Multiple sequence alignment - TraesCS3D01G506000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G506000 chr3D 100.000 4336 0 0 1 4336 593124712 593120377 0.000000e+00 8008.0
1 TraesCS3D01G506000 chr3D 82.752 487 70 11 1914 2393 238459511 238459032 5.180000e-114 422.0
2 TraesCS3D01G506000 chr3D 82.268 485 73 10 2514 2996 238458877 238458404 1.450000e-109 407.0
3 TraesCS3D01G506000 chr3D 86.719 128 17 0 4177 4304 5616114 5616241 4.520000e-30 143.0
4 TraesCS3D01G506000 chr3D 81.325 166 18 10 3596 3759 141649209 141649055 5.890000e-24 122.0
5 TraesCS3D01G506000 chr3D 82.540 126 14 5 4184 4308 43024285 43024167 2.130000e-18 104.0
6 TraesCS3D01G506000 chr3B 88.773 2690 184 45 885 3518 795431795 795429168 0.000000e+00 3186.0
7 TraesCS3D01G506000 chr3B 83.187 571 69 10 3586 4131 795426995 795426427 8.370000e-137 497.0
8 TraesCS3D01G506000 chr3A 89.443 1184 89 19 2382 3544 724386610 724385442 0.000000e+00 1461.0
9 TraesCS3D01G506000 chr3A 96.522 460 13 1 1922 2378 724387355 724386896 0.000000e+00 758.0
10 TraesCS3D01G506000 chr3A 80.077 1044 131 48 885 1893 724388354 724387353 0.000000e+00 704.0
11 TraesCS3D01G506000 chr3A 77.160 810 135 16 4 786 724389226 724388440 4.010000e-115 425.0
12 TraesCS3D01G506000 chr3A 80.882 136 21 5 4184 4316 724384236 724384369 7.670000e-18 102.0
13 TraesCS3D01G506000 chr3A 80.645 124 19 5 3586 3705 467408639 467408761 1.660000e-14 91.6
14 TraesCS3D01G506000 chr3A 83.333 90 11 4 3632 3719 689722005 689721918 3.590000e-11 80.5
15 TraesCS3D01G506000 chr4B 81.208 298 42 11 3869 4157 661169674 661169966 1.210000e-55 228.0
16 TraesCS3D01G506000 chr4B 86.458 96 4 6 4220 4308 446336663 446336570 3.570000e-16 97.1
17 TraesCS3D01G506000 chr7D 80.061 326 46 16 3868 4180 599188454 599188773 1.570000e-54 224.0
18 TraesCS3D01G506000 chr4D 79.630 324 51 12 3870 4181 502043354 502043034 7.300000e-53 219.0
19 TraesCS3D01G506000 chr4D 80.066 301 43 14 3868 4161 477409214 477408924 1.580000e-49 207.0
20 TraesCS3D01G506000 chr2D 79.394 330 50 12 3868 4181 141189580 141189253 2.630000e-52 217.0
21 TraesCS3D01G506000 chr2D 86.719 128 14 1 4184 4308 17208645 17208518 5.850000e-29 139.0
22 TraesCS3D01G506000 chr2D 85.915 71 8 2 4173 4241 78527783 78527713 1.670000e-09 75.0
23 TraesCS3D01G506000 chr5B 79.667 300 46 12 3869 4156 27490751 27490455 7.350000e-48 202.0
24 TraesCS3D01G506000 chr5B 78.419 329 50 16 3868 4182 123765206 123764885 1.230000e-45 195.0
25 TraesCS3D01G506000 chr6D 78.419 329 51 17 3868 4182 106079001 106078679 3.420000e-46 196.0
26 TraesCS3D01G506000 chr6D 82.443 131 16 7 3594 3719 243625804 243625676 1.650000e-19 108.0
27 TraesCS3D01G506000 chr6D 90.196 51 5 0 4184 4234 221214257 221214307 2.800000e-07 67.6
28 TraesCS3D01G506000 chrUn 84.800 125 19 0 4184 4308 272240633 272240757 4.550000e-25 126.0
29 TraesCS3D01G506000 chr2B 84.921 126 15 4 3586 3707 690213534 690213659 1.640000e-24 124.0
30 TraesCS3D01G506000 chr2B 88.571 70 8 0 4184 4253 191747553 191747484 7.730000e-13 86.1
31 TraesCS3D01G506000 chr2B 87.500 56 5 2 4253 4308 16290367 16290314 3.620000e-06 63.9
32 TraesCS3D01G506000 chr7A 83.761 117 14 5 3607 3719 83621309 83621194 5.930000e-19 106.0
33 TraesCS3D01G506000 chr1B 81.159 138 21 5 3586 3719 305249421 305249557 5.930000e-19 106.0
34 TraesCS3D01G506000 chr1B 81.890 127 18 5 4184 4308 632029527 632029404 7.670000e-18 102.0
35 TraesCS3D01G506000 chr5D 79.310 145 26 3 3598 3738 505928085 505927941 9.920000e-17 99.0
36 TraesCS3D01G506000 chr5D 83.178 107 16 2 2192 2297 248585121 248585016 3.570000e-16 97.1
37 TraesCS3D01G506000 chr5D 81.148 122 20 3 3600 3719 375053006 375053126 1.280000e-15 95.3
38 TraesCS3D01G506000 chr6B 90.000 60 6 0 4184 4243 622732465 622732524 1.290000e-10 78.7
39 TraesCS3D01G506000 chr6B 87.500 56 5 2 4253 4308 221730013 221729960 3.620000e-06 63.9
40 TraesCS3D01G506000 chr2A 92.453 53 4 0 4256 4308 694589616 694589668 4.650000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G506000 chr3D 593120377 593124712 4335 True 8008.0 8008 100.0000 1 4336 1 chr3D.!!$R3 4335
1 TraesCS3D01G506000 chr3D 238458404 238459511 1107 True 414.5 422 82.5100 1914 2996 2 chr3D.!!$R4 1082
2 TraesCS3D01G506000 chr3B 795426427 795431795 5368 True 1841.5 3186 85.9800 885 4131 2 chr3B.!!$R1 3246
3 TraesCS3D01G506000 chr3A 724385442 724389226 3784 True 837.0 1461 85.8005 4 3544 4 chr3A.!!$R2 3540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
794 822 0.033503 TCCAGACAGCTACATCCGGA 60.034 55.0 6.61 6.61 0.00 5.14 F
795 823 0.103208 CCAGACAGCTACATCCGGAC 59.897 60.0 6.12 0.00 0.00 4.79 F
796 824 0.248661 CAGACAGCTACATCCGGACG 60.249 60.0 6.12 0.00 0.00 4.79 F
1205 1264 0.397941 TGAGTTCTTGACTGGCAGGG 59.602 55.0 20.34 6.11 39.19 4.45 F
1471 1543 0.469494 TTCTGCTGCTGTTGGAGACA 59.531 50.0 0.00 0.00 39.83 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2495 2933 0.391661 AGCATTGCTTCGTCACCGAT 60.392 50.000 5.03 0.0 43.80 4.18 R
2538 2977 2.749076 GGCACATGCTGACAGAACAATA 59.251 45.455 6.65 0.0 41.70 1.90 R
2581 3020 3.679389 AGGACGCATCATGTTTCTTCTT 58.321 40.909 0.00 0.0 0.00 2.52 R
3001 3441 0.971386 GGGTACCGGAGAGAAACACA 59.029 55.000 9.46 0.0 40.86 3.72 R
3396 3840 0.037447 TGGATTCATGTTGGTCGCCA 59.963 50.000 0.00 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.432628 CGGGTTGCCGTCTCTCAC 60.433 66.667 0.00 0.00 0.00 3.51
19 20 2.047179 GGTTGCCGTCTCTCACCC 60.047 66.667 0.00 0.00 0.00 4.61
24 25 2.678934 CCGTCTCTCACCCCCGAA 60.679 66.667 0.00 0.00 0.00 4.30
45 46 4.814294 ATCGCCGACAAGCCGACC 62.814 66.667 0.00 0.00 33.46 4.79
47 48 4.124351 CGCCGACAAGCCGACCTA 62.124 66.667 0.00 0.00 0.00 3.08
52 53 1.067776 CCGACAAGCCGACCTATATCC 60.068 57.143 0.00 0.00 0.00 2.59
54 55 2.035449 CGACAAGCCGACCTATATCCAA 59.965 50.000 0.00 0.00 0.00 3.53
56 57 4.082408 CGACAAGCCGACCTATATCCAATA 60.082 45.833 0.00 0.00 0.00 1.90
74 75 2.967397 CGCACAACGGTCCTCCTA 59.033 61.111 0.00 0.00 38.44 2.94
75 76 1.153823 CGCACAACGGTCCTCCTAG 60.154 63.158 0.00 0.00 38.44 3.02
76 77 1.874345 CGCACAACGGTCCTCCTAGT 61.874 60.000 0.00 0.00 38.44 2.57
77 78 0.389948 GCACAACGGTCCTCCTAGTG 60.390 60.000 0.00 0.00 33.64 2.74
80 81 1.988406 AACGGTCCTCCTAGTGGGC 60.988 63.158 0.00 0.00 34.39 5.36
109 110 0.543749 GGCCACCTCATGCTTCTACT 59.456 55.000 0.00 0.00 0.00 2.57
111 112 1.474143 GCCACCTCATGCTTCTACTCC 60.474 57.143 0.00 0.00 0.00 3.85
113 114 0.461961 ACCTCATGCTTCTACTCCGC 59.538 55.000 0.00 0.00 0.00 5.54
114 115 0.249657 CCTCATGCTTCTACTCCGCC 60.250 60.000 0.00 0.00 0.00 6.13
115 116 0.461548 CTCATGCTTCTACTCCGCCA 59.538 55.000 0.00 0.00 0.00 5.69
116 117 0.461548 TCATGCTTCTACTCCGCCAG 59.538 55.000 0.00 0.00 0.00 4.85
153 154 2.474816 GCCCTAGAGCTCGTGTTAATG 58.525 52.381 8.37 0.00 0.00 1.90
155 156 2.474816 CCTAGAGCTCGTGTTAATGGC 58.525 52.381 8.37 0.00 0.00 4.40
160 161 1.429148 GCTCGTGTTAATGGCGGAGG 61.429 60.000 0.00 0.00 0.00 4.30
163 164 0.390603 CGTGTTAATGGCGGAGGTCA 60.391 55.000 0.00 0.00 0.00 4.02
167 168 0.254462 TTAATGGCGGAGGTCATGCA 59.746 50.000 0.00 0.00 37.55 3.96
175 176 1.142748 GAGGTCATGCACGGAGGAG 59.857 63.158 0.00 0.00 0.00 3.69
177 178 2.359169 GGTCATGCACGGAGGAGGA 61.359 63.158 0.00 0.00 0.00 3.71
181 182 0.178767 CATGCACGGAGGAGGATCAA 59.821 55.000 0.00 0.00 36.25 2.57
183 184 0.250234 TGCACGGAGGAGGATCAAAG 59.750 55.000 0.00 0.00 36.25 2.77
186 187 1.279271 CACGGAGGAGGATCAAAGGTT 59.721 52.381 0.00 0.00 36.25 3.50
188 189 1.279271 CGGAGGAGGATCAAAGGTTGT 59.721 52.381 0.00 0.00 36.25 3.32
189 190 2.678190 CGGAGGAGGATCAAAGGTTGTC 60.678 54.545 0.00 0.00 36.25 3.18
206 207 3.490759 CGTGGTGCAGTGCGGATC 61.491 66.667 11.20 0.00 0.00 3.36
210 211 2.738521 GTGCAGTGCGGATCGTGT 60.739 61.111 11.20 0.00 0.00 4.49
218 219 4.907034 CGGATCGTGTCGGGCGAG 62.907 72.222 0.00 0.00 41.83 5.03
279 280 0.670162 GTTGTGTCAATGCAGGCACT 59.330 50.000 11.44 0.00 43.88 4.40
295 296 3.584848 AGGCACTGGAGTAAGTTTCTCAT 59.415 43.478 11.14 0.00 37.18 2.90
