Multiple sequence alignment - TraesCS3D01G504200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G504200 chr3D 100.000 8189 0 0 1 8189 591828240 591820052 0.000000e+00 15123.0
1 TraesCS3D01G504200 chr3D 85.130 1930 226 38 5850 7771 9418002 9416126 0.000000e+00 1917.0
2 TraesCS3D01G504200 chr3D 84.334 1915 231 46 5849 7747 5232925 5234786 0.000000e+00 1810.0
3 TraesCS3D01G504200 chr3D 95.423 721 30 3 4470 5187 30399193 30399913 0.000000e+00 1146.0
4 TraesCS3D01G504200 chr3D 95.152 722 29 6 4470 5187 147433151 147433870 0.000000e+00 1134.0
5 TraesCS3D01G504200 chr3D 94.897 725 28 8 4470 5190 64672627 64671908 0.000000e+00 1125.0
6 TraesCS3D01G504200 chr3D 84.195 677 57 27 1004 1643 9420184 9419521 5.430000e-171 612.0
7 TraesCS3D01G504200 chr3D 83.192 589 81 16 5271 5846 9418725 9418142 2.620000e-144 523.0
8 TraesCS3D01G504200 chr3D 81.023 606 85 23 1030 1621 5230829 5231418 9.690000e-124 455.0
9 TraesCS3D01G504200 chr3D 79.911 448 63 16 1028 1450 5222007 5222452 3.710000e-78 303.0
10 TraesCS3D01G504200 chr3B 89.964 3039 194 46 5227 8179 792861354 792864367 0.000000e+00 3819.0
11 TraesCS3D01G504200 chr3B 82.871 2668 236 110 2 2598 792857132 792859649 0.000000e+00 2191.0
12 TraesCS3D01G504200 chr3B 84.089 1942 239 40 5849 7771 28316470 28314580 0.000000e+00 1810.0
13 TraesCS3D01G504200 chr3B 82.898 1187 155 25 6604 7771 13506697 13505540 0.000000e+00 1024.0
14 TraesCS3D01G504200 chr3B 86.111 576 68 7 5977 6551 13508687 13508123 1.950000e-170 610.0
15 TraesCS3D01G504200 chr3B 82.129 526 81 10 5315 5830 28317068 28316546 9.760000e-119 438.0
16 TraesCS3D01G504200 chr3B 83.111 450 47 11 1028 1450 13509665 13509218 4.640000e-102 383.0
17 TraesCS3D01G504200 chr3B 87.925 265 20 6 2595 2855 792859751 792860007 1.340000e-77 302.0
18 TraesCS3D01G504200 chr3B 79.457 258 35 9 3388 3627 792860575 792860832 5.080000e-37 167.0
19 TraesCS3D01G504200 chr3B 84.906 159 15 7 3048 3200 792860137 792860292 1.420000e-32 152.0
20 TraesCS3D01G504200 chr3B 83.333 180 11 4 3739 3918 792860954 792861114 1.840000e-31 148.0
21 TraesCS3D01G504200 chr3B 82.258 186 17 7 3187 3372 792860311 792860480 6.620000e-31 147.0
22 TraesCS3D01G504200 chr3A 89.681 2665 195 50 5279 7892 722279040 722281675 0.000000e+00 3325.0
23 TraesCS3D01G504200 chr3A 83.360 3113 223 145 15 2984 722274279 722277239 0.000000e+00 2606.0
24 TraesCS3D01G504200 chr3A 85.382 1676 196 29 5849 7516 11760926 11762560 0.000000e+00 1692.0
25 TraesCS3D01G504200 chr3A 90.581 499 31 6 7398 7885 325905149 325904656 0.000000e+00 647.0
26 TraesCS3D01G504200 chr3A 92.118 406 27 4 4047 4448 722278455 722278859 1.190000e-157 568.0
27 TraesCS3D01G504200 chr3A 83.660 612 72 17 1027 1625 11758258 11758854 1.200000e-152 551.0
28 TraesCS3D01G504200 chr3A 82.771 563 80 14 5281 5830 11760293 11760851 3.440000e-133 486.0
29 TraesCS3D01G504200 chr3A 92.701 137 6 1 3062 3194 722277610 722277746 2.330000e-45 195.0
30 TraesCS3D01G504200 chr3A 76.038 313 45 14 3729 4038 686542807 686543092 1.430000e-27 135.0
31 TraesCS3D01G504200 chr3A 87.097 124 10 4 3251 3372 722277849 722277968 1.430000e-27 135.0
32 TraesCS3D01G504200 chr3A 97.561 41 1 0 7398 7438 325905185 325905145 4.100000e-08 71.3
33 TraesCS3D01G504200 chrUn 82.552 2539 343 60 5273 7771 36511577 36514055 0.000000e+00 2143.0
34 TraesCS3D01G504200 chrUn 81.290 620 79 22 1028 1636 36508235 36508828 1.240000e-127 468.0
35 TraesCS3D01G504200 chrUn 77.500 400 64 21 3651 4042 92638892 92638511 4.980000e-52 217.0
36 TraesCS3D01G504200 chr2D 96.000 725 24 5 4467 5187 9515932 9516655 0.000000e+00 1173.0
37 TraesCS3D01G504200 chr2D 95.034 725 32 4 4467 5187 9507150 9507874 0.000000e+00 1136.0
38 TraesCS3D01G504200 chr7D 95.284 721 27 7 4470 5187 39581078 39581794 0.000000e+00 1136.0
39 TraesCS3D01G504200 chr7D 92.982 57 3 1 3497 3552 224486200 224486144 1.890000e-11 82.4
40 TraesCS3D01G504200 chr7D 79.000 100 15 6 1514 1610 632162713 632162809 6.860000e-06 63.9
41 TraesCS3D01G504200 chr1A 95.000 720 31 4 4470 5187 261799430 261800146 0.000000e+00 1125.0
42 TraesCS3D01G504200 chr1A 79.268 246 34 10 3800 4043 557877654 557877884 1.100000e-33 156.0
43 TraesCS3D01G504200 chr6D 94.467 723 37 3 4470 5190 380974249 380973528 0.000000e+00 1110.0
44 TraesCS3D01G504200 chr6D 80.973 226 43 0 5367 5592 135428788 135429013 6.530000e-41 180.0
45 TraesCS3D01G504200 chr6A 94.452 721 37 3 4470 5187 540829979 540830699 0.000000e+00 1107.0
46 TraesCS3D01G504200 chr6A 78.333 420 57 28 3640 4046 20245501 20245899 2.950000e-59 241.0
47 TraesCS3D01G504200 chr6A 79.839 248 50 0 5367 5614 176982805 176983052 1.820000e-41 182.0
48 TraesCS3D01G504200 chr4A 90.438 502 32 6 7395 7885 686150639 686151135 0.000000e+00 647.0
49 TraesCS3D01G504200 chr5A 89.669 484 34 7 7413 7885 568455442 568454964 3.270000e-168 603.0
50 TraesCS3D01G504200 chr5A 89.346 413 29 5 7480 7881 499134028 499134436 9.490000e-139 505.0
51 TraesCS3D01G504200 chr2A 90.107 374 25 3 7520 7885 382402975 382403344 7.440000e-130 475.0
52 TraesCS3D01G504200 chr2A 87.805 164 16 3 3878 4037 766457480 766457643 1.080000e-43 189.0
53 TraesCS3D01G504200 chr2A 79.298 285 45 12 3765 4042 603767857 603768134 3.900000e-43 187.0
54 TraesCS3D01G504200 chr2A 95.000 60 3 0 3984 4043 24409420 24409479 2.430000e-15 95.3
55 TraesCS3D01G504200 chr6B 80.242 248 49 0 5367 5614 234151738 234151985 3.900000e-43 187.0
56 TraesCS3D01G504200 chr2B 83.125 160 21 5 3881 4036 53475916 53476073 3.080000e-29 141.0
57 TraesCS3D01G504200 chr2B 91.667 60 5 0 3984 4043 38419617 38419558 5.270000e-12 84.2
58 TraesCS3D01G504200 chr7B 79.000 100 15 6 1514 1610 745143452 745143548 6.860000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G504200 chr3D 591820052 591828240 8188 True 15123.000000 15123 100.000000 1 8189 1 chr3D.!!$R2 8188
1 TraesCS3D01G504200 chr3D 30399193 30399913 720 False 1146.000000 1146 95.423000 4470 5187 1 chr3D.!!$F2 717
2 TraesCS3D01G504200 chr3D 147433151 147433870 719 False 1134.000000 1134 95.152000 4470 5187 1 chr3D.!!$F3 717
3 TraesCS3D01G504200 chr3D 5230829 5234786 3957 False 1132.500000 1810 82.678500 1030 7747 2 chr3D.!!$F4 6717
4 TraesCS3D01G504200 chr3D 64671908 64672627 719 True 1125.000000 1125 94.897000 4470 5190 1 chr3D.!!$R1 720
5 TraesCS3D01G504200 chr3D 9416126 9420184 4058 True 1017.333333 1917 84.172333 1004 7771 3 chr3D.!!$R3 6767
6 TraesCS3D01G504200 chr3B 28314580 28317068 2488 True 1124.000000 1810 83.109000 5315 7771 2 chr3B.!!$R2 2456
7 TraesCS3D01G504200 chr3B 792857132 792864367 7235 False 989.428571 3819 84.387714 2 8179 7 chr3B.!!$F1 8177
8 TraesCS3D01G504200 chr3B 13505540 13509665 4125 True 672.333333 1024 84.040000 1028 7771 3 chr3B.!!$R1 6743
9 TraesCS3D01G504200 chr3A 722274279 722281675 7396 False 1365.800000 3325 88.991400 15 7892 5 chr3A.!!$F3 7877
10 TraesCS3D01G504200 chr3A 11758258 11762560 4302 False 909.666667 1692 83.937667 1027 7516 3 chr3A.!!$F2 6489
11 TraesCS3D01G504200 chr3A 325904656 325905185 529 True 359.150000 647 94.071000 7398 7885 2 chr3A.!!$R1 487
12 TraesCS3D01G504200 chrUn 36508235 36514055 5820 False 1305.500000 2143 81.921000 1028 7771 2 chrUn.!!$F1 6743
13 TraesCS3D01G504200 chr2D 9515932 9516655 723 False 1173.000000 1173 96.000000 4467 5187 1 chr2D.!!$F2 720
14 TraesCS3D01G504200 chr2D 9507150 9507874 724 False 1136.000000 1136 95.034000 4467 5187 1 chr2D.!!$F1 720
15 TraesCS3D01G504200 chr7D 39581078 39581794 716 False 1136.000000 1136 95.284000 4470 5187 1 chr7D.!!$F1 717
16 TraesCS3D01G504200 chr1A 261799430 261800146 716 False 1125.000000 1125 95.000000 4470 5187 1 chr1A.!!$F1 717
17 TraesCS3D01G504200 chr6D 380973528 380974249 721 True 1110.000000 1110 94.467000 4470 5190 1 chr6D.!!$R1 720
18 TraesCS3D01G504200 chr6A 540829979 540830699 720 False 1107.000000 1107 94.452000 4470 5187 1 chr6A.!!$F3 717

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 134 0.032130 TGCGTCTCTTCTTCTGCGTT 59.968 50.0 0.00 0.0 0.00 4.84 F
1875 2381 0.314302 ACCACGTACACTCAGCTCAC 59.686 55.0 0.00 0.0 0.00 3.51 F
2854 3748 0.177373 GGTTAGGTTAGGTGGCTCGG 59.823 60.0 0.00 0.0 0.00 4.63 F
2969 3892 0.178953 AGCACCTTGATTGGTTGGCT 60.179 50.0 0.00 0.0 38.45 4.75 F
3438 6211 0.179040 AGGGTGTGTTTGGTACCGTG 60.179 55.0 7.57 0.0 35.31 4.94 F
4660 7683 0.030638 CCACAACCGGCTGACAAAAG 59.969 55.0 12.82 0.0 0.00 2.27 F
5372 8416 0.041238 AGGACCTGGTGGAGATCGAA 59.959 55.0 2.82 0.0 37.04 3.71 F
5618 8678 0.246910 GGAAGTTCGGTCAGTCCTCC 59.753 60.0 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2080 2590 0.179070 TGCAGGTCAGCAAACACGTA 60.179 50.0 0.00 0.0 42.46 3.57 R
3418 6191 0.179040 ACGGTACCAAACACACCCTG 60.179 55.0 13.54 0.0 0.00 4.45 R
3934 6907 0.179113 GTTGTTTGGCAGGGTGTGTG 60.179 55.0 0.00 0.0 0.00 3.82 R
3936 6909 0.179113 GTGTTGTTTGGCAGGGTGTG 60.179 55.0 0.00 0.0 0.00 3.82 R
5284 8319 0.393537 GGGGTGATCTGCTGTCCAAG 60.394 60.0 0.00 0.0 0.00 3.61 R
6007 9282 0.321671 CGAACTTCCAGCCCTTCAGA 59.678 55.0 0.00 0.0 0.00 3.27 R
6788 11481 0.107654 ATACTTCCGTGGCTGGCTTC 60.108 55.0 2.00 0.0 0.00 3.86 R
