Multiple sequence alignment - TraesCS3D01G502800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G502800 chr3D 100.000 4875 0 0 1 4875 591096804 591091930 0.000000e+00 9003
1 TraesCS3D01G502800 chr3D 93.697 3189 180 13 791 3965 590836433 590839614 0.000000e+00 4756
2 TraesCS3D01G502800 chr3D 98.091 681 13 0 4195 4875 591066520 591065840 0.000000e+00 1186
3 TraesCS3D01G502800 chr3D 98.091 681 13 0 4195 4875 591070685 591070005 0.000000e+00 1186
4 TraesCS3D01G502800 chr3D 97.944 681 14 0 4195 4875 591067047 591066367 0.000000e+00 1181
5 TraesCS3D01G502800 chr3D 97.944 681 14 0 4195 4875 591069631 591068951 0.000000e+00 1181
6 TraesCS3D01G502800 chr3D 97.944 681 14 0 4195 4875 591079294 591078614 0.000000e+00 1181
7 TraesCS3D01G502800 chr3D 97.944 681 14 0 4195 4875 591079821 591079141 0.000000e+00 1181
8 TraesCS3D01G502800 chr3D 97.944 681 14 0 4195 4875 591080348 591079668 0.000000e+00 1181
9 TraesCS3D01G502800 chr3D 97.944 681 14 0 4195 4875 591083996 591083316 0.000000e+00 1181
10 TraesCS3D01G502800 chr3D 87.500 256 21 8 8 261 590835238 590835484 7.990000e-73 285
11 TraesCS3D01G502800 chr3A 92.589 3171 215 15 809 3965 721321184 721324348 0.000000e+00 4536
12 TraesCS3D01G502800 chr3A 88.217 959 97 9 3000 3943 721301768 721302725 0.000000e+00 1131
13 TraesCS3D01G502800 chr3A 87.826 230 22 4 1 229 721320579 721320803 1.040000e-66 265
14 TraesCS3D01G502800 chrUn 97.944 681 14 0 4195 4875 347731344 347732024 0.000000e+00 1181
15 TraesCS3D01G502800 chr3B 88.657 670 70 5 3281 3945 790788228 790788896 0.000000e+00 811
16 TraesCS3D01G502800 chr3B 83.159 671 98 5 2554 3209 790787507 790788177 2.510000e-167 599
17 TraesCS3D01G502800 chr2A 85.445 371 51 3 2189 2557 354394945 354395314 2.750000e-102 383
18 TraesCS3D01G502800 chr2A 82.927 246 39 3 2554 2798 354401475 354401718 8.220000e-53 219


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G502800 chr3D 591091930 591096804 4874 True 9003.0 9003 100.0000 1 4875 1 chr3D.!!$R1 4874
1 TraesCS3D01G502800 chr3D 590835238 590839614 4376 False 2520.5 4756 90.5985 8 3965 2 chr3D.!!$F1 3957
2 TraesCS3D01G502800 chr3D 591065840 591070685 4845 True 1183.5 1186 98.0175 4195 4875 4 chr3D.!!$R2 680
3 TraesCS3D01G502800 chr3D 591078614 591083996 5382 True 1181.0 1181 97.9440 4195 4875 4 chr3D.!!$R3 680
4 TraesCS3D01G502800 chr3A 721320579 721324348 3769 False 2400.5 4536 90.2075 1 3965 2 chr3A.!!$F2 3964
5 TraesCS3D01G502800 chr3A 721301768 721302725 957 False 1131.0 1131 88.2170 3000 3943 1 chr3A.!!$F1 943
6 TraesCS3D01G502800 chrUn 347731344 347732024 680 False 1181.0 1181 97.9440 4195 4875 1 chrUn.!!$F1 680
7 TraesCS3D01G502800 chr3B 790787507 790788896 1389 False 705.0 811 85.9080 2554 3945 2 chr3B.!!$F1 1391

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
778 975 0.034756 GCAACAATGGGGGACAAACC 59.965 55.000 0.00 0.00 38.08 3.27 F
1419 1913 0.476771 AGGTTCCACCATGTTCCGTT 59.523 50.000 0.00 0.00 41.95 4.44 F
1420 1914 1.133606 AGGTTCCACCATGTTCCGTTT 60.134 47.619 0.00 0.00 41.95 3.60 F
2487 2991 1.322538 ATGGATTGTTCAAGCCGGGC 61.323 55.000 12.11 12.11 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2581 3085 0.310854 GTTTGGACAGTTCAAGGCCG 59.689 55.000 0.0 0.0 0.00 6.13 R
2924 3428 0.109132 CAAAATCTGCTTCGTGGCCC 60.109 55.000 0.0 0.0 0.00 5.80 R
2929 3433 2.421424 GCTGGATCAAAATCTGCTTCGT 59.579 45.455 0.0 0.0 32.55 3.85 R
4077 4638 0.036765 TCGCTTCGGCAACTAATGGT 60.037 50.000 0.0 0.0 41.88 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 1.526225 ATCGATGGACGCGGAGAGA 60.526 57.895 12.47 2.08 42.26 3.10
76 77 1.511318 ATCGATGGACGCGGAGAGAG 61.511 60.000 12.47 0.00 42.26 3.20
77 78 2.026879 GATGGACGCGGAGAGAGC 59.973 66.667 12.47 0.00 0.00 4.09
84 85 4.863925 GCGGAGAGAGCGCAGGAC 62.864 72.222 11.47 0.00 0.00 3.85
93 94 3.414700 GCGCAGGACGGTTCACTG 61.415 66.667 0.30 0.00 43.93 3.66
94 95 2.738521 CGCAGGACGGTTCACTGG 60.739 66.667 9.43 0.00 38.44 4.00
160 161 0.827368 GGCCAAGAATCTCTCTCCGT 59.173 55.000 0.00 0.00 31.02 4.69
161 162 1.208293 GGCCAAGAATCTCTCTCCGTT 59.792 52.381 0.00 0.00 31.02 4.44
192 193 1.804151 CTCCGAAATTTCCAGCGAACA 59.196 47.619 12.54 0.00 0.00 3.18
253 254 0.102120 CTCCGTCACTGGCATCTCTC 59.898 60.000 0.00 0.00 0.00 3.20
258 259 2.378038 GTCACTGGCATCTCTCTCTCT 58.622 52.381 0.00 0.00 0.00 3.10
259 260 2.358898 GTCACTGGCATCTCTCTCTCTC 59.641 54.545 0.00 0.00 0.00 3.20
260 261 2.241941 TCACTGGCATCTCTCTCTCTCT 59.758 50.000 0.00 0.00 0.00 3.10
261 262 2.620115 CACTGGCATCTCTCTCTCTCTC 59.380 54.545 0.00 0.00 0.00 3.20
262 263 2.511218 ACTGGCATCTCTCTCTCTCTCT 59.489 50.000 0.00 0.00 0.00 3.10
263 264 3.144506 CTGGCATCTCTCTCTCTCTCTC 58.855 54.545 0.00 0.00 0.00 3.20
264 265 2.779430 TGGCATCTCTCTCTCTCTCTCT 59.221 50.000 0.00 0.00 0.00 3.10
265 266 3.181451 TGGCATCTCTCTCTCTCTCTCTC 60.181 52.174 0.00 0.00 0.00 3.20
266 267 3.072184 GGCATCTCTCTCTCTCTCTCTCT 59.928 52.174 0.00 0.00 0.00 3.10
267 268 4.314121 GCATCTCTCTCTCTCTCTCTCTC 58.686 52.174 0.00 0.00 0.00 3.20
268 269 4.040217 GCATCTCTCTCTCTCTCTCTCTCT 59.960 50.000 0.00 0.00 0.00 3.10
269 270 5.782047 CATCTCTCTCTCTCTCTCTCTCTC 58.218 50.000 0.00 0.00 0.00 3.20
270 271 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
271 272 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
272 273 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
273 274 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