296 297 3.935828 GGCACTGGAGTAAGTTTCTCATC 59.064 47.826 11.14 0.00 34.04 2.92
301 302 2.194271 GAGTAAGTTTCTCATCCGCCG 58.806 52.381 4.75 0.00 32.79 6.46
315 316 0.239879 CCGCCGCACTTGTTTAATGT 59.760 50.000 0.00 0.00 0.00 2.71
316 317 1.335506 CCGCCGCACTTGTTTAATGTT 60.336 47.619 0.00 0.00 0.00 2.71
324 325 3.182173 CACTTGTTTAATGTTGGCAAGCG 59.818 43.478 0.00 0.00 39.86 4.68
346 347 0.250295 CAGACGGGAGCCTGTTTGAA 60.250 55.000 12.37 0.00 39.05 2.69
350 351 1.243342 CGGGAGCCTGTTTGAATGCA 61.243 55.000 0.00 0.00 0.00 3.96
366 367 0.264657 TGCAGTAGATAGCCCTCCCA 59.735 55.000 0.00 0.00 0.00 4.37
380 381 3.436243 CCCTCCCATCCTATCTAGTCAC 58.564 54.545 0.00 0.00 0.00 3.67
381 382 3.076785 CCCTCCCATCCTATCTAGTCACT 59.923 52.174 0.00 0.00 0.00 3.41
382 383 4.340617 CCTCCCATCCTATCTAGTCACTC 58.659 52.174 0.00 0.00 0.00 3.51
383 384 4.340617 CTCCCATCCTATCTAGTCACTCC 58.659 52.174 0.00 0.00 0.00 3.85
388 389 2.438392 TCCTATCTAGTCACTCCGCTCA 59.562 50.000 0.00 0.00 0.00 4.26
390 391 1.686355 ATCTAGTCACTCCGCTCAGG 58.314 55.000 0.00 0.00 42.97 3.86
393 394 1.944024 CTAGTCACTCCGCTCAGGTAG 59.056 57.143 0.00 0.00 41.99 3.18
398 399 2.889200 CTCCGCTCAGGTAGGAGTT 58.111 57.895 2.77 0.00 44.79 3.01
406 407 3.617775 GCTCAGGTAGGAGTTGGTTTCTC 60.618 52.174 0.00 0.00 37.24 2.87
413 414 0.319641 GAGTTGGTTTCTCGGTCGCT 60.320 55.000 0.00 0.00 0.00 4.93
416 417 3.479269 GGTTTCTCGGTCGCTGCG 61.479 66.667 17.25 17.25 0.00 5.18
428 429 0.953471 TCGCTGCGCCTGTTTAATGT 60.953 50.000 18.65 0.00 0.00 2.71
431 432 0.096976 CTGCGCCTGTTTAATGTCGG 59.903 55.000 4.18 0.00 0.00 4.79
434 435 1.326548 GCGCCTGTTTAATGTCGGTAG 59.673 52.381 0.00 0.00 0.00 3.18
435 436 2.883574 CGCCTGTTTAATGTCGGTAGA 58.116 47.619 0.00 0.00 0.00 2.59
436 437 3.454375 CGCCTGTTTAATGTCGGTAGAT 58.546 45.455 0.00 0.00 0.00 1.98
437 438 3.245284 CGCCTGTTTAATGTCGGTAGATG 59.755 47.826 0.00 0.00 0.00 2.90
438 439 3.560068 GCCTGTTTAATGTCGGTAGATGG 59.440 47.826 0.00 0.00 0.00 3.51
439 440 4.682320 GCCTGTTTAATGTCGGTAGATGGA 60.682 45.833 0.00 0.00 0.00 3.41
440 441 4.809426 CCTGTTTAATGTCGGTAGATGGAC 59.191 45.833 0.00 0.00 0.00 4.02
441 442 4.426416 TGTTTAATGTCGGTAGATGGACG 58.574 43.478 0.00 0.00 35.95 4.79
442 443 3.720949 TTAATGTCGGTAGATGGACGG 57.279 47.619 0.00 0.00 35.95 4.79
443 444 1.771565 AATGTCGGTAGATGGACGGA 58.228 50.000 0.00 0.00 35.95 4.69
444 445 1.030457 ATGTCGGTAGATGGACGGAC 58.970 55.000 7.16 7.16 45.20 4.79
445 446 1.354506 GTCGGTAGATGGACGGACG 59.645 63.158 0.00 0.00 39.10 4.79
446 447 1.820906 TCGGTAGATGGACGGACGG 60.821 63.158 0.00 0.00 0.00 4.79
447 448 2.842256 CGGTAGATGGACGGACGGG 61.842 68.421 0.00 0.00 0.00 5.28
448 449 1.454479 GGTAGATGGACGGACGGGA 60.454 63.158 0.00 0.00 0.00 5.14
449 450 1.453762 GGTAGATGGACGGACGGGAG 61.454 65.000 0.00 0.00 0.00 4.30
450 451 1.826921 TAGATGGACGGACGGGAGC 60.827 63.158 0.00 0.00 0.00 4.70
451 452 4.222847 GATGGACGGACGGGAGCC 62.223 72.222 0.00 0.00 0.00 4.70
455 456 3.692406 GACGGACGGGAGCCAGTT 61.692 66.667 0.00 0.00 0.00 3.16
456 457 3.236003 GACGGACGGGAGCCAGTTT 62.236 63.158 0.00 0.00 0.00 2.66
462 463 1.244019 ACGGGAGCCAGTTTGAATGC 61.244 55.000 0.00 0.00 0.00 3.56
464 465 1.508088 GGAGCCAGTTTGAATGCGG 59.492 57.895 0.00 0.00 0.00 5.69
472 473 3.809832 CCAGTTTGAATGCGGTAGATAGG 59.190 47.826 0.00 0.00 0.00 2.57
494 495 3.393800 CATCGCCTGTCCTATTAAGTGG 58.606 50.000 0.00 0.00 0.00 4.00
495 496 2.463752 TCGCCTGTCCTATTAAGTGGT 58.536 47.619 0.00 0.00 0.00 4.16
497 498 2.093658 CGCCTGTCCTATTAAGTGGTGT 60.094 50.000 0.00 0.00 0.00 4.16
504 505 2.936498 CCTATTAAGTGGTGTTGCTCCG 59.064 50.000 0.00 0.00 0.00 4.63
505 506 2.851263 ATTAAGTGGTGTTGCTCCGA 57.149 45.000 0.00 0.00 0.00 4.55
513 514 1.069227 GGTGTTGCTCCGACATTGAAC 60.069 52.381 0.00 0.00 29.89 3.18
518 519 1.069978 TGCTCCGACATTGAACAGACA 59.930 47.619 0.00 0.00 0.00 3.41
519 520 1.461127 GCTCCGACATTGAACAGACAC 59.539 52.381 0.00 0.00 0.00 3.67
557 558 1.078143 ACCTCTTCAATGCCGGCTC 60.078 57.895 29.70 0.00 0.00 4.70
558 559 1.821332 CCTCTTCAATGCCGGCTCC 60.821 63.158 29.70 0.00 0.00 4.70
568 569 2.765807 CCGGCTCCCATGAGAGGT 60.766 66.667 6.35 0.00 41.42 3.85
575 576 2.105128 CCATGAGAGGTCGCGTCC 59.895 66.667 14.89 14.89 0.00 4.79
605 606 4.670199 CATGAATGCAGGCTGGGA 57.330 55.556 17.64 0.00 0.00 4.37
606 607 2.415825 CATGAATGCAGGCTGGGAG 58.584 57.895 17.64 0.00 0.00 4.30
607 608 0.395311 CATGAATGCAGGCTGGGAGT 60.395 55.000 17.64 0.00 0.00 3.85
608 609 1.134007 CATGAATGCAGGCTGGGAGTA 60.134 52.381 17.64 0.00 0.00 2.59
613 632 2.439104 GCAGGCTGGGAGTAGAGGG 61.439 68.421 17.64 0.00 0.00 4.30
616 635 4.228567 GCTGGGAGTAGAGGGCGC 62.229 72.222 0.00 0.00 0.00 6.53
637 656 0.958091 TGTGCCGGAGATGTTTTTGG 59.042 50.000 5.05 0.00 0.00 3.28
642 661 2.446435 CCGGAGATGTTTTTGGATGGT 58.554 47.619 0.00 0.00 0.00 3.55
651 670 1.666365 TTTTGGATGGTACCGGGGTA 58.334 50.000 6.32 0.00 0.00 3.69
653 672 1.426751 TTGGATGGTACCGGGGTATC 58.573 55.000 6.32 4.00 32.82 2.24
664 683 1.727511 CGGGGTATCGGACGCTTACA 61.728 60.000 5.64 0.00 40.79 2.41
687 711 2.113139 CCGGACACCCACAAAGCT 59.887 61.111 0.00 0.00 0.00 3.74
688 712 2.260869 CCGGACACCCACAAAGCTG 61.261 63.158 0.00 0.00 0.00 4.24
691 715 2.521708 ACACCCACAAAGCTGCCC 60.522 61.111 0.00 0.00 0.00 5.36
693 717 1.074775 CACCCACAAAGCTGCCCTA 59.925 57.895 0.00 0.00 0.00 3.53
694 718 0.962356 CACCCACAAAGCTGCCCTAG 60.962 60.000 0.00 0.00 0.00 3.02
701 725 1.340889 CAAAGCTGCCCTAGTTTGCAA 59.659 47.619 0.00 0.00 36.98 4.08
721 745 2.036006 CGGTTTGCGGGAATTCGGA 61.036 57.895 0.00 0.00 0.00 4.55
725 749 1.201414 GTTTGCGGGAATTCGGACAAT 59.799 47.619 0.00 0.00 0.00 2.71
726 750 1.540267 TTGCGGGAATTCGGACAATT 58.460 45.000 0.00 0.00 0.00 2.32
728 752 1.091537 GCGGGAATTCGGACAATTGA 58.908 50.000 13.59 0.00 0.00 2.57
733 757 3.119495 GGGAATTCGGACAATTGAACTGG 60.119 47.826 13.59 3.24 0.00 4.00
735 759 4.475944 GAATTCGGACAATTGAACTGGTG 58.524 43.478 13.59 0.00 0.00 4.17
738 762 1.334960 CGGACAATTGAACTGGTGCAC 60.335 52.381 13.59 8.80 0.00 4.57
739 763 1.680735 GGACAATTGAACTGGTGCACA 59.319 47.619 20.43 3.92 0.00 4.57
754 778 0.905357 GCACAGTCAGATGGGGTACT 59.095 55.000 0.00 0.00 0.00 2.73
755 779 1.406069 GCACAGTCAGATGGGGTACTG 60.406 57.143 0.00 0.00 43.90 2.74
762 790 1.628340 CAGATGGGGTACTGTGTTGGA 59.372 52.381 0.00 0.00 0.00 3.53
764 792 3.454447 CAGATGGGGTACTGTGTTGGATA 59.546 47.826 0.00 0.00 0.00 2.59
766 794 4.726825 AGATGGGGTACTGTGTTGGATAAT 59.273 41.667 0.00 0.00 0.00 1.28
768 796 6.388689 AGATGGGGTACTGTGTTGGATAATAA 59.611 38.462 0.00 0.00 0.00 1.40
774 802 8.843262 GGGTACTGTGTTGGATAATAAATTACC 58.157 37.037 0.00 0.00 0.00 2.85
780 808 8.553153 TGTGTTGGATAATAAATTACCTCCAGA 58.447 33.333 5.59 0.00 34.60 3.86
786 814 8.594550 GGATAATAAATTACCTCCAGACAGCTA 58.405 37.037 0.00 0.00 0.00 3.32
787 815 9.425577 GATAATAAATTACCTCCAGACAGCTAC 57.574 37.037 0.00 0.00 0.00 3.58
790 818 4.946478 ATTACCTCCAGACAGCTACATC 57.054 45.455 0.00 0.00 0.00 3.06
791 819 1.490574 ACCTCCAGACAGCTACATCC 58.509 55.000 0.00 0.00 0.00 3.51
793 821 0.387202 CTCCAGACAGCTACATCCGG 59.613 60.000 0.00 0.00 0.00 5.14
794 822 0.033503 TCCAGACAGCTACATCCGGA 60.034 55.000 6.61 6.61 0.00 5.14
795 823 0.103208 CCAGACAGCTACATCCGGAC 59.897 60.000 6.12 0.00 0.00 4.79
796 824 0.248661 CAGACAGCTACATCCGGACG 60.249 60.000 6.12 0.00 0.00 4.79
797 825 1.065928 GACAGCTACATCCGGACGG 59.934 63.158 6.12 4.50 0.00 4.79
807 852 2.035421 TCCGGACGGACGATATTGG 58.965 57.895 9.76 0.00 39.76 3.16
816 861 3.090037 CGGACGATATTGGAGATACCCT 58.910 50.000 0.00 0.00 38.00 4.34
819 864 5.163642 CGGACGATATTGGAGATACCCTAAG 60.164 48.000 0.00 0.00 38.00 2.18
829 874 4.262506 GGAGATACCCTAAGATCCCAAACG 60.263 50.000 0.00 0.00 0.00 3.60
830 875 4.296056 AGATACCCTAAGATCCCAAACGT 58.704 43.478 0.00 0.00 0.00 3.99
842 887 6.001460 AGATCCCAAACGTTGACAAAATCTA 58.999 36.000 0.00 0.00 0.00 1.98
843 888 6.488683 AGATCCCAAACGTTGACAAAATCTAA 59.511 34.615 0.00 0.00 0.00 2.10
844 889 6.067263 TCCCAAACGTTGACAAAATCTAAG 57.933 37.500 0.00 0.00 0.00 2.18