7238 11952 0.323629 CAGGGGCTTTACTTCCACGA 59.676 55.0 0.00 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 9.625747 TGGCCAAAAGAAAAGAAAGATAAAAAT 57.374 25.926 0.61 0.00 0.00 1.82
51 52 5.640357 AGATAAAAATTGCACATGCCAACAG 59.360 36.000 0.49 0.00 41.18 3.16
52 53 2.914695 AAATTGCACATGCCAACAGT 57.085 40.000 0.49 0.00 41.18 3.55
117 129 0.892063 GACCCTGCGTCTCTTCTTCT 59.108 55.000 0.00 0.00 38.57 2.85
118 130 0.605589 ACCCTGCGTCTCTTCTTCTG 59.394 55.000 0.00 0.00 0.00 3.02
119 131 0.739112 CCCTGCGTCTCTTCTTCTGC 60.739 60.000 0.00 0.00 0.00 4.26
120 132 1.075425 CCTGCGTCTCTTCTTCTGCG 61.075 60.000 0.00 0.00 0.00 5.18
121 133 0.387878 CTGCGTCTCTTCTTCTGCGT 60.388 55.000 0.00 0.00 0.00 5.24
122 134 0.032130 TGCGTCTCTTCTTCTGCGTT 59.968 50.000 0.00 0.00 0.00 4.84
123 135 1.268625 TGCGTCTCTTCTTCTGCGTTA 59.731 47.619 0.00 0.00 0.00 3.18
124 136 1.649662 GCGTCTCTTCTTCTGCGTTAC 59.350 52.381 0.00 0.00 0.00 2.50
125 137 2.251893 CGTCTCTTCTTCTGCGTTACC 58.748 52.381 0.00 0.00 0.00 2.85
126 138 2.351447 CGTCTCTTCTTCTGCGTTACCA 60.351 50.000 0.00 0.00 0.00 3.25
127 139 2.987821 GTCTCTTCTTCTGCGTTACCAC 59.012 50.000 0.00 0.00 0.00 4.16
199 211 4.776322 TCGATGCCCAGTTGCCCG 62.776 66.667 0.00 0.00 0.00 6.13
247 259 1.070376 GGTACCAAAACAACGACGCTC 60.070 52.381 7.15 0.00 0.00 5.03
248 260 0.854062 TACCAAAACAACGACGCTCG 59.146 50.000 0.00 5.97 46.93 5.03
249 261 1.083015 CCAAAACAACGACGCTCGG 60.083 57.895 11.13 0.00 45.59 4.63
250 262 1.721133 CAAAACAACGACGCTCGGC 60.721 57.895 11.13 0.00 45.59 5.54
251 263 1.885850 AAAACAACGACGCTCGGCT 60.886 52.632 11.13 0.00 45.59 5.52
255 271 4.755614 AACGACGCTCGGCTCGAC 62.756 66.667 17.33 5.14 45.59 4.20
429 452 3.862264 GCACTCTTGCTGACTCATACACA 60.862 47.826 0.00 0.00 46.17 3.72
469 492 0.947180 ACGTTGCCATGTCACCGTAC 60.947 55.000 0.00 0.00 33.40 3.67
470 493 1.632046 CGTTGCCATGTCACCGTACC 61.632 60.000 0.00 0.00 0.00 3.34
471 494 0.321298 GTTGCCATGTCACCGTACCT 60.321 55.000 0.00 0.00 0.00 3.08
472 495 0.398696 TTGCCATGTCACCGTACCTT 59.601 50.000 0.00 0.00 0.00 3.50
473 496 0.398696 TGCCATGTCACCGTACCTTT 59.601 50.000 0.00 0.00 0.00 3.11
474 497 0.802494 GCCATGTCACCGTACCTTTG 59.198 55.000 0.00 0.00 0.00 2.77
475 498 0.802494 CCATGTCACCGTACCTTTGC 59.198 55.000 0.00 0.00 0.00 3.68
478 501 2.335316 TGTCACCGTACCTTTGCTTT 57.665 45.000 0.00 0.00 0.00 3.51
479 502 2.645802 TGTCACCGTACCTTTGCTTTT 58.354 42.857 0.00 0.00 0.00 2.27
481 504 3.065648 TGTCACCGTACCTTTGCTTTTTC 59.934 43.478 0.00 0.00 0.00 2.29
487 517 7.279313 TCACCGTACCTTTGCTTTTTCTATATC 59.721 37.037 0.00 0.00 0.00 1.63
488 518 6.541278 ACCGTACCTTTGCTTTTTCTATATCC 59.459 38.462 0.00 0.00 0.00 2.59
495 525 8.499162 CCTTTGCTTTTTCTATATCCATCTACG 58.501 37.037 0.00 0.00 0.00 3.51
593 623 1.869767 CTTGGACACTCACAAGTCAGC 59.130 52.381 0.00 0.00 39.30 4.26
594 624 0.829990 TGGACACTCACAAGTCAGCA 59.170 50.000 0.00 0.00 36.50 4.41
595 625 1.209261 TGGACACTCACAAGTCAGCAA 59.791 47.619 0.00 0.00 36.50 3.91
596 626 1.869767 GGACACTCACAAGTCAGCAAG 59.130 52.381 0.00 0.00 36.50 4.01
597 627 2.555199 GACACTCACAAGTCAGCAAGT 58.445 47.619 0.00 0.00 34.93 3.16
603 633 1.004610 CACAAGTCAGCAAGTCACACG 60.005 52.381 0.00 0.00 0.00 4.49
635 669 0.622738 ACTCCCATGCACCCATCTCT 60.623 55.000 0.00 0.00 0.00 3.10
660 694 2.045926 AACCGCCAGATGACCAGC 60.046 61.111 0.00 0.00 0.00 4.85
661 695 3.628646 AACCGCCAGATGACCAGCC 62.629 63.158 0.00 0.00 0.00 4.85
662 696 4.100084 CCGCCAGATGACCAGCCA 62.100 66.667 0.00 0.00 0.00 4.75
663 697 2.513204 CGCCAGATGACCAGCCAG 60.513 66.667 0.00 0.00 0.00 4.85
708 742 6.634805 ACTACTATATGGCATGCATCTACAC 58.365 40.000 21.36 0.00 0.00 2.90
721 755 3.480470 CATCTACACCCCATTGTCCATC 58.520 50.000 0.00 0.00 0.00 3.51
726 760 0.833287 ACCCCATTGTCCATCGAGAG 59.167 55.000 0.00 0.00 0.00 3.20
745 779 1.215655 GGCTGTCGATCGATTTCGGG 61.216 60.000 22.50 8.95 39.56 5.14
749 783 0.666913 GTCGATCGATTTCGGGGAGA 59.333 55.000 22.50 0.00 39.56 3.71
750 784 1.066605 GTCGATCGATTTCGGGGAGAA 59.933 52.381 22.50 0.00 39.56 2.87
809 843 2.805295 CGTAACCACATCCCATACGCAT 60.805 50.000 0.00 0.00 33.86 4.73
843 883 2.265739 GCACCCATCGCTCACTCA 59.734 61.111 0.00 0.00 0.00 3.41
855 895 1.357258 CTCACTCACTCGCCATGTGC 61.357 60.000 0.00 0.00 35.58 4.57
856 896 1.668793 CACTCACTCGCCATGTGCA 60.669 57.895 6.92 0.00 41.33 4.57
857 897 1.022982 CACTCACTCGCCATGTGCAT 61.023 55.000 0.00 0.00 41.33 3.96
858 898 0.742281 ACTCACTCGCCATGTGCATC 60.742 55.000 0.00 0.00 41.33 3.91
860 900 1.450848 CACTCGCCATGTGCATCCT 60.451 57.895 0.00 0.00 41.33 3.24
862 902 1.890979 CTCGCCATGTGCATCCTCC 60.891 63.158 0.00 0.00 41.33 4.30
863 903 2.124612 CGCCATGTGCATCCTCCA 60.125 61.111 0.00 0.00 41.33 3.86
864 904 1.527611 CGCCATGTGCATCCTCCAT 60.528 57.895 0.00 0.00 41.33 3.41
865 905 1.792118 CGCCATGTGCATCCTCCATG 61.792 60.000 7.15 7.15 41.33 3.66
866 906 0.754217 GCCATGTGCATCCTCCATGT 60.754 55.000 11.86 0.00 40.77 3.21
867 907 1.315690 CCATGTGCATCCTCCATGTC 58.684 55.000 11.86 0.00 35.34 3.06
898 953 2.736144 TATAAGCCCGCACTATTCCG 57.264 50.000 0.00 0.00 0.00 4.30
901 956 1.614241 AAGCCCGCACTATTCCGTCT 61.614 55.000 0.00 0.00 0.00 4.18
917 972 1.228063 TCTACCTACCTAGCCCGCG 60.228 63.158 0.00 0.00 0.00 6.46
966 1038 1.956629 GCAAGTCCTACCTAGCCGCA 61.957 60.000 0.00 0.00 0.00 5.69
1191 1283 4.217334 GTCATGATCCTGCTCGAGAAGATA 59.783 45.833 22.84 9.89 0.00 1.98
1197 1289 3.003793 TCCTGCTCGAGAAGATATTCGTG 59.996 47.826 22.84 2.26 37.99 4.35
1416 1561 6.037610 GCTCTCATTAGGAAAATGTTGATCGT 59.962 38.462 0.00 0.00 0.00 3.73
1496 1658 0.463833 GGGTGTGGTTGGATCGGATC 60.464 60.000 9.54 9.54 0.00 3.36
1512 1674 1.340405 GGATCCGATGGATGGAATGGG 60.340 57.143 2.43 0.00 43.27 4.00
1625 1791 1.410153 CCCCGCTGTAAAGGTACGTAT 59.590 52.381 0.00 0.00 32.40 3.06
1767 2261 0.817654 TCTCCGTCCTACATGCACAG 59.182 55.000 0.00 0.00 0.00 3.66
1830 2331 4.960866 CTGGCACTGGCACTGGCA 62.961 66.667 19.25 19.25 43.71 4.92
1832 2333 4.962836 GGCACTGGCACTGGCACT 62.963 66.667 14.26 0.00 43.71 4.40
1867 2368 2.030562 GCAGGCACCACGTACACT 59.969 61.111 0.00 0.00 0.00 3.55
1870 2371 0.667487 CAGGCACCACGTACACTCAG 60.667 60.000 0.00 0.00 0.00 3.35
1871 2372 2.027625 GGCACCACGTACACTCAGC 61.028 63.158 0.00 0.00 0.00 4.26
1875 2381 0.314302 ACCACGTACACTCAGCTCAC 59.686 55.000 0.00 0.00 0.00 3.51
1896 2402 4.077184 GGTGACATGGACGCCCGA 62.077 66.667 11.90 0.00 34.29 5.14
1897 2403 2.813908 GTGACATGGACGCCCGAC 60.814 66.667 0.00 0.00 34.29 4.79
1898 2404 4.077184 TGACATGGACGCCCGACC 62.077 66.667 0.00 2.31 34.29 4.79
1899 2405 4.832608 GACATGGACGCCCGACCC 62.833 72.222 6.72 2.51 34.29 4.46
1934 2440 4.320348 CGTTTCGATCCTAGTCCTACCATC 60.320 50.000 0.00 0.00 0.00 3.51
1954 2460 1.206115 GGCTGGTTTTGTTCGCAACG 61.206 55.000 0.00 0.00 36.74 4.10
1960 2466 1.088306 TTTTGTTCGCAACGTGGACT 58.912 45.000 0.00 0.00 36.74 3.85
1961 2469 0.375454 TTTGTTCGCAACGTGGACTG 59.625 50.000 0.00 0.00 36.74 3.51
1977 2485 0.892358 ACTGCCAGTTGCCACATGAG 60.892 55.000 0.00 0.00 40.16 2.90
2050 2560 0.673437 GCTAGCTAGTGAGAGCCAGG 59.327 60.000 21.62 0.00 43.97 4.45
2080 2590 2.029073 CCCGTGACTGACAAGCGT 59.971 61.111 0.00 0.00 0.00 5.07
2081 2591 1.287815 CCCGTGACTGACAAGCGTA 59.712 57.895 0.00 0.00 0.00 4.42
2082 2592 1.007336 CCCGTGACTGACAAGCGTAC 61.007 60.000 0.00 0.00 0.00 3.67
2090 2600 0.302288 TGACAAGCGTACGTGTTTGC 59.698 50.000 17.90 14.01 38.70 3.68
2131 2645 6.114767 AGGTAAAAACTATTCCCGCGATTTA 58.885 36.000 8.23 0.00 0.00 1.40
2269 2802 4.659480 GCAGTGGGCAACAACATG 57.341 55.556 0.00 0.00 43.97 3.21
2306 3042 1.669999 AATCAATTCCAGCGGCAGCC 61.670 55.000 4.82 0.00 46.67 4.85
2438 3178 1.657556 GCGCCAAACTTGCCACTTA 59.342 52.632 0.00 0.00 0.00 2.24
2446 3186 4.065088 CAAACTTGCCACTTAGCTACTCA 58.935 43.478 0.00 0.00 0.00 3.41
2485 3232 6.187125 TGATTTGTACGTACTCACTACTCC 57.813 41.667 25.12 6.77 0.00 3.85
2513 3260 4.478371 CTCCGCTCTGCCATGCCA 62.478 66.667 0.00 0.00 0.00 4.92
2514 3261 3.769369 CTCCGCTCTGCCATGCCAT 62.769 63.158 0.00 0.00 0.00 4.40
2515 3262 3.592814 CCGCTCTGCCATGCCATG 61.593 66.667 0.00 0.00 0.00 3.66
2516 3263 4.266070 CGCTCTGCCATGCCATGC 62.266 66.667 0.00 0.00 0.00 4.06
2517 3264 3.912907 GCTCTGCCATGCCATGCC 61.913 66.667 0.00 0.00 0.00 4.40
2518 3265 2.441348 CTCTGCCATGCCATGCCA 60.441 61.111 0.00 0.00 0.00 4.92
2519 3266 1.832608 CTCTGCCATGCCATGCCAT 60.833 57.895 0.00 0.00 0.00 4.40
2520 3267 1.806461 CTCTGCCATGCCATGCCATC 61.806 60.000 0.00 0.00 0.00 3.51
2521 3268 1.832608 CTGCCATGCCATGCCATCT 60.833 57.895 0.00 0.00 0.00 2.90
2522 3269 2.087462 CTGCCATGCCATGCCATCTG 62.087 60.000 0.00 0.00 0.00 2.90
2523 3270 2.867855 GCCATGCCATGCCATCTGG 61.868 63.158 0.00 0.00 36.81 3.86
2524 3271 1.456892 CCATGCCATGCCATCTGGT 60.457 57.895 0.00 0.00 36.10 4.00
2525 3272 1.461091 CCATGCCATGCCATCTGGTC 61.461 60.000 0.00 0.00 36.10 4.02
2547 3294 3.111853 TGCCATTCACTTCCGCTATAG 57.888 47.619 0.00 0.00 0.00 1.31
2548 3295 2.434336 TGCCATTCACTTCCGCTATAGT 59.566 45.455 0.84 0.00 0.00 2.12
2549 3296 3.639561 TGCCATTCACTTCCGCTATAGTA 59.360 43.478 0.84 0.00 0.00 1.82
2551 3298 5.054477 GCCATTCACTTCCGCTATAGTAAA 58.946 41.667 0.84 0.00 0.00 2.01
