGCAAAAATTTACATTACT 58.502 29.630 17.80 0.00 0.00 2.24
640 3856 7.268872 GCATGTTGCTGCAAAAATTTACATTAC 59.731 33.333 17.80 6.11 40.96 1.89
649 3894 1.149987 CCGCATGTTGCTGCAAAAAT 58.850 45.000 17.80 11.05 42.25 1.82
657 3902 5.531634 CAAAATAATATCCCGCATGTTGCT 58.468 37.500 0.00 0.00 42.25 3.91
666 3911 9.219603 TCTTCTTCTATGCAAAATAATATCCCG 57.780 33.333 0.00 0.00 0.00 5.14
677 3922 4.672542 GCACGCATTCTTCTTCTATGCAAA 60.673 41.667 0.00 0.00 43.66 3.68
679 3924 2.352651 GCACGCATTCTTCTTCTATGCA 59.647 45.455 0.00 0.00 43.66 3.96
680 3925 2.598439 CGCACGCATTCTTCTTCTATGC 60.598 50.000 0.00 0.00 40.88 3.14
681 3926 2.860136 TCGCACGCATTCTTCTTCTATG 59.140 45.455 0.00 0.00 0.00 2.23
682 3927 2.860735 GTCGCACGCATTCTTCTTCTAT 59.139 45.455 0.00 0.00 0.00 1.98
683 3928 2.259618 GTCGCACGCATTCTTCTTCTA 58.740 47.619 0.00 0.00 0.00 2.10
684 3929 1.071605 GTCGCACGCATTCTTCTTCT 58.928 50.000 0.00 0.00 0.00 2.85
685 3930 0.095417 GGTCGCACGCATTCTTCTTC 59.905 55.000 0.00 0.00 0.00 2.87
686 3931 1.298859 GGGTCGCACGCATTCTTCTT 61.299 55.000 0.00 0.00 0.00 2.52
687 3932 1.741770 GGGTCGCACGCATTCTTCT 60.742 57.895 0.00 0.00 0.00 2.85
688 3933 1.696832 GAGGGTCGCACGCATTCTTC 61.697 60.000 6.23 0.00 32.95 2.87
689 3934 1.741770 GAGGGTCGCACGCATTCTT 60.742 57.895 6.23 0.00 32.95 2.52
690 3935 2.125512 GAGGGTCGCACGCATTCT 60.126 61.111 6.23 0.00 32.95 2.40
691 3936 3.554692 CGAGGGTCGCACGCATTC 61.555 66.667 6.23 0.00 32.95 2.67
695 3940 2.340453 TTATACCGAGGGTCGCACGC 62.340 60.000 1.15 0.00 38.82 5.34
696 3941 0.593263 GTTATACCGAGGGTCGCACG 60.593 60.000 0.00 0.00 38.82 5.34
697 3942 0.743097 AGTTATACCGAGGGTCGCAC 59.257 55.000 0.00 0.00 38.82 5.34
698 3943 0.742505 CAGTTATACCGAGGGTCGCA 59.257 55.000 0.00 0.00 38.82 5.10
699 3944 0.031721 CCAGTTATACCGAGGGTCGC 59.968 60.000 0.00 0.00 38.82 5.19
700 3945 1.066605 CACCAGTTATACCGAGGGTCG 59.933 57.143 0.00 0.00 37.09 4.79
701 3946 1.202498 GCACCAGTTATACCGAGGGTC 60.202 57.143 0.00 0.00 37.09 4.46
702 3947 0.828677 GCACCAGTTATACCGAGGGT 59.171 55.000 0.00 0.00 40.16 4.34
703 3948 0.106149 GGCACCAGTTATACCGAGGG 59.894 60.000 0.00 0.00 0.00 4.30
704 3949 1.068741 GAGGCACCAGTTATACCGAGG 59.931 57.143 0.00 0.00 0.00 4.63
705 3950 1.269102 CGAGGCACCAGTTATACCGAG 60.269 57.143 0.00 0.00 0.00 4.63
706 3951 0.742505 CGAGGCACCAGTTATACCGA 59.257 55.000 0.00 0.00 0.00 4.69
707 3952 0.249322 CCGAGGCACCAGTTATACCG 60.249 60.000 0.00 0.00 0.00 4.02
708 3953 0.106149 CCCGAGGCACCAGTTATACC 59.894 60.000 0.00 0.00 0.00 2.73
709 3954 3.680842 CCCGAGGCACCAGTTATAC 57.319 57.895 0.00 0.00 0.00 1.47
721 3966 1.002087 AGTAGAACACAAAGCCCGAGG 59.998 52.381 0.00 0.00 0.00 4.63
722 3967 2.457366 AGTAGAACACAAAGCCCGAG 57.543 50.000 0.00 0.00 0.00 4.63