845 890 5.823570 TCCCAAACGTTGACAAAATCTAAGA 59.176 36.000 0.00 0.00 0.00 2.10
847 892 6.416750 CCCAAACGTTGACAAAATCTAAGAAC 59.583 38.462 0.00 0.00 0.00 3.01
848 893 6.970043 CCAAACGTTGACAAAATCTAAGAACA 59.030 34.615 0.00 0.00 0.00 3.18
850 895 7.548196 AACGTTGACAAAATCTAAGAACAGA 57.452 32.000 0.00 0.00 0.00 3.41
854 899 9.284594 CGTTGACAAAATCTAAGAACAGAAAAA 57.715 29.630 0.00 0.00 0.00 1.94
899 944 1.829222 GGATCTACAAGACCCCGTTGA 59.171 52.381 0.00 0.00 0.00 3.18
900 945 2.235402 GGATCTACAAGACCCCGTTGAA 59.765 50.000 0.00 0.00 0.00 2.69
912 957 4.643463 ACCCCGTTGAAAAGTTTTGTTTT 58.357 34.783 5.36 0.00 32.18 2.43
913 958 4.452795 ACCCCGTTGAAAAGTTTTGTTTTG 59.547 37.500 5.36 0.00 29.58 2.44
918 963 6.146347 CCGTTGAAAAGTTTTGTTTTGGAAGA 59.854 34.615 5.36 0.00 29.58 2.87
937 982 4.254402 AGACAAAAACCTACTCGACTCC 57.746 45.455 0.00 0.00 0.00 3.85
972 1017 3.660111 GCGGCCGCAACTTCTGTT 61.660 61.111 43.55 0.00 41.49 3.16
979 1024 1.804748 CCGCAACTTCTGTTAACCTCC 59.195 52.381 2.48 0.00 34.60 4.30
980 1025 2.550208 CCGCAACTTCTGTTAACCTCCT 60.550 50.000 2.48 0.00 34.60 3.69
984 1029 4.238514 CAACTTCTGTTAACCTCCTCTCG 58.761 47.826 2.48 0.00 34.60 4.04
990 1035 1.750206 GTTAACCTCCTCTCGTCTCCC 59.250 57.143 0.00 0.00 0.00 4.30
997 1052 1.000486 CTCTCGTCTCCCCCTTCCA 60.000 63.158 0.00 0.00 0.00 3.53
1008 1063 1.153289 CCCTTCCACGATGAGGCTG 60.153 63.158 0.00 0.00 0.00 4.85
1011 1066 2.842394 CTTCCACGATGAGGCTGCGT 62.842 60.000 0.00 0.00 39.04 5.24
1120 1175 3.609798 ACCAGTATAGGTGAGCCGT 57.390 52.632 0.00 0.00 41.30 5.68
1136 1191 3.567797 GTCTGCTCGCCGCCAATC 61.568 66.667 0.00 0.00 38.05 2.67
1158 1213 1.617850 CATCCTCCCTCTCTGAATCCG 59.382 57.143 0.00 0.00 0.00 4.18
1163 1218 1.414061 CCCTCTCTGAATCCGCCCAT 61.414 60.000 0.00 0.00 0.00 4.00
1191 1250 4.279420 GCAGGGAAAACTTGATCTTGAGTT 59.721 41.667 0.00 0.00 37.69 3.01
1192 1251 5.563671 GCAGGGAAAACTTGATCTTGAGTTC 60.564 44.000 9.19 1.84 35.17 3.01
1193 1252 5.767168 CAGGGAAAACTTGATCTTGAGTTCT 59.233 40.000 9.19 0.00 35.17 3.01
1194 1253 6.264067 CAGGGAAAACTTGATCTTGAGTTCTT 59.736 38.462 9.19 7.01 35.17 2.52
1195 1254 6.264067 AGGGAAAACTTGATCTTGAGTTCTTG 59.736 38.462 9.19 0.00 35.17 3.02
1196 1255 6.263168 GGGAAAACTTGATCTTGAGTTCTTGA 59.737 38.462 9.19 0.00 35.17 3.02
1197 1256 7.135467 GGAAAACTTGATCTTGAGTTCTTGAC 58.865 38.462 9.19 0.00 35.17 3.18
1198 1257 7.012799 GGAAAACTTGATCTTGAGTTCTTGACT 59.987 37.037 9.19 0.00 42.70 3.41
1199 1258 6.857777 AACTTGATCTTGAGTTCTTGACTG 57.142 37.500 0.00 0.00 39.19 3.51
1205 1264 0.397941 TGAGTTCTTGACTGGCAGGG 59.602 55.000 20.34 6.11 39.19 4.45
1214 1273 2.492025 TGACTGGCAGGGATCCTTATT 58.508 47.619 20.34 0.00 0.00 1.40
1221 1280 4.137543 GGCAGGGATCCTTATTTGTAGTG 58.862 47.826 12.58 0.00 0.00 2.74
1229 1294 6.942576 GGATCCTTATTTGTAGTGGCATATGT 59.057 38.462 3.84 0.00 0.00 2.29
1254 1319 2.560504 CGCAGGGCAAACATATAGTGA 58.439 47.619 0.00 0.00 0.00 3.41
1255 1320 3.141398 CGCAGGGCAAACATATAGTGAT 58.859 45.455 0.00 0.00 0.00 3.06
1256 1321 4.314961 CGCAGGGCAAACATATAGTGATA 58.685 43.478 0.00 0.00 0.00 2.15
1257 1322 4.937620 CGCAGGGCAAACATATAGTGATAT 59.062 41.667 0.00 0.00 0.00 1.63
1258 1323 6.106003 CGCAGGGCAAACATATAGTGATATA 58.894 40.000 0.00 0.00 0.00 0.86
1279 1351 6.723298 ATAGATCGATTCATACCTGATCCC 57.277 41.667 0.00 0.00 36.88 3.85
1283 1355 3.069586 TCGATTCATACCTGATCCCACAC 59.930 47.826 0.00 0.00 0.00 3.82
1284 1356 2.979814 TTCATACCTGATCCCACACG 57.020 50.000 0.00 0.00 0.00 4.49
1286 1358 1.754803 TCATACCTGATCCCACACGTC 59.245 52.381 0.00 0.00 0.00 4.34
1310 1382 4.742201 CCACAGGGTGTCGGCGAG 62.742 72.222 11.20 0.00 0.00 5.03
1319 1391 0.735287 GTGTCGGCGAGTTAGGGTTC 60.735 60.000 11.20 0.00 0.00 3.62
1320 1392 1.515736 GTCGGCGAGTTAGGGTTCG 60.516 63.158 11.20 0.00 39.69 3.95
1335 1407 2.375146 GGTTCGGGCATTTGGTTAGAT 58.625 47.619 0.00 0.00 0.00 1.98
1336 1408 2.758423 GGTTCGGGCATTTGGTTAGATT 59.242 45.455 0.00 0.00 0.00 2.40
1354 1426 9.628500 GGTTAGATTTTAGATGGTACCTGAATT 57.372 33.333 14.36 0.00 0.00 2.17
1368 1440 2.159338 CCTGAATTGGCGATTGGTCTTG 60.159 50.000 4.28 0.00 0.00 3.02
1369 1441 1.818060 TGAATTGGCGATTGGTCTTGG 59.182 47.619 4.28 0.00 0.00 3.61
1370 1442 1.818674 GAATTGGCGATTGGTCTTGGT 59.181 47.619 4.28 0.00 0.00 3.67
1371 1443 1.176527 ATTGGCGATTGGTCTTGGTG 58.823 50.000 0.00 0.00 0.00 4.17
1372 1444 0.893270 TTGGCGATTGGTCTTGGTGG 60.893 55.000 0.00 0.00 0.00 4.61
1373 1445 2.700773 GGCGATTGGTCTTGGTGGC 61.701 63.158 0.00 0.00 0.00 5.01
1374 1446 1.675641 GCGATTGGTCTTGGTGGCT 60.676 57.895 0.00 0.00 0.00 4.75
1375 1447 1.244019 GCGATTGGTCTTGGTGGCTT 61.244 55.000 0.00 0.00 0.00 4.35
1376 1448 0.523072 CGATTGGTCTTGGTGGCTTG 59.477 55.000 0.00 0.00 0.00 4.01
1384 1456 4.947147 TGGTGGCTTGGTGCGGTC 62.947 66.667 0.00 0.00 44.05 4.79
1395 1467 2.096248 TGGTGCGGTCTTTTCTTGTTT 58.904 42.857 0.00 0.00 0.00 2.83
1399 1471 2.094494 TGCGGTCTTTTCTTGTTTTGCA 60.094 40.909 0.00 0.00 0.00 4.08
1471 1543 0.469494 TTCTGCTGCTGTTGGAGACA 59.531 50.000 0.00 0.00 39.83 3.41
1501 1573 5.221126 GGGCTTTGCAATTCTATCTTTCGAT 60.221 40.000 0.00 0.00 0.00 3.59
1557 1640 3.560636 ACCTGTCTTACTGTTGTGCTT 57.439 42.857 0.00 0.00 0.00 3.91
1560 1647 2.874701 CTGTCTTACTGTTGTGCTTGCT 59.125 45.455 0.00 0.00 0.00 3.91
1574 1661 4.176271 GTGCTTGCTTTCTCTTGTTGTTT 58.824 39.130 0.00 0.00 0.00 2.83
1591 1678 7.851387 TGTTGTTTATGTCATCGGCTAATTA 57.149 32.000 0.00 0.00 0.00 1.40
1603 1690 9.020813 GTCATCGGCTAATTAATTTTCCTTTTC 57.979 33.333 5.91 0.00 0.00 2.29
1605 1692 6.869695 TCGGCTAATTAATTTTCCTTTTCCC 58.130 36.000 5.91 0.00 0.00 3.97
1606 1693 6.666113 TCGGCTAATTAATTTTCCTTTTCCCT 59.334 34.615 5.91 0.00 0.00 4.20
1607 1694 6.978659 CGGCTAATTAATTTTCCTTTTCCCTC 59.021 38.462 5.91 0.00 0.00 4.30
1608 1695 7.147897 CGGCTAATTAATTTTCCTTTTCCCTCT 60.148 37.037 5.91 0.00 0.00 3.69
1616 1707 8.899887 AATTTTCCTTTTCCCTCTTCATCATA 57.100 30.769 0.00 0.00 0.00 2.15
1619 1710 9.989296 TTTTCCTTTTCCCTCTTCATCATATTA 57.011 29.630 0.00 0.00 0.00 0.98
1660 1751 2.654749 TCGGAGCAGAATATATGGCG 57.345 50.000 0.00 0.00 0.00 5.69
1680 1771 1.878953 CGATATGTTAGTGCCCCACC 58.121 55.000 0.00 0.00 34.49 4.61
1687 1778 1.068943 TTAGTGCCCCACCCTTTCCA 61.069 55.000 0.00 0.00 34.49 3.53
1699 1790 3.523564 CACCCTTTCCATTCCCTCTCTTA 59.476 47.826 0.00 0.00 0.00 2.10
1720 1813 7.572759 TCTTAATTACTTCTTTGTGTCGCTTG 58.427 34.615 0.00 0.00 0.00 4.01
1740 1833 6.306356 CGCTTGTTTGTCTCCAAATTAATCTG 59.694 38.462 0.00 0.00 42.26 2.90
1752 1849 9.319143 CTCCAAATTAATCTGAGTAACTAGTGG 57.681 37.037 0.00 5.86 0.00 4.00
1871 1970 5.794726 ATTAGTTGTTTGTGGTTAACCCC 57.205 39.130 21.97 11.43 34.29 4.95
2007 2109 0.613260 ACAAGTCCAGCGCCATTAGA 59.387 50.000 2.29 0.00 0.00 2.10
2017 2119 2.959030 AGCGCCATTAGATCTGACACTA 59.041 45.455 2.29 0.00 0.00 2.74
2351 2455 4.000988 TGTTCCTGAATCGTAAAGGCTTC 58.999 43.478 0.00 0.00 0.00 3.86
2378 2483 4.023707 GTCAAACCAGAGATGGTGAGTTTG 60.024 45.833 0.00 7.01 42.20 2.93
2385 2772 2.887152 GAGATGGTGAGTTTGCCAGTTT 59.113 45.455 0.00 0.00 38.27 2.66
2454 2874 1.748493 TGCTTCCCGATAATTTGTGCC 59.252 47.619 0.00 0.00 0.00 5.01
2455 2875 2.024414 GCTTCCCGATAATTTGTGCCT 58.976 47.619 0.00 0.00 0.00 4.75
2457 2877 3.119137 GCTTCCCGATAATTTGTGCCTTT 60.119 43.478 0.00 0.00 0.00 3.11
2458 2878 4.423732 CTTCCCGATAATTTGTGCCTTTG 58.576 43.478 0.00 0.00 0.00 2.77
2535 2974 4.136796 CTCTTTGTGTCCAGGTCAATGAA 58.863 43.478 0.00 0.00 0.00 2.57
2536 2975 4.728772 TCTTTGTGTCCAGGTCAATGAAT 58.271 39.130 0.00 0.00 0.00 2.57
2538 2977 3.507162 TGTGTCCAGGTCAATGAATGT 57.493 42.857 0.00 0.00 0.00 2.71
2581 3020 5.506151 GCCTTGTATGATTGCGATGAAATCA 60.506 40.000 2.81 2.81 45.97 2.57
2607 3046 1.742761 AACATGATGCGTCCTTGAGG 58.257 50.000 0.00 0.00 0.00 3.86
2691 3130 3.072944 ACTTTCAACAGCTCTGATGCTC 58.927 45.455 3.60 0.00 41.98 4.26
2727 3166 6.426937 CCGAAGAAGAAATTCTAGTTGGTGAA 59.573 38.462 0.00 0.00 0.00 3.18
2744 3183 3.055312 GGTGAACCGGAAGAGGTAAATCT 60.055 47.826 9.46 0.00 45.21 2.40