2553 3300 6.204882 GCCATTCACTTCCGCTATAGTAAATT 59.795 38.462 0.84 0.00 0.00 1.82
2554 3301 7.571428 GCCATTCACTTCCGCTATAGTAAATTC 60.571 40.741 0.84 0.00 0.00 2.17
2555 3302 7.657761 CCATTCACTTCCGCTATAGTAAATTCT 59.342 37.037 0.84 0.00 0.00 2.40
2560 3312 9.704098 CACTTCCGCTATAGTAAATTCTTTTTC 57.296 33.333 0.84 0.00 0.00 2.29
2563 3315 6.018507 TCCGCTATAGTAAATTCTTTTTCGCC 60.019 38.462 0.84 0.00 0.00 5.54
2574 3326 8.655651 AAATTCTTTTTCGCCACAGAATTTAA 57.344 26.923 14.23 0.00 46.71 1.52
2631 3488 1.485066 AGGGTTAATGGCCTGACGTAG 59.515 52.381 3.32 0.00 0.00 3.51
2636 3493 2.154567 AATGGCCTGACGTAGAGGTA 57.845 50.000 3.32 5.22 32.60 3.08
2683 3551 1.502231 GCATGATACTACCCAGCACG 58.498 55.000 0.00 0.00 0.00 5.34
2760 3644 4.183223 TGCCCCGACCTATAACTAACTA 57.817 45.455 0.00 0.00 0.00 2.24
2761 3645 4.744237 TGCCCCGACCTATAACTAACTAT 58.256 43.478 0.00 0.00 0.00 2.12
2762 3646 5.891198 TGCCCCGACCTATAACTAACTATA 58.109 41.667 0.00 0.00 0.00 1.31
2763 3647 5.948162 TGCCCCGACCTATAACTAACTATAG 59.052 44.000 0.00 0.00 33.38 1.31
2764 3648 6.183347 GCCCCGACCTATAACTAACTATAGA 58.817 44.000 6.78 0.00 34.89 1.98
2765 3649 6.660949 GCCCCGACCTATAACTAACTATAGAA 59.339 42.308 6.78 0.00 34.89 2.10
2766 3650 7.341512 GCCCCGACCTATAACTAACTATAGAAT 59.658 40.741 6.78 0.00 34.89 2.40
2767 3651 9.911788 CCCCGACCTATAACTAACTATAGAATA 57.088 37.037 6.78 0.00 34.89 1.75
2834 3728 1.227853 GAGGCGTGACAGTGGGTTT 60.228 57.895 0.00 0.00 0.00 3.27
2843 3737 2.242708 TGACAGTGGGTTTGGTTAGGTT 59.757 45.455 0.00 0.00 0.00 3.50
2844 3738 3.458857 TGACAGTGGGTTTGGTTAGGTTA 59.541 43.478 0.00 0.00 0.00 2.85
2845 3739 4.070009 GACAGTGGGTTTGGTTAGGTTAG 58.930 47.826 0.00 0.00 0.00 2.34
2846 3740 3.181437 ACAGTGGGTTTGGTTAGGTTAGG 60.181 47.826 0.00 0.00 0.00 2.69
2847 3741 3.058341 AGTGGGTTTGGTTAGGTTAGGT 58.942 45.455 0.00 0.00 0.00 3.08
2849 3743 2.108601 TGGGTTTGGTTAGGTTAGGTGG 59.891 50.000 0.00 0.00 0.00 4.61
2851 3745 2.224942 GGTTTGGTTAGGTTAGGTGGCT 60.225 50.000 0.00 0.00 0.00 4.75
2853 3747 0.899720 TGGTTAGGTTAGGTGGCTCG 59.100 55.000 0.00 0.00 0.00 5.03
2854 3748 0.177373 GGTTAGGTTAGGTGGCTCGG 59.823 60.000 0.00 0.00 0.00 4.63
2865 3785 4.918201 GGCTCGGCCGGATCCAAG 62.918 72.222 27.83 15.46 39.62 3.61
2873 3793 1.025041 GCCGGATCCAAGTTTGATCC 58.975 55.000 21.08 21.08 40.96 3.36
2876 3796 2.620115 CCGGATCCAAGTTTGATCCATG 59.380 50.000 27.10 17.44 43.69 3.66
2901 3821 2.024176 ACCGCTGATAATGACACCAC 57.976 50.000 0.00 0.00 0.00 4.16
2903 3823 1.299541 CGCTGATAATGACACCACCC 58.700 55.000 0.00 0.00 0.00 4.61
2947 3870 4.003788 CCCGAAGCACGTGGGAGT 62.004 66.667 18.88 0.00 46.41 3.85
2948 3871 2.642254 CCCGAAGCACGTGGGAGTA 61.642 63.158 18.88 0.00 46.41 2.59
2969 3892 0.178953 AGCACCTTGATTGGTTGGCT 60.179 50.000 0.00 0.00 38.45 4.75
2988 3911 0.325296 TAGTGGTAGGGTCAGCCAGG 60.325 60.000 0.00 0.00 36.17 4.45
2989 3912 3.009115 TGGTAGGGTCAGCCAGGC 61.009 66.667 1.84 1.84 36.17 4.85
2990 3913 3.009115 GGTAGGGTCAGCCAGGCA 61.009 66.667 15.80 0.00 36.17 4.75
2992 3915 3.402681 TAGGGTCAGCCAGGCAGC 61.403 66.667 15.80 2.88 36.17 5.25
3000 3923 2.124942 GCCAGGCAGCAGGAGTAC 60.125 66.667 6.55 0.00 0.00 2.73
3017 4212 4.809426 GGAGTACGTATAAAGCAAGCATGT 59.191 41.667 0.00 0.00 0.00 3.21
3020 4215 4.795970 ACGTATAAAGCAAGCATGTAGC 57.204 40.909 0.00 0.00 46.19 3.58
3087 4303 3.611674 TCAGGTCAACGCCTCGCA 61.612 61.111 0.00 0.00 36.58 5.10
3090 4306 3.195698 GGTCAACGCCTCGCATCC 61.196 66.667 0.00 0.00 0.00 3.51
3110 4326 6.295292 GCATCCTTTTTATTTTCACACCCTCT 60.295 38.462 0.00 0.00 0.00 3.69
3111 4327 7.093945 GCATCCTTTTTATTTTCACACCCTCTA 60.094 37.037 0.00 0.00 0.00 2.43
3112 4328 7.754851 TCCTTTTTATTTTCACACCCTCTAC 57.245 36.000 0.00 0.00 0.00 2.59
3267 5946 3.189287 GTGACTCCAAACATGTGGTGATC 59.811 47.826 0.00 1.17 39.88 2.92
3372 6057 1.006832 CGACCATGTTCGTGGATTCC 58.993 55.000 16.70 0.00 42.02 3.01
3374 6059 2.432444 GACCATGTTCGTGGATTCCAA 58.568 47.619 16.70 0.00 42.02 3.53
3418 6191 3.920093 CTGGCCGTTGGAGGGGTTC 62.920 68.421 0.00 0.00 0.00 3.62
3434 6207 1.951602 GGTTCAGGGTGTGTTTGGTAC 59.048 52.381 0.00 0.00 0.00 3.34
3435 6208 1.951602 GTTCAGGGTGTGTTTGGTACC 59.048 52.381 4.43 4.43 0.00 3.34
3438 6211 0.179040 AGGGTGTGTTTGGTACCGTG 60.179 55.000 7.57 0.00 35.31 4.94
3447 6220 1.195442 TTGGTACCGTGCATGGAGGA 61.195 55.000 31.74 12.99 0.00 3.71
3464 6239 3.004524 GGAGGATGCATGAGCTCAAATTC 59.995 47.826 22.50 13.39 42.74 2.17
3477 6252 3.001330 GCTCAAATTCCGTACTCAATCCG 59.999 47.826 0.00 0.00 0.00 4.18
3491 6266 4.081365 ACTCAATCCGTTTTTGGGTGTTTT 60.081 37.500 0.00 0.00 36.45 2.43
3505 6295 3.366577 GGGTGTTTTGTAGCCCAAATACG 60.367 47.826 0.49 0.00 42.45 3.06
3519 6309 2.154854 AATACGCTCGTAGCATGCAT 57.845 45.000 21.98 7.68 42.58 3.96
3520 6310 1.422388 ATACGCTCGTAGCATGCATG 58.578 50.000 22.70 22.70 42.58 4.06
3534 6325 2.084610 TGCATGAAGAGAGAACACCG 57.915 50.000 0.00 0.00 0.00 4.94
3553 6344 2.125512 AGCATCGTTCGCTGGTCC 60.126 61.111 0.00 0.00 38.60 4.46
3554 6345 2.434185 GCATCGTTCGCTGGTCCA 60.434 61.111 0.00 0.00 0.00 4.02
3555 6346 1.815421 GCATCGTTCGCTGGTCCAT 60.815 57.895 0.00 0.00 0.00 3.41
3566 6357 1.217585 CTGGTCCATATGCACGAGCG 61.218 60.000 0.00 0.00 46.23 5.03
3575 6366 1.084370 ATGCACGAGCGAAGTAAGCC 61.084 55.000 0.00 0.00 46.23 4.35
3678 6484 8.839310 TTTTTCAAGTTTTCAGAAAATGTCCA 57.161 26.923 11.54 0.00 39.93 4.02
3679 6485 8.477984 TTTTCAAGTTTTCAGAAAATGTCCAG 57.522 30.769 11.54 0.65 36.61 3.86
3680 6486 7.403312 TTCAAGTTTTCAGAAAATGTCCAGA 57.597 32.000 11.54 2.75 32.22 3.86
3681 6487 7.403312 TCAAGTTTTCAGAAAATGTCCAGAA 57.597 32.000 11.54 0.00 32.22 3.02
3682 6488 8.010733 TCAAGTTTTCAGAAAATGTCCAGAAT 57.989 30.769 11.54 0.00 32.22 2.40
3683 6489 8.477256 TCAAGTTTTCAGAAAATGTCCAGAATT 58.523 29.630 11.54 0.00 32.22 2.17
3684 6490 9.101655 CAAGTTTTCAGAAAATGTCCAGAATTT 57.898 29.630 11.54 0.00 32.22 1.82
3685 6491 9.671279 AAGTTTTCAGAAAATGTCCAGAATTTT 57.329 25.926 11.54 0.00 39.36 1.82
3887 6860 7.833285 TGCTATAGTACCATTGACATGTCTA 57.167 36.000 25.55 19.23 0.00 2.59
3888 6861 8.245195 TGCTATAGTACCATTGACATGTCTAA 57.755 34.615 25.55 17.74 0.00 2.10
3924 6897 5.230942 TGCTAAACAGAGTCTCAACTTAGC 58.769 41.667 21.44 21.44 37.36 3.09
3925 6898 5.221441 TGCTAAACAGAGTCTCAACTTAGCA 60.221 40.000 24.34 24.34 41.30 3.49
3926 6899 5.872070 GCTAAACAGAGTCTCAACTTAGCAT 59.128 40.000 22.41 0.00 37.05 3.79
3927 6900 6.183360 GCTAAACAGAGTCTCAACTTAGCATG 60.183 42.308 22.41 6.66 37.05 4.06
3928 6901 4.881019 ACAGAGTCTCAACTTAGCATGT 57.119 40.909 1.94 0.00 35.28 3.21
3929 6902 5.220710 ACAGAGTCTCAACTTAGCATGTT 57.779 39.130 1.94 0.00 35.28 2.71
3930 6903 5.233988 ACAGAGTCTCAACTTAGCATGTTC 58.766 41.667 1.94 0.00 35.28 3.18
3931 6904 4.629200 CAGAGTCTCAACTTAGCATGTTCC 59.371 45.833 1.94 0.00 35.28 3.62
3932 6905 4.284490 AGAGTCTCAACTTAGCATGTTCCA 59.716 41.667 1.94 0.00 35.28 3.53
3933 6906 4.573900 AGTCTCAACTTAGCATGTTCCAG 58.426 43.478 0.00 0.00 28.74 3.86
3934 6907 3.126000 GTCTCAACTTAGCATGTTCCAGC 59.874 47.826 0.00 0.00 0.00 4.85
3935 6908 3.076621 CTCAACTTAGCATGTTCCAGCA 58.923 45.455 0.00 0.00 0.00 4.41
3936 6909 2.813754 TCAACTTAGCATGTTCCAGCAC 59.186 45.455 0.00 0.00 0.00 4.40
3937 6910 2.553602 CAACTTAGCATGTTCCAGCACA 59.446 45.455 0.00 0.00 0.00 4.57
3938 6911 2.154462 ACTTAGCATGTTCCAGCACAC 58.846 47.619 0.00 0.00 0.00 3.82
3939 6912 2.153645 CTTAGCATGTTCCAGCACACA 58.846 47.619 0.00 0.00 0.00 3.72
3940 6913 1.522668 TAGCATGTTCCAGCACACAC 58.477 50.000 0.00 0.00 0.00 3.82
3941 6914 1.174712 AGCATGTTCCAGCACACACC 61.175 55.000 0.00 0.00 0.00 4.16
3942 6915 1.959085 CATGTTCCAGCACACACCC 59.041 57.895 0.00 0.00 0.00 4.61
3943 6916 0.538057 CATGTTCCAGCACACACCCT 60.538 55.000 0.00 0.00 0.00 4.34
3944 6917 0.538057 ATGTTCCAGCACACACCCTG 60.538 55.000 0.00 0.00 0.00 4.45
3945 6918 2.203337 TTCCAGCACACACCCTGC 60.203 61.111 0.00 0.00 34.63 4.85
3946 6919 3.790416 TTCCAGCACACACCCTGCC 62.790 63.158 0.00 0.00 35.01 4.85
3947 6920 4.584518 CCAGCACACACCCTGCCA 62.585 66.667 0.00 0.00 35.01 4.92
3948 6921 2.519063 CAGCACACACCCTGCCAA 60.519 61.111 0.00 0.00 35.01 4.52
3949 6922 2.126596 CAGCACACACCCTGCCAAA 61.127 57.895 0.00 0.00 35.01 3.28
3950 6923 2.127232 AGCACACACCCTGCCAAAC 61.127 57.895 0.00 0.00 35.01 2.93
3951 6924 2.422231 GCACACACCCTGCCAAACA 61.422 57.895 0.00 0.00 0.00 2.83
3952 6925 1.954362 GCACACACCCTGCCAAACAA 61.954 55.000 0.00 0.00 0.00 2.83
3953 6926 0.179113 CACACACCCTGCCAAACAAC 60.179 55.000 0.00 0.00 0.00 3.32
3954 6927 0.613292 ACACACCCTGCCAAACAACA 60.613 50.000 0.00 0.00 0.00 3.33
3955 6928 0.179113 CACACCCTGCCAAACAACAC 60.179 55.000 0.00 0.00 0.00 3.32
3956 6929 0.613292 ACACCCTGCCAAACAACACA 60.613 50.000 0.00 0.00 0.00 3.72
3957 6930 0.534412 CACCCTGCCAAACAACACAA 59.466 50.000 0.00 0.00 0.00 3.33
3958 6931 1.066573 CACCCTGCCAAACAACACAAA 60.067 47.619 0.00 0.00 0.00 2.83
3959 6932 1.836802 ACCCTGCCAAACAACACAAAT 59.163 42.857 0.00 0.00 0.00 2.32
3960 6933 2.211806 CCCTGCCAAACAACACAAATG 58.788 47.619 0.00 0.00 0.00 2.32
3961 6934 1.598601 CCTGCCAAACAACACAAATGC 59.401 47.619 0.00 0.00 0.00 3.56
3962 6935 2.277969 CTGCCAAACAACACAAATGCA 58.722 42.857 0.00 0.00 0.00 3.96