274 275 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
275 276 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
276 277 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
277 278 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
278 279 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
279 280 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
280 281 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
281 282 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
282 283 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
283 284 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
284 285 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
285 286 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
292 293 3.069586 TCTCTCTCTCTCTCTCATCCGAC 59.930 52.174 0.00 0.00 0.00 4.79
298 299 0.579630 CTCTCTCATCCGACGACGAG 59.420 60.000 9.28 0.00 42.66 4.18
330 331 2.825836 GGCTGTGCTTCGGGGATG 60.826 66.667 0.00 0.00 0.00 3.51
331 332 2.825836 GCTGTGCTTCGGGGATGG 60.826 66.667 0.00 0.00 0.00 3.51
332 333 2.989639 CTGTGCTTCGGGGATGGA 59.010 61.111 0.00 0.00 0.00 3.41
333 334 1.528824 CTGTGCTTCGGGGATGGAT 59.471 57.895 0.00 0.00 0.00 3.41
334 335 0.533755 CTGTGCTTCGGGGATGGATC 60.534 60.000 0.00 0.00 0.00 3.36
335 336 0.982852 TGTGCTTCGGGGATGGATCT 60.983 55.000 0.00 0.00 0.00 2.75
336 337 0.250081 GTGCTTCGGGGATGGATCTC 60.250 60.000 0.00 0.00 0.00 2.75
337 338 1.005630 GCTTCGGGGATGGATCTCG 60.006 63.158 0.00 0.00 0.00 4.04
360 363 4.928140 TACGGGCCGGATCCCCTC 62.928 72.222 31.78 0.00 43.56 4.30
369 372 1.768077 GGATCCCCTCCCCTCACTG 60.768 68.421 0.00 0.00 38.19 3.66
370 373 1.768077 GATCCCCTCCCCTCACTGG 60.768 68.421 0.00 0.00 0.00 4.00
402 405 5.460091 GCTTTTACTTCTTGCTTGAAACTGG 59.540 40.000 0.00 0.00 0.00 4.00
405 408 3.620488 ACTTCTTGCTTGAAACTGGTCA 58.380 40.909 0.00 0.00 0.00 4.02
435 438 3.842007 AGGCTTCTCTCATCCATCTTG 57.158 47.619 0.00 0.00 0.00 3.02
451 454 4.442192 CCATCTTGTACTTCTGCCTAGTCC 60.442 50.000 0.00 0.00 0.00 3.85
461 464 4.803098 TCTGCCTAGTCCACTTTAACTC 57.197 45.455 0.00 0.00 0.00 3.01
462 465 4.157246 TCTGCCTAGTCCACTTTAACTCA 58.843 43.478 0.00 0.00 0.00 3.41
463 466 4.777896 TCTGCCTAGTCCACTTTAACTCAT 59.222 41.667 0.00 0.00 0.00 2.90
464 467 5.955959 TCTGCCTAGTCCACTTTAACTCATA 59.044 40.000 0.00 0.00 0.00 2.15
466 469 6.582636 TGCCTAGTCCACTTTAACTCATATG 58.417 40.000 0.00 0.00 0.00 1.78
467 470 6.156256 TGCCTAGTCCACTTTAACTCATATGT 59.844 38.462 1.90 0.00 0.00 2.29
468 471 7.048512 GCCTAGTCCACTTTAACTCATATGTT 58.951 38.462 1.90 0.00 0.00 2.71
471 474 9.436957 CTAGTCCACTTTAACTCATATGTTGTT 57.563 33.333 16.46 16.46 0.00 2.83
473 476 9.131791 AGTCCACTTTAACTCATATGTTGTTTT 57.868 29.630 17.10 3.45 0.00 2.43
474 477 9.394477 GTCCACTTTAACTCATATGTTGTTTTC 57.606 33.333 17.10 3.06 0.00 2.29
475 478 9.349713 TCCACTTTAACTCATATGTTGTTTTCT 57.650 29.630 17.10 2.28 0.00 2.52
476 479 9.965824 CCACTTTAACTCATATGTTGTTTTCTT 57.034 29.630 17.10 2.01 0.00 2.52
498 551 9.632807 TTCTTCAAATTTTTCTTTCTTGAACGA 57.367 25.926 0.00 0.00 33.62 3.85
515 568 3.998797 AGGCTGGCCTCATATGCT 58.001 55.556 8.50 0.00 44.43 3.79
517 570 1.666365 AGGCTGGCCTCATATGCTAT 58.334 50.000 8.50 0.00 44.43 2.97
518 571 1.991070 AGGCTGGCCTCATATGCTATT 59.009 47.619 8.50 0.00 44.43 1.73
521 574 3.192212 GGCTGGCCTCATATGCTATTTTC 59.808 47.826 3.32 0.00 0.00 2.29
522 575 3.192212 GCTGGCCTCATATGCTATTTTCC 59.808 47.826 3.32 0.00 0.00 3.13
526 579 4.507335 GGCCTCATATGCTATTTTCCCTGA 60.507 45.833 0.00 0.00 0.00 3.86
528 581 5.624159 CCTCATATGCTATTTTCCCTGACA 58.376 41.667 0.00 0.00 0.00 3.58
533 586 3.942829 TGCTATTTTCCCTGACAGAGTG 58.057 45.455 3.32 0.00 0.00 3.51
537 607 0.318441 TTTCCCTGACAGAGTGCTCG 59.682 55.000 3.32 0.00 34.09 5.03
562 632 2.496899 ACTGGAATAAGGCCACACAG 57.503 50.000 5.01 6.93 0.00 3.66
572 648 0.179000 GGCCACACAGTAGGAGGATG 59.821 60.000 0.00 0.00 0.00 3.51
594 670 8.586570 GATGTATATCCAGCTGCTGTATTATC 57.413 38.462 26.41 18.74 0.00 1.75
600 676 4.162131 TCCAGCTGCTGTATTATCTTCACA 59.838 41.667 26.41 0.00 0.00 3.58
604 680 6.259387 CAGCTGCTGTATTATCTTCACATGAA 59.741 38.462 21.21 0.00 0.00 2.57
605 681 6.825213 AGCTGCTGTATTATCTTCACATGAAA 59.175 34.615 0.00 0.00 33.07 2.69
606 682 7.337689 AGCTGCTGTATTATCTTCACATGAAAA 59.662 33.333 0.00 0.00 33.07 2.29
607 683 7.970061 GCTGCTGTATTATCTTCACATGAAAAA 59.030 33.333 0.00 0.00 33.07 1.94
632 708 6.808321 AAACTGGAGTAGGCTTATGTGATA 57.192 37.500 0.00 0.00 0.00 2.15
642 718 9.332502 AGTAGGCTTATGTGATATATCTACTCG 57.667 37.037 13.79 0.43 32.19 4.18
666 742 6.128795 CGATTAAACCTGAACAGTCTGAGAAC 60.129 42.308 6.91 0.00 0.00 3.01
670 746 3.456277 ACCTGAACAGTCTGAGAACCTTT 59.544 43.478 6.91 0.00 0.00 3.11
681 758 8.023706 CAGTCTGAGAACCTTTTAAATTTAGGC 58.976 37.037 5.54 0.00 32.08 3.93
689 766 9.713713 GAACCTTTTAAATTTAGGCCAATGTAA 57.286 29.630 5.01 0.00 32.08 2.41
704 781 9.120538 AGGCCAATGTAACTTGTAATAACTATG 57.879 33.333 5.01 0.00 0.00 2.23
730 927 4.762289 ATCTCTACATTCTGTTGGGGAC 57.238 45.455 0.00 0.00 0.00 4.46
744 941 2.829023 TGGGGACGAACCTAATCTCTT 58.171 47.619 0.00 0.00 38.98 2.85
745 942 3.178865 TGGGGACGAACCTAATCTCTTT 58.821 45.455 0.00 0.00 38.98 2.52
746 943 3.585732 TGGGGACGAACCTAATCTCTTTT 59.414 43.478 0.00 0.00 38.98 2.27
776 973 1.691434 GAAGCAACAATGGGGGACAAA 59.309 47.619 0.00 0.00 0.00 2.83
778 975 0.034756 GCAACAATGGGGGACAAACC 59.965 55.000 0.00 0.00 38.08 3.27