2781 3221 7.696992 ATATTTTGTACCGAGGAACATTTGT 57.303 32.000 0.00 0.00 0.00 2.83
2782 3222 5.838531 TTTTGTACCGAGGAACATTTGTT 57.161 34.783 0.00 0.00 41.64 2.83
2783 3223 6.939132 TTTTGTACCGAGGAACATTTGTTA 57.061 33.333 0.00 0.00 38.56 2.41
2837 3277 4.507512 GGGGGAGTGTCTTTCTTTCAGATT 60.508 45.833 0.00 0.00 0.00 2.40
3001 3441 0.109723 TTGGTTAAGGAGGCAAGCGT 59.890 50.000 0.00 0.00 0.00 5.07
3083 3523 4.214119 AGCATCAATTCATTCGATAACCCG 59.786 41.667 0.00 0.00 0.00 5.28
3155 3595 3.959991 GAAGACCGTGCAGCCCTCC 62.960 68.421 0.00 0.00 0.00 4.30
3223 3663 1.506262 CGGTTTTCATGAAGCGGGG 59.494 57.895 8.41 0.00 44.25 5.73
3345 3788 5.751028 GGTACAGCTTGCTAATACAGAGAAG 59.249 44.000 14.24 0.00 0.00 2.85
3348 3791 6.105333 ACAGCTTGCTAATACAGAGAAGAAG 58.895 40.000 0.00 0.00 0.00 2.85
3364 3808 4.594920 AGAAGAAGGTCAAGAAGTCCATCA 59.405 41.667 0.00 0.00 0.00 3.07
3396 3840 0.603569 ACGGCAGATCGAGTGAAGTT 59.396 50.000 1.78 0.00 0.00 2.66
3400 3844 0.994995 CAGATCGAGTGAAGTTGGCG 59.005 55.000 0.00 0.00 0.00 5.69
3401 3845 0.888619 AGATCGAGTGAAGTTGGCGA 59.111 50.000 0.00 0.00 35.32 5.54
3423 3867 0.251121 AACATGAATCCACCGGTGCA 60.251 50.000 29.75 21.13 0.00 4.57
3473 3917 3.404899 AGGGTTCGCGATTGTTTTTCTA 58.595 40.909 10.88 0.00 0.00 2.10
3476 3920 5.048294 AGGGTTCGCGATTGTTTTTCTATTT 60.048 36.000 10.88 0.00 0.00 1.40
3477 3921 5.631929 GGGTTCGCGATTGTTTTTCTATTTT 59.368 36.000 10.88 0.00 0.00 1.82
3501 3945 5.710099 TCTTTTTGATTGAGGGTTAGCGATT 59.290 36.000 0.00 0.00 0.00 3.34
3631 6180 5.863935 TCACAAAACAGATGATCACTAGACG 59.136 40.000 0.00 0.00 0.00 4.18
3665 6214 5.843673 ATAGAACTCTTGAAGATGCGAGA 57.156 39.130 0.00 0.00 0.00 4.04
3666 6215 4.734398 AGAACTCTTGAAGATGCGAGAT 57.266 40.909 0.00 0.00 0.00 2.75
3670 6219 1.067669 TCTTGAAGATGCGAGATCCCG 59.932 52.381 0.00 0.00 0.00 5.14
3679 6228 2.203082 CGAGATCCCGCATCCCTCA 61.203 63.158 0.00 0.00 30.71 3.86
3680 6229 1.670590 GAGATCCCGCATCCCTCAG 59.329 63.158 0.00 0.00 30.71 3.35
3681 6230 1.074926 AGATCCCGCATCCCTCAGT 60.075 57.895 0.00 0.00 30.71 3.41
3700 6269 2.515523 CCAAGATGGCAGCCGGAG 60.516 66.667 5.05 0.00 0.00 4.63
3723 6292 3.323979 GCGAGGAGACCAATAATTCCCTA 59.676 47.826 0.00 0.00 0.00 3.53
3724 6293 4.202326 GCGAGGAGACCAATAATTCCCTAA 60.202 45.833 0.00 0.00 0.00 2.69
3726 6295 5.291905 AGGAGACCAATAATTCCCTAACG 57.708 43.478 0.00 0.00 0.00 3.18
3727 6296 4.102681 AGGAGACCAATAATTCCCTAACGG 59.897 45.833 0.00 0.00 0.00 4.44
3751 6320 1.449778 GCTGCCCTAGACGAAACCC 60.450 63.158 0.00 0.00 0.00 4.11
3752 6321 1.900545 GCTGCCCTAGACGAAACCCT 61.901 60.000 0.00 0.00 0.00 4.34
3753 6322 0.175989 CTGCCCTAGACGAAACCCTC 59.824 60.000 0.00 0.00 0.00 4.30
3761 6330 3.467119 CGAAACCCTCGCGTCACG 61.467 66.667 5.77 0.00 41.49 4.35
3772 6341 2.142641 GCGTCACGAGGTTGAGAAC 58.857 57.895 0.00 0.00 0.00 3.01
3806 6375 1.162800 GCTGCCCAATCGACTGGATC 61.163 60.000 15.93 6.33 38.96 3.36
3816 6385 1.546029 TCGACTGGATCTCTGGTGTTG 59.454 52.381 0.00 0.00 0.00 3.33
3826 6395 1.955778 CTCTGGTGTTGTTGCATGGAA 59.044 47.619 0.00 0.00 0.00 3.53
3852 6421 0.532115 CAAATGGGCCGGGAGAAAAG 59.468 55.000 2.18 0.00 0.00 2.27
3853 6422 0.614697 AAATGGGCCGGGAGAAAAGG 60.615 55.000 2.18 0.00 0.00 3.11
3858 6427 1.301954 GCCGGGAGAAAAGGCCTAA 59.698 57.895 5.16 0.00 44.80 2.69
3860 6429 0.618981 CCGGGAGAAAAGGCCTAAGT 59.381 55.000 5.16 0.00 0.00 2.24
3866 6435 4.325109 GGGAGAAAAGGCCTAAGTAACCAT 60.325 45.833 5.16 0.00 0.00 3.55
3872 6441 7.454694 AGAAAAGGCCTAAGTAACCATGAAATT 59.545 33.333 5.16 0.00 0.00 1.82
3873 6442 6.775594 AAGGCCTAAGTAACCATGAAATTC 57.224 37.500 5.16 0.00 0.00 2.17
3885 6454 5.713025 ACCATGAAATTCAATTTGACTCCG 58.287 37.500 0.00 0.00 31.47 4.63
3902 6471 1.968017 CGGGTGCATGTGCTCTTGT 60.968 57.895 6.55 0.00 42.66 3.16
3905 6474 1.441515 GTGCATGTGCTCTTGTGCG 60.442 57.895 6.55 0.00 42.66 5.34
3906 6475 1.597578 TGCATGTGCTCTTGTGCGA 60.598 52.632 6.55 0.00 42.66 5.10
3907 6476 1.134075 GCATGTGCTCTTGTGCGAG 59.866 57.895 0.00 0.00 38.21 5.03
3911 6481 1.662517 TGTGCTCTTGTGCGAGAAAA 58.337 45.000 0.00 0.00 35.36 2.29
3914 6484 2.287915 GTGCTCTTGTGCGAGAAAAGAA 59.712 45.455 0.00 0.00 35.36 2.52
3967 6537 5.649782 AATTTGTGGATTCAGTCACATCC 57.350 39.130 0.00 0.00 42.51 3.51
4014 6585 7.017155 AGGATAAAAGGTTAAACATTTTGGCCT 59.983 33.333 3.32 1.76 41.41 5.19
4062 6635 8.811017 ACCAAATGTTACCATCAATTATGTCAA 58.189 29.630 0.00 0.00 33.34 3.18
4067 6640 6.894654 TGTTACCATCAATTATGTCAACCCAT 59.105 34.615 0.00 0.00 33.34 4.00
4096 6669 1.219646 TACCGACGAAACACCAAAGC 58.780 50.000 0.00 0.00 0.00 3.51
4100 6673 1.305201 GACGAAACACCAAAGCTCCA 58.695 50.000 0.00 0.00 0.00 3.86
4121 6694 5.634439 TCCATTTCGCATGAAAATTGTCAAG 59.366 36.000 1.55 0.00 46.53 3.02
4140 6713 1.818850 GCATGCTTGCGACACTAATG 58.181 50.000 11.37 0.00 39.49 1.90
4141 6714 1.818850 CATGCTTGCGACACTAATGC 58.181 50.000 0.00 0.00 0.00 3.56
4142 6715 0.374758 ATGCTTGCGACACTAATGCG 59.625 50.000 0.00 0.00 0.00 4.73
4143 6716 0.948623 TGCTTGCGACACTAATGCGT 60.949 50.000 0.00 0.00 0.00 5.24
4144 6717 0.996462 GCTTGCGACACTAATGCGTA 59.004 50.000 0.00 0.00 0.00 4.42
4145 6718 1.266891 GCTTGCGACACTAATGCGTAC 60.267 52.381 0.00 0.00 0.00 3.67
4146 6719 1.989864 CTTGCGACACTAATGCGTACA 59.010 47.619 0.00 0.00 0.00 2.90
4147 6720 2.067414 TGCGACACTAATGCGTACAA 57.933 45.000 0.00 0.00 0.00 2.41
4148 6721 2.612604 TGCGACACTAATGCGTACAAT 58.387 42.857 0.00 0.00 0.00 2.71
4149 6722 2.601314 TGCGACACTAATGCGTACAATC 59.399 45.455 0.00 0.00 0.00 2.67
4150 6723 2.601314 GCGACACTAATGCGTACAATCA 59.399 45.455 0.00 0.00 0.00 2.57
4151 6724 3.541516 GCGACACTAATGCGTACAATCAC 60.542 47.826 0.00 0.00 0.00 3.06
4152 6725 3.610677 CGACACTAATGCGTACAATCACA 59.389 43.478 0.00 0.00 0.00 3.58
4153 6726 4.090786 CGACACTAATGCGTACAATCACAA 59.909 41.667 0.00 0.00 0.00 3.33
4154 6727 5.388994 CGACACTAATGCGTACAATCACAAA 60.389 40.000 0.00 0.00 0.00 2.83
4155 6728 6.307031 ACACTAATGCGTACAATCACAAAA 57.693 33.333 0.00 0.00 0.00 2.44
4156 6729 6.730175 ACACTAATGCGTACAATCACAAAAA 58.270 32.000 0.00 0.00 0.00 1.94
4189 6762 8.880878 TTTTAAAAACATTTTACTGCTCCCTC 57.119 30.769 0.00 0.00 0.00 4.30
4190 6763 5.468540 AAAAACATTTTACTGCTCCCTCC 57.531 39.130 0.00 0.00 0.00 4.30
4191 6764 2.403252 ACATTTTACTGCTCCCTCCG 57.597 50.000 0.00 0.00 0.00 4.63
4192 6765 1.906574 ACATTTTACTGCTCCCTCCGA 59.093 47.619 0.00 0.00 0.00 4.55
4193 6766 2.505819 ACATTTTACTGCTCCCTCCGAT 59.494 45.455 0.00 0.00 0.00 4.18
4194 6767 2.981859 TTTTACTGCTCCCTCCGATC 57.018 50.000 0.00 0.00 0.00 3.69
4195 6768 1.120530 TTTACTGCTCCCTCCGATCC 58.879 55.000 0.00 0.00 0.00 3.36
4196 6769 0.032515 TTACTGCTCCCTCCGATCCA 60.033 55.000 0.00 0.00 0.00 3.41
4197 6770 0.188587 TACTGCTCCCTCCGATCCAT 59.811 55.000 0.00 0.00 0.00 3.41
4198 6771 0.188587 ACTGCTCCCTCCGATCCATA 59.811 55.000 0.00 0.00 0.00 2.74
4199 6772 1.203237 ACTGCTCCCTCCGATCCATAT 60.203 52.381 0.00 0.00 0.00 1.78
4200 6773 1.905215 CTGCTCCCTCCGATCCATATT 59.095 52.381 0.00 0.00 0.00 1.28
4201 6774 3.099905 CTGCTCCCTCCGATCCATATTA 58.900 50.000 0.00 0.00 0.00 0.98
4202 6775 2.832129 TGCTCCCTCCGATCCATATTAC 59.168 50.000 0.00 0.00 0.00 1.89
4203 6776 3.100671 GCTCCCTCCGATCCATATTACT 58.899 50.000 0.00 0.00 0.00 2.24
4204 6777 3.515901 GCTCCCTCCGATCCATATTACTT 59.484 47.826 0.00 0.00 0.00 2.24
4205 6778 4.621747 GCTCCCTCCGATCCATATTACTTG 60.622 50.000 0.00 0.00 0.00 3.16
4206 6779 4.489737 TCCCTCCGATCCATATTACTTGT 58.510 43.478 0.00 0.00 0.00 3.16
4207 6780 4.527038 TCCCTCCGATCCATATTACTTGTC 59.473 45.833 0.00 0.00 0.00 3.18
4208 6781 4.528596 CCCTCCGATCCATATTACTTGTCT 59.471 45.833 0.00 0.00 0.00 3.41
4209 6782 5.012148 CCCTCCGATCCATATTACTTGTCTT 59.988 44.000 0.00 0.00 0.00 3.01
4210 6783 6.210784 CCCTCCGATCCATATTACTTGTCTTA 59.789 42.308 0.00 0.00 0.00 2.10
4211 6784 7.093289 CCCTCCGATCCATATTACTTGTCTTAT 60.093 40.741 0.00 0.00 0.00 1.73
4212 6785 8.967918 CCTCCGATCCATATTACTTGTCTTATA 58.032 37.037 0.00 0.00 0.00 0.98
4214 6787 9.529823 TCCGATCCATATTACTTGTCTTATAGT 57.470 33.333 0.00 0.00 0.00 2.12