3963 6936 2.873472 CTGCCAAACAACACAAATGCAT 59.127 40.909 0.00 0.00 0.00 3.96
3964 6937 4.056740 CTGCCAAACAACACAAATGCATA 58.943 39.130 0.00 0.00 0.00 3.14
3965 6938 4.639334 TGCCAAACAACACAAATGCATAT 58.361 34.783 0.00 0.00 0.00 1.78
3966 6939 5.787380 TGCCAAACAACACAAATGCATATA 58.213 33.333 0.00 0.00 0.00 0.86
3967 6940 5.636965 TGCCAAACAACACAAATGCATATAC 59.363 36.000 0.00 0.00 0.00 1.47
3968 6941 5.868801 GCCAAACAACACAAATGCATATACT 59.131 36.000 0.00 0.00 0.00 2.12
3969 6942 6.034898 GCCAAACAACACAAATGCATATACTC 59.965 38.462 0.00 0.00 0.00 2.59
3970 6943 7.089538 CCAAACAACACAAATGCATATACTCA 58.910 34.615 0.00 0.00 0.00 3.41
3971 6944 7.598118 CCAAACAACACAAATGCATATACTCAA 59.402 33.333 0.00 0.00 0.00 3.02
3972 6945 8.427012 CAAACAACACAAATGCATATACTCAAC 58.573 33.333 0.00 0.00 0.00 3.18
3973 6946 7.213216 ACAACACAAATGCATATACTCAACA 57.787 32.000 0.00 0.00 0.00 3.33
3974 6947 7.829725 ACAACACAAATGCATATACTCAACAT 58.170 30.769 0.00 0.00 0.00 2.71
3975 6948 7.756272 ACAACACAAATGCATATACTCAACATG 59.244 33.333 0.00 0.00 0.00 3.21
3976 6949 7.395190 ACACAAATGCATATACTCAACATGT 57.605 32.000 0.00 0.00 0.00 3.21
3977 6950 7.475015 ACACAAATGCATATACTCAACATGTC 58.525 34.615 0.00 0.00 0.00 3.06
3978 6951 7.337689 ACACAAATGCATATACTCAACATGTCT 59.662 33.333 0.00 0.00 0.00 3.41
3979 6952 7.642586 CACAAATGCATATACTCAACATGTCTG 59.357 37.037 0.00 0.00 0.00 3.51
3980 6953 5.936686 ATGCATATACTCAACATGTCTGC 57.063 39.130 0.00 0.00 0.00 4.26
3981 6954 4.768583 TGCATATACTCAACATGTCTGCA 58.231 39.130 0.00 2.39 34.98 4.41
3982 6955 4.571984 TGCATATACTCAACATGTCTGCAC 59.428 41.667 0.00 0.00 32.65 4.57
3983 6956 4.813161 GCATATACTCAACATGTCTGCACT 59.187 41.667 0.00 0.00 0.00 4.40
3984 6957 5.050499 GCATATACTCAACATGTCTGCACTC 60.050 44.000 0.00 0.00 0.00 3.51
3985 6958 2.916702 ACTCAACATGTCTGCACTCA 57.083 45.000 0.00 0.00 0.00 3.41
3986 6959 3.198409 ACTCAACATGTCTGCACTCAA 57.802 42.857 0.00 0.00 0.00 3.02
3987 6960 2.874701 ACTCAACATGTCTGCACTCAAC 59.125 45.455 0.00 0.00 0.00 3.18
3988 6961 2.874086 CTCAACATGTCTGCACTCAACA 59.126 45.455 0.00 0.00 0.00 3.33
3989 6962 3.479489 TCAACATGTCTGCACTCAACAT 58.521 40.909 0.00 0.00 34.03 2.71
3990 6963 4.640364 TCAACATGTCTGCACTCAACATA 58.360 39.130 0.00 0.00 32.54 2.29
3991 6964 5.247862 TCAACATGTCTGCACTCAACATAT 58.752 37.500 0.00 0.00 32.54 1.78
3992 6965 6.405538 TCAACATGTCTGCACTCAACATATA 58.594 36.000 0.00 0.00 32.54 0.86
3993 6966 7.049754 TCAACATGTCTGCACTCAACATATAT 58.950 34.615 0.00 0.00 32.54 0.86
3994 6967 7.225341 TCAACATGTCTGCACTCAACATATATC 59.775 37.037 0.00 0.00 32.54 1.63
3995 6968 6.585416 ACATGTCTGCACTCAACATATATCA 58.415 36.000 0.00 0.00 32.54 2.15
3996 6969 6.704937 ACATGTCTGCACTCAACATATATCAG 59.295 38.462 0.00 0.00 32.54 2.90
3997 6970 6.469782 TGTCTGCACTCAACATATATCAGA 57.530 37.500 0.00 0.00 0.00 3.27
3998 6971 6.510536 TGTCTGCACTCAACATATATCAGAG 58.489 40.000 0.00 0.00 31.03 3.35
3999 6972 5.925397 GTCTGCACTCAACATATATCAGAGG 59.075 44.000 9.28 2.44 31.03 3.69
4000 6973 5.835280 TCTGCACTCAACATATATCAGAGGA 59.165 40.000 9.28 0.00 0.00 3.71
4001 6974 6.015603 TCTGCACTCAACATATATCAGAGGAG 60.016 42.308 9.28 0.00 0.00 3.69
4002 6975 5.835280 TGCACTCAACATATATCAGAGGAGA 59.165 40.000 9.28 0.00 0.00 3.71
4003 6976 6.324770 TGCACTCAACATATATCAGAGGAGAA 59.675 38.462 9.28 0.00 0.00 2.87
4004 6977 6.644592 GCACTCAACATATATCAGAGGAGAAC 59.355 42.308 9.28 0.00 0.00 3.01
4005 6978 7.685398 GCACTCAACATATATCAGAGGAGAACA 60.685 40.741 9.28 0.00 0.00 3.18
4006 6979 8.200120 CACTCAACATATATCAGAGGAGAACAA 58.800 37.037 9.28 0.00 0.00 2.83
4007 6980 8.200792 ACTCAACATATATCAGAGGAGAACAAC 58.799 37.037 9.28 0.00 0.00 3.32
4008 6981 7.500992 TCAACATATATCAGAGGAGAACAACC 58.499 38.462 0.00 0.00 0.00 3.77
4009 6982 7.125659 TCAACATATATCAGAGGAGAACAACCA 59.874 37.037 0.00 0.00 0.00 3.67
4010 6983 7.623999 ACATATATCAGAGGAGAACAACCAT 57.376 36.000 0.00 0.00 0.00 3.55
4011 6984 7.448420 ACATATATCAGAGGAGAACAACCATG 58.552 38.462 0.00 0.00 0.00 3.66
4012 6985 2.479566 TCAGAGGAGAACAACCATGC 57.520 50.000 0.00 0.00 0.00 4.06
4013 6986 1.980765 TCAGAGGAGAACAACCATGCT 59.019 47.619 0.00 0.00 0.00 3.79
4014 6987 3.173151 TCAGAGGAGAACAACCATGCTA 58.827 45.455 0.00 0.00 0.00 3.49
4015 6988 3.196469 TCAGAGGAGAACAACCATGCTAG 59.804 47.826 0.00 0.00 0.00 3.42
4016 6989 2.503356 AGAGGAGAACAACCATGCTAGG 59.497 50.000 0.00 0.00 0.00 3.02
4017 6990 2.237392 GAGGAGAACAACCATGCTAGGT 59.763 50.000 0.00 0.00 45.91 3.08
4028 7001 3.455910 ACCATGCTAGGTTGAGAATGCTA 59.544 43.478 0.00 0.00 39.34 3.49
4029 7002 3.812053 CCATGCTAGGTTGAGAATGCTAC 59.188 47.826 0.00 0.00 31.75 3.58
4032 7005 3.263170 TGCTAGGTTGAGAATGCTACCAA 59.737 43.478 0.00 0.00 36.34 3.67
4033 7006 4.261801 GCTAGGTTGAGAATGCTACCAAA 58.738 43.478 0.00 0.00 36.34 3.28
4038 7011 4.537015 GTTGAGAATGCTACCAAACACAC 58.463 43.478 0.00 0.00 0.00 3.82
4039 7012 3.146066 TGAGAATGCTACCAAACACACC 58.854 45.455 0.00 0.00 0.00 4.16
4040 7013 2.488153 GAGAATGCTACCAAACACACCC 59.512 50.000 0.00 0.00 0.00 4.61
4052 7025 4.119136 CAAACACACCCTTTGTTTCATCC 58.881 43.478 0.00 0.00 43.71 3.51
4106 7080 6.424207 GCAATACTACTAAGGACTGCAATACC 59.576 42.308 0.00 0.00 0.00 2.73
4114 7088 2.108250 AGGACTGCAATACCCAACAACT 59.892 45.455 0.00 0.00 0.00 3.16
4144 7118 1.179152 CAGGATGGCATCTGCAAACA 58.821 50.000 25.48 0.00 44.36 2.83
4147 7121 0.179156 GATGGCATCTGCAAACACCG 60.179 55.000 20.08 0.00 44.36 4.94
4153 7127 2.796483 ATCTGCAAACACCGCGGCTA 62.796 55.000 28.58 2.91 35.64 3.93
4189 7163 4.952071 TGGAGATGGCATTTTTGACAAA 57.048 36.364 0.00 0.00 0.00 2.83
4279 7254 0.107643 GCTATGAGGGGGTTCTCTGC 59.892 60.000 0.00 0.00 34.98 4.26
4290 7265 1.157585 GTTCTCTGCGGTTTTCCTCC 58.842 55.000 0.00 0.00 37.95 4.30
4293 7268 1.301677 CTCTGCGGTTTTCCTCCTGC 61.302 60.000 0.00 0.00 37.95 4.85
4299 7274 1.539827 CGGTTTTCCTCCTGCGAAATT 59.460 47.619 0.00 0.00 37.95 1.82
4374 7349 1.826385 GTGCATAACAGCCTCCAACT 58.174 50.000 0.00 0.00 0.00 3.16
4388 7363 3.386768 TCCAACTCTCAAGGAGAAACG 57.613 47.619 0.00 0.00 44.45 3.60
4397 7372 4.956700 TCTCAAGGAGAAACGGTGATATCT 59.043 41.667 3.98 0.00 35.59 1.98
4436 7413 1.134220 GGAGAAACGGTGATATGGCCA 60.134 52.381 8.56 8.56 0.00 5.36
4449 7426 1.148216 ATGGCCATGTGCATACCCTA 58.852 50.000 20.04 0.00 43.89 3.53
4638 7660 8.409358 AGAAACACAAACTAGCCAAATAAGAT 57.591 30.769 0.00 0.00 0.00 2.40
4660 7683 0.030638 CCACAACCGGCTGACAAAAG 59.969 55.000 12.82 0.00 0.00 2.27
4923 7956 2.202623 GCGCAGACTCCTACACGG 60.203 66.667 0.30 0.00 0.00 4.94
5043 8076 5.254115 GTCCTCCATAAAACTTTGGCTAGT 58.746 41.667 0.00 0.00 32.80 2.57
5202 8237 7.181305 ACTTTGATTTTTAATTTCCCCCGGTAT 59.819 33.333 0.00 0.00 0.00 2.73
5214 8249 5.990713 TCCCCCGGTATTAAAATTTAGGA 57.009 39.130 0.00 0.00 0.00 2.94
5215 8250 5.693961 TCCCCCGGTATTAAAATTTAGGAC 58.306 41.667 0.00 0.00 0.00 3.85
5216 8251 5.193325 TCCCCCGGTATTAAAATTTAGGACA 59.807 40.000 0.00 0.00 0.00 4.02
5217 8252 5.533528 CCCCCGGTATTAAAATTTAGGACAG 59.466 44.000 0.00 0.00 0.00 3.51
5218 8253 6.124340 CCCCGGTATTAAAATTTAGGACAGT 58.876 40.000 0.00 0.00 0.00 3.55
5219 8254 6.604396 CCCCGGTATTAAAATTTAGGACAGTT 59.396 38.462 0.00 0.00 0.00 3.16
5220 8255 7.415877 CCCCGGTATTAAAATTTAGGACAGTTG 60.416 40.741 0.00 0.00 0.00 3.16
5221 8256 7.121611 CCCGGTATTAAAATTTAGGACAGTTGT 59.878 37.037 0.00 0.00 0.00 3.32
5222 8257 9.165035 CCGGTATTAAAATTTAGGACAGTTGTA 57.835 33.333 0.00 0.00 0.00 2.41
5223 8258 9.977762 CGGTATTAAAATTTAGGACAGTTGTAC 57.022 33.333 0.00 0.00 0.00 2.90
5230 8265 1.813513 AGGACAGTTGTACATGCAGC 58.186 50.000 0.00 0.00 0.00 5.25
5242 8277 1.342174 ACATGCAGCCTTGAACCTTTG 59.658 47.619 0.00 0.00 0.00 2.77
5247 8282 3.126073 GCAGCCTTGAACCTTTGAAAAG 58.874 45.455 0.00 0.00 35.79 2.27
5259 8294 4.843220 CTTTGAAAAGGCATGAGTGAGT 57.157 40.909 0.00 0.00 32.40 3.41
5263 8298 3.953612 TGAAAAGGCATGAGTGAGTGTTT 59.046 39.130 0.00 0.00 0.00 2.83
5264 8299 4.036734 TGAAAAGGCATGAGTGAGTGTTTC 59.963 41.667 0.00 0.00 0.00 2.78
5265 8300 2.191128 AGGCATGAGTGAGTGTTTCC 57.809 50.000 0.00 0.00 0.00 3.13
5266 8301 1.701847 AGGCATGAGTGAGTGTTTCCT 59.298 47.619 0.00 0.00 0.00 3.36
5267 8302 1.808945 GGCATGAGTGAGTGTTTCCTG 59.191 52.381 0.00 0.00 0.00 3.86
5268 8303 2.550855 GGCATGAGTGAGTGTTTCCTGA 60.551 50.000 0.00 0.00 0.00 3.86
5269 8304 3.141398 GCATGAGTGAGTGTTTCCTGAA 58.859 45.455 0.00 0.00 0.00 3.02
5277 8312 3.582647 TGAGTGTTTCCTGAATCCTGCTA 59.417 43.478 0.00 0.00 0.00 3.49
5284 8319 3.027412 TCCTGAATCCTGCTACAGAGTC 58.973 50.000 0.00 0.00 32.44 3.36
5349 8391 6.582636 ACTGATCGTATTTTCTGCTCCATTA 58.417 36.000 0.00 0.00 0.00 1.90
5372 8416 0.041238 AGGACCTGGTGGAGATCGAA 59.959 55.000 2.82 0.00 37.04 3.71
5618 8678 0.246910 GGAAGTTCGGTCAGTCCTCC 59.753 60.000 0.00 0.00 0.00 4.30
5639 8699 1.933181 TGCACTCTGTTCGTTGTTCAG 59.067 47.619 0.00 0.00 0.00 3.02
5640 8700 1.333258 GCACTCTGTTCGTTGTTCAGC 60.333 52.381 0.00 0.00 0.00 4.26
5641 8701 1.933181 CACTCTGTTCGTTGTTCAGCA 59.067 47.619 0.00 0.00 0.00 4.41
5654 8720 4.250116 TGTTCAGCAACAAACACACTTT 57.750 36.364 0.00 0.00 39.69 2.66
5656 8722 4.683781 TGTTCAGCAACAAACACACTTTTC 59.316 37.500 0.00 0.00 39.69 2.29