780 977 2.883026 CAACAATGGGGGACAAACCTA 58.117 47.619 0.00 0.00 38.98 3.08
781 978 3.235200 CAACAATGGGGGACAAACCTAA 58.765 45.455 0.00 0.00 38.98 2.69
782 979 3.837731 CAACAATGGGGGACAAACCTAAT 59.162 43.478 0.00 0.00 38.98 1.73
783 980 3.708451 ACAATGGGGGACAAACCTAATC 58.292 45.455 0.00 0.00 38.98 1.75
784 981 3.336694 ACAATGGGGGACAAACCTAATCT 59.663 43.478 0.00 0.00 38.98 2.40
785 982 3.953542 ATGGGGGACAAACCTAATCTC 57.046 47.619 0.00 0.00 38.98 2.75
786 983 2.929301 TGGGGGACAAACCTAATCTCT 58.071 47.619 0.00 0.00 38.98 3.10
787 984 4.083080 TGGGGGACAAACCTAATCTCTA 57.917 45.455 0.00 0.00 38.98 2.43
788 985 3.778629 TGGGGGACAAACCTAATCTCTAC 59.221 47.826 0.00 0.00 38.98 2.59
789 986 3.778629 GGGGGACAAACCTAATCTCTACA 59.221 47.826 0.00 0.00 38.98 2.74
793 990 6.326843 GGGGACAAACCTAATCTCTACATAGT 59.673 42.308 0.00 0.00 38.98 2.12
794 991 7.508296 GGGGACAAACCTAATCTCTACATAGTA 59.492 40.741 0.00 0.00 38.98 1.82
796 993 9.352191 GGACAAACCTAATCTCTACATAGTAGA 57.648 37.037 6.70 6.70 35.41 2.59
817 1311 4.546570 GAAACATAAAAGCGGTTTCAGCT 58.453 39.130 13.74 0.00 45.91 4.24
830 1324 4.651994 GGTTTCAGCTGATTGATACGTTG 58.348 43.478 19.04 0.00 32.09 4.10
845 1339 6.699366 TGATACGTTGGTATTTTGTACTGGA 58.301 36.000 0.00 0.00 39.44 3.86
846 1340 6.591062 TGATACGTTGGTATTTTGTACTGGAC 59.409 38.462 0.00 0.00 39.44 4.02
851 1345 6.091169 CGTTGGTATTTTGTACTGGACGTATT 59.909 38.462 0.00 0.00 0.00 1.89
866 1360 8.088981 ACTGGACGTATTTGACCAATATATCTC 58.911 37.037 0.00 0.00 33.39 2.75
876 1370 7.307131 TGACCAATATATCTCATGCTTCTCA 57.693 36.000 0.00 0.00 0.00 3.27
881 1375 8.451748 CCAATATATCTCATGCTTCTCACAATG 58.548 37.037 0.00 0.00 0.00 2.82
883 1377 8.774890 ATATATCTCATGCTTCTCACAATGTC 57.225 34.615 0.00 0.00 0.00 3.06
911 1405 4.747810 CAGGTCCAAATTTTGATAGGCAC 58.252 43.478 10.72 0.00 0.00 5.01
919 1413 6.146021 CCAAATTTTGATAGGCACAGTTCAAC 59.854 38.462 10.72 0.00 0.00 3.18
920 1414 6.403866 AATTTTGATAGGCACAGTTCAACA 57.596 33.333 0.00 0.00 0.00 3.33
926 1420 5.534278 TGATAGGCACAGTTCAACATTTTGA 59.466 36.000 0.00 0.00 40.14 2.69
928 1422 7.392953 TGATAGGCACAGTTCAACATTTTGATA 59.607 33.333 0.00 0.00 41.50 2.15
956 1450 6.932356 TGTCAATTGAAGGATTATCAGCTC 57.068 37.500 10.35 0.00 0.00 4.09
960 1454 4.736126 TTGAAGGATTATCAGCTCGTGA 57.264 40.909 0.00 0.00 40.38 4.35
984 1478 1.808945 CATCACCTTGTTCACTGCCTC 59.191 52.381 0.00 0.00 0.00 4.70
995 1489 1.620819 TCACTGCCTCCTTTCACTCTC 59.379 52.381 0.00 0.00 0.00 3.20
1010 1504 4.910195 TCACTCTCATACATGGCTGTTTT 58.090 39.130 0.00 0.00 36.79 2.43
1014 1508 3.119884 TCTCATACATGGCTGTTTTTGCG 60.120 43.478 0.00 0.00 36.79 4.85
1029 1523 2.245795 TTGCGCTCATTGATTTCGTG 57.754 45.000 9.73 0.00 0.00 4.35
1036 1530 4.259570 CGCTCATTGATTTCGTGACTAGTG 60.260 45.833 0.00 0.00 0.00 2.74
1059 1553 1.949525 GTGGCATCGCACTTATGGAAT 59.050 47.619 0.00 0.00 0.00 3.01
1079 1573 6.183360 TGGAATCCTGTGATTACACGTATGAT 60.183 38.462 0.00 0.00 45.05 2.45
1164 1658 3.516700 CCAGGAAGCAGGAAATCCAAATT 59.483 43.478 1.67 0.00 38.89 1.82
1179 1673 8.567285 AAATCCAAATTCGTCTTATGAACTCT 57.433 30.769 0.00 0.00 0.00 3.24
1238 1732 0.609131 TGGCTAGAAAAGGTGGCAGC 60.609 55.000 9.02 9.02 0.00 5.25
1245 1739 3.350833 AGAAAAGGTGGCAGCAATAGAG 58.649 45.455 20.04 0.00 0.00 2.43
1256 1750 3.864583 GCAGCAATAGAGAGTGAAGTGAG 59.135 47.826 0.00 0.00 0.00 3.51
1278 1772 2.573009 TGAGATGAAACATGGGCAGAGA 59.427 45.455 0.00 0.00 0.00 3.10
1315 1809 6.404074 CCAGTCTTTCAGCTATTGGTCAAATC 60.404 42.308 0.00 0.00 0.00 2.17
1419 1913 0.476771 AGGTTCCACCATGTTCCGTT 59.523 50.000 0.00 0.00 41.95 4.44
1420 1914 1.133606 AGGTTCCACCATGTTCCGTTT 60.134 47.619 0.00 0.00 41.95 3.60
1563 2057 4.985538 AGACCACTTTGCTCAGGAAAATA 58.014 39.130 0.00 0.00 0.00 1.40
1580 2074 8.143835 CAGGAAAATAAACAATCACTTCTTGGT 58.856 33.333 0.00 0.00 0.00 3.67
1599 2096 7.458397 TCTTGGTTGTAAATGAAGACTATGGT 58.542 34.615 0.00 0.00 0.00 3.55
1673 2170 4.142859 GCTTCAAGCAGACATCTCTGAAAG 60.143 45.833 3.89 1.44 46.32 2.62
1892 2389 3.136763 GTGGACATATGGATGCTCACAG 58.863 50.000 7.80 0.00 38.31 3.66
1923 2420 2.821969 CCTGGAATGTTTGGACCAAGAG 59.178 50.000 7.07 0.00 31.85 2.85
1926 2423 4.739793 TGGAATGTTTGGACCAAGAGAAT 58.260 39.130 7.07 0.00 0.00 2.40
2003 2500 5.064441 AGGATTGAAAAGTTAGCACATGC 57.936 39.130 0.00 0.00 42.49 4.06
2009 2506 4.337836 TGAAAAGTTAGCACATGCAGTTGA 59.662 37.500 6.64 0.00 45.16 3.18
2078 2575 6.138761 GTGCAATGTCTACAAAGAAGTCTTG 58.861 40.000 0.00 0.00 36.12 3.02
2133 2630 5.021033 AGAAGTCTCGCATTCATGAGATT 57.979 39.130 0.00 0.00 42.73 2.40
2207 2711 3.814283 GGCAGGATAAGCAGATCAAAGAG 59.186 47.826 0.00 0.00 0.00 2.85
2357 2861 7.331791 ACTCCATTATTGAGTACTTGAAGGAC 58.668 38.462 0.00 0.00 41.17 3.85
2487 2991 1.322538 ATGGATTGTTCAAGCCGGGC 61.323 55.000 12.11 12.11 0.00 6.13
2581 3085 5.163713 GCAATTACATCACTGAACTTCCTCC 60.164 44.000 0.00 0.00 0.00 4.30
2641 3145 1.541588 ACAGAATTTTCGGCTCAAGGC 59.458 47.619 0.00 0.00 40.90 4.35
2759 3263 3.056821 TGGTTGAACTCCAGTATCTCACG 60.057 47.826 0.00 0.00 0.00 4.35
2802 3306 4.634012 TTATTGCCTATTGCTATCGGGT 57.366 40.909 1.13 0.00 42.00 5.28
2849 3353 8.206126 TGGACATCAGCTATATGGATTTCTTA 57.794 34.615 11.71 0.00 0.00 2.10
2896 3400 4.559153 ACAAATTTGTCAATGCTACAGGC 58.441 39.130 18.13 0.00 36.50 4.85
2991 3495 8.912787 TGATGAGTTTAGAGTCGAAGAATTAC 57.087 34.615 0.00 0.00 39.69 1.89
3134 3653 9.490379 CTTACACTCACCTTAACAGAAAGTATT 57.510 33.333 0.00 0.00 0.00 1.89