4270 6843 9.823647 AATATGTCTAGTTACATCCTTGTCAAG 57.176 33.333 5.53 5.53 40.52 3.02
4271 6844 6.911250 TGTCTAGTTACATCCTTGTCAAGA 57.089 37.500 14.42 0.96 37.28 3.02
4272 6845 6.688578 TGTCTAGTTACATCCTTGTCAAGAC 58.311 40.000 14.42 3.15 37.28 3.01
4273 6846 6.266786 TGTCTAGTTACATCCTTGTCAAGACA 59.733 38.462 14.42 0.00 37.60 3.41
4302 6875 8.531982 TCTAAGACAAATAATATGGATCGGAGG 58.468 37.037 0.00 0.00 0.00 4.30
4303 6876 6.054860 AGACAAATAATATGGATCGGAGGG 57.945 41.667 0.00 0.00 0.00 4.30
4304 6877 5.785423 AGACAAATAATATGGATCGGAGGGA 59.215 40.000 0.00 0.00 0.00 4.20
4305 6878 6.054860 ACAAATAATATGGATCGGAGGGAG 57.945 41.667 0.00 0.00 0.00 4.30
4306 6879 5.548056 ACAAATAATATGGATCGGAGGGAGT 59.452 40.000 0.00 0.00 0.00 3.85
4307 6880 6.729100 ACAAATAATATGGATCGGAGGGAGTA 59.271 38.462 0.00 0.00 0.00 2.59
4308 6881 6.793505 AATAATATGGATCGGAGGGAGTAC 57.206 41.667 0.00 0.00 0.00 2.73
4309 6882 4.405756 AATATGGATCGGAGGGAGTACT 57.594 45.455 0.00 0.00 0.00 2.73
4310 6883 2.777459 ATGGATCGGAGGGAGTACTT 57.223 50.000 0.00 0.00 0.00 2.24
4311 6884 2.544844 TGGATCGGAGGGAGTACTTT 57.455 50.000 0.00 0.00 0.00 2.66
4312 6885 2.829023 TGGATCGGAGGGAGTACTTTT 58.171 47.619 0.00 0.00 0.00 2.27
4313 6886 3.178865 TGGATCGGAGGGAGTACTTTTT 58.821 45.455 0.00 0.00 0.00 1.94
4334 6907 4.433186 TTTGAATTACTGTTCATGCGGG 57.567 40.909 0.00 0.00 37.88 6.13
4335 6908 3.342377 TGAATTACTGTTCATGCGGGA 57.658 42.857 0.00 0.00 33.41 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.047179 GGTGAGAGACGGCAACCC 60.047 66.667 0.00 0.00 0.00 4.11
2 3 2.047179 GGGTGAGAGACGGCAACC 60.047 66.667 0.00 0.00 34.24 3.77
7 8 2.678934 TTCGGGGGTGAGAGACGG 60.679 66.667 0.00 0.00 0.00 4.79
14 15 3.935024 CGATCTCTTCGGGGGTGA 58.065 61.111 0.00 0.00 44.28 4.02
24 25 2.496817 GGCTTGTCGGCGATCTCT 59.503 61.111 14.79 0.00 0.00 3.10
31 32 0.317479 ATATAGGTCGGCTTGTCGGC 59.683 55.000 0.00 0.00 0.00 5.54
33 34 1.611977 TGGATATAGGTCGGCTTGTCG 59.388 52.381 0.00 0.00 0.00 4.35
35 36 4.321750 CGTATTGGATATAGGTCGGCTTGT 60.322 45.833 0.00 0.00 0.00 3.16
45 46 4.304110 ACCGTTGTGCGTATTGGATATAG 58.696 43.478 0.00 0.00 39.32 1.31
47 48 3.128349 GACCGTTGTGCGTATTGGATAT 58.872 45.455 0.00 0.00 39.32 1.63
52 53 0.719465 GAGGACCGTTGTGCGTATTG 59.281 55.000 0.00 0.00 37.97 1.90
54 55 1.217244 GGAGGACCGTTGTGCGTAT 59.783 57.895 0.00 0.00 37.97 3.06
56 57 1.874345 CTAGGAGGACCGTTGTGCGT 61.874 60.000 0.00 0.00 41.83 5.24
65 66 3.155167 CGGCCCACTAGGAGGACC 61.155 72.222 0.00 1.96 38.24 4.46
66 67 3.851128 GCGGCCCACTAGGAGGAC 61.851 72.222 0.00 0.29 38.24 3.85
69 70 2.187946 CTTGCGGCCCACTAGGAG 59.812 66.667 0.00 0.00 38.24 3.69
70 71 3.399181 CCTTGCGGCCCACTAGGA 61.399 66.667 13.63 0.00 38.24 2.94
73 74 2.033448 CAACCTTGCGGCCCACTA 59.967 61.111 0.00 0.00 0.00 2.74
74 75 4.974721 CCAACCTTGCGGCCCACT 62.975 66.667 0.00 0.00 0.00 4.00
90 91 0.543749 AGTAGAAGCATGAGGTGGCC 59.456 55.000 0.00 0.00 0.00 5.36
93 94 1.804372 GCGGAGTAGAAGCATGAGGTG 60.804 57.143 0.00 0.00 0.00 4.00
109 110 2.123251 GGAGATCCTCCTGGCGGA 60.123 66.667 8.06 8.06 46.41 5.54
121 122 1.152440 CTAGGGCGAGGTGGGAGAT 60.152 63.158 0.00 0.00 0.00 2.75
155 156 2.202797 CTCCGTGCATGACCTCCG 60.203 66.667 7.72 0.00 0.00 4.63
160 161 0.249657 GATCCTCCTCCGTGCATGAC 60.250 60.000 7.72 0.00 0.00 3.06
163 164 0.911769 TTTGATCCTCCTCCGTGCAT 59.088 50.000 0.00 0.00 0.00 3.96
167 168 1.279271 CAACCTTTGATCCTCCTCCGT 59.721 52.381 0.00 0.00 0.00 4.69
175 176 1.535462 CACCACGACAACCTTTGATCC 59.465 52.381 0.00 0.00 0.00 3.36
177 178 0.951558 GCACCACGACAACCTTTGAT 59.048 50.000 0.00 0.00 0.00 2.57
181 182 1.095228 CACTGCACCACGACAACCTT 61.095 55.000 0.00 0.00 0.00 3.50
183 184 3.022287 CACTGCACCACGACAACC 58.978 61.111 0.00 0.00 0.00 3.77
188 189 3.932580 GATCCGCACTGCACCACGA 62.933 63.158 1.11 0.00 0.00 4.35
189 190 3.490759 GATCCGCACTGCACCACG 61.491 66.667 1.11 0.00 0.00 4.94
218 219 4.614673 CGCTATTTGAATGCGGCC 57.385 55.556 0.00 0.00 45.07 6.13
236 237 0.107508 TGCTTAGCCTGATCAGCACC 60.108 55.000 17.76 7.59 37.35 5.01
238 239 0.463295 GCTGCTTAGCCTGATCAGCA 60.463 55.000 17.76 10.81 46.64 4.41
239 240 1.497223 CGCTGCTTAGCCTGATCAGC 61.497 60.000 17.76 12.53 44.68 4.26
244 245 2.592993 AACCCGCTGCTTAGCCTGA 61.593 57.895 0.29 0.00 0.00 3.86
279 280 2.093658 GGCGGATGAGAAACTTACTCCA 60.094 50.000 0.00 0.00 33.95 3.86
285 286 1.003839 TGCGGCGGATGAGAAACTT 60.004 52.632 9.78 0.00 0.00 2.66
286 287 1.741770 GTGCGGCGGATGAGAAACT 60.742 57.895 9.78 0.00 0.00 2.66
287 288 1.298859 AAGTGCGGCGGATGAGAAAC 61.299 55.000 9.78 0.00 0.00 2.78
295 296 0.519519 CATTAAACAAGTGCGGCGGA 59.480 50.000 9.78 1.34 0.00 5.54
296 297 0.239879 ACATTAAACAAGTGCGGCGG 59.760 50.000 9.78 0.00 0.00 6.13
301 302 3.059665 GCTTGCCAACATTAAACAAGTGC 60.060 43.478 0.00 0.00 39.86 4.40
315 316 2.664851 CGTCTGTCCGCTTGCCAA 60.665 61.111 0.00 0.00 0.00 4.52
316 317 4.680237 CCGTCTGTCCGCTTGCCA 62.680 66.667 0.00 0.00 0.00 4.92
339 340 4.080356 AGGGCTATCTACTGCATTCAAACA 60.080 41.667 0.00 0.00 0.00 2.83
346 347 1.132721 TGGGAGGGCTATCTACTGCAT 60.133 52.381 0.00 0.00 0.00 3.96
350 351 2.085934 AGGATGGGAGGGCTATCTACT 58.914 52.381 0.00 0.00 0.00 2.57
366 367 3.073209 TGAGCGGAGTGACTAGATAGGAT 59.927 47.826 0.00 0.00 0.00 3.24
381 382 0.970937 CCAACTCCTACCTGAGCGGA 60.971 60.000 0.00 0.00 35.72 5.54
382 383 1.258445 ACCAACTCCTACCTGAGCGG 61.258 60.000 0.00 0.00 35.72 5.52
383 384 0.608640 AACCAACTCCTACCTGAGCG 59.391 55.000 0.00 0.00 35.72 5.03
388 389 1.900486 CCGAGAAACCAACTCCTACCT 59.100 52.381 0.00 0.00 0.00 3.08
390 391 2.670509 CGACCGAGAAACCAACTCCTAC 60.671 54.545 0.00 0.00 0.00 3.18
393 394 1.289800 GCGACCGAGAAACCAACTCC 61.290 60.000 0.00 0.00 0.00 3.85
398 399 2.357034 GCAGCGACCGAGAAACCA 60.357 61.111 0.00 0.00 0.00 3.67
413 414 0.604243 ACCGACATTAAACAGGCGCA 60.604 50.000 10.83 0.00 0.00 6.09
416 417 3.560068 CCATCTACCGACATTAAACAGGC 59.440 47.826 0.00 0.00 0.00 4.85
428 429 1.820906 CCGTCCGTCCATCTACCGA 60.821 63.158 0.00 0.00 0.00 4.69
431 432 2.031360 CTCCCGTCCGTCCATCTAC 58.969 63.158 0.00 0.00 0.00 2.59
434 435 4.222847 GGCTCCCGTCCGTCCATC 62.223 72.222 0.00 0.00 0.00 3.51
438 439 3.236003 AAACTGGCTCCCGTCCGTC 62.236 63.158 0.00 0.00 0.00 4.79
439 440 3.239253 AAACTGGCTCCCGTCCGT 61.239 61.111 0.00 0.00 0.00 4.69
440 441 2.725203 TTCAAACTGGCTCCCGTCCG 62.725 60.000 0.00 0.00 0.00 4.79
441 442 0.322546 ATTCAAACTGGCTCCCGTCC 60.323 55.000 0.00 0.00 0.00 4.79
442 443 0.804989 CATTCAAACTGGCTCCCGTC 59.195 55.000 0.00 0.00 0.00 4.79
443 444 1.244019 GCATTCAAACTGGCTCCCGT 61.244 55.000 0.00 0.00 0.00 5.28
444 445 1.508088 GCATTCAAACTGGCTCCCG 59.492 57.895 0.00 0.00 0.00 5.14
445 446 1.508088 CGCATTCAAACTGGCTCCC 59.492 57.895 0.00 0.00 0.00 4.30
446 447 1.244019 ACCGCATTCAAACTGGCTCC 61.244 55.000 0.00 0.00 0.00 4.70
447 448 1.398390 CTACCGCATTCAAACTGGCTC 59.602 52.381 0.00 0.00 0.00 4.70
448 449 1.003118 TCTACCGCATTCAAACTGGCT 59.997 47.619 0.00 0.00 0.00 4.75
449 450 1.448985 TCTACCGCATTCAAACTGGC 58.551 50.000 0.00 0.00 0.00 4.85
450 451 3.809832 CCTATCTACCGCATTCAAACTGG 59.190 47.826 0.00 0.00 0.00 4.00
451 452 3.248602 GCCTATCTACCGCATTCAAACTG 59.751 47.826 0.00 0.00 0.00 3.16
452 453 3.118408 TGCCTATCTACCGCATTCAAACT 60.118 43.478 0.00 0.00 0.00 2.66
453 454 3.202906 TGCCTATCTACCGCATTCAAAC 58.797 45.455 0.00 0.00 0.00 2.93
454 455 3.552132 TGCCTATCTACCGCATTCAAA 57.448 42.857 0.00 0.00 0.00 2.69
455 456 3.664107 GATGCCTATCTACCGCATTCAA 58.336 45.455 0.00 0.00 43.09 2.69
456 457 2.352715 CGATGCCTATCTACCGCATTCA 60.353 50.000 0.00 0.00 43.09 2.57
462 463 4.891566 GGCGATGCCTATCTACCG 57.108 61.111 0.00 0.00 46.69 4.02
472 473 2.802816 CACTTAATAGGACAGGCGATGC 59.197 50.000 0.00 0.00 0.00 3.91
488 489 0.753867 TGTCGGAGCAACACCACTTA 59.246 50.000 0.00 0.00 0.00 2.24
494 495 1.601903 TGTTCAATGTCGGAGCAACAC 59.398 47.619 0.00 0.00 0.00 3.32
495 496 1.872952 CTGTTCAATGTCGGAGCAACA 59.127 47.619 0.00 0.00 0.00 3.33
497 498 2.143122 GTCTGTTCAATGTCGGAGCAA 58.857 47.619 0.00 0.00 0.00 3.91