5669 8735 9.520204 CAAACACACTTTTCTGAAAATATCTGT 57.480 29.630 15.30 11.27 0.00 3.41
5697 8764 4.875544 TTCTACTGTTTGTTGTGCAGTC 57.124 40.909 0.00 0.00 41.84 3.51
5833 8900 2.679336 TGCACTCGGTTTCATCATCATG 59.321 45.455 0.00 0.00 0.00 3.07
5843 8910 6.309980 CGGTTTCATCATCATGTAGATAGCTC 59.690 42.308 0.00 0.00 34.43 4.09
5846 9121 8.494347 GTTTCATCATCATGTAGATAGCTCAAC 58.506 37.037 0.00 0.00 34.43 3.18
5871 9146 1.469703 CAAGCATCCAAATGAGCACGA 59.530 47.619 0.00 0.00 34.61 4.35
5872 9147 1.825090 AGCATCCAAATGAGCACGAA 58.175 45.000 0.00 0.00 34.61 3.85
5897 9172 3.193479 GTGAGTGAACCATTGGGGATTTC 59.807 47.826 7.78 2.38 41.15 2.17
5906 9181 4.217510 CCATTGGGGATTTCTGCATCTTA 58.782 43.478 0.00 0.00 40.01 2.10
5907 9182 4.836736 CCATTGGGGATTTCTGCATCTTAT 59.163 41.667 0.00 0.00 40.01 1.73
6070 9346 4.880886 AAGCCAAAAACAATGCACTTTC 57.119 36.364 0.00 0.00 0.00 2.62
6075 9351 6.072008 AGCCAAAAACAATGCACTTTCTTTTT 60.072 30.769 0.00 0.00 0.00 1.94
6076 9352 7.120432 AGCCAAAAACAATGCACTTTCTTTTTA 59.880 29.630 0.00 0.00 0.00 1.52
6077 9353 7.218014 GCCAAAAACAATGCACTTTCTTTTTAC 59.782 33.333 0.00 0.00 0.00 2.01
6082 9358 9.435688 AAACAATGCACTTTCTTTTTACTTTCT 57.564 25.926 0.00 0.00 0.00 2.52
6083 9359 9.435688 AACAATGCACTTTCTTTTTACTTTCTT 57.564 25.926 0.00 0.00 0.00 2.52
6317 9616 2.664851 ACGCATCACCACCACACG 60.665 61.111 0.00 0.00 0.00 4.49
6419 9725 1.821216 TCTTTGTTGGGAAGATCGCC 58.179 50.000 0.00 0.00 0.00 5.54
6425 9731 2.586357 GGGAAGATCGCCGCTCAC 60.586 66.667 0.00 0.00 0.00 3.51
6545 9851 1.078567 CACCCTCTGCAAGGCTCTC 60.079 63.158 8.85 0.00 44.71 3.20
6569 11259 0.941542 CACCAAGGTAACACCACACG 59.058 55.000 0.00 0.00 41.95 4.49
6574 11264 1.957668 AGGTAACACCACACGTTTCC 58.042 50.000 0.00 0.00 41.95 3.13
6634 11327 3.402628 TCAGTTGACACTAGAAAGCCC 57.597 47.619 0.00 0.00 0.00 5.19
6761 11454 1.880027 GTCAATGAGTGGGTTGTCACC 59.120 52.381 0.00 0.00 43.37 4.02
6788 11481 0.321564 TGGGAGATGCCAACAAGACG 60.322 55.000 0.00 0.00 38.95 4.18
6799 11492 1.166531 AACAAGACGAAGCCAGCCAC 61.167 55.000 0.00 0.00 0.00 5.01
6979 11684 0.586502 CCGATTTGCGCGTTTCTAGC 60.587 55.000 8.43 0.00 39.11 3.42
6986 11691 0.516524 GCGCGTTTCTAGCTTTGTCG 60.517 55.000 8.43 0.00 0.00 4.35
7015 11720 3.645884 CCTGATGTGTGCCTTCTTTTTG 58.354 45.455 0.00 0.00 0.00 2.44
7057 11762 6.029346 AGATTTTTGTTGGAACCTGCATAG 57.971 37.500 0.00 0.00 0.00 2.23
7191 11896 0.034059 CCACTCCCAGCGCCTAATAG 59.966 60.000 2.29 0.00 0.00 1.73
7243 11957 1.142474 GGTTACGACAAACCTCGTGG 58.858 55.000 0.99 0.99 46.28 4.94
7257 11979 0.323629 TCGTGGAAGTAAAGCCCCTG 59.676 55.000 0.00 0.00 0.00 4.45
7260 11982 1.073284 GTGGAAGTAAAGCCCCTGTCA 59.927 52.381 0.00 0.00 0.00 3.58
7273 11995 2.138320 CCCTGTCATGCACATATCGAC 58.862 52.381 0.00 0.00 33.23 4.20
7308 12030 6.058183 AGCGATATACAGAGAATTTTGCCTT 58.942 36.000 0.00 0.00 0.00 4.35
7313 12035 1.619827 CAGAGAATTTTGCCTTGGCCA 59.380 47.619 0.00 0.00 0.00 5.36
7453 12186 2.655090 TGCATTCAACACCTGGAAGA 57.345 45.000 0.00 0.00 34.07 2.87
7491 12224 8.292444 TGTAAATTAAATAACATGCTCTGCCT 57.708 30.769 0.00 0.00 0.00 4.75
7605 12351 4.376008 GCAGTTGTGTTGTGTAGTATGACG 60.376 45.833 0.00 0.00 0.00 4.35
7640 12398 1.340889 ACATTGTTGCTCAACGCCATT 59.659 42.857 8.07 0.00 43.94 3.16
7641 12399 2.224018 ACATTGTTGCTCAACGCCATTT 60.224 40.909 8.07 0.00 43.94 2.32
7642 12400 3.005261 ACATTGTTGCTCAACGCCATTTA 59.995 39.130 8.07 0.00 43.94 1.40
7643 12401 3.717400 TTGTTGCTCAACGCCATTTAA 57.283 38.095 8.07 0.00 43.94 1.52
7674 12432 2.886523 TGTCAAATTCAGACAGGCCTTG 59.113 45.455 0.00 0.00 40.80 3.61
7687 12445 0.451783 GGCCTTGGAATGCAGTAACG 59.548 55.000 0.00 0.00 0.00 3.18
7726 12484 4.524316 TGGAATGCAGTCAAAATTCAGG 57.476 40.909 16.99 0.00 32.96 3.86
7751 12509 3.634448 TGTAGCCTTGCAAGCAAAAGTAA 59.366 39.130 21.43 0.00 35.33 2.24
7753 12511 3.721035 AGCCTTGCAAGCAAAAGTAAAG 58.279 40.909 21.43 4.37 35.33 1.85
7754 12512 2.221749 GCCTTGCAAGCAAAAGTAAAGC 59.778 45.455 21.43 10.76 35.33 3.51
7901 12684 5.858581 CGGAAATGGAAAATGTTGAGACTTC 59.141 40.000 0.00 0.00 0.00 3.01
7911 12694 2.147150 GTTGAGACTTCAGACTTGGCC 58.853 52.381 0.00 0.00 34.15 5.36
7930 12713 3.367498 GGCCACGGCATATACAAACAAAA 60.367 43.478 10.83 0.00 44.11 2.44
7931 12714 4.429108 GCCACGGCATATACAAACAAAAT 58.571 39.130 2.36 0.00 41.49 1.82
7973 12756 7.085746 TGTTAGCATCATGACAAGTTCATTTG 58.914 34.615 0.00 0.00 42.87 2.32
7979 12762 5.830912 TCATGACAAGTTCATTTGGACAAC 58.169 37.500 0.00 0.00 42.87 3.32
7982 12765 4.027572 ACAAGTTCATTTGGACAACACG 57.972 40.909 0.00 0.00 32.32 4.49
7992 12775 4.768130 TTGGACAACACGAAAACAAAGA 57.232 36.364 0.00 0.00 0.00 2.52
8023 12806 0.620556 ATCGTCATGGTTGGCCTCTT 59.379 50.000 3.32 0.00 35.27 2.85
8031 12814 6.064717 GTCATGGTTGGCCTCTTTAATATCT 58.935 40.000 3.32 0.00 35.27 1.98
8036 12819 5.302823 GGTTGGCCTCTTTAATATCTTGCAT 59.697 40.000 3.32 0.00 0.00 3.96
8038 12821 7.308830 GGTTGGCCTCTTTAATATCTTGCATAG 60.309 40.741 3.32 0.00 0.00 2.23
8056 12839 5.945191 TGCATAGATGTGAAGATTTTGGTGA 59.055 36.000 0.00 0.00 0.00 4.02
8059 12842 8.790718 GCATAGATGTGAAGATTTTGGTGATAT 58.209 33.333 0.00 0.00 0.00 1.63
8063 12846 7.977853 AGATGTGAAGATTTTGGTGATATTTGC 59.022 33.333 0.00 0.00 0.00 3.68
8066 12849 6.035327 GTGAAGATTTTGGTGATATTTGCAGC 59.965 38.462 0.00 0.00 0.00 5.25
8071 12854 4.597404 TTGGTGATATTTGCAGCAAACA 57.403 36.364 22.92 12.54 46.77 2.83
8074 12857 6.468333 TGGTGATATTTGCAGCAAACATAT 57.532 33.333 22.92 16.74 40.38 1.78
8092 12875 9.188588 CAAACATATATGGCATGATTCTTTCAC 57.811 33.333 16.96 0.00 37.11 3.18
8129 12912 6.299141 ACCGCATGATTTCCATTCTTATACT 58.701 36.000 0.00 0.00 31.94 2.12
8140 12923 7.807977 TCCATTCTTATACTTCATTTGGAGC 57.192 36.000 0.00 0.00 0.00 4.70
8141 12924 6.772716 TCCATTCTTATACTTCATTTGGAGCC 59.227 38.462 0.00 0.00 0.00 4.70
8143 12926 7.420800 CATTCTTATACTTCATTTGGAGCCAC 58.579 38.462 0.00 0.00 0.00 5.01
8145 12928 6.662755 TCTTATACTTCATTTGGAGCCACAT 58.337 36.000 0.00 0.00 0.00 3.21
8159 12943 0.321346 CCACATGGCCACCCTTTTTC 59.679 55.000 8.16 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.758973 TTTTGGCCACTGCGTCCGA 62.759 57.895 3.88 0.00 38.85 4.55
36 37 0.669619 CTCACTGTTGGCATGTGCAA 59.330 50.000 7.36 0.00 44.36 4.08
51 52 2.626840 GGAAACAGGAGATGAGCTCAC 58.373 52.381 20.97 13.11 45.81 3.51
52 53 1.556911 GGGAAACAGGAGATGAGCTCA 59.443 52.381 20.79 20.79 45.81 4.26
130 142 3.258290 GCTTCTCTACGCAGCCGC 61.258 66.667 0.00 0.00 38.22 6.53
133 145 1.211818 CGGATGCTTCTCTACGCAGC 61.212 60.000 0.00 0.00 41.46 5.25
138 150 1.880675 TCCGATCGGATGCTTCTCTAC 59.119 52.381 32.59 0.00 39.76 2.59
240 252 4.872485 GAGTCGAGCCGAGCGTCG 62.872 72.222 0.00 9.59 36.23 5.12
251 263 2.041115 CAGGACAGGCTCGAGTCGA 61.041 63.158 15.64 15.64 35.63 4.20
255 271 1.536073 TTGGACAGGACAGGCTCGAG 61.536 60.000 8.45 8.45 0.00 4.04
261 277 1.002868 CTGGCTTGGACAGGACAGG 60.003 63.158 9.25 0.00 39.62 4.00
292 308 2.113860 TGTCTTTCTAGTGCCATGGC 57.886 50.000 30.54 30.54 42.35 4.40
469 492 8.499162 CGTAGATGGATATAGAAAAAGCAAAGG 58.501 37.037 0.00 0.00 0.00 3.11
470 493 8.012241 GCGTAGATGGATATAGAAAAAGCAAAG 58.988 37.037 0.00 0.00 0.00 2.77
471 494 7.041372 GGCGTAGATGGATATAGAAAAAGCAAA 60.041 37.037 0.00 0.00 0.00 3.68
472 495 6.426937 GGCGTAGATGGATATAGAAAAAGCAA 59.573 38.462 0.00 0.00 0.00 3.91
473 496 5.932303 GGCGTAGATGGATATAGAAAAAGCA 59.068 40.000 0.00 0.00 0.00 3.91
474 497 5.932303 TGGCGTAGATGGATATAGAAAAAGC 59.068 40.000 0.00 0.00 0.00 3.51
475 498 7.962964 TTGGCGTAGATGGATATAGAAAAAG 57.037 36.000 0.00 0.00 0.00 2.27
481 504 9.464714 GTGTATTATTGGCGTAGATGGATATAG 57.535 37.037 0.00 0.00 0.00 1.31
487 517 5.050363 GTGTGTGTATTATTGGCGTAGATGG 60.050 44.000 0.00 0.00 0.00 3.51
488 518 5.050363 GGTGTGTGTATTATTGGCGTAGATG 60.050 44.000 0.00 0.00 0.00 2.90
495 525 4.380444 CCACTTGGTGTGTGTATTATTGGC 60.380 45.833 0.00 0.00 44.81 4.52
593 623 1.915614 GCCATGAGCCGTGTGACTTG 61.916 60.000 0.00 0.00 34.35 3.16
594 624 1.672356 GCCATGAGCCGTGTGACTT 60.672 57.895 0.00 0.00 34.35 3.01
595 625 2.046892 GCCATGAGCCGTGTGACT 60.047 61.111 0.00 0.00 34.35 3.41
617 647 0.549950 AAGAGATGGGTGCATGGGAG 59.450 55.000 0.00 0.00 0.00 4.30
635 669 0.321564 CATCTGGCGGTTGGTGAGAA 60.322 55.000 0.00 0.00 0.00 2.87
660 694 2.163390 CGTGCGTGATGAGCTCTGG 61.163 63.158 16.19 0.67 35.28 3.86
661 695 2.796425 GCGTGCGTGATGAGCTCTG 61.796 63.158 16.19 0.88 35.28 3.35
662 696 2.507992 GCGTGCGTGATGAGCTCT 60.508 61.111 16.19 0.00 35.28 4.09
663 697 2.810887 TGCGTGCGTGATGAGCTC 60.811 61.111 6.82 6.82 35.28 4.09
708 742 0.107456 CCTCTCGATGGACAATGGGG 59.893 60.000 0.00 0.00 0.00 4.96
721 755 0.309302 AATCGATCGACAGCCTCTCG 59.691 55.000 22.06 0.00 0.00 4.04
726 760 1.215655 CCCGAAATCGATCGACAGCC 61.216 60.000 22.06 9.08 45.48 4.85
745 779 6.639563 TGGCCAAGCTTTTATTTATTTCTCC 58.360 36.000 0.61 0.00 0.00 3.71
749 783 6.013812 TGGTCTGGCCAAGCTTTTATTTATTT 60.014 34.615 7.01 0.00 45.94 1.40
750 784 5.483583 TGGTCTGGCCAAGCTTTTATTTATT 59.516 36.000 7.01 0.00 45.94 1.40
751 785 5.022787 TGGTCTGGCCAAGCTTTTATTTAT 58.977 37.500 7.01 0.00 45.94 1.40
752 786 4.411927 TGGTCTGGCCAAGCTTTTATTTA 58.588 39.130 7.01 0.00 45.94 1.40
809 843 3.150949 CTCCTCCATATGGCCGCA 58.849 61.111 17.58 0.00 34.44 5.69