3157 3676 7.531857 TTTTTGTTCTGAATGTAATGGGCTA 57.468 32.000 0.00 0.00 0.00 3.93
3194 3720 3.127548 ACTTCTGCATTATGAACAAGCCG 59.872 43.478 0.00 0.00 0.00 5.52
3333 3887 6.017192 AGAACTTATCAACTGGTAGACCTGA 58.983 40.000 12.10 2.42 38.22 3.86
3400 3956 5.050644 TGCTGTGATAAATGAAGCAGTTG 57.949 39.130 0.00 0.00 38.88 3.16
3440 3996 6.984474 TGTTATTGACACGGAAGGAAGATATC 59.016 38.462 0.00 0.00 32.00 1.63
3443 3999 5.011090 TGACACGGAAGGAAGATATCAAG 57.989 43.478 5.32 0.00 0.00 3.02
3454 4010 7.361457 AGGAAGATATCAAGTACCGATTCAA 57.639 36.000 5.32 0.00 0.00 2.69
3555 4115 6.455360 TCCTTCTTTGGAATACATTGATGC 57.545 37.500 0.00 0.00 32.39 3.91
3568 4128 1.742324 TTGATGCGTTTGCTTGCCCA 61.742 50.000 0.00 0.00 43.34 5.36
3569 4129 1.734117 GATGCGTTTGCTTGCCCAC 60.734 57.895 0.00 0.00 43.34 4.61
3570 4130 3.556543 ATGCGTTTGCTTGCCCACG 62.557 57.895 8.66 8.66 43.34 4.94
3571 4131 3.959975 GCGTTTGCTTGCCCACGA 61.960 61.111 14.94 0.00 38.39 4.35
3613 4173 3.367395 GGCAAATGGGTAAACTGAAGAGC 60.367 47.826 0.00 0.00 0.00 4.09
3655 4215 2.900546 GTGGGATAATCTCGAGTGGGAT 59.099 50.000 13.13 2.05 0.00 3.85
3669 4229 1.880027 GTGGGATGACGAAAGCAGTTT 59.120 47.619 0.00 0.00 0.00 2.66
3674 4234 2.755836 TGACGAAAGCAGTTTCTTGC 57.244 45.000 0.00 0.00 44.41 4.01
3685 4245 1.761784 AGTTTCTTGCCATTGTTGCCA 59.238 42.857 0.00 0.00 0.00 4.92
3737 4297 5.303971 CATCCTTTAGGCCAGAGTTAGATG 58.696 45.833 5.01 4.68 34.44 2.90
3790 4350 1.751927 CACCAAGAGGCAGCCCATC 60.752 63.158 8.22 0.00 39.06 3.51
3799 4359 0.383231 GGCAGCCCATCTTGAATTCG 59.617 55.000 0.00 0.00 0.00 3.34
3864 4424 4.042062 AGAGGAATTCGATGGGCATATGAA 59.958 41.667 6.97 0.00 0.00 2.57
3883 4443 8.562892 CATATGAAGATGGAATAGTTTCACCAC 58.437 37.037 0.00 0.00 35.19 4.16
3911 4471 7.957002 TCATCTATCAATACTTCTCCAGAACC 58.043 38.462 0.00 0.00 0.00 3.62
3920 4480 3.117888 ACTTCTCCAGAACCACACATTGT 60.118 43.478 0.00 0.00 0.00 2.71
3945 4505 4.760530 TCATTAGCTGCTCAAGGTATGT 57.239 40.909 4.91 0.00 38.63 2.29
3970 4531 4.822036 TTGGTACTTCACAATTTCACGG 57.178 40.909 0.00 0.00 0.00 4.94
3971 4532 2.550606 TGGTACTTCACAATTTCACGGC 59.449 45.455 0.00 0.00 0.00 5.68
3972 4533 2.412325 GGTACTTCACAATTTCACGGCG 60.412 50.000 4.80 4.80 0.00 6.46
3973 4534 1.305201 ACTTCACAATTTCACGGCGT 58.695 45.000 6.77 6.77 0.00 5.68
3974 4535 1.673920 ACTTCACAATTTCACGGCGTT 59.326 42.857 11.19 0.00 0.00 4.84
3975 4536 2.286772 ACTTCACAATTTCACGGCGTTC 60.287 45.455 11.19 0.00 0.00 3.95
3976 4537 0.589223 TCACAATTTCACGGCGTTCC 59.411 50.000 11.19 0.00 0.00 3.62
3989 4550 3.963383 GGCGTTCCGTTCATTTATCAT 57.037 42.857 0.00 0.00 0.00 2.45
3990 4551 3.617669 GGCGTTCCGTTCATTTATCATG 58.382 45.455 0.00 0.00 0.00 3.07
3991 4552 3.064820 GGCGTTCCGTTCATTTATCATGT 59.935 43.478 0.00 0.00 0.00 3.21
3992 4553 4.271533 GGCGTTCCGTTCATTTATCATGTA 59.728 41.667 0.00 0.00 0.00 2.29
3993 4554 5.220700 GGCGTTCCGTTCATTTATCATGTAA 60.221 40.000 0.00 0.00 0.00 2.41
3994 4555 5.675444 GCGTTCCGTTCATTTATCATGTAAC 59.325 40.000 0.00 0.00 0.00 2.50
3995 4556 6.456449 GCGTTCCGTTCATTTATCATGTAACT 60.456 38.462 0.00 0.00 0.00 2.24
3996 4557 7.117454 CGTTCCGTTCATTTATCATGTAACTC 58.883 38.462 0.00 0.00 0.00 3.01
3997 4558 7.010183 CGTTCCGTTCATTTATCATGTAACTCT 59.990 37.037 0.00 0.00 0.00 3.24
3998 4559 9.309516 GTTCCGTTCATTTATCATGTAACTCTA 57.690 33.333 0.00 0.00 0.00 2.43
3999 4560 9.529325 TTCCGTTCATTTATCATGTAACTCTAG 57.471 33.333 0.00 0.00 0.00 2.43
4000 4561 8.692710 TCCGTTCATTTATCATGTAACTCTAGT 58.307 33.333 0.00 0.00 0.00 2.57
4001 4562 9.314321 CCGTTCATTTATCATGTAACTCTAGTT 57.686 33.333 0.39 0.39 41.73 2.24
4007 4568 9.838339 ATTTATCATGTAACTCTAGTTTCAGGG 57.162 33.333 12.20 6.14 38.40 4.45
4008 4569 6.875972 ATCATGTAACTCTAGTTTCAGGGT 57.124 37.500 12.20 4.66 38.40 4.34
4009 4570 6.282199 TCATGTAACTCTAGTTTCAGGGTC 57.718 41.667 12.20 0.00 38.40 4.46
4010 4571 5.778241 TCATGTAACTCTAGTTTCAGGGTCA 59.222 40.000 12.20 0.00 38.40 4.02
4011 4572 6.440647 TCATGTAACTCTAGTTTCAGGGTCAT 59.559 38.462 12.20 0.00 38.40 3.06
4012 4573 6.681729 TGTAACTCTAGTTTCAGGGTCATT 57.318 37.500 0.00 0.00 39.31 2.57
4013 4574 7.074653 TGTAACTCTAGTTTCAGGGTCATTT 57.925 36.000 0.00 0.00 39.31 2.32
4014 4575 7.514721 TGTAACTCTAGTTTCAGGGTCATTTT 58.485 34.615 0.00 0.00 39.31 1.82
4015 4576 7.996644 TGTAACTCTAGTTTCAGGGTCATTTTT 59.003 33.333 0.00 0.00 39.31 1.94
4038 4599 6.452494 TTTTATTTGACGGGTTCAGTTTGA 57.548 33.333 0.00 0.00 34.94 2.69
4039 4600 3.982576 ATTTGACGGGTTCAGTTTGAC 57.017 42.857 0.00 0.00 34.94 3.18
4040 4601 2.404923 TTGACGGGTTCAGTTTGACA 57.595 45.000 0.00 0.00 34.94 3.58
4041 4602 1.948104 TGACGGGTTCAGTTTGACAG 58.052 50.000 0.00 0.00 0.00 3.51
4042 4603 1.208535 TGACGGGTTCAGTTTGACAGT 59.791 47.619 0.00 0.00 0.00 3.55
4043 4604 2.285977 GACGGGTTCAGTTTGACAGTT 58.714 47.619 0.00 0.00 0.00 3.16
4044 4605 3.118702 TGACGGGTTCAGTTTGACAGTTA 60.119 43.478 0.00 0.00 0.00 2.24
4045 4606 4.062991 GACGGGTTCAGTTTGACAGTTAT 58.937 43.478 0.00 0.00 0.00 1.89
4046 4607 3.813166 ACGGGTTCAGTTTGACAGTTATG 59.187 43.478 0.00 0.00 0.00 1.90
4047 4608 3.188460 CGGGTTCAGTTTGACAGTTATGG 59.812 47.826 0.00 0.00 0.00 2.74
4048 4609 4.394729 GGGTTCAGTTTGACAGTTATGGA 58.605 43.478 0.00 0.00 0.00 3.41
4049 4610 4.825085 GGGTTCAGTTTGACAGTTATGGAA 59.175 41.667 0.00 0.00 0.00 3.53
4050 4611 5.476945 GGGTTCAGTTTGACAGTTATGGAAT 59.523 40.000 0.00 0.00 0.00 3.01
4051 4612 6.381801 GGTTCAGTTTGACAGTTATGGAATG 58.618 40.000 0.00 0.00 0.00 2.67