504 505 2.731976 GTCTCCGTGTCTGTTCAATGTC 59.268 50.000 0.00 0.00 0.00 3.06
505 506 2.548067 GGTCTCCGTGTCTGTTCAATGT 60.548 50.000 0.00 0.00 0.00 2.71
533 534 1.503542 GCATTGAAGAGGTGTGCCG 59.496 57.895 0.00 0.00 40.50 5.69
539 540 1.078143 GAGCCGGCATTGAAGAGGT 60.078 57.895 31.54 2.38 0.00 3.85
540 541 1.821332 GGAGCCGGCATTGAAGAGG 60.821 63.158 31.54 0.00 0.00 3.69
541 542 1.821332 GGGAGCCGGCATTGAAGAG 60.821 63.158 31.54 0.00 0.00 2.85
552 553 2.818132 GACCTCTCATGGGAGCCG 59.182 66.667 17.80 7.19 41.13 5.52
557 558 2.105128 GACGCGACCTCTCATGGG 59.895 66.667 15.93 0.00 0.00 4.00
558 559 2.105128 GGACGCGACCTCTCATGG 59.895 66.667 20.46 0.00 0.00 3.66
600 601 3.905678 CGCGCCCTCTACTCCCAG 61.906 72.222 0.00 0.00 0.00 4.45
601 602 4.753662 ACGCGCCCTCTACTCCCA 62.754 66.667 5.73 0.00 0.00 4.37
602 603 4.208686 CACGCGCCCTCTACTCCC 62.209 72.222 5.73 0.00 0.00 4.30
605 606 4.436998 GCACACGCGCCCTCTACT 62.437 66.667 5.73 0.00 0.00 2.57
616 635 0.591170 AAAAACATCTCCGGCACACG 59.409 50.000 0.00 0.00 43.80 4.49
631 650 0.778720 ACCCCGGTACCATCCAAAAA 59.221 50.000 13.54 0.00 0.00 1.94
637 656 1.969862 CCGATACCCCGGTACCATC 59.030 63.158 13.54 5.92 44.23 3.51
651 670 0.104304 GACCCATGTAAGCGTCCGAT 59.896 55.000 0.00 0.00 0.00 4.18
653 672 1.520787 GGACCCATGTAAGCGTCCG 60.521 63.158 0.00 0.00 35.78 4.79
655 674 1.520787 CCGGACCCATGTAAGCGTC 60.521 63.158 0.00 0.00 0.00 5.19
680 704 0.961753 GCAAACTAGGGCAGCTTTGT 59.038 50.000 6.08 0.00 32.45 2.83
714 738 3.305335 GCACCAGTTCAATTGTCCGAATT 60.305 43.478 5.13 0.00 0.00 2.17
733 757 0.613260 TACCCCATCTGACTGTGCAC 59.387 55.000 10.75 10.75 0.00 4.57
735 759 0.905357 AGTACCCCATCTGACTGTGC 59.095 55.000 0.00 0.00 0.00 4.57
738 762 1.902508 ACACAGTACCCCATCTGACTG 59.097 52.381 0.00 0.00 43.97 3.51
739 763 2.303022 CAACACAGTACCCCATCTGACT 59.697 50.000 0.00 0.00 35.84 3.41
741 765 1.628340 CCAACACAGTACCCCATCTGA 59.372 52.381 0.00 0.00 35.84 3.27
754 778 8.553153 TCTGGAGGTAATTTATTATCCAACACA 58.447 33.333 6.38 0.00 33.42 3.72
755 779 8.837389 GTCTGGAGGTAATTTATTATCCAACAC 58.163 37.037 6.38 3.85 33.42 3.32
762 790 8.934697 TGTAGCTGTCTGGAGGTAATTTATTAT 58.065 33.333 0.00 0.00 0.00 1.28
764 792 7.195374 TGTAGCTGTCTGGAGGTAATTTATT 57.805 36.000 0.00 0.00 0.00 1.40
766 794 6.183360 GGATGTAGCTGTCTGGAGGTAATTTA 60.183 42.308 0.00 0.00 0.00 1.40
768 796 4.101741 GGATGTAGCTGTCTGGAGGTAATT 59.898 45.833 0.00 0.00 0.00 1.40
774 802 0.387202 CCGGATGTAGCTGTCTGGAG 59.613 60.000 14.88 0.00 42.38 3.86
776 804 0.103208 GTCCGGATGTAGCTGTCTGG 59.897 60.000 7.81 14.17 41.37 3.86
780 808 1.379443 TCCGTCCGGATGTAGCTGT 60.379 57.895 22.05 0.00 39.76 4.40
790 818 0.039437 CTCCAATATCGTCCGTCCGG 60.039 60.000 0.00 0.00 0.00 5.14
791 819 0.949397 TCTCCAATATCGTCCGTCCG 59.051 55.000 0.00 0.00 0.00 4.79
793 821 3.119566 GGGTATCTCCAATATCGTCCGTC 60.120 52.174 0.00 0.00 38.11 4.79
794 822 2.824341 GGGTATCTCCAATATCGTCCGT 59.176 50.000 0.00 0.00 38.11 4.69
795 823 3.090037 AGGGTATCTCCAATATCGTCCG 58.910 50.000 0.00 0.00 38.11 4.79
796 824 5.950549 TCTTAGGGTATCTCCAATATCGTCC 59.049 44.000 0.00 0.00 38.11 4.79
797 825 7.201839 GGATCTTAGGGTATCTCCAATATCGTC 60.202 44.444 0.00 0.00 38.11 4.20
798 826 6.608002 GGATCTTAGGGTATCTCCAATATCGT 59.392 42.308 0.00 0.00 38.11 3.73
799 827 6.041069 GGGATCTTAGGGTATCTCCAATATCG 59.959 46.154 0.00 0.00 38.11 2.92
800 828 6.903534 TGGGATCTTAGGGTATCTCCAATATC 59.096 42.308 0.00 0.00 38.11 1.63
807 852 4.344390 ACGTTTGGGATCTTAGGGTATCTC 59.656 45.833 0.00 0.00 0.00 2.75
816 861 6.488683 AGATTTTGTCAACGTTTGGGATCTTA 59.511 34.615 0.00 0.00 0.00 2.10
819 864 5.121221 AGATTTTGTCAACGTTTGGGATC 57.879 39.130 0.00 0.00 0.00 3.36
873 918 4.533311 ACGGGGTCTTGTAGATCCTAAAAA 59.467 41.667 5.99 0.00 45.03 1.94
874 919 4.098894 ACGGGGTCTTGTAGATCCTAAAA 58.901 43.478 5.99 0.00 45.03 1.52
875 920 3.716431 ACGGGGTCTTGTAGATCCTAAA 58.284 45.455 5.99 0.00 45.03 1.85
876 921 3.393426 ACGGGGTCTTGTAGATCCTAA 57.607 47.619 5.99 0.00 45.03 2.69
877 922 3.028850 CAACGGGGTCTTGTAGATCCTA 58.971 50.000 5.99 0.00 45.03 2.94
878 923 1.831736 CAACGGGGTCTTGTAGATCCT 59.168 52.381 5.99 0.00 45.03 3.24
879 924 1.829222 TCAACGGGGTCTTGTAGATCC 59.171 52.381 0.00 0.00 44.95 3.36
880 925 3.604875 TTCAACGGGGTCTTGTAGATC 57.395 47.619 0.00 0.00 0.00 2.75
881 926 4.202430 ACTTTTCAACGGGGTCTTGTAGAT 60.202 41.667 0.00 0.00 0.00 1.98
882 927 3.135167 ACTTTTCAACGGGGTCTTGTAGA 59.865 43.478 0.00 0.00 0.00 2.59
883 928 3.473625 ACTTTTCAACGGGGTCTTGTAG 58.526 45.455 0.00 0.00 0.00 2.74
912 957 4.100498 AGTCGAGTAGGTTTTTGTCTTCCA 59.900 41.667 0.00 0.00 0.00 3.53
913 958 4.629092 AGTCGAGTAGGTTTTTGTCTTCC 58.371 43.478 0.00 0.00 0.00 3.46
918 963 2.363359 ACGGAGTCGAGTAGGTTTTTGT 59.637 45.455 0.00 0.00 29.74 2.83
924 969 2.479566 TGTTACGGAGTCGAGTAGGT 57.520 50.000 0.00 0.00 43.93 3.08
930 975 1.200716 GTGGTGATGTTACGGAGTCGA 59.799 52.381 0.00 0.00 43.93 4.20
937 982 2.394136 GCGCGTGGTGATGTTACG 59.606 61.111 8.43 0.00 40.52 3.18
969 1014 2.444421 GGAGACGAGAGGAGGTTAACA 58.556 52.381 8.10 0.00 0.00 2.41
971 1016 1.341778 GGGGAGACGAGAGGAGGTTAA 60.342 57.143 0.00 0.00 0.00 2.01
972 1017 0.258194 GGGGAGACGAGAGGAGGTTA 59.742 60.000 0.00 0.00 0.00 2.85
979 1024 1.000486 TGGAAGGGGGAGACGAGAG 60.000 63.158 0.00 0.00 0.00 3.20
980 1025 1.305046 GTGGAAGGGGGAGACGAGA 60.305 63.158 0.00 0.00 0.00 4.04
984 1029 0.976073 TCATCGTGGAAGGGGGAGAC 60.976 60.000 0.00 0.00 0.00 3.36
990 1035 1.153289 CAGCCTCATCGTGGAAGGG 60.153 63.158 0.00 0.00 0.00 3.95
997 1052 3.071206 AGGACGCAGCCTCATCGT 61.071 61.111 0.00 0.00 39.33 3.73
1104 1159 1.269309 GCAGACGGCTCACCTATACTG 60.269 57.143 0.00 0.00 40.25 2.74
1133 1188 3.989600 TCAGAGAGGGAGGATGAGATT 57.010 47.619 0.00 0.00 0.00 2.40
1136 1191 2.899256 GGATTCAGAGAGGGAGGATGAG 59.101 54.545 0.00 0.00 0.00 2.90
1163 1218 0.106268 TCAAGTTTTCCCTGCTGCCA 60.106 50.000 0.00 0.00 0.00 4.92
1167 1222 4.077822 CTCAAGATCAAGTTTTCCCTGCT 58.922 43.478 0.00 0.00 0.00 4.24
1168 1223 3.823304 ACTCAAGATCAAGTTTTCCCTGC 59.177 43.478 0.00 0.00 0.00 4.85
1170 1225 5.946486 AGAACTCAAGATCAAGTTTTCCCT 58.054 37.500 8.87 1.29 35.90 4.20
1172 1227 7.012799 AGTCAAGAACTCAAGATCAAGTTTTCC 59.987 37.037 8.87 0.00 35.90 3.13
1191 1250 0.252881 AGGATCCCTGCCAGTCAAGA 60.253 55.000 8.55 0.00 29.57 3.02
1192 1251 0.622665 AAGGATCCCTGCCAGTCAAG 59.377 55.000 8.55 0.00 32.13 3.02
1193 1252 1.965414 TAAGGATCCCTGCCAGTCAA 58.035 50.000 8.55 0.00 32.13 3.18
1194 1253 2.196742 ATAAGGATCCCTGCCAGTCA 57.803 50.000 8.55 0.00 32.13 3.41
1195 1254 3.217626 CAAATAAGGATCCCTGCCAGTC 58.782 50.000 8.55 0.00 32.13 3.51
1196 1255 2.582636 ACAAATAAGGATCCCTGCCAGT 59.417 45.455 8.55 0.00 32.13 4.00
1197 1256 3.303351 ACAAATAAGGATCCCTGCCAG 57.697 47.619 8.55 0.00 32.13 4.85
1198 1257 3.785887 ACTACAAATAAGGATCCCTGCCA 59.214 43.478 8.55 0.00 32.13 4.92
1199 1258 4.137543 CACTACAAATAAGGATCCCTGCC 58.862 47.826 8.55 0.00 32.13 4.85
1205 1264 7.986085 ACATATGCCACTACAAATAAGGATC 57.014 36.000 1.58 0.00 0.00 3.36
1237 1302 8.417106 CGATCTATATCACTATATGTTTGCCCT 58.583 37.037 0.00 0.00 30.72 5.19
1252 1317 9.072375 GGATCAGGTATGAATCGATCTATATCA 57.928 37.037 0.00 0.00 39.39 2.15
1253 1318 8.519526 GGGATCAGGTATGAATCGATCTATATC 58.480 40.741 0.00 1.27 39.39 1.63
1254 1319 8.007153 TGGGATCAGGTATGAATCGATCTATAT 58.993 37.037 0.00 0.00 39.39 0.86
1255 1320 7.285629 GTGGGATCAGGTATGAATCGATCTATA 59.714 40.741 0.00 0.00 39.39 1.31
1256 1321 6.097554 GTGGGATCAGGTATGAATCGATCTAT 59.902 42.308 0.00 0.00 39.39 1.98
1257 1322 5.419155 GTGGGATCAGGTATGAATCGATCTA 59.581 44.000 0.00 0.00 39.39 1.98
1258 1323 4.221703 GTGGGATCAGGTATGAATCGATCT 59.778 45.833 0.00 0.00 39.39 2.75
1272 1344 1.673033 GGTTGAGACGTGTGGGATCAG 60.673 57.143 0.00 0.00 0.00 2.90
1273 1345 0.320374 GGTTGAGACGTGTGGGATCA 59.680 55.000 0.00 0.00 0.00 2.92
1279 1351 0.880278 CTGTGGGGTTGAGACGTGTG 60.880 60.000 0.00 0.00 0.00 3.82
1301 1373 1.588082 GAACCCTAACTCGCCGACA 59.412 57.895 0.00 0.00 0.00 4.35
1304 1376 2.202703 CCGAACCCTAACTCGCCG 60.203 66.667 0.00 0.00 33.70 6.46