855 895 1.773052 AGTGGATGGACATGGAGGATG 59.227 52.381 0.00 0.00 38.15 3.51
856 896 2.053244 GAGTGGATGGACATGGAGGAT 58.947 52.381 0.00 0.00 0.00 3.24
857 897 1.008815 AGAGTGGATGGACATGGAGGA 59.991 52.381 0.00 0.00 0.00 3.71
858 898 1.504912 AGAGTGGATGGACATGGAGG 58.495 55.000 0.00 0.00 0.00 4.30
860 900 6.155221 GCTTATATAGAGTGGATGGACATGGA 59.845 42.308 0.00 0.00 0.00 3.41
862 902 6.344500 GGCTTATATAGAGTGGATGGACATG 58.656 44.000 0.00 0.00 0.00 3.21
863 903 5.426833 GGGCTTATATAGAGTGGATGGACAT 59.573 44.000 0.00 0.00 0.00 3.06
864 904 4.777896 GGGCTTATATAGAGTGGATGGACA 59.222 45.833 0.00 0.00 0.00 4.02
865 905 4.142138 CGGGCTTATATAGAGTGGATGGAC 60.142 50.000 0.00 0.00 0.00 4.02
866 906 4.023980 CGGGCTTATATAGAGTGGATGGA 58.976 47.826 0.00 0.00 0.00 3.41
867 907 3.430929 GCGGGCTTATATAGAGTGGATGG 60.431 52.174 0.00 0.00 0.00 3.51
898 953 1.513836 CGCGGGCTAGGTAGGTAGAC 61.514 65.000 0.00 0.00 0.00 2.59
901 956 2.203394 CCGCGGGCTAGGTAGGTA 60.203 66.667 20.10 0.00 0.00 3.08
917 972 3.775654 ACGACTAGCTGGCTGGCC 61.776 66.667 4.43 4.43 0.00 5.36
966 1038 4.115199 GGCGGGTGGCTGGATCTT 62.115 66.667 0.00 0.00 42.94 2.40
1416 1561 2.725008 CTTGCCGCCGGTCAAAAA 59.275 55.556 4.45 0.00 0.00 1.94
1496 1658 1.352017 TCATCCCATTCCATCCATCGG 59.648 52.381 0.00 0.00 0.00 4.18
1500 1662 2.091720 CACCTTCATCCCATTCCATCCA 60.092 50.000 0.00 0.00 0.00 3.41
1512 1674 2.668457 CGACAGCTTGTACACCTTCATC 59.332 50.000 0.00 0.00 0.00 2.92
1625 1791 3.315880 TGGATGGATGGATTGATTGCA 57.684 42.857 0.00 0.00 0.00 4.08
1706 2160 3.353029 TGGAACATGCACGCACGG 61.353 61.111 0.00 0.00 0.00 4.94
1875 2381 3.118454 GCGTCCATGTCACCCGTG 61.118 66.667 0.00 0.00 0.00 4.94
1934 2440 1.064946 TTGCGAACAAAACCAGCCG 59.935 52.632 0.00 0.00 31.21 5.52
1954 2460 2.203337 TGGCAACTGGCAGTCCAC 60.203 61.111 22.31 13.88 46.12 4.02
1961 2469 0.454600 CATCTCATGTGGCAACTGGC 59.545 55.000 0.00 0.00 43.74 4.85
1977 2485 1.227556 ACTTATCACGGCCGGCATC 60.228 57.895 31.76 11.20 0.00 3.91
2059 2569 1.374758 CTTGTCAGTCACGGGCTCC 60.375 63.158 0.00 0.00 0.00 4.70
2080 2590 0.179070 TGCAGGTCAGCAAACACGTA 60.179 50.000 0.00 0.00 42.46 3.57
2081 2591 1.451207 TGCAGGTCAGCAAACACGT 60.451 52.632 0.00 0.00 42.46 4.49
2082 2592 3.419828 TGCAGGTCAGCAAACACG 58.580 55.556 0.00 0.00 42.46 4.49
2090 2600 3.550437 ACCTAGCTTTATGCAGGTCAG 57.450 47.619 0.00 0.00 44.17 3.51
2111 2625 8.652463 CAAAAATAAATCGCGGGAATAGTTTTT 58.348 29.630 22.26 19.93 30.39 1.94
2172 2686 3.997021 ACAGAAATAAAGGAGCGACAGTG 59.003 43.478 0.00 0.00 0.00 3.66
2174 2688 3.372206 CCACAGAAATAAAGGAGCGACAG 59.628 47.826 0.00 0.00 0.00 3.51
2175 2689 3.007506 TCCACAGAAATAAAGGAGCGACA 59.992 43.478 0.00 0.00 0.00 4.35
2178 2705 4.802876 GATCCACAGAAATAAAGGAGCG 57.197 45.455 0.00 0.00 0.00 5.03
2240 2773 2.633509 CCACTGCTTCTGCTTGCCC 61.634 63.158 0.00 0.00 40.48 5.36
2375 3115 3.157252 ATCGCTCCATGCCGGACT 61.157 61.111 5.05 0.00 39.64 3.85
2390 3130 1.817099 CCAGGAAGACGCTGCCATC 60.817 63.158 6.64 0.00 29.53 3.51
2430 3170 1.472878 CGACTGAGTAGCTAAGTGGCA 59.527 52.381 1.25 0.00 34.17 4.92
2431 3171 1.799548 GCGACTGAGTAGCTAAGTGGC 60.800 57.143 10.52 13.18 38.98 5.01
2438 3178 3.827898 GGCGGCGACTGAGTAGCT 61.828 66.667 16.91 0.00 34.70 3.32
2506 3253 1.456892 ACCAGATGGCATGGCATGG 60.457 57.895 36.49 33.03 41.87 3.66
2508 3255 0.260816 AAGACCAGATGGCATGGCAT 59.739 50.000 32.65 32.65 41.87 4.40
2509 3256 0.681887 CAAGACCAGATGGCATGGCA 60.682 55.000 25.52 25.52 41.87 4.92
2510 3257 2.012902 GCAAGACCAGATGGCATGGC 62.013 60.000 13.29 13.29 41.87 4.40
2511 3258 1.389609 GGCAAGACCAGATGGCATGG 61.390 60.000 3.81 4.86 43.87 3.66
2512 3259 0.681887 TGGCAAGACCAGATGGCATG 60.682 55.000 3.81 0.00 46.36 4.06
2513 3260 1.693034 TGGCAAGACCAGATGGCAT 59.307 52.632 0.00 0.00 46.36 4.40
2514 3261 3.169378 TGGCAAGACCAGATGGCA 58.831 55.556 0.00 0.00 46.36 4.92
2522 3269 0.804989 CGGAAGTGAATGGCAAGACC 59.195 55.000 0.00 0.00 39.84 3.85
2523 3270 0.169009 GCGGAAGTGAATGGCAAGAC 59.831 55.000 0.00 0.00 0.00 3.01
2524 3271 0.036732 AGCGGAAGTGAATGGCAAGA 59.963 50.000 0.00 0.00 0.00 3.02
2525 3272 1.737838 TAGCGGAAGTGAATGGCAAG 58.262 50.000 0.00 0.00 0.00 4.01
2534 3281 9.704098 GAAAAAGAATTTACTATAGCGGAAGTG 57.296 33.333 0.00 0.00 37.28 3.16
2547 3294 7.637709 AATTCTGTGGCGAAAAAGAATTTAC 57.362 32.000 9.13 0.00 43.44 2.01
2551 3298 7.206687 TGTTAAATTCTGTGGCGAAAAAGAAT 58.793 30.769 0.00 0.00 40.27 2.40
2553 3300 6.137794 TGTTAAATTCTGTGGCGAAAAAGA 57.862 33.333 0.00 0.00 0.00 2.52
2554 3301 6.475402 ACTTGTTAAATTCTGTGGCGAAAAAG 59.525 34.615 0.00 0.00 0.00 2.27
2555 3302 6.334202 ACTTGTTAAATTCTGTGGCGAAAAA 58.666 32.000 0.00 0.00 0.00 1.94
2560 3312 7.867445 ATAAAACTTGTTAAATTCTGTGGCG 57.133 32.000 0.00 0.00 0.00 5.69
2598 3350 9.657728 AGGCCATTAACCCTACTCTATATATAC 57.342 37.037 5.01 0.00 0.00 1.47
2610 3467 1.575419 ACGTCAGGCCATTAACCCTA 58.425 50.000 5.01 0.00 0.00 3.53
2761 3645 9.305555 GCCACCGGGTATATATTCTATATTCTA 57.694 37.037 6.32 0.00 36.17 2.10
2762 3646 7.234988 GGCCACCGGGTATATATTCTATATTCT 59.765 40.741 6.32 0.00 36.17 2.40
2763 3647 7.015877 TGGCCACCGGGTATATATTCTATATTC 59.984 40.741 0.00 0.00 36.17 1.75
2764 3648 6.847567 TGGCCACCGGGTATATATTCTATATT 59.152 38.462 0.00 0.00 36.17 1.28
2765 3649 6.387127 TGGCCACCGGGTATATATTCTATAT 58.613 40.000 0.00 0.00 36.17 0.86
2766 3650 5.779636 TGGCCACCGGGTATATATTCTATA 58.220 41.667 0.00 0.00 36.17 1.31
2767 3651 4.627015 TGGCCACCGGGTATATATTCTAT 58.373 43.478 0.00 0.00 36.17 1.98
2781 3665 4.758251 TCGCTCACATGGCCACCG 62.758 66.667 8.16 4.64 0.00 4.94
2834 3728 0.899720 CGAGCCACCTAACCTAACCA 59.100 55.000 0.00 0.00 0.00 3.67
2849 3743 3.682292 AACTTGGATCCGGCCGAGC 62.682 63.158 30.73 15.70 42.28 5.03
2851 3745 1.376683 CAAACTTGGATCCGGCCGA 60.377 57.895 30.73 13.82 0.00 5.54
2853 3747 1.025041 GATCAAACTTGGATCCGGCC 58.975 55.000 7.39 0.00 36.09 6.13
2865 3785 2.017049 CGGTTCCTCCATGGATCAAAC 58.983 52.381 16.63 18.04 45.68 2.93
2873 3793 2.620251 TTATCAGCGGTTCCTCCATG 57.380 50.000 0.00 0.00 35.57 3.66
2876 3796 2.158957 TGTCATTATCAGCGGTTCCTCC 60.159 50.000 0.00 0.00 0.00 4.30
2883 3803 1.299541 GGTGGTGTCATTATCAGCGG 58.700 55.000 0.00 0.00 36.29 5.52
2885 3805 1.680338 GGGGTGGTGTCATTATCAGC 58.320 55.000 0.00 0.00 0.00 4.26
2944 3867 3.618690 ACCAATCAAGGTGCTCTACTC 57.381 47.619 0.00 0.00 41.30 2.59
2945 3868 3.560025 CCAACCAATCAAGGTGCTCTACT 60.560 47.826 0.00 0.00 42.25 2.57
2946 3869 2.749621 CCAACCAATCAAGGTGCTCTAC 59.250 50.000 0.00 0.00 42.25 2.59
2947 3870 2.879756 GCCAACCAATCAAGGTGCTCTA 60.880 50.000 0.00 0.00 42.25 2.43
2948 3871 1.915141 CCAACCAATCAAGGTGCTCT 58.085 50.000 0.00 0.00 42.25 4.09
2969 3892 0.325296 CCTGGCTGACCCTACCACTA 60.325 60.000 0.00 0.00 33.59 2.74
2988 3911 2.795470 GCTTTATACGTACTCCTGCTGC 59.205 50.000 0.00 0.00 0.00 5.25
2989 3912 4.041740 TGCTTTATACGTACTCCTGCTG 57.958 45.455 0.00 0.00 0.00 4.41
2990 3913 4.683832 CTTGCTTTATACGTACTCCTGCT 58.316 43.478 0.00 0.00 0.00 4.24
2992 3915 4.430007 TGCTTGCTTTATACGTACTCCTG 58.570 43.478 0.00 0.00 0.00 3.86
2993 3916 4.730949 TGCTTGCTTTATACGTACTCCT 57.269 40.909 0.00 0.00 0.00 3.69
2994 3917 4.809426 ACATGCTTGCTTTATACGTACTCC 59.191 41.667 0.00 0.00 0.00 3.85
3000 3923 4.794248 TGCTACATGCTTGCTTTATACG 57.206 40.909 0.00 0.00 43.37 3.06
3017 4212 6.051717 GGAGCAAGATAAGAAGAACATGCTA 58.948 40.000 0.00 0.00 42.45 3.49
3020 4215 6.726230 CATGGAGCAAGATAAGAAGAACATG 58.274 40.000 0.00 0.00 0.00 3.21
3053 4250 1.188219 TGACCAGAGAGGCCAGTCAC 61.188 60.000 5.01 0.00 43.14 3.67
3087 4303 7.947890 TGTAGAGGGTGTGAAAATAAAAAGGAT 59.052 33.333 0.00 0.00 0.00 3.24
3090 4306 9.810545 TTTTGTAGAGGGTGTGAAAATAAAAAG 57.189 29.630 0.00 0.00 0.00 2.27
3110 4326 8.483758 AGTCTCTCACCTTTTCTACTTTTTGTA 58.516 33.333 0.00 0.00 0.00 2.41
3111 4327 7.339482 AGTCTCTCACCTTTTCTACTTTTTGT 58.661 34.615 0.00 0.00 0.00 2.83
3112 4328 7.793927 AGTCTCTCACCTTTTCTACTTTTTG 57.206 36.000 0.00 0.00 0.00 2.44
3227 5891 0.986019 ACCATGCCTGGAATCCGGTA 60.986 55.000 15.66 5.45 46.37 4.02
3246 5910 3.181446 TGATCACCACATGTTTGGAGTCA 60.181 43.478 9.25 7.04 39.24 3.41
3247 5911 3.411446 TGATCACCACATGTTTGGAGTC 58.589 45.455 9.25 4.92 39.24 3.36
3267 5946 1.482621 CTAGCTACGCCGCACACATG 61.483 60.000 0.00 0.00 0.00 3.21
3305 5990 2.034558 CCGAATGCAACAAAACAGGAGT 59.965 45.455 0.00 0.00 0.00 3.85
3418 6191 0.179040 ACGGTACCAAACACACCCTG 60.179 55.000 13.54 0.00 0.00 4.45
3447 6220 2.372264 ACGGAATTTGAGCTCATGCAT 58.628 42.857 19.04 7.49 42.74 3.96
3464 6239 2.160813 CCCAAAAACGGATTGAGTACGG 59.839 50.000 0.00 0.00 38.95 4.02
3477 6252 3.199677 GGGCTACAAAACACCCAAAAAC 58.800 45.455 0.00 0.00 42.33 2.43
3491 6266 0.533491 ACGAGCGTATTTGGGCTACA 59.467 50.000 0.00 0.00 40.16 2.74
3500 6290 1.794701 CATGCATGCTACGAGCGTATT 59.205 47.619 20.33 0.00 46.26 1.89
3505 6295 1.526041 CTCTTCATGCATGCTACGAGC 59.474 52.381 22.25 0.00 42.82 5.03
3519 6309 0.319900 GCTGCGGTGTTCTCTCTTCA 60.320 55.000 0.00 0.00 0.00 3.02
3520 6310 0.319900 TGCTGCGGTGTTCTCTCTTC 60.320 55.000 0.00 0.00 0.00 2.87
3549 6340 0.529773 TTCGCTCGTGCATATGGACC 60.530 55.000 20.22 6.87 39.64 4.46