723 3968 2.103432 TGAAGTAGAACACAAAGCCCGA 59.897 45.455 0.00 0.00 0.00 5.14
724 3969 2.489971 TGAAGTAGAACACAAAGCCCG 58.510 47.619 0.00 0.00 0.00 6.13
725 3970 3.440522 GGATGAAGTAGAACACAAAGCCC 59.559 47.826 0.00 0.00 0.00 5.19
726 3971 4.072131 TGGATGAAGTAGAACACAAAGCC 58.928 43.478 0.00 0.00 0.00 4.35
727 3972 5.886960 ATGGATGAAGTAGAACACAAAGC 57.113 39.130 0.00 0.00 0.00 3.51
728 3973 8.103948 AGAAATGGATGAAGTAGAACACAAAG 57.896 34.615 0.00 0.00 0.00 2.77
729 3974 9.739276 ATAGAAATGGATGAAGTAGAACACAAA 57.261 29.630 0.00 0.00 0.00 2.83
731 3976 9.817809 GTATAGAAATGGATGAAGTAGAACACA 57.182 33.333 0.00 0.00 0.00 3.72
732 3977 9.817809 TGTATAGAAATGGATGAAGTAGAACAC 57.182 33.333 0.00 0.00 0.00 3.32
742 3987 9.919416 TGGAAAGATTTGTATAGAAATGGATGA 57.081 29.630 12.24 0.00 0.00 2.92
745 3990 9.618890 CTCTGGAAAGATTTGTATAGAAATGGA 57.381 33.333 12.24 0.46 0.00 3.41
746 3991 9.618890 TCTCTGGAAAGATTTGTATAGAAATGG 57.381 33.333 12.24 0.00 0.00 3.16
750 3995 9.838339 GGAATCTCTGGAAAGATTTGTATAGAA 57.162 33.333 1.05 0.00 44.16 2.10
751 3996 8.992349 TGGAATCTCTGGAAAGATTTGTATAGA 58.008 33.333 1.05 0.00 44.16 1.98
752 3997 9.618890 TTGGAATCTCTGGAAAGATTTGTATAG 57.381 33.333 1.05 0.00 44.16 1.31
756 4001 8.910944 CATATTGGAATCTCTGGAAAGATTTGT 58.089 33.333 1.05 0.00 44.16 2.83
757 4002 8.358148 CCATATTGGAATCTCTGGAAAGATTTG 58.642 37.037 1.05 0.00 44.16 2.32
758 4003 8.284435 TCCATATTGGAATCTCTGGAAAGATTT 58.716 33.333 1.05 0.00 45.00 2.17
759 4004 7.819500 TCCATATTGGAATCTCTGGAAAGATT 58.180 34.615 0.00 0.00 45.00 2.40
760 4005 7.398289 TCCATATTGGAATCTCTGGAAAGAT 57.602 36.000 0.00 0.00 45.00 2.40
761 4006 6.829985 TCCATATTGGAATCTCTGGAAAGA 57.170 37.500 0.00 0.00 45.00 2.52
774 4019 7.722728 ACGTATGTAGAAGTAGTCCATATTGGA 59.277 37.037 0.00 0.00 45.98 3.53
775 4020 7.883217 ACGTATGTAGAAGTAGTCCATATTGG 58.117 38.462 0.00 0.00 39.43 3.16
796 4041 9.459640 GTGTAGATTCTATCATTTTGCTACGTA 57.540 33.333 0.00 0.00 31.97 3.57
797 4042 8.198109 AGTGTAGATTCTATCATTTTGCTACGT 58.802 33.333 0.00 0.00 31.97 3.57
798 4043 8.581057 AGTGTAGATTCTATCATTTTGCTACG 57.419 34.615 0.00 0.00 31.97 3.51
799 4044 9.757227 AGAGTGTAGATTCTATCATTTTGCTAC 57.243 33.333 0.00 0.00 0.00 3.58
888 4133 9.917129 GCTATAGAATAAGTACTCCCTCTTTTC 57.083 37.037 3.21 0.00 0.00 2.29
889 4134 9.435570 TGCTATAGAATAAGTACTCCCTCTTTT 57.564 33.333 3.21 0.00 0.00 2.27
890 4135 9.084533 CTGCTATAGAATAAGTACTCCCTCTTT 57.915 37.037 3.21 0.00 0.00 2.52
891 4136 8.449625 TCTGCTATAGAATAAGTACTCCCTCTT 58.550 37.037 3.21 0.00 30.84 2.85
892 4137 7.991174 TCTGCTATAGAATAAGTACTCCCTCT 58.009 38.462 3.21 0.84 30.84 3.69
893 4138 8.817092 ATCTGCTATAGAATAAGTACTCCCTC 57.183 38.462 3.21 0.00 39.30 4.30