4052 4613 5.627499 TCAGTTTGACAGTTATGGAATGC 57.373 39.130 0.00 0.00 0.00 3.56
4053 4614 5.069318 TCAGTTTGACAGTTATGGAATGCA 58.931 37.500 0.00 0.00 0.00 3.96
4054 4615 5.534278 TCAGTTTGACAGTTATGGAATGCAA 59.466 36.000 0.00 0.00 0.00 4.08
4055 4616 6.040278 TCAGTTTGACAGTTATGGAATGCAAA 59.960 34.615 0.00 0.00 0.00 3.68
4056 4617 6.869913 CAGTTTGACAGTTATGGAATGCAAAT 59.130 34.615 0.00 0.00 0.00 2.32
4057 4618 6.869913 AGTTTGACAGTTATGGAATGCAAATG 59.130 34.615 0.00 0.00 0.00 2.32
4058 4619 4.746729 TGACAGTTATGGAATGCAAATGC 58.253 39.130 0.00 0.00 42.50 3.56
4075 4636 7.586714 GCAAATGCATCTTTTTAGTAAAGCT 57.413 32.000 0.00 0.00 41.59 3.74
4076 4637 8.021955 GCAAATGCATCTTTTTAGTAAAGCTT 57.978 30.769 0.00 0.00 41.59 3.74
4077 4638 9.139174 GCAAATGCATCTTTTTAGTAAAGCTTA 57.861 29.630 0.00 0.00 41.59 3.09
4079 4640 9.639601 AAATGCATCTTTTTAGTAAAGCTTACC 57.360 29.630 0.00 0.00 0.00 2.85
4080 4641 7.753309 TGCATCTTTTTAGTAAAGCTTACCA 57.247 32.000 0.00 0.00 0.00 3.25
4081 4642 8.348285 TGCATCTTTTTAGTAAAGCTTACCAT 57.652 30.769 0.00 0.00 0.00 3.55
4082 4643 8.802267 TGCATCTTTTTAGTAAAGCTTACCATT 58.198 29.630 0.00 0.00 0.00 3.16
4088 4649 9.902196 TTTTTAGTAAAGCTTACCATTAGTTGC 57.098 29.630 0.00 0.00 0.00 4.17
4089 4650 7.619964 TTAGTAAAGCTTACCATTAGTTGCC 57.380 36.000 0.00 0.00 0.00 4.52
4090 4651 4.634443 AGTAAAGCTTACCATTAGTTGCCG 59.366 41.667 0.00 0.00 0.00 5.69
4091 4652 3.343941 AAGCTTACCATTAGTTGCCGA 57.656 42.857 0.00 0.00 0.00 5.54
4092 4653 3.343941 AGCTTACCATTAGTTGCCGAA 57.656 42.857 0.00 0.00 0.00 4.30
4093 4654 3.270877 AGCTTACCATTAGTTGCCGAAG 58.729 45.455 0.00 0.00 0.00 3.79
4094 4655 2.223272 GCTTACCATTAGTTGCCGAAGC 60.223 50.000 0.00 0.00 40.48 3.86
4095 4656 1.647346 TACCATTAGTTGCCGAAGCG 58.353 50.000 0.00 0.00 44.31 4.68
4096 4657 0.036765 ACCATTAGTTGCCGAAGCGA 60.037 50.000 0.00 0.00 44.31 4.93
4097 4658 1.299541 CCATTAGTTGCCGAAGCGAT 58.700 50.000 0.00 0.00 44.31 4.58
4098 4659 1.003545 CCATTAGTTGCCGAAGCGATG 60.004 52.381 0.00 0.00 44.31 3.84
4099 4660 1.933181 CATTAGTTGCCGAAGCGATGA 59.067 47.619 0.00 0.00 44.31 2.92
4100 4661 2.309528 TTAGTTGCCGAAGCGATGAT 57.690 45.000 0.00 0.00 44.31 2.45
4101 4662 1.852942 TAGTTGCCGAAGCGATGATC 58.147 50.000 0.00 0.00 44.31 2.92
4102 4663 0.811616 AGTTGCCGAAGCGATGATCC 60.812 55.000 0.00 0.00 44.31 3.36
4103 4664 1.089481 GTTGCCGAAGCGATGATCCA 61.089 55.000 0.00 0.00 44.31 3.41
4104 4665 0.392327 TTGCCGAAGCGATGATCCAA 60.392 50.000 0.00 0.00 44.31 3.53
4105 4666 0.392327 TGCCGAAGCGATGATCCAAA 60.392 50.000 0.00 0.00 44.31 3.28
4106 4667 0.947244 GCCGAAGCGATGATCCAAAT 59.053 50.000 0.00 0.00 0.00 2.32
4107 4668 1.334419 GCCGAAGCGATGATCCAAATG 60.334 52.381 0.00 0.00 0.00 2.32
4108 4669 2.212652 CCGAAGCGATGATCCAAATGA 58.787 47.619 0.00 0.00 0.00 2.57
4109 4670 2.810274 CCGAAGCGATGATCCAAATGAT 59.190 45.455 0.00 0.00 36.01 2.45
4110 4671 3.996363 CCGAAGCGATGATCCAAATGATA 59.004 43.478 0.00 0.00 32.41 2.15
4111 4672 4.633126 CCGAAGCGATGATCCAAATGATAT 59.367 41.667 0.00 0.00 32.41 1.63
4112 4673 5.812127 CCGAAGCGATGATCCAAATGATATA 59.188 40.000 0.00 0.00 32.41 0.86
4113 4674 6.481313 CCGAAGCGATGATCCAAATGATATAT 59.519 38.462 0.00 0.00 32.41 0.86
4114 4675 7.011763 CCGAAGCGATGATCCAAATGATATATT 59.988 37.037 0.00 0.00 32.41 1.28
4115 4676 8.060679 CGAAGCGATGATCCAAATGATATATTC 58.939 37.037 0.00 0.00 32.41 1.75
4116 4677 9.107177 GAAGCGATGATCCAAATGATATATTCT 57.893 33.333 0.00 0.00 32.41 2.40
4117 4678 9.458727 AAGCGATGATCCAAATGATATATTCTT 57.541 29.630 0.00 0.00 32.41 2.52
4118 4679 9.458727 AGCGATGATCCAAATGATATATTCTTT 57.541 29.630 0.00 0.00 32.41 2.52
4119 4680 9.499585 GCGATGATCCAAATGATATATTCTTTG 57.500 33.333 11.31 11.31 32.41 2.77
4158 4719 8.852671 AAATAAATTATCATCCCTTTGGACCA 57.147 30.769 0.00 0.00 45.58 4.02
4159 4720 8.852671 AATAAATTATCATCCCTTTGGACCAA 57.147 30.769 1.69 1.69 45.58 3.67
4160 4721 6.796785 AAATTATCATCCCTTTGGACCAAG 57.203 37.500 7.07 2.12 45.58 3.61
4161 4722 4.946160 TTATCATCCCTTTGGACCAAGT 57.054 40.909 7.07 0.00 45.58 3.16
4162 4723 3.833559 ATCATCCCTTTGGACCAAGTT 57.166 42.857 7.07 0.00 45.58 2.66
4163 4724 4.946160 ATCATCCCTTTGGACCAAGTTA 57.054 40.909 7.07 0.00 45.58 2.24
4164 4725 4.301072 TCATCCCTTTGGACCAAGTTAG 57.699 45.455 7.07 2.17 45.58 2.34
4165 4726 3.913799 TCATCCCTTTGGACCAAGTTAGA 59.086 43.478 7.07 4.12 45.58 2.10
4166 4727 4.540099 TCATCCCTTTGGACCAAGTTAGAT 59.460 41.667 7.07 6.21 45.58 1.98
4167 4728 4.301072 TCCCTTTGGACCAAGTTAGATG 57.699 45.455 7.07 0.00 35.03 2.90
4168 4729 3.655777 TCCCTTTGGACCAAGTTAGATGT 59.344 43.478 7.07 0.00 35.03 3.06
4169 4730 3.758554 CCCTTTGGACCAAGTTAGATGTG 59.241 47.826 7.07 0.00 0.00 3.21
4170 4731 4.398319 CCTTTGGACCAAGTTAGATGTGT 58.602 43.478 7.07 0.00 0.00 3.72
4171 4732 4.827284 CCTTTGGACCAAGTTAGATGTGTT 59.173 41.667 7.07 0.00 0.00 3.32
4172 4733 5.301805 CCTTTGGACCAAGTTAGATGTGTTT 59.698 40.000 7.07 0.00 0.00 2.83
4173 4734 6.385649 TTTGGACCAAGTTAGATGTGTTTC 57.614 37.500 7.07 0.00 0.00 2.78
4174 4735 4.062293 TGGACCAAGTTAGATGTGTTTCG 58.938 43.478 0.00 0.00 0.00 3.46
4175 4736 4.202274 TGGACCAAGTTAGATGTGTTTCGA 60.202 41.667 0.00 0.00 0.00 3.71
4176 4737 4.935808 GGACCAAGTTAGATGTGTTTCGAT 59.064 41.667 0.00 0.00 0.00 3.59
4177 4738 5.163854 GGACCAAGTTAGATGTGTTTCGATG 60.164 44.000 0.00 0.00 0.00 3.84
4178 4739 4.695455 ACCAAGTTAGATGTGTTTCGATGG 59.305 41.667 0.00 0.00 0.00 3.51