3553 6344 2.097202 GCTTACTTCGCTCGTGCATATG 60.097 50.000 10.43 0.00 39.64 1.78
3554 6345 2.128035 GCTTACTTCGCTCGTGCATAT 58.872 47.619 10.43 0.00 39.64 1.78
3555 6346 1.556564 GCTTACTTCGCTCGTGCATA 58.443 50.000 10.43 0.00 39.64 3.14
3566 6357 1.494824 AACACGTCGTGGCTTACTTC 58.505 50.000 27.77 0.00 37.94 3.01
3657 6463 7.403312 TTCTGGACATTTTCTGAAAACTTGA 57.597 32.000 17.06 7.84 32.37 3.02
3658 6464 8.652810 AATTCTGGACATTTTCTGAAAACTTG 57.347 30.769 17.06 14.50 32.37 3.16
3855 6828 7.710907 TGTCAATGGTACTATAGCAATCAGTTC 59.289 37.037 0.00 0.00 39.89 3.01
3918 6891 2.154462 GTGTGCTGGAACATGCTAAGT 58.846 47.619 0.00 0.00 38.20 2.24
3919 6892 2.095567 GTGTGTGCTGGAACATGCTAAG 60.096 50.000 0.00 0.00 38.20 2.18
3920 6893 1.879380 GTGTGTGCTGGAACATGCTAA 59.121 47.619 0.00 0.00 38.20 3.09
3921 6894 1.522668 GTGTGTGCTGGAACATGCTA 58.477 50.000 0.00 0.00 38.20 3.49
3922 6895 1.174712 GGTGTGTGCTGGAACATGCT 61.175 55.000 0.00 0.00 38.20 3.79
3923 6896 1.286880 GGTGTGTGCTGGAACATGC 59.713 57.895 0.00 0.00 38.20 4.06
3924 6897 0.538057 AGGGTGTGTGCTGGAACATG 60.538 55.000 0.00 0.00 38.20 3.21
3925 6898 0.538057 CAGGGTGTGTGCTGGAACAT 60.538 55.000 0.00 0.00 38.20 2.71
3926 6899 1.152984 CAGGGTGTGTGCTGGAACA 60.153 57.895 0.00 0.00 0.00 3.18
3927 6900 2.555547 GCAGGGTGTGTGCTGGAAC 61.556 63.158 0.00 0.00 37.96 3.62
3928 6901 2.203337 GCAGGGTGTGTGCTGGAA 60.203 61.111 0.00 0.00 37.96 3.53
3929 6902 4.269523 GGCAGGGTGTGTGCTGGA 62.270 66.667 0.00 0.00 40.97 3.86
3930 6903 4.584518 TGGCAGGGTGTGTGCTGG 62.585 66.667 0.00 0.00 40.97 4.85
3931 6904 2.126596 TTTGGCAGGGTGTGTGCTG 61.127 57.895 0.00 0.00 40.97 4.41
3932 6905 2.127232 GTTTGGCAGGGTGTGTGCT 61.127 57.895 0.00 0.00 40.97 4.40
3933 6906 1.954362 TTGTTTGGCAGGGTGTGTGC 61.954 55.000 0.00 0.00 40.42 4.57
3934 6907 0.179113 GTTGTTTGGCAGGGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
3935 6908 0.613292 TGTTGTTTGGCAGGGTGTGT 60.613 50.000 0.00 0.00 0.00 3.72
3936 6909 0.179113 GTGTTGTTTGGCAGGGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
3937 6910 0.613292 TGTGTTGTTTGGCAGGGTGT 60.613 50.000 0.00 0.00 0.00 4.16
3938 6911 0.534412 TTGTGTTGTTTGGCAGGGTG 59.466 50.000 0.00 0.00 0.00 4.61
3939 6912 1.270907 TTTGTGTTGTTTGGCAGGGT 58.729 45.000 0.00 0.00 0.00 4.34
3940 6913 2.211806 CATTTGTGTTGTTTGGCAGGG 58.788 47.619 0.00 0.00 0.00 4.45
3941 6914 1.598601 GCATTTGTGTTGTTTGGCAGG 59.401 47.619 0.00 0.00 0.00 4.85
3942 6915 2.277969 TGCATTTGTGTTGTTTGGCAG 58.722 42.857 0.00 0.00 0.00 4.85
3943 6916 2.391616 TGCATTTGTGTTGTTTGGCA 57.608 40.000 0.00 0.00 0.00 4.92
3944 6917 5.868801 AGTATATGCATTTGTGTTGTTTGGC 59.131 36.000 3.54 0.00 0.00 4.52
3945 6918 7.089538 TGAGTATATGCATTTGTGTTGTTTGG 58.910 34.615 3.54 0.00 0.00 3.28
3946 6919 8.427012 GTTGAGTATATGCATTTGTGTTGTTTG 58.573 33.333 3.54 0.00 0.00 2.93
3947 6920 8.140628 TGTTGAGTATATGCATTTGTGTTGTTT 58.859 29.630 3.54 0.00 0.00 2.83
3948 6921 7.656412 TGTTGAGTATATGCATTTGTGTTGTT 58.344 30.769 3.54 0.00 0.00 2.83
3949 6922 7.213216 TGTTGAGTATATGCATTTGTGTTGT 57.787 32.000 3.54 0.00 0.00 3.32
3950 6923 7.756272 ACATGTTGAGTATATGCATTTGTGTTG 59.244 33.333 3.54 0.00 0.00 3.33
3951 6924 7.829725 ACATGTTGAGTATATGCATTTGTGTT 58.170 30.769 3.54 0.00 0.00 3.32
3952 6925 7.337689 AGACATGTTGAGTATATGCATTTGTGT 59.662 33.333 3.54 0.00 0.00 3.72
3953 6926 7.642586 CAGACATGTTGAGTATATGCATTTGTG 59.357 37.037 3.54 0.00 0.00 3.33
3954 6927 7.680350 GCAGACATGTTGAGTATATGCATTTGT 60.680 37.037 3.54 0.00 0.00 2.83
3955 6928 6.635641 GCAGACATGTTGAGTATATGCATTTG 59.364 38.462 3.54 0.00 0.00 2.32
3956 6929 6.319405 TGCAGACATGTTGAGTATATGCATTT 59.681 34.615 3.54 0.00 36.33 2.32
3957 6930 5.824097 TGCAGACATGTTGAGTATATGCATT 59.176 36.000 3.54 0.00 36.33 3.56
3958 6931 5.237996 GTGCAGACATGTTGAGTATATGCAT 59.762 40.000 3.79 3.79 42.42 3.96
3959 6932 4.571984 GTGCAGACATGTTGAGTATATGCA 59.428 41.667 0.00 0.00 38.70 3.96
3960 6933 4.813161 AGTGCAGACATGTTGAGTATATGC 59.187 41.667 0.00 0.00 0.00 3.14
3961 6934 6.044682 TGAGTGCAGACATGTTGAGTATATG 58.955 40.000 0.00 0.00 0.00 1.78
3962 6935 6.225981 TGAGTGCAGACATGTTGAGTATAT 57.774 37.500 0.00 0.00 0.00 0.86
3963 6936 5.659440 TGAGTGCAGACATGTTGAGTATA 57.341 39.130 0.00 0.00 0.00 1.47
3964 6937 4.541973 TGAGTGCAGACATGTTGAGTAT 57.458 40.909 0.00 0.00 0.00 2.12
3965 6938 4.058124 GTTGAGTGCAGACATGTTGAGTA 58.942 43.478 0.00 0.00 0.00 2.59
3966 6939 2.874701 GTTGAGTGCAGACATGTTGAGT 59.125 45.455 0.00 0.00 0.00 3.41
3967 6940 2.874086 TGTTGAGTGCAGACATGTTGAG 59.126 45.455 0.00 0.00 0.00 3.02
3968 6941 2.916640 TGTTGAGTGCAGACATGTTGA 58.083 42.857 0.00 0.00 0.00 3.18
3969 6942 3.909776 ATGTTGAGTGCAGACATGTTG 57.090 42.857 0.00 1.64 33.08 3.33
3970 6943 7.049754 TGATATATGTTGAGTGCAGACATGTT 58.950 34.615 0.00 5.61 35.72 2.71
3971 6944 6.585416 TGATATATGTTGAGTGCAGACATGT 58.415 36.000 0.00 0.00 35.72 3.21
3972 6945 6.927381 TCTGATATATGTTGAGTGCAGACATG 59.073 38.462 12.59 0.00 35.72 3.21
3973 6946 7.059202 TCTGATATATGTTGAGTGCAGACAT 57.941 36.000 9.15 9.15 37.70 3.06
3974 6947 6.462067 CCTCTGATATATGTTGAGTGCAGACA 60.462 42.308 0.00 0.00 0.00 3.41
3975 6948 5.925397 CCTCTGATATATGTTGAGTGCAGAC 59.075 44.000 0.00 0.00 0.00 3.51
3976 6949 5.835280 TCCTCTGATATATGTTGAGTGCAGA 59.165 40.000 0.00 0.00 0.00 4.26
3977 6950 6.015603 TCTCCTCTGATATATGTTGAGTGCAG 60.016 42.308 0.00 0.00 0.00 4.41
3978 6951 5.835280 TCTCCTCTGATATATGTTGAGTGCA 59.165 40.000 0.00 0.00 0.00 4.57
3979 6952 6.338214 TCTCCTCTGATATATGTTGAGTGC 57.662 41.667 0.00 0.00 0.00 4.40
3980 6953 7.720442 TGTTCTCCTCTGATATATGTTGAGTG 58.280 38.462 0.00 0.00 0.00 3.51
3981 6954 7.904558 TGTTCTCCTCTGATATATGTTGAGT 57.095 36.000 0.00 0.00 0.00 3.41
3982 6955 7.655328 GGTTGTTCTCCTCTGATATATGTTGAG 59.345 40.741 0.00 0.00 0.00 3.02
3983 6956 7.125659 TGGTTGTTCTCCTCTGATATATGTTGA 59.874 37.037 0.00 0.00 0.00 3.18
3984 6957 7.275183 TGGTTGTTCTCCTCTGATATATGTTG 58.725 38.462 0.00 0.00 0.00 3.33
3985 6958 7.437713 TGGTTGTTCTCCTCTGATATATGTT 57.562 36.000 0.00 0.00 0.00 2.71
3986 6959 7.448420 CATGGTTGTTCTCCTCTGATATATGT 58.552 38.462 0.00 0.00 0.00 2.29
3987 6960 6.370994 GCATGGTTGTTCTCCTCTGATATATG 59.629 42.308 0.00 0.00 0.00 1.78
3988 6961 6.271857 AGCATGGTTGTTCTCCTCTGATATAT 59.728 38.462 0.00 0.00 0.00 0.86
3989 6962 5.604231 AGCATGGTTGTTCTCCTCTGATATA 59.396 40.000 0.00 0.00 0.00 0.86
3990 6963 4.411540 AGCATGGTTGTTCTCCTCTGATAT 59.588 41.667 0.00 0.00 0.00 1.63
3991 6964 3.776969 AGCATGGTTGTTCTCCTCTGATA 59.223 43.478 0.00 0.00 0.00 2.15
3992 6965 2.575279 AGCATGGTTGTTCTCCTCTGAT 59.425 45.455 0.00 0.00 0.00 2.90
3993 6966 1.980765 AGCATGGTTGTTCTCCTCTGA 59.019 47.619 0.00 0.00 0.00 3.27
3994 6967 2.486472 AGCATGGTTGTTCTCCTCTG 57.514 50.000 0.00 0.00 0.00 3.35
3995 6968 2.503356 CCTAGCATGGTTGTTCTCCTCT 59.497 50.000 1.12 0.00 0.00 3.69
3996 6969 2.237392 ACCTAGCATGGTTGTTCTCCTC 59.763 50.000 1.12 0.00 36.89 3.71
3997 6970 2.269940 ACCTAGCATGGTTGTTCTCCT 58.730 47.619 1.12 0.00 36.89 3.69
3998 6971 2.789409 ACCTAGCATGGTTGTTCTCC 57.211 50.000 1.12 0.00 36.89 3.71
4006 6979 2.240667 AGCATTCTCAACCTAGCATGGT 59.759 45.455 1.62 1.62 43.11 3.55
4007 6980 2.928334 AGCATTCTCAACCTAGCATGG 58.072 47.619 0.00 0.00 0.00 3.66
4008 6981 3.812053 GGTAGCATTCTCAACCTAGCATG 59.188 47.826 0.00 0.00 0.00 4.06
4009 6982 3.455910 TGGTAGCATTCTCAACCTAGCAT 59.544 43.478 0.00 0.00 34.49 3.79
4010 6983 2.837591 TGGTAGCATTCTCAACCTAGCA 59.162 45.455 0.00 0.00 36.34 3.49
4011 6984 3.543680 TGGTAGCATTCTCAACCTAGC 57.456 47.619 0.00 0.00 32.99 3.42
4012 6985 5.122396 GTGTTTGGTAGCATTCTCAACCTAG 59.878 44.000 0.00 0.00 32.99 3.02
4013 6986 5.001232 GTGTTTGGTAGCATTCTCAACCTA 58.999 41.667 0.00 0.00 32.99 3.08
4014 6987 3.821033 GTGTTTGGTAGCATTCTCAACCT 59.179 43.478 0.00 0.00 32.99 3.50
4015 6988 3.568007 TGTGTTTGGTAGCATTCTCAACC 59.432 43.478 0.00 0.00 0.00 3.77
4016 6989 4.537015 GTGTGTTTGGTAGCATTCTCAAC 58.463 43.478 0.00 0.00 0.00 3.18
4017 6990 3.568007 GGTGTGTTTGGTAGCATTCTCAA 59.432 43.478 0.00 0.00 0.00 3.02
4018 6991 3.146066 GGTGTGTTTGGTAGCATTCTCA 58.854 45.455 0.00 0.00 0.00 3.27
4019 6992 2.488153 GGGTGTGTTTGGTAGCATTCTC 59.512 50.000 0.00 0.00 0.00 2.87
4020 6993 2.108250 AGGGTGTGTTTGGTAGCATTCT 59.892 45.455 0.00 0.00 0.00 2.40
4021 6994 2.514803 AGGGTGTGTTTGGTAGCATTC 58.485 47.619 0.00 0.00 0.00 2.67
4022 6995 2.675658 AGGGTGTGTTTGGTAGCATT 57.324 45.000 0.00 0.00 0.00 3.56
4028 7001 2.900546 TGAAACAAAGGGTGTGTTTGGT 59.099 40.909 7.23 0.00 46.50 3.67
4029 7002 3.601443 TGAAACAAAGGGTGTGTTTGG 57.399 42.857 7.23 0.00 46.50 3.28
4032 7005 3.132111 GTGGATGAAACAAAGGGTGTGTT 59.868 43.478 0.00 0.00 40.60 3.32
4033 7006 2.693074 GTGGATGAAACAAAGGGTGTGT 59.307 45.455 0.00 0.00 40.60 3.72
4038 7011 3.891366 AGTCTTGTGGATGAAACAAAGGG 59.109 43.478 0.00 0.00 37.10 3.95
4039 7012 6.127897 GGATAGTCTTGTGGATGAAACAAAGG 60.128 42.308 0.00 0.00 37.10 3.11
4040 7013 6.402550 CGGATAGTCTTGTGGATGAAACAAAG 60.403 42.308 0.00 0.00 37.10 2.77
4052 7025 4.100707 TCGTAAACCGGATAGTCTTGTG 57.899 45.455 9.46 0.00 37.11 3.33
4081 7055 6.424207 GGTATTGCAGTCCTTAGTAGTATTGC 59.576 42.308 0.00 0.00 0.00 3.56
4106 7080 1.008538 GCCAGCGAACAGTTGTTGG 60.009 57.895 1.62 11.68 38.56 3.77