894 4139 8.620177 AGATCTGCTATAGAATAAGTACTCCCT 58.380 37.037 3.21 0.00 39.30 4.20
895 4140 8.682710 CAGATCTGCTATAGAATAAGTACTCCC 58.317 40.741 10.38 0.00 39.30 4.30
896 4141 8.682710 CCAGATCTGCTATAGAATAAGTACTCC 58.317 40.741 17.76 0.00 39.30 3.85
897 4142 9.456147 TCCAGATCTGCTATAGAATAAGTACTC 57.544 37.037 17.76 0.00 39.30 2.59
898 4143 9.238368 GTCCAGATCTGCTATAGAATAAGTACT 57.762 37.037 17.76 0.00 39.30 2.73
899 4144 8.463607 GGTCCAGATCTGCTATAGAATAAGTAC 58.536 40.741 17.76 0.00 39.30 2.73
900 4145 8.170730 TGGTCCAGATCTGCTATAGAATAAGTA 58.829 37.037 17.76 0.00 39.30 2.24
901 4146 7.013220 TGGTCCAGATCTGCTATAGAATAAGT 58.987 38.462 17.76 0.00 39.30 2.24
902 4147 7.319646 GTGGTCCAGATCTGCTATAGAATAAG 58.680 42.308 17.76 0.00 39.30 1.73
943 4188 0.034059 AAGGAAGTGAGTGTGAGCCG 59.966 55.000 0.00 0.00 0.00 5.52
946 4191 2.352225 CCGAGAAGGAAGTGAGTGTGAG 60.352 54.545 0.00 0.00 45.00 3.51
987 4235 2.833582 GGCATCCCGGTCTCTCGA 60.834 66.667 0.00 0.00 0.00 4.04
989 4237 2.503382 GGAGGCATCCCGGTCTCTC 61.503 68.421 5.99 0.00 39.47 3.20
990 4238 2.444895 GGAGGCATCCCGGTCTCT 60.445 66.667 5.99 0.00 39.47 3.10
1046 4294 1.112950 GAGGTGGTGGAGGTAGTAGC 58.887 60.000 0.00 0.00 0.00 3.58
1128 4376 0.983905 GGAGGAAGAGGGAGGGGAAC 60.984 65.000 0.00 0.00 0.00 3.62
1134 4382 1.219393 GTTGCGGAGGAAGAGGGAG 59.781 63.158 0.00 0.00 39.56 4.30
1162 4410 3.450115 GAGGCGGCAGTACGAGGT 61.450 66.667 13.08 0.00 35.47 3.85
1435 5362 0.318784 GAGTTGGAGACGAACACGCT 60.319 55.000 0.00 0.00 0.00 5.07
1495 5422 2.280592 GTCAAACACCCGCCTCGT 60.281 61.111 0.00 0.00 0.00 4.18
1572 5499 0.107312 GCATGTCATCCTGAGCACCT 60.107 55.000 0.00 0.00 0.00 4.00
1578 5505 1.904537 ACACTCAGCATGTCATCCTGA 59.095 47.619 6.30 6.30 37.40 3.86
1581 5508 2.105006 ACACACTCAGCATGTCATCC 57.895 50.000 0.00 0.00 37.40 3.51
1596 5523 1.575922 GCGCATCAGAGCAAACACA 59.424 52.632 0.30 0.00 40.58 3.72
1617 5544 1.065551 GAATTCAAGCCCATACCGCAC 59.934 52.381 0.00 0.00 0.00 5.34
1619 5546 1.680338 AGAATTCAAGCCCATACCGC 58.320 50.000 8.44 0.00 0.00 5.68
1620 5547 3.242739 CGAAAGAATTCAAGCCCATACCG 60.243 47.826 8.44 0.00 35.15 4.02
1623 5550 3.620488 AGCGAAAGAATTCAAGCCCATA 58.380 40.909 8.44 0.00 35.15 2.74
1659 5586 1.008079 GCTGCCAGCACAACACTTC 60.008 57.895 12.82 0.00 41.89 3.01
1687 5614 1.227823 CCGCGGCAATATCCCTCAA 60.228 57.895 14.67 0.00 0.00 3.02
1706 5633 1.423161 TCACCACACATCCATGAACCA 59.577 47.619 0.00 0.00 0.00 3.67
1719 5646 1.152777 CAACCCAGCCTTCACCACA 60.153 57.895 0.00 0.00 0.00 4.17
1920 5847 3.445450 TCTGCACCTCTGAATACAGACTC 59.555 47.826 0.00 0.00 46.55 3.36
1995 5922 1.955778 TCAATGTCACCTGCCAAGTTG 59.044 47.619 0.00 0.00 0.00 3.16
2065 5992 2.821969 GTGCACTCCCAATGAAGTCATT 59.178 45.455 10.32 0.54 46.62 2.57