4179 4740 4.094887 CCAAGTTAGATGTGTTTCGATGGG 59.905 45.833 0.00 0.00 0.00 4.00
4180 4741 3.270877 AGTTAGATGTGTTTCGATGGGC 58.729 45.455 0.00 0.00 0.00 5.36
4181 4742 2.325583 TAGATGTGTTTCGATGGGCC 57.674 50.000 0.00 0.00 0.00 5.80
4182 4743 0.394352 AGATGTGTTTCGATGGGCCC 60.394 55.000 17.59 17.59 0.00 5.80
4183 4744 1.714899 GATGTGTTTCGATGGGCCCG 61.715 60.000 19.37 5.22 0.00 6.13
4184 4745 3.810896 GTGTTTCGATGGGCCCGC 61.811 66.667 19.37 11.21 0.00 6.13
4185 4746 4.337177 TGTTTCGATGGGCCCGCA 62.337 61.111 19.37 0.00 0.00 5.69
4186 4747 3.810896 GTTTCGATGGGCCCGCAC 61.811 66.667 19.37 10.02 0.00 5.34
4356 4917 2.571202 TGGAGATAACATGCACACAGGA 59.429 45.455 0.00 0.00 0.00 3.86
4368 9156 2.685017 ACAGGAGCCGATGCCTCA 60.685 61.111 0.00 0.00 38.69 3.86
4390 9178 2.203139 CACGAGGCCACAACACCA 60.203 61.111 5.01 0.00 0.00 4.17
4517 9305 1.224592 GTTGATGCCTCGTCCCCAT 59.775 57.895 0.00 0.00 0.00 4.00
4542 9330 1.944024 CCACAACACCAAAGACGCTAA 59.056 47.619 0.00 0.00 0.00 3.09
4606 9870 6.174049 ACAAGAGAGGTTATGGAAAGCTAAC 58.826 40.000 0.00 0.00 0.00 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 3.928769 CATCGATGGCACCGCGTG 61.929 66.667 17.96 4.73 36.51 5.34
75 76 3.616721 AGTGAACCGTCCTGCGCT 61.617 61.111 9.73 0.00 39.71 5.92
76 77 3.414700 CAGTGAACCGTCCTGCGC 61.415 66.667 0.00 0.00 39.71 6.09
77 78 2.738521 CCAGTGAACCGTCCTGCG 60.739 66.667 0.00 0.00 40.95 5.18
78 79 2.358737 CCCAGTGAACCGTCCTGC 60.359 66.667 0.00 0.00 0.00 4.85
79 80 2.347490 CCCCAGTGAACCGTCCTG 59.653 66.667 0.00 0.00 0.00 3.86
80 81 3.637273 GCCCCAGTGAACCGTCCT 61.637 66.667 0.00 0.00 0.00 3.85
81 82 3.485346 TTGCCCCAGTGAACCGTCC 62.485 63.158 0.00 0.00 0.00 4.79
83 84 2.203294 GTTGCCCCAGTGAACCGT 60.203 61.111 0.00 0.00 0.00 4.83
84 85 2.113139 AGTTGCCCCAGTGAACCG 59.887 61.111 0.00 0.00 0.00 4.44
85 86 1.150536 TCAGTTGCCCCAGTGAACC 59.849 57.895 0.00 0.00 0.00 3.62
90 91 3.953775 CCCGTCAGTTGCCCCAGT 61.954 66.667 0.00 0.00 0.00 4.00
94 95 3.842925 TTGAGCCCGTCAGTTGCCC 62.843 63.158 0.00 0.00 36.21 5.36
232 233 2.887568 GATGCCAGTGACGGAGCG 60.888 66.667 0.00 0.00 0.00 5.03
247 248 5.714863 AGAGAGAGAGAGAGAGAGAGAGAT 58.285 45.833 0.00 0.00 0.00 2.75
253 254 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
258 259 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
259 260 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
260 261 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
261 262 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
262 263 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
263 264 4.892345 TGAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
264 265 4.871822 TGAGAGAGAGAGAGAGAGAGAGA 58.128 47.826 0.00 0.00 0.00 3.10
265 266 5.279406 GGATGAGAGAGAGAGAGAGAGAGAG 60.279 52.000 0.00 0.00 0.00 3.20
266 267 4.590647 GGATGAGAGAGAGAGAGAGAGAGA 59.409 50.000 0.00 0.00 0.00 3.10
267 268 4.560311 CGGATGAGAGAGAGAGAGAGAGAG 60.560 54.167 0.00 0.00 0.00 3.20
268 269 3.321968 CGGATGAGAGAGAGAGAGAGAGA 59.678 52.174 0.00 0.00 0.00 3.10
269 270 3.321968 TCGGATGAGAGAGAGAGAGAGAG 59.678 52.174 0.00 0.00 0.00 3.20
270 271 3.069586 GTCGGATGAGAGAGAGAGAGAGA 59.930 52.174 0.00 0.00 0.00 3.10
271 272 3.393800 GTCGGATGAGAGAGAGAGAGAG 58.606 54.545 0.00 0.00 0.00 3.20
272 273 2.223947 CGTCGGATGAGAGAGAGAGAGA 60.224 54.545 0.00 0.00 0.00 3.10
273 274 2.135139 CGTCGGATGAGAGAGAGAGAG 58.865 57.143 0.00 0.00 0.00 3.20
274 275 1.757699 TCGTCGGATGAGAGAGAGAGA 59.242 52.381 0.00 0.00 0.00 3.10
275 276 1.864711 GTCGTCGGATGAGAGAGAGAG 59.135 57.143 0.00 0.00 0.00 3.20
276 277 1.803252 CGTCGTCGGATGAGAGAGAGA 60.803 57.143 0.00 0.00 0.00 3.10
277 278 0.579630 CGTCGTCGGATGAGAGAGAG 59.420 60.000 0.00 0.00 0.00 3.20
278 279 0.175073 TCGTCGTCGGATGAGAGAGA 59.825 55.000 0.00 0.00 33.29 3.10
279 280 2.679199 TCGTCGTCGGATGAGAGAG 58.321 57.895 0.00 0.00 33.29 3.20
280 281 4.926207 TCGTCGTCGGATGAGAGA 57.074 55.556 0.00 0.94 33.29 3.10
284 285 3.872728 CGGCTCGTCGTCGGATGA 61.873 66.667 1.55 0.00 37.01 2.92
285 286 3.791928 CTCGGCTCGTCGTCGGATG 62.792 68.421 1.55 0.00 42.07 3.51
315 316 0.533755 GATCCATCCCCGAAGCACAG 60.534 60.000 0.00 0.00 0.00 3.66
317 318 0.250081 GAGATCCATCCCCGAAGCAC 60.250 60.000 0.00 0.00 0.00 4.40
325 326 1.048601 TACCTTGCGAGATCCATCCC 58.951 55.000 1.22 0.00 0.00 3.85
330 331 1.067582 CCCGTACCTTGCGAGATCC 59.932 63.158 1.22 0.00 0.00 3.36
331 332 1.591863 GCCCGTACCTTGCGAGATC 60.592 63.158 1.22 0.00 0.00 2.75
332 333 2.499685 GCCCGTACCTTGCGAGAT 59.500 61.111 1.22 0.00 0.00 2.75
333 334 3.766691 GGCCCGTACCTTGCGAGA 61.767 66.667 1.22 0.00 0.00 4.04
337 338 4.171103 ATCCGGCCCGTACCTTGC 62.171 66.667 0.85 0.00 0.00 4.01
369 372 1.004862 AGAAGTAAAAGCAGGAGGCCC 59.995 52.381 0.00 0.00 46.50 5.80
370 373 2.489722 CAAGAAGTAAAAGCAGGAGGCC 59.510 50.000 0.00 0.00 46.50 5.19
371 374 2.095008 GCAAGAAGTAAAAGCAGGAGGC 60.095 50.000 0.00 0.00 45.30 4.70
372 375 3.416156 AGCAAGAAGTAAAAGCAGGAGG 58.584 45.455 0.00 0.00 0.00 4.30
373 376 4.516698 TCAAGCAAGAAGTAAAAGCAGGAG 59.483 41.667 0.00 0.00 0.00 3.69
374 377 4.460263 TCAAGCAAGAAGTAAAAGCAGGA 58.540 39.130 0.00 0.00 0.00 3.86
375 378 4.836125 TCAAGCAAGAAGTAAAAGCAGG 57.164 40.909 0.00 0.00 0.00 4.85
376 379 6.197842 CAGTTTCAAGCAAGAAGTAAAAGCAG 59.802 38.462 0.00 0.00 0.00 4.24
377 380 6.035843 CAGTTTCAAGCAAGAAGTAAAAGCA 58.964 36.000 0.00 0.00 0.00 3.91
378 381 5.460091 CCAGTTTCAAGCAAGAAGTAAAAGC 59.540 40.000 0.00 0.00 0.00 3.51