4114 7088 2.046023 CATCCTGGCCAGCGAACA 60.046 61.111 28.39 8.10 0.00 3.18
4139 7113 3.027170 CTGCTAGCCGCGGTGTTTG 62.027 63.158 28.70 14.41 43.27 2.93
4140 7114 2.742372 CTGCTAGCCGCGGTGTTT 60.742 61.111 28.70 12.68 43.27 2.83
4147 7121 1.439679 ACACTAAAACTGCTAGCCGC 58.560 50.000 13.29 0.00 39.77 6.53
4153 7127 4.520492 CCATCTCCAAACACTAAAACTGCT 59.480 41.667 0.00 0.00 0.00 4.24
4158 7132 6.418057 AAATGCCATCTCCAAACACTAAAA 57.582 33.333 0.00 0.00 0.00 1.52
4227 7202 5.422214 AGATCTGACGGTGGTAATTTTCT 57.578 39.130 0.00 0.00 0.00 2.52
4240 7215 4.818642 AGCCATATGATCAAGATCTGACG 58.181 43.478 3.65 0.00 36.69 4.35
4279 7254 1.165270 ATTTCGCAGGAGGAAAACCG 58.835 50.000 0.00 0.00 37.00 4.44
4299 7274 2.769663 ACCCTAATGTTATCTGGCGACA 59.230 45.455 0.00 0.00 39.59 4.35
4312 7287 8.044908 ACCATGTTGTTTAGTAGTACCCTAATG 58.955 37.037 0.00 0.20 0.00 1.90
4354 7329 0.447801 GTTGGAGGCTGTTATGCACG 59.552 55.000 0.00 0.00 34.04 5.34
4366 7341 3.669536 GTTTCTCCTTGAGAGTTGGAGG 58.330 50.000 8.19 0.00 45.36 4.30
4374 7349 4.956700 AGATATCACCGTTTCTCCTTGAGA 59.043 41.667 5.32 0.00 36.86 3.27
4604 7623 5.704053 GCTAGTTTGTGTTTCTAGCCCTTTA 59.296 40.000 10.99 0.00 46.04 1.85
4923 7956 2.668834 GCCCGAGTTAGCGAGACATATC 60.669 54.545 0.00 0.00 0.00 1.63
5043 8076 2.224257 GCACCTTTTTCTTGATTGCCCA 60.224 45.455 0.00 0.00 0.00 5.36
5105 8138 3.686016 ACAAAGCGTAATTGGACAGGAT 58.314 40.909 0.00 0.00 32.02 3.24
5192 8225 5.193325 TGTCCTAAATTTTAATACCGGGGGA 59.807 40.000 6.32 0.00 0.00 4.81
5202 8237 8.851145 TGCATGTACAACTGTCCTAAATTTTAA 58.149 29.630 0.00 0.00 0.00 1.52
5211 8246 1.611673 GGCTGCATGTACAACTGTCCT 60.612 52.381 0.00 0.00 0.00 3.85
5214 8249 1.881973 CAAGGCTGCATGTACAACTGT 59.118 47.619 0.00 0.00 0.00 3.55
5215 8250 2.153645 TCAAGGCTGCATGTACAACTG 58.846 47.619 0.00 0.00 0.00 3.16
5216 8251 2.554032 GTTCAAGGCTGCATGTACAACT 59.446 45.455 0.00 0.00 0.00 3.16
5217 8252 2.351738 GGTTCAAGGCTGCATGTACAAC 60.352 50.000 0.00 0.00 0.00 3.32
5218 8253 1.885887 GGTTCAAGGCTGCATGTACAA 59.114 47.619 0.00 0.00 0.00 2.41
5219 8254 1.073763 AGGTTCAAGGCTGCATGTACA 59.926 47.619 0.00 0.00 0.00 2.90
5220 8255 1.826385 AGGTTCAAGGCTGCATGTAC 58.174 50.000 0.50 4.07 0.00 2.90
5221 8256 2.557924 CAAAGGTTCAAGGCTGCATGTA 59.442 45.455 0.50 0.00 0.00 2.29
5222 8257 1.342174 CAAAGGTTCAAGGCTGCATGT 59.658 47.619 0.50 0.00 0.00 3.21
5223 8258 1.614903 TCAAAGGTTCAAGGCTGCATG 59.385 47.619 0.50 0.00 0.00 4.06
5224 8259 1.999648 TCAAAGGTTCAAGGCTGCAT 58.000 45.000 0.50 0.00 0.00 3.96
5225 8260 1.774110 TTCAAAGGTTCAAGGCTGCA 58.226 45.000 0.50 0.00 0.00 4.41
5242 8277 4.540824 GAAACACTCACTCATGCCTTTTC 58.459 43.478 0.00 0.00 0.00 2.29
5247 8282 1.808945 CAGGAAACACTCACTCATGCC 59.191 52.381 0.00 0.00 0.00 4.40
5255 8290 2.373169 AGCAGGATTCAGGAAACACTCA 59.627 45.455 0.00 0.00 0.00 3.41
5259 8294 3.582647 TCTGTAGCAGGATTCAGGAAACA 59.417 43.478 0.00 0.00 31.51 2.83
5263 8298 3.027412 GACTCTGTAGCAGGATTCAGGA 58.973 50.000 0.00 0.00 31.51 3.86
5264 8299 3.030291 AGACTCTGTAGCAGGATTCAGG 58.970 50.000 0.00 0.00 31.51 3.86
5265 8300 4.431809 CAAGACTCTGTAGCAGGATTCAG 58.568 47.826 0.00 0.00 31.51 3.02
5266 8301 3.196469 CCAAGACTCTGTAGCAGGATTCA 59.804 47.826 0.00 0.00 31.51 2.57
5267 8302 3.449018 TCCAAGACTCTGTAGCAGGATTC 59.551 47.826 0.00 0.00 31.51 2.52
5268 8303 3.196685 GTCCAAGACTCTGTAGCAGGATT 59.803 47.826 0.00 0.00 31.51 3.01
5269 8304 2.763448 GTCCAAGACTCTGTAGCAGGAT 59.237 50.000 0.00 0.00 31.51 3.24
5277 8312 1.709578 TCTGCTGTCCAAGACTCTGT 58.290 50.000 0.00 0.00 33.15 3.41
5284 8319 0.393537 GGGGTGATCTGCTGTCCAAG 60.394 60.000 0.00 0.00 0.00 3.61
5349 8391 2.122768 GATCTCCACCAGGTCCTGAAT 58.877 52.381 21.23 5.08 32.44 2.57
5372 8416 2.988839 GCCCTTCCACCTCTGGCAT 61.989 63.158 0.00 0.00 41.76 4.40
5618 8678 1.933181 TGAACAACGAACAGAGTGCAG 59.067 47.619 0.00 0.00 0.00 4.41
5639 8699 5.837586 TTTCAGAAAAGTGTGTTTGTTGC 57.162 34.783 0.00 0.00 0.00 4.17
5643 8703 9.520204 ACAGATATTTTCAGAAAAGTGTGTTTG 57.480 29.630 13.71 8.05 33.22 2.93
5669 8735 6.989759 TGCACAACAAACAGTAGAAAGAGATA 59.010 34.615 0.00 0.00 0.00 1.98
5678 8744 4.342772 GTTGACTGCACAACAAACAGTAG 58.657 43.478 13.66 0.00 44.40 2.57
5813 8880 2.679837 ACATGATGATGAAACCGAGTGC 59.320 45.455 0.00 0.00 33.36 4.40
5833 8900 3.801594 GCTTGAGCAGTTGAGCTATCTAC 59.198 47.826 0.00 0.00 46.75 2.59
5871 9146 2.224867 CCCCAATGGTTCACTCACTCTT 60.225 50.000 0.00 0.00 0.00 2.85
5872 9147 1.352352 CCCCAATGGTTCACTCACTCT 59.648 52.381 0.00 0.00 0.00 3.24
5886 9161 6.251471 CCTATAAGATGCAGAAATCCCCAAT 58.749 40.000 0.00 0.00 0.00 3.16
5897 9172 1.338200 GGCGGTCCCTATAAGATGCAG 60.338 57.143 0.00 0.00 0.00 4.41
5906 9181 3.152400 GACACCGGCGGTCCCTAT 61.152 66.667 31.82 12.46 31.02 2.57
5907 9182 4.371417 AGACACCGGCGGTCCCTA 62.371 66.667 31.82 0.00 35.89 3.53
6007 9282 0.321671 CGAACTTCCAGCCCTTCAGA 59.678 55.000 0.00 0.00 0.00 3.27
6082 9358 9.449719 GGTTTGGTTATTTCTGATAGAGAAGAA 57.550 33.333 0.00 0.00 41.86 2.52
6083 9359 8.047310 GGGTTTGGTTATTTCTGATAGAGAAGA 58.953 37.037 0.00 0.00 41.86 2.87
6132 9426 1.086067 CACGCACAGATCCGAGCATT 61.086 55.000 0.00 0.00 0.00 3.56
6228 9522 5.660460 ACCAACATTTTCTTGAACAGGTTC 58.340 37.500 5.23 5.23 39.91 3.62
6317 9616 5.824904 AATGTCAGTCAATAAGATGGTGC 57.175 39.130 0.00 0.00 0.00 5.01
6347 9653 2.309528 ACGACACTTTCTGCACAGAA 57.690 45.000 8.99 8.99 44.94 3.02
6518 9824 0.535335 TGCAGAGGGTGATAACGGTC 59.465 55.000 0.00 0.00 0.00 4.79
6545 9851 1.002659 TGGTGTTACCTTGGTGATCCG 59.997 52.381 2.03 0.00 39.58 4.18
6593 11283 8.094798 ACTGAATGTAACAAACGATACATGTT 57.905 30.769 2.30 0.00 40.81 2.71
6601 11291 5.583061 AGTGTCAACTGAATGTAACAAACGA 59.417 36.000 0.00 0.00 34.48 3.85
6634 11327 5.709164 ACCAGATGAAATGAACTGAAAGAGG 59.291 40.000 0.00 0.00 37.43 3.69
6761 11454 2.042686 TGGCATCTCCCAATTTCTCG 57.957 50.000 0.00 0.00 30.32 4.04
6788 11481 0.107654 ATACTTCCGTGGCTGGCTTC 60.108 55.000 2.00 0.00 0.00 3.86
6799 11492 4.747108 CCTTCACAGCATCTAATACTTCCG 59.253 45.833 0.00 0.00 0.00 4.30
6857 11550 8.947055 ATCTTATTCTTCTCTTCTTGAGCTTC 57.053 34.615 0.00 0.00 42.38 3.86
6872 11565 9.343539 GCTTACTTGTCCCATAATCTTATTCTT 57.656 33.333 0.00 0.00 0.00 2.52
6979 11684 5.163723 ACACATCAGGCATTATTCGACAAAG 60.164 40.000 0.00 0.00 0.00 2.77
6986 11691 2.954318 AGGCACACATCAGGCATTATTC 59.046 45.455 0.00 0.00 0.00 1.75
7015 11720 2.558795 TCTCTGAGCAGTTGTACCTGAC 59.441 50.000 0.00 0.00 34.23 3.51
7238 11952 0.323629 CAGGGGCTTTACTTCCACGA 59.676 55.000 0.00 0.00 0.00 4.35
7243 11957 1.745653 GCATGACAGGGGCTTTACTTC 59.254 52.381 0.00 0.00 0.00 3.01
7257 11979 4.301628 TCTGATGTCGATATGTGCATGAC 58.698 43.478 0.00 0.00 0.00 3.06
7260 11982 4.696455 TGTTCTGATGTCGATATGTGCAT 58.304 39.130 0.00 0.00 0.00 3.96
7273 11995 7.756558 TCTCTGTATATCGCTATGTTCTGATG 58.243 38.462 0.00 0.00 0.00 3.07
7304 12026 3.628646 ATCTGACCGTGGCCAAGGC 62.629 63.158 34.48 26.30 41.06 4.35
7308 12030 0.327924 ATCAAATCTGACCGTGGCCA 59.672 50.000 0.00 0.00 33.30 5.36
7313 12035 2.039746 TGGTTGGATCAAATCTGACCGT 59.960 45.455 0.00 0.00 37.16 4.83
7605 12351 8.519492 AGCAACAATGTACATTTACATGTTTC 57.481 30.769 18.50 13.60 46.45 2.78
7674 12432 5.344933 GTCCAAATTTTCGTTACTGCATTCC 59.655 40.000 0.00 0.00 0.00 3.01
7687 12445 6.128472 GCATTCCAACATCAGTCCAAATTTTC 60.128 38.462 0.00 0.00 0.00 2.29
7726 12484 0.244450 TTGCTTGCAAGGCTACATGC 59.756 50.000 27.10 11.99 42.86 4.06
7751 12509 6.775708 TGAGTAAAAGGTTATACCACAGCTT 58.224 36.000 0.00 0.00 41.95 3.74
7753 12511 7.443259 TTTGAGTAAAAGGTTATACCACAGC 57.557 36.000 0.00 0.00 41.95 4.40
7901 12684 0.464373 ATATGCCGTGGCCAAGTCTG 60.464 55.000 17.81 3.51 41.09 3.51
7911 12694 6.587990 TGGAAATTTTGTTTGTATATGCCGTG 59.412 34.615 0.00 0.00 0.00 4.94
7956 12739 5.359292 TGTTGTCCAAATGAACTTGTCATGA 59.641 36.000 0.00 0.00 46.80 3.07
7973 12756 3.128068 ACCTCTTTGTTTTCGTGTTGTCC 59.872 43.478 0.00 0.00 0.00 4.02
7979 12762 3.545426 GGTCGAACCTCTTTGTTTTCGTG 60.545 47.826 0.00 0.00 41.24 4.35
7982 12765 2.946990 TGGGTCGAACCTCTTTGTTTTC 59.053 45.455 22.56 0.00 38.64 2.29
8013 12796 5.835113 TGCAAGATATTAAAGAGGCCAAC 57.165 39.130 5.01 0.00 0.00 3.77
8031 12814 6.433716 TCACCAAAATCTTCACATCTATGCAA 59.566 34.615 0.00 0.00 0.00 4.08
8038 12821 7.760794 TGCAAATATCACCAAAATCTTCACATC 59.239 33.333 0.00 0.00 0.00 3.06
8056 12839 6.995364 TGCCATATATGTTTGCTGCAAATAT 58.005 32.000 30.73 30.73 38.39 1.28
8059 12842 4.732672 TGCCATATATGTTTGCTGCAAA 57.267 36.364 22.84 22.84 0.00 3.68
8061 12844 3.890147 TCATGCCATATATGTTTGCTGCA 59.110 39.130 11.73 12.16 0.00 4.41
8062 12845 4.508461 TCATGCCATATATGTTTGCTGC 57.492 40.909 11.73 7.12 0.00 5.25
8063 12846 6.920817 AGAATCATGCCATATATGTTTGCTG 58.079 36.000 11.73 8.17 0.00 4.41
8066 12849 9.188588 GTGAAAGAATCATGCCATATATGTTTG 57.811 33.333 11.73 6.28 40.97 2.93
8140 12923 0.321346 GAAAAAGGGTGGCCATGTGG 59.679 55.000 9.72 0.00 38.53 4.17
8141 12924 1.341080 AGAAAAAGGGTGGCCATGTG 58.659 50.000 9.72 0.00 0.00 3.21
8143 12926 3.140623 CAAAAGAAAAAGGGTGGCCATG 58.859 45.455 9.72 0.00 0.00 3.66
8145 12928 2.472029 TCAAAAGAAAAAGGGTGGCCA 58.528 42.857 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.