1308 1380 1.743394 CAAATGCCCGAACCCTAACTC 59.257 52.381 0.00 0.00 0.00 3.01
1310 1382 0.815095 CCAAATGCCCGAACCCTAAC 59.185 55.000 0.00 0.00 0.00 2.34
1319 1391 5.828299 TCTAAAATCTAACCAAATGCCCG 57.172 39.130 0.00 0.00 0.00 6.13
1320 1392 6.098266 ACCATCTAAAATCTAACCAAATGCCC 59.902 38.462 0.00 0.00 0.00 5.36
1335 1407 4.638421 CGCCAATTCAGGTACCATCTAAAA 59.362 41.667 15.94 0.00 0.00 1.52
1336 1408 4.080807 TCGCCAATTCAGGTACCATCTAAA 60.081 41.667 15.94 0.82 0.00 1.85
1354 1426 1.303236 CCACCAAGACCAATCGCCA 60.303 57.895 0.00 0.00 0.00 5.69
1368 1440 4.643387 AGACCGCACCAAGCCACC 62.643 66.667 0.00 0.00 41.38 4.61
1369 1441 1.734388 AAAAGACCGCACCAAGCCAC 61.734 55.000 0.00 0.00 41.38 5.01
1370 1442 1.452145 GAAAAGACCGCACCAAGCCA 61.452 55.000 0.00 0.00 41.38 4.75
1371 1443 1.172812 AGAAAAGACCGCACCAAGCC 61.173 55.000 0.00 0.00 41.38 4.35
1372 1444 0.668535 AAGAAAAGACCGCACCAAGC 59.331 50.000 0.00 0.00 40.87 4.01
1373 1445 1.676006 ACAAGAAAAGACCGCACCAAG 59.324 47.619 0.00 0.00 0.00 3.61
1374 1446 1.757682 ACAAGAAAAGACCGCACCAA 58.242 45.000 0.00 0.00 0.00 3.67
1375 1447 1.757682 AACAAGAAAAGACCGCACCA 58.242 45.000 0.00 0.00 0.00 4.17
1376 1448 2.857748 CAAAACAAGAAAAGACCGCACC 59.142 45.455 0.00 0.00 0.00 5.01
1384 1456 5.535043 AAGCTTGTGCAAAACAAGAAAAG 57.465 34.783 19.57 0.00 44.97 2.27
1404 1476 2.095532 GCTGCATGACAAGCTCAGTAAG 59.904 50.000 4.08 0.00 30.20 2.34
1453 1525 0.250038 GTGTCTCCAACAGCAGCAGA 60.250 55.000 0.00 0.00 38.97 4.26
1471 1543 1.228862 AATTGCAAAGCCCGAGGGT 60.229 52.632 1.71 0.00 37.65 4.34
1501 1573 1.133136 GGTAGATAGAGCTGGACCCCA 60.133 57.143 0.00 0.00 0.00 4.96
1542 1625 4.199310 AGAAAGCAAGCACAACAGTAAGA 58.801 39.130 0.00 0.00 0.00 2.10
1546 1629 2.648059 AGAGAAAGCAAGCACAACAGT 58.352 42.857 0.00 0.00 0.00 3.55
1550 1633 3.193267 ACAACAAGAGAAAGCAAGCACAA 59.807 39.130 0.00 0.00 0.00 3.33
1557 1640 6.691754 TGACATAAACAACAAGAGAAAGCA 57.308 33.333 0.00 0.00 0.00 3.91
1560 1647 6.567701 GCCGATGACATAAACAACAAGAGAAA 60.568 38.462 0.00 0.00 0.00 2.52
1574 1661 8.918202 AGGAAAATTAATTAGCCGATGACATA 57.082 30.769 0.01 0.00 0.00 2.29
1591 1678 7.803487 ATGATGAAGAGGGAAAAGGAAAATT 57.197 32.000 0.00 0.00 0.00 1.82
1619 1710 5.980116 CGAAGTTCGACCAGATATTCTGAAT 59.020 40.000 20.58 8.14 44.10 2.57
1660 1751 1.226746 GTGGGGCACTAACATATCGC 58.773 55.000 0.00 0.00 0.00 4.58
1680 1771 7.578203 AGTAATTAAGAGAGGGAATGGAAAGG 58.422 38.462 0.00 0.00 0.00 3.11
1687 1778 9.454859 CACAAAGAAGTAATTAAGAGAGGGAAT 57.545 33.333 0.00 0.00 0.00 3.01
1699 1790 5.751243 ACAAGCGACACAAAGAAGTAATT 57.249 34.783 0.00 0.00 0.00 1.40
1740 1833 4.106197 CGATGCAAGACCACTAGTTACTC 58.894 47.826 0.00 0.00 0.00 2.59
1752 1849 4.267690 TGATAATCACGAACGATGCAAGAC 59.732 41.667 0.14 0.00 0.00 3.01
1836 1933 7.436080 CACAAACAACTAATTCAGAACAAGCAT 59.564 33.333 0.00 0.00 0.00 3.79
1842 1941 9.016623 GTTAACCACAAACAACTAATTCAGAAC 57.983 33.333 0.00 0.00 0.00 3.01
1871 1970 4.747540 TCATGTGATGTTTCTTCAACGG 57.252 40.909 0.00 0.00 38.36 4.44
1977 2079 2.550180 GCTGGACTTGTCCTTGAACTTC 59.450 50.000 19.11 0.00 0.00 3.01
2007 2109 4.607293 TCTGCAAACACTAGTGTCAGAT 57.393 40.909 28.72 14.72 44.13 2.90
2017 2119 1.133976 AGACAGCCTTCTGCAAACACT 60.134 47.619 0.00 0.00 44.10 3.55
2378 2483 1.518903 GCACTCACTGGGAAACTGGC 61.519 60.000 0.00 0.00 0.00 4.85
2385 2772 2.224159 GGAAGGGCACTCACTGGGA 61.224 63.158 0.00 0.00 0.00 4.37
2487 2925 3.119280 TGCTTCGTCACCGATGAGAAATA 60.119 43.478 2.67 0.00 43.80 1.40
2492 2930 1.325640 CATTGCTTCGTCACCGATGAG 59.674 52.381 2.67 0.00 43.80 2.90
2495 2933 0.391661 AGCATTGCTTCGTCACCGAT 60.392 50.000 5.03 0.00 43.80 4.18
2515 2954 4.279169 ACATTCATTGACCTGGACACAAAG 59.721 41.667 0.00 1.72 0.00 2.77
2535 2974 4.142534 GCACATGCTGACAGAACAATACAT 60.143 41.667 6.65 0.00 38.21 2.29
2536 2975 3.189080 GCACATGCTGACAGAACAATACA 59.811 43.478 6.65 0.00 38.21 2.29
2538 2977 2.749076 GGCACATGCTGACAGAACAATA 59.251 45.455 6.65 0.00 41.70 1.90
2581 3020 3.679389 AGGACGCATCATGTTTCTTCTT 58.321 40.909 0.00 0.00 0.00 2.52
2691 3130 8.887717 AGAATTTCTTCTTCGGAGAAACATATG 58.112 33.333 7.73 0.00 45.90 1.78
2727 3166 8.368668 CAGATATTAAGATTTACCTCTTCCGGT 58.631 37.037 0.00 0.00 41.10 5.28
2759 3199 6.399639 AACAAATGTTCCTCGGTACAAAAT 57.600 33.333 0.00 0.00 31.64 1.82
2760 3200 5.838531 AACAAATGTTCCTCGGTACAAAA 57.161 34.783 0.00 0.00 31.64 2.44
2769 3209 7.926018 ACAAGTTTCCAATAACAAATGTTCCTC 59.074 33.333 1.37 0.00 39.31 3.71
2773 3213 8.785329 ACAACAAGTTTCCAATAACAAATGTT 57.215 26.923 4.01 4.01 41.73 2.71
2781 3221 6.197364 ACACGAACAACAAGTTTCCAATAA 57.803 33.333 0.00 0.00 41.51 1.40
2782 3222 5.821516 ACACGAACAACAAGTTTCCAATA 57.178 34.783 0.00 0.00 41.51 1.90
2783 3223 4.712122 ACACGAACAACAAGTTTCCAAT 57.288 36.364 0.00 0.00 41.51 3.16
2855 3295 3.567164 GTGCATCATCCTGGAAATTCGAT 59.433 43.478 0.00 0.00 0.00 3.59
2861 3301 1.003003 TCGTGTGCATCATCCTGGAAA 59.997 47.619 0.00 0.00 0.00 3.13
2999 3439 1.668047 GGTACCGGAGAGAAACACACG 60.668 57.143 9.46 0.00 0.00 4.49
3001 3441 0.971386 GGGTACCGGAGAGAAACACA 59.029 55.000 9.46 0.00 40.86 3.72
3083 3523 2.851824 CGGCATTACAAATTTTCTCGGC 59.148 45.455 0.00 0.00 0.00 5.54
3155 3595 1.033746 AAAGCATCCGCACCCATCTG 61.034 55.000 0.00 0.00 42.27 2.90
3223 3663 0.883814 CAATCTGCAGGATCCGAGCC 60.884 60.000 23.77 0.00 32.76 4.70
3247 3687 3.632333 TGTACCTTCGTCATGATCTCCT 58.368 45.455 0.00 0.00 0.00 3.69
3345 3788 3.006247 GCTGATGGACTTCTTGACCTTC 58.994 50.000 0.00 0.00 36.03 3.46
3348 3791 2.777832 AGCTGATGGACTTCTTGACC 57.222 50.000 0.00 0.00 0.00 4.02
3364 3808 2.290122 CTGCCGTGGATCTCGAAGCT 62.290 60.000 11.16 0.00 0.00 3.74
3396 3840 0.037447 TGGATTCATGTTGGTCGCCA 59.963 50.000 0.00 0.00 0.00 5.69
3400 3844 1.094785 CCGGTGGATTCATGTTGGTC 58.905 55.000 0.00 0.00 0.00 4.02
3401 3845 0.404040 ACCGGTGGATTCATGTTGGT 59.596 50.000 6.12 0.00 0.00 3.67
3410 3854 1.304381 ATGCTTGCACCGGTGGATT 60.304 52.632 34.58 15.11 0.00 3.01
3473 3917 6.868339 CGCTAACCCTCAATCAAAAAGAAAAT 59.132 34.615 0.00 0.00 0.00 1.82
3476 3920 5.067273 TCGCTAACCCTCAATCAAAAAGAA 58.933 37.500 0.00 0.00 0.00 2.52
3477 3921 4.647611 TCGCTAACCCTCAATCAAAAAGA 58.352 39.130 0.00 0.00 0.00 2.52
3605 6153 6.870965 GTCTAGTGATCATCTGTTTTGTGAGT 59.129 38.462 0.00 0.00 0.00 3.41
3615 6163 4.212214 TCGTCATCGTCTAGTGATCATCTG 59.788 45.833 0.00 0.00 38.33 2.90
3617 6165 4.733972 TCGTCATCGTCTAGTGATCATC 57.266 45.455 0.00 0.00 38.33 2.92
3618 6166 5.500645 TTTCGTCATCGTCTAGTGATCAT 57.499 39.130 0.00 0.00 38.33 2.45
3619 6167 4.957759 TTTCGTCATCGTCTAGTGATCA 57.042 40.909 0.00 0.00 38.33 2.92
3643 6192 5.843673 TCTCGCATCTTCAAGAGTTCTAT 57.156 39.130 0.00 0.00 32.90 1.98
3665 6214 3.112205 GCACTGAGGGATGCGGGAT 62.112 63.158 0.00 0.00 30.97 3.85
3666 6215 3.785859 GCACTGAGGGATGCGGGA 61.786 66.667 0.00 0.00 30.97 5.14
3670 6219 0.106819 ATCTTGGCACTGAGGGATGC 60.107 55.000 0.00 0.00 41.29 3.91
3672 6221 0.549950 CCATCTTGGCACTGAGGGAT 59.450 55.000 13.12 0.00 36.10 3.85
3673 6222 1.993653 CCATCTTGGCACTGAGGGA 59.006 57.895 13.12 0.00 36.10 4.20
3697 6266 1.120530 TTATTGGTCTCCTCGCCTCC 58.879 55.000 0.00 0.00 0.00 4.30
3700 6269 2.495084 GGAATTATTGGTCTCCTCGCC 58.505 52.381 0.00 0.00 0.00 5.54
3702 6271 5.298347 GTTAGGGAATTATTGGTCTCCTCG 58.702 45.833 0.00 0.00 0.00 4.63
3707 6276 3.743269 CGCCGTTAGGGAATTATTGGTCT 60.743 47.826 0.00 0.00 38.47 3.85
3727 6296 4.874977 GTCTAGGGCAGCCGTCGC 62.875 72.222 10.72 0.00 0.00 5.19
3745 6314 2.049802 TCGTGACGCGAGGGTTTC 60.050 61.111 15.93 0.00 45.68 2.78
3753 6322 1.371267 TTCTCAACCTCGTGACGCG 60.371 57.895 3.53 3.53 43.01 6.01
3754 6323 0.318784 AGTTCTCAACCTCGTGACGC 60.319 55.000 0.00 0.00 0.00 5.19
3755 6324 1.269102 ACAGTTCTCAACCTCGTGACG 60.269 52.381 0.00 0.00 0.00 4.35
3756 6325 2.510768 ACAGTTCTCAACCTCGTGAC 57.489 50.000 0.00 0.00 0.00 3.67
3757 6326 2.223971 GGAACAGTTCTCAACCTCGTGA 60.224 50.000 13.13 0.00 0.00 4.35
3758 6327 2.135933 GGAACAGTTCTCAACCTCGTG 58.864 52.381 13.13 0.00 0.00 4.35