402 405 5.105554 TGAGAGAAGCCTAGAACTTGATGAC 60.106 44.000 3.05 0.00 0.00 3.06
405 408 5.070313 GGATGAGAGAAGCCTAGAACTTGAT 59.930 44.000 3.05 0.00 0.00 2.57
411 414 4.813809 AGATGGATGAGAGAAGCCTAGAA 58.186 43.478 0.00 0.00 0.00 2.10
435 438 4.538746 AAAGTGGACTAGGCAGAAGTAC 57.461 45.455 0.00 0.00 0.00 2.73
473 476 9.289303 CTCGTTCAAGAAAGAAAAATTTGAAGA 57.711 29.630 0.00 0.10 38.13 2.87
474 477 8.534778 CCTCGTTCAAGAAAGAAAAATTTGAAG 58.465 33.333 0.00 0.00 38.13 3.02
475 478 7.010091 GCCTCGTTCAAGAAAGAAAAATTTGAA 59.990 33.333 0.00 0.00 35.93 2.69
476 479 6.475402 GCCTCGTTCAAGAAAGAAAAATTTGA 59.525 34.615 0.00 0.00 0.00 2.69
477 480 6.476706 AGCCTCGTTCAAGAAAGAAAAATTTG 59.523 34.615 0.00 0.00 0.00 2.32
478 481 6.476706 CAGCCTCGTTCAAGAAAGAAAAATTT 59.523 34.615 0.50 0.00 0.00 1.82
480 483 5.507985 CCAGCCTCGTTCAAGAAAGAAAAAT 60.508 40.000 0.50 0.00 0.00 1.82
481 484 4.202010 CCAGCCTCGTTCAAGAAAGAAAAA 60.202 41.667 0.50 0.00 0.00 1.94
485 538 1.878102 GCCAGCCTCGTTCAAGAAAGA 60.878 52.381 0.00 0.00 0.00 2.52
486 539 0.519077 GCCAGCCTCGTTCAAGAAAG 59.481 55.000 0.00 0.00 0.00 2.62
508 561 6.204301 CACTCTGTCAGGGAAAATAGCATATG 59.796 42.308 6.75 0.00 0.00 1.78
511 564 4.521146 CACTCTGTCAGGGAAAATAGCAT 58.479 43.478 6.75 0.00 0.00 3.79
512 565 3.869912 GCACTCTGTCAGGGAAAATAGCA 60.870 47.826 6.75 0.00 0.00 3.49
513 566 2.680339 GCACTCTGTCAGGGAAAATAGC 59.320 50.000 6.75 0.00 0.00 2.97
515 568 3.368427 CGAGCACTCTGTCAGGGAAAATA 60.368 47.826 6.75 0.00 0.00 1.40
517 570 1.270305 CGAGCACTCTGTCAGGGAAAA 60.270 52.381 6.75 0.00 0.00 2.29
518 571 0.318441 CGAGCACTCTGTCAGGGAAA 59.682 55.000 6.75 0.00 0.00 3.13
521 574 0.534412 AATCGAGCACTCTGTCAGGG 59.466 55.000 0.00 0.00 0.00 4.45
522 575 2.376808 AAATCGAGCACTCTGTCAGG 57.623 50.000 0.00 0.00 0.00 3.86
526 579 3.258372 TCCAGTTAAATCGAGCACTCTGT 59.742 43.478 0.00 0.00 0.00 3.41
528 581 4.537135 TTCCAGTTAAATCGAGCACTCT 57.463 40.909 0.00 0.00 0.00 3.24
533 586 4.023963 GGCCTTATTCCAGTTAAATCGAGC 60.024 45.833 0.00 0.00 0.00 5.03
537 607 5.417580 TGTGTGGCCTTATTCCAGTTAAATC 59.582 40.000 3.32 0.00 33.63 2.17
572 648 8.253810 TGAAGATAATACAGCAGCTGGATATAC 58.746 37.037 26.38 16.30 33.27 1.47
607 683 5.876357 TCACATAAGCCTACTCCAGTTTTT 58.124 37.500 0.00 0.00 0.00 1.94
608 684 5.499004 TCACATAAGCCTACTCCAGTTTT 57.501 39.130 0.00 0.00 0.00 2.43
617 693 9.327628 TCGAGTAGATATATCACATAAGCCTAC 57.672 37.037 15.08 5.42 0.00 3.18
632 708 8.915036 ACTGTTCAGGTTTAATCGAGTAGATAT 58.085 33.333 4.82 0.00 38.98 1.63
642 718 6.147985 GGTTCTCAGACTGTTCAGGTTTAATC 59.852 42.308 1.59 0.00 0.00 1.75
666 742 9.719355 AAGTTACATTGGCCTAAATTTAAAAGG 57.281 29.630 3.32 0.26 0.00 3.11
720 917 2.236395 AGATTAGGTTCGTCCCCAACAG 59.764 50.000 0.00 0.00 36.75 3.16
754 951 1.337118 GTCCCCCATTGTTGCTTCAA 58.663 50.000 0.00 0.00 0.00 2.69
755 952 0.187117 TGTCCCCCATTGTTGCTTCA 59.813 50.000 0.00 0.00 0.00 3.02
756 953 1.337118 TTGTCCCCCATTGTTGCTTC 58.663 50.000 0.00 0.00 0.00 3.86
764 961 3.858638 AGAGATTAGGTTTGTCCCCCATT 59.141 43.478 0.00 0.00 36.75 3.16
766 963 2.929301 AGAGATTAGGTTTGTCCCCCA 58.071 47.619 0.00 0.00 36.75 4.96
767 964 3.778629 TGTAGAGATTAGGTTTGTCCCCC 59.221 47.826 0.00 0.00 36.75 5.40
768 965 5.632034 ATGTAGAGATTAGGTTTGTCCCC 57.368 43.478 0.00 0.00 36.75 4.81
782 979 9.731819 CGCTTTTATGTTTCTACTATGTAGAGA 57.268 33.333 7.38 1.53 0.00 3.10
783 980 8.969267 CCGCTTTTATGTTTCTACTATGTAGAG 58.031 37.037 7.38 0.00 0.00 2.43
784 981 8.472413 ACCGCTTTTATGTTTCTACTATGTAGA 58.528 33.333 3.59 3.59 0.00 2.59
785 982 8.644318 ACCGCTTTTATGTTTCTACTATGTAG 57.356 34.615 0.00 0.00 0.00 2.74
786 983 9.439500 AAACCGCTTTTATGTTTCTACTATGTA 57.561 29.630 0.00 0.00 0.00 2.29
787 984 7.916914 AACCGCTTTTATGTTTCTACTATGT 57.083 32.000 0.00 0.00 0.00 2.29
788 985 8.447833 TGAAACCGCTTTTATGTTTCTACTATG 58.552 33.333 13.50 0.00 45.02 2.23
789 986 8.556213 TGAAACCGCTTTTATGTTTCTACTAT 57.444 30.769 13.50 0.00 45.02 2.12
793 990 5.472137 AGCTGAAACCGCTTTTATGTTTCTA 59.528 36.000 13.50 2.69 45.02 2.10
794 991 4.278419 AGCTGAAACCGCTTTTATGTTTCT 59.722 37.500 13.50 0.00 45.02 2.52
796 993 4.037446 TCAGCTGAAACCGCTTTTATGTTT 59.963 37.500 15.67 0.00 35.07 2.83
797 994 3.568007 TCAGCTGAAACCGCTTTTATGTT 59.432 39.130 15.67 0.00 35.07 2.71
799 996 3.829886 TCAGCTGAAACCGCTTTTATG 57.170 42.857 15.67 0.00 35.07 1.90
801 998 3.818210 TCAATCAGCTGAAACCGCTTTTA 59.182 39.130 22.50 0.00 35.07 1.52
807 1301 2.930040 ACGTATCAATCAGCTGAAACCG 59.070 45.455 22.50 17.94 0.00 4.44
814 1308 6.374333 ACAAAATACCAACGTATCAATCAGCT 59.626 34.615 0.00 0.00 33.90 4.24
817 1311 8.661257 CAGTACAAAATACCAACGTATCAATCA 58.339 33.333 0.00 0.00 33.90 2.57
830 1324 7.413328 GGTCAAATACGTCCAGTACAAAATACC 60.413 40.741 0.00 0.00 38.29 2.73
845 1339 8.097038 AGCATGAGATATATTGGTCAAATACGT 58.903 33.333 0.00 0.00 33.53 3.57
846 1340 8.484641 AGCATGAGATATATTGGTCAAATACG 57.515 34.615 0.00 0.00 33.53 3.06
851 1345 7.658982 GTGAGAAGCATGAGATATATTGGTCAA 59.341 37.037 0.00 0.00 0.00 3.18
866 1360 3.079578 AGGTGACATTGTGAGAAGCATG 58.920 45.455 0.00 0.00 0.00 4.06
896 1390 6.815089 TGTTGAACTGTGCCTATCAAAATTT 58.185 32.000 0.00 0.00 33.93 1.82
898 1392 6.594788 ATGTTGAACTGTGCCTATCAAAAT 57.405 33.333 0.00 0.00 33.93 1.82
928 1422 7.977853 GCTGATAATCCTTCAATTGACAACAAT 59.022 33.333 7.89 0.00 46.99 2.71
934 1428 5.525378 ACGAGCTGATAATCCTTCAATTGAC 59.475 40.000 7.89 0.00 0.00 3.18