2168 6095 0.322366 TGAAATCATCGCTGCCCACA 60.322 50.000 0.00 0.00 0.00 4.17
2173 6100 0.379669 CACCCTGAAATCATCGCTGC 59.620 55.000 0.00 0.00 0.00 5.25
2514 6449 2.670019 AAAACCGTAAAGCCTCCCTT 57.330 45.000 0.00 0.00 34.51 3.95
2722 6659 0.541392 AGTCACACTCCAGCAACACA 59.459 50.000 0.00 0.00 0.00 3.72
2858 6804 2.413239 GGAGATCAACAACACATGTGCG 60.413 50.000 25.68 18.72 42.99 5.34
3094 7045 8.598041 TCTCTAATTTTTGAAGCTAAGGAGAGT 58.402 33.333 0.00 0.00 0.00 3.24
3253 8585 8.677300 GTCAGTTTATCAATCTTGGAAAGCATA 58.323 33.333 0.00 0.00 45.70 3.14
3349 8686 2.897326 TGCCACAGCTAGTTTCTCACTA 59.103 45.455 0.00 0.00 40.80 2.74
3565 8914 1.040339 TTGGAACCACTGCACCAACC 61.040 55.000 0.31 0.00 37.46 3.77
3567 8917 1.110442 CTTTGGAACCACTGCACCAA 58.890 50.000 0.31 0.31 40.05 3.67
3569 8919 0.755327 ACCTTTGGAACCACTGCACC 60.755 55.000 0.00 0.00 0.00 5.01
3669 9038 0.978146 GTTCCCTAGGCCTCTGCTCA 60.978 60.000 9.68 0.00 37.74 4.26
3670 9039 1.826709 GTTCCCTAGGCCTCTGCTC 59.173 63.158 9.68 0.00 37.74 4.26
3671 9040 2.060980 CGTTCCCTAGGCCTCTGCT 61.061 63.158 9.68 0.00 37.74 4.24
3672 9041 1.041447 TACGTTCCCTAGGCCTCTGC 61.041 60.000 9.68 0.00 0.00 4.26
3673 9042 1.409427 CTTACGTTCCCTAGGCCTCTG 59.591 57.143 9.68 3.03 0.00 3.35
3674 9043 1.777941 CTTACGTTCCCTAGGCCTCT 58.222 55.000 9.68 0.00 0.00 3.69
3675 9044 0.104487 GCTTACGTTCCCTAGGCCTC 59.896 60.000 9.68 0.00 0.00 4.70
3676 9045 0.325390 AGCTTACGTTCCCTAGGCCT 60.325 55.000 11.78 11.78 0.00 5.19
3821 9195 4.497507 GGTTTAAATCATCGCAAGGCTACC 60.498 45.833 0.00 0.00 38.47 3.18
3842 9216 4.876107 CCTGCTGAACGAAATGTAATAGGT 59.124 41.667 0.00 0.00 0.00 3.08
3856 9231 0.519077 CGCCTTTCTTCCTGCTGAAC 59.481 55.000 0.00 0.00 0.00 3.18
3858 9233 1.672356 GCGCCTTTCTTCCTGCTGA 60.672 57.895 0.00 0.00 0.00 4.26
4010 9416 1.202475 GCGAAGGAGAGGATGTCTTCC 60.202 57.143 0.00 0.00 45.85 3.46
4019 9425 1.996798 TATAGGTGGCGAAGGAGAGG 58.003 55.000 0.00 0.00 0.00 3.69
4175 9581 1.861982 TAAGAGGCCCAGGTGAGTAC 58.138 55.000 0.00 0.00 0.00 2.73
4195 9601 8.638873 ACAAGCTTAAATTTACTTACAGCCTTT 58.361 29.630 12.92 2.77 0.00 3.11
4386 9794 0.248743 CATGGCAAGGCAACGCTATG 60.249 55.000 0.00 5.14 40.12 2.23
4388 9796 0.893270 AACATGGCAAGGCAACGCTA 60.893 50.000 0.00 0.00 46.39 4.26
4421 9829 4.025015 ACATGATCTTGAGCAAAATCGC 57.975 40.909 15.03 0.00 0.00 4.58
4423 9831 9.745880 AATAATGACATGATCTTGAGCAAAATC 57.254 29.630 15.03 1.67 0.00 2.17
4434 9842 7.615582 AACGAACACAATAATGACATGATCT 57.384 32.000 0.00 0.00 0.00 2.75
4455 9863 4.614555 TGTTCAGGCATTAGCAATAACG 57.385 40.909 0.00 0.00 44.61 3.18
4473 9884 0.541764 ACCGTGCCCATCCAAATGTT 60.542 50.000 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.