3759 6328 2.040178 AGGAACAGTTCTCAACCTCGT 58.960 47.619 13.13 0.00 0.00 4.18
3760 6329 2.802816 CAAGGAACAGTTCTCAACCTCG 59.197 50.000 13.13 0.00 0.00 4.63
3761 6330 3.142174 CCAAGGAACAGTTCTCAACCTC 58.858 50.000 13.13 0.00 0.00 3.85
3762 6331 2.777692 TCCAAGGAACAGTTCTCAACCT 59.222 45.455 13.13 0.00 0.00 3.50
3763 6332 3.142174 CTCCAAGGAACAGTTCTCAACC 58.858 50.000 13.13 0.00 0.00 3.77
3764 6333 3.809905 ACTCCAAGGAACAGTTCTCAAC 58.190 45.455 13.13 0.00 0.00 3.18
3772 6341 1.677217 GGCAGCTACTCCAAGGAACAG 60.677 57.143 0.00 0.00 0.00 3.16
3806 6375 1.608055 TCCATGCAACAACACCAGAG 58.392 50.000 0.00 0.00 0.00 3.35
3816 6385 5.104374 CCATTTGTCTACATTCCATGCAAC 58.896 41.667 0.00 0.00 0.00 4.17
3826 6395 0.106719 CCCGGCCCATTTGTCTACAT 60.107 55.000 0.00 0.00 0.00 2.29
3852 6421 6.524101 TTGAATTTCATGGTTACTTAGGCC 57.476 37.500 0.00 0.00 0.00 5.19
3853 6422 8.872845 CAAATTGAATTTCATGGTTACTTAGGC 58.127 33.333 0.00 0.00 0.00 3.93
3858 6427 8.306761 GGAGTCAAATTGAATTTCATGGTTACT 58.693 33.333 0.00 2.52 0.00 2.24
3860 6429 7.312154 CGGAGTCAAATTGAATTTCATGGTTA 58.688 34.615 0.00 0.00 0.00 2.85
3866 6435 4.022416 CACCCGGAGTCAAATTGAATTTCA 60.022 41.667 0.73 0.00 0.00 2.69
3872 6441 0.109532 TGCACCCGGAGTCAAATTGA 59.890 50.000 0.73 0.00 0.00 2.57
3873 6442 1.135315 CATGCACCCGGAGTCAAATTG 60.135 52.381 0.73 0.00 0.00 2.32
3880 6449 3.612247 GAGCACATGCACCCGGAGT 62.612 63.158 0.73 0.00 45.16 3.85
3885 6454 1.582968 CACAAGAGCACATGCACCC 59.417 57.895 6.64 0.00 45.16 4.61
3902 6471 6.977502 TGACATTTCAAAATTCTTTTCTCGCA 59.022 30.769 0.00 0.00 0.00 5.10
3991 6562 9.665719 CATAGGCCAAAATGTTTAACCTTTTAT 57.334 29.630 5.01 0.00 27.58 1.40
3992 6563 7.604545 GCATAGGCCAAAATGTTTAACCTTTTA 59.395 33.333 5.01 0.00 27.58 1.52
3996 6567 4.530161 TGCATAGGCCAAAATGTTTAACCT 59.470 37.500 5.01 0.00 40.13 3.50
4014 6585 8.893219 TGGTGTTCAATTTGTTTTTATGCATA 57.107 26.923 1.16 1.16 0.00 3.14
4076 6649 1.598601 GCTTTGGTGTTTCGTCGGTAA 59.401 47.619 0.00 0.00 0.00 2.85
4077 6650 1.202557 AGCTTTGGTGTTTCGTCGGTA 60.203 47.619 0.00 0.00 0.00 4.02
4081 6654 1.305201 TGGAGCTTTGGTGTTTCGTC 58.695 50.000 0.00 0.00 0.00 4.20
4083 6656 3.308530 GAAATGGAGCTTTGGTGTTTCG 58.691 45.455 0.00 0.00 0.00 3.46
4093 6666 3.940209 TTTTCATGCGAAATGGAGCTT 57.060 38.095 0.00 0.00 40.75 3.74
4096 6669 5.162794 TGACAATTTTCATGCGAAATGGAG 58.837 37.500 12.84 7.46 40.75 3.86
4100 6673 4.989797 TGCTTGACAATTTTCATGCGAAAT 59.010 33.333 20.87 0.00 45.30 2.17
4131 6704 5.524511 TTGTGATTGTACGCATTAGTGTC 57.475 39.130 0.00 0.00 39.61 3.67
4132 6705 5.933187 TTTGTGATTGTACGCATTAGTGT 57.067 34.783 0.00 0.00 42.14 3.55
4163 6736 9.489084 GAGGGAGCAGTAAAATGTTTTTAAAAT 57.511 29.630 0.55 0.00 0.00 1.82
4164 6737 7.929245 GGAGGGAGCAGTAAAATGTTTTTAAAA 59.071 33.333 0.00 0.00 0.00 1.52
4165 6738 7.438564 GGAGGGAGCAGTAAAATGTTTTTAAA 58.561 34.615 0.00 0.00 0.00 1.52
4166 6739 6.294286 CGGAGGGAGCAGTAAAATGTTTTTAA 60.294 38.462 0.00 0.00 0.00 1.52
4167 6740 5.182380 CGGAGGGAGCAGTAAAATGTTTTTA 59.818 40.000 0.00 0.00 0.00 1.52
4168 6741 4.022329 CGGAGGGAGCAGTAAAATGTTTTT 60.022 41.667 0.00 0.00 0.00 1.94
4169 6742 3.506067 CGGAGGGAGCAGTAAAATGTTTT 59.494 43.478 0.00 0.00 0.00 2.43
4170 6743 3.081804 CGGAGGGAGCAGTAAAATGTTT 58.918 45.455 0.00 0.00 0.00 2.83
4171 6744 2.304761 TCGGAGGGAGCAGTAAAATGTT 59.695 45.455 0.00 0.00 0.00 2.71
4172 6745 1.906574 TCGGAGGGAGCAGTAAAATGT 59.093 47.619 0.00 0.00 0.00 2.71
4173 6746 2.691409 TCGGAGGGAGCAGTAAAATG 57.309 50.000 0.00 0.00 0.00 2.32
4174 6747 2.104963 GGATCGGAGGGAGCAGTAAAAT 59.895 50.000 0.00 0.00 30.89 1.82
4175 6748 1.485066 GGATCGGAGGGAGCAGTAAAA 59.515 52.381 0.00 0.00 30.89 1.52
4176 6749 1.120530 GGATCGGAGGGAGCAGTAAA 58.879 55.000 0.00 0.00 30.89 2.01
4177 6750 0.032515 TGGATCGGAGGGAGCAGTAA 60.033 55.000 0.00 0.00 30.89 2.24
4178 6751 0.188587 ATGGATCGGAGGGAGCAGTA 59.811 55.000 0.00 0.00 30.89 2.74
4179 6752 0.188587 TATGGATCGGAGGGAGCAGT 59.811 55.000 0.00 0.00 30.89 4.40
4180 6753 1.566211 ATATGGATCGGAGGGAGCAG 58.434 55.000 0.00 0.00 30.89 4.24
4181 6754 2.030027 AATATGGATCGGAGGGAGCA 57.970 50.000 0.00 0.00 30.89 4.26
4182 6755 3.100671 AGTAATATGGATCGGAGGGAGC 58.899 50.000 0.00 0.00 0.00 4.70
4183 6756 4.528596 ACAAGTAATATGGATCGGAGGGAG 59.471 45.833 0.00 0.00 0.00 4.30
4184 6757 4.489737 ACAAGTAATATGGATCGGAGGGA 58.510 43.478 0.00 0.00 0.00 4.20
4185 6758 4.528596 AGACAAGTAATATGGATCGGAGGG 59.471 45.833 0.00 0.00 0.00 4.30
4186 6759 5.730296 AGACAAGTAATATGGATCGGAGG 57.270 43.478 0.00 0.00 0.00 4.30
4188 6761 9.529823 ACTATAAGACAAGTAATATGGATCGGA 57.470 33.333 0.00 0.00 0.00 4.55
4244 6817 9.823647 CTTGACAAGGATGTAACTAGACATATT 57.176 33.333 7.35 0.00 40.18 1.28
4245 6818 9.201989 TCTTGACAAGGATGTAACTAGACATAT 57.798 33.333 15.13 0.00 40.18 1.78
4246 6819 8.467598 GTCTTGACAAGGATGTAACTAGACATA 58.532 37.037 15.13 0.00 40.18 2.29
4247 6820 7.039011 TGTCTTGACAAGGATGTAACTAGACAT 60.039 37.037 15.13 0.00 39.18 3.06
4248 6821 6.266786 TGTCTTGACAAGGATGTAACTAGACA 59.733 38.462 15.13 4.91 40.40 3.41
4249 6822 6.688578 TGTCTTGACAAGGATGTAACTAGAC 58.311 40.000 15.13 2.35 40.74 2.59
4250 6823 6.911250 TGTCTTGACAAGGATGTAACTAGA 57.089 37.500 15.13 0.00 40.74 2.43
4251 6824 7.962964 TTTGTCTTGACAAGGATGTAACTAG 57.037 36.000 15.13 0.00 40.74 2.57
4252 6825 8.375506 AGATTTGTCTTGACAAGGATGTAACTA 58.624 33.333 15.13 0.00 40.74 2.24
4253 6826 7.227156 AGATTTGTCTTGACAAGGATGTAACT 58.773 34.615 15.13 4.96 40.74 2.24
4254 6827 7.440523 AGATTTGTCTTGACAAGGATGTAAC 57.559 36.000 15.13 5.55 40.74 2.50
4255 6828 9.219603 CTTAGATTTGTCTTGACAAGGATGTAA 57.780 33.333 15.13 13.51 40.74 2.41
4256 6829 8.593679 TCTTAGATTTGTCTTGACAAGGATGTA 58.406 33.333 15.13 8.10 40.74 2.29
4257 6830 7.389053 GTCTTAGATTTGTCTTGACAAGGATGT 59.611 37.037 15.13 8.90 44.25 3.06
4258 6831 7.388776 TGTCTTAGATTTGTCTTGACAAGGATG 59.611 37.037 15.13 6.62 32.98 3.51
4259 6832 7.453393 TGTCTTAGATTTGTCTTGACAAGGAT 58.547 34.615 15.13 8.01 32.98 3.24
4260 6833 6.826668 TGTCTTAGATTTGTCTTGACAAGGA 58.173 36.000 15.13 3.79 32.98 3.36
4261 6834 7.496529 TTGTCTTAGATTTGTCTTGACAAGG 57.503 36.000 15.13 0.00 37.22 3.61
4276 6849 8.531982 CCTCCGATCCATATTATTTGTCTTAGA 58.468 37.037 0.00 0.00 0.00 2.10
4277 6850 7.766278 CCCTCCGATCCATATTATTTGTCTTAG 59.234 40.741 0.00 0.00 0.00 2.18
4278 6851 7.456585 TCCCTCCGATCCATATTATTTGTCTTA 59.543 37.037 0.00 0.00 0.00 2.10
4279 6852 6.272324 TCCCTCCGATCCATATTATTTGTCTT 59.728 38.462 0.00 0.00 0.00 3.01
4280 6853 5.785423 TCCCTCCGATCCATATTATTTGTCT 59.215 40.000 0.00 0.00 0.00 3.41
4281 6854 6.049955 TCCCTCCGATCCATATTATTTGTC 57.950 41.667 0.00 0.00 0.00 3.18
4282 6855 5.548056 ACTCCCTCCGATCCATATTATTTGT 59.452 40.000 0.00 0.00 0.00 2.83
4283 6856 6.054860 ACTCCCTCCGATCCATATTATTTG 57.945 41.667 0.00 0.00 0.00 2.32
4284 6857 6.960542 AGTACTCCCTCCGATCCATATTATTT 59.039 38.462 0.00 0.00 0.00 1.40
4285 6858 6.503944 AGTACTCCCTCCGATCCATATTATT 58.496 40.000 0.00 0.00 0.00 1.40
4286 6859 6.093617 AGTACTCCCTCCGATCCATATTAT 57.906 41.667 0.00 0.00 0.00 1.28
4287 6860 5.531753 AGTACTCCCTCCGATCCATATTA 57.468 43.478 0.00 0.00 0.00 0.98
4288 6861 4.405756 AGTACTCCCTCCGATCCATATT 57.594 45.455 0.00 0.00 0.00 1.28
4289 6862 4.405756 AAGTACTCCCTCCGATCCATAT 57.594 45.455 0.00 0.00 0.00 1.78
4290 6863 3.897657 AAGTACTCCCTCCGATCCATA 57.102 47.619 0.00 0.00 0.00 2.74
4291 6864 2.777459 AAGTACTCCCTCCGATCCAT 57.223 50.000 0.00 0.00 0.00 3.41
4292 6865 2.544844 AAAGTACTCCCTCCGATCCA 57.455 50.000 0.00 0.00 0.00 3.41
4293 6866 3.908643 AAAAAGTACTCCCTCCGATCC 57.091 47.619 0.00 0.00 0.00 3.36
4311 6884 5.010112 TCCCGCATGAACAGTAATTCAAAAA 59.990 36.000 0.00 0.00 41.78 1.94
4312 6885 4.520874 TCCCGCATGAACAGTAATTCAAAA 59.479 37.500 0.00 0.00 41.78 2.44
4313 6886 4.075682 TCCCGCATGAACAGTAATTCAAA 58.924 39.130 0.00 0.00 41.78 2.69
4314 6887 3.680490 TCCCGCATGAACAGTAATTCAA 58.320 40.909 0.00 0.00 41.78 2.69
4315 6888 3.342377 TCCCGCATGAACAGTAATTCA 57.658 42.857 0.00 0.00 42.62 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.