948 1442 3.521560 GTGATGGTTTCACGAGCTGATA 58.478 45.455 0.00 0.00 45.00 2.15
960 1454 2.362077 GCAGTGAACAAGGTGATGGTTT 59.638 45.455 0.00 0.00 0.00 3.27
984 1478 3.875727 CAGCCATGTATGAGAGTGAAAGG 59.124 47.826 0.00 0.00 0.00 3.11
995 1489 1.655099 GCGCAAAAACAGCCATGTATG 59.345 47.619 0.30 0.00 39.29 2.39
1010 1504 1.803555 TCACGAAATCAATGAGCGCAA 59.196 42.857 11.47 0.00 0.00 4.85
1014 1508 4.493220 GCACTAGTCACGAAATCAATGAGC 60.493 45.833 0.00 0.00 0.00 4.26
1036 1530 0.028505 CATAAGTGCGATGCCACAGC 59.971 55.000 0.00 0.00 38.18 4.40
1047 1541 5.822519 TGTAATCACAGGATTCCATAAGTGC 59.177 40.000 5.29 0.00 42.66 4.40
1059 1553 8.631480 AGTATATCATACGTGTAATCACAGGA 57.369 34.615 0.00 0.00 44.02 3.86
1164 1658 5.977489 TCCTTTCAGAGTTCATAAGACGA 57.023 39.130 0.00 0.00 0.00 4.20
1179 1673 6.460953 GGTTACATGTTTCTTGCTTCCTTTCA 60.461 38.462 2.30 0.00 0.00 2.69
1238 1732 6.507958 TCTCACTCACTTCACTCTCTATTG 57.492 41.667 0.00 0.00 0.00 1.90
1245 1739 5.292765 TGTTTCATCTCACTCACTTCACTC 58.707 41.667 0.00 0.00 0.00 3.51
1256 1750 2.681848 CTCTGCCCATGTTTCATCTCAC 59.318 50.000 0.00 0.00 0.00 3.51
1278 1772 1.450360 AAGACTGGGCCCTTCTCTTT 58.550 50.000 25.70 7.07 0.00 2.52
1315 1809 1.210931 CCTGCATGCCAGTTTCGTG 59.789 57.895 16.68 0.00 40.06 4.35
1419 1913 4.650972 AGGTACAGTGGGCATTTCTTAA 57.349 40.909 0.00 0.00 0.00 1.85
1420 1914 4.042311 TGAAGGTACAGTGGGCATTTCTTA 59.958 41.667 0.00 0.00 0.00 2.10
1563 2057 8.474025 TCATTTACAACCAAGAAGTGATTGTTT 58.526 29.630 0.00 0.00 35.26 2.83
1580 2074 9.391006 GGTCATAACCATAGTCTTCATTTACAA 57.609 33.333 0.00 0.00 45.68 2.41
1599 2096 7.390440 GCCACAGCATATATAACAAGGTCATAA 59.610 37.037 0.00 0.00 39.53 1.90
1619 2116 0.320771 ACACGCCTTAGAAGCCACAG 60.321 55.000 0.00 0.00 0.00 3.66
1923 2420 7.481275 TTCTTTGAACAATTTCCAAGCATTC 57.519 32.000 0.00 0.00 35.41 2.67
1926 2423 7.678947 TTTTTCTTTGAACAATTTCCAAGCA 57.321 28.000 0.00 0.00 35.41 3.91
1951 2448 8.463930 TCTGAATTAATGGTTTCTTCTGTTGT 57.536 30.769 0.00 0.00 0.00 3.32
2003 2500 2.821969 CCCCCACATTCTTCTTCAACTG 59.178 50.000 0.00 0.00 0.00 3.16
2009 2506 1.928868 CAAGCCCCCACATTCTTCTT 58.071 50.000 0.00 0.00 0.00 2.52
2078 2575 1.180029 AGCAAGTGCCCATTCATGAC 58.820 50.000 0.00 0.00 43.38 3.06
2133 2630 3.037549 GCCAACATTCCCCATATTTGGA 58.962 45.455 3.41 0.00 46.92 3.53
2184 2681 2.645838 TTGATCTGCTTATCCTGCCC 57.354 50.000 0.00 0.00 0.00 5.36
2207 2711 5.687285 CCACAAAGAACAACATAAGAAGCAC 59.313 40.000 0.00 0.00 0.00 4.40
2357 2861 0.591236 CGGTTTCCAACAAGCACACG 60.591 55.000 0.00 0.00 0.00 4.49
2520 3024 5.833131 TCTTTCTGGCTGACCTAAATGTTTT 59.167 36.000 0.00 0.00 36.63 2.43
2581 3085 0.310854 GTTTGGACAGTTCAAGGCCG 59.689 55.000 0.00 0.00 0.00 6.13
2759 3263 4.488126 TCTAATGTGTGTTTGCTTCAGC 57.512 40.909 0.00 0.00 42.50 4.26
2798 3302 8.599055 AGAACTTTAACTTTCTTAGTAACCCG 57.401 34.615 0.00 0.00 35.54 5.28
2924 3428 0.109132 CAAAATCTGCTTCGTGGCCC 60.109 55.000 0.00 0.00 0.00 5.80
2929 3433 2.421424 GCTGGATCAAAATCTGCTTCGT 59.579 45.455 0.00 0.00 32.55 3.85
2991 3495 6.258947 GCTGTTATTCCTAGACTTAAGCAAGG 59.741 42.308 1.29 7.17 35.97 3.61
3113 3632 9.185680 ACAAAAATACTTTCTGTTAAGGTGAGT 57.814 29.630 0.00 0.00 0.00 3.41
3134 3653 7.716799 ATAGCCCATTACATTCAGAACAAAA 57.283 32.000 0.00 0.00 0.00 2.44
3157 3676 6.305272 TGCAGAAGTCCTCTAAATCAGAAT 57.695 37.500 0.00 0.00 31.12 2.40
3194 3720 5.504665 CGAAAGATGGTCTCCATAACATTGC 60.505 44.000 0.99 0.00 45.26 3.56
3333 3887 7.013655 CAGATATGGTAGCTTTAAAATGCAGGT 59.986 37.037 0.00 0.00 0.00 4.00
3440 3996 4.334443 CGAAATGCTTGAATCGGTACTTG 58.666 43.478 0.00 0.00 0.00 3.16
3454 4010 5.391312 AAATTCTTAGTTGCCGAAATGCT 57.609 34.783 0.00 0.00 0.00 3.79
3555 4115 1.003262 CATTCGTGGGCAAGCAAACG 61.003 55.000 11.11 11.11 37.38 3.60
3568 4128 5.240844 CCCAAAAGGTAGTTTCTTCATTCGT 59.759 40.000 0.00 0.00 0.00 3.85
3569 4129 5.699839 CCCAAAAGGTAGTTTCTTCATTCG 58.300 41.667 0.00 0.00 0.00 3.34
3570 4130 5.010617 TGCCCAAAAGGTAGTTTCTTCATTC 59.989 40.000 0.00 0.00 38.26 2.67
3571 4131 4.898861 TGCCCAAAAGGTAGTTTCTTCATT 59.101 37.500 0.00 0.00 38.26 2.57
3613 4173 2.022195 CATGTTTGCTCCCCTCTGATG 58.978 52.381 0.00 0.00 0.00 3.07
3655 4215 1.333619 GGCAAGAAACTGCTTTCGTCA 59.666 47.619 0.00 0.00 40.79 4.35
3737 4297 2.094957 GCGAGGAGGATATCACAGTAGC 60.095 54.545 4.83 0.00 0.00 3.58
3799 4359 5.009710 TGGATAGGATGTGAATCGTACTGAC 59.990 44.000 0.00 0.00 0.00 3.51
3864 4424 7.437713 TGATAGTGGTGAAACTATTCCATCT 57.562 36.000 0.00 0.00 42.22 2.90
3896 4456 5.221925 ACAATGTGTGGTTCTGGAGAAGTAT 60.222 40.000 0.00 0.00 34.27 2.12
3911 4471 4.855388 GCAGCTAATGAAAGACAATGTGTG 59.145 41.667 0.00 0.00 0.00 3.82
3920 4480 4.292186 ACCTTGAGCAGCTAATGAAAGA 57.708 40.909 0.00 0.00 0.00 2.52
3957 4518 0.589223 GGAACGCCGTGAAATTGTGA 59.411 50.000 0.00 0.00 0.00 3.58
3972 4533 8.197988 AGAGTTACATGATAAATGAACGGAAC 57.802 34.615 0.00 0.00 0.00 3.62
3973 4534 9.529325 CTAGAGTTACATGATAAATGAACGGAA 57.471 33.333 0.00 0.00 0.00 4.30
3974 4535 8.692710 ACTAGAGTTACATGATAAATGAACGGA 58.307 33.333 0.00 0.00 0.00 4.69
3975 4536 8.873215 ACTAGAGTTACATGATAAATGAACGG 57.127 34.615 0.00 0.00 0.00 4.44
3981 4542 9.838339 CCCTGAAACTAGAGTTACATGATAAAT 57.162 33.333 0.00 0.00 37.25 1.40
3982 4543 8.822805 ACCCTGAAACTAGAGTTACATGATAAA 58.177 33.333 0.00 0.00 37.25 1.40
3983 4544 8.375493 ACCCTGAAACTAGAGTTACATGATAA 57.625 34.615 0.00 0.00 37.25 1.75
3984 4545 7.618117 TGACCCTGAAACTAGAGTTACATGATA 59.382 37.037 0.00 0.00 37.25 2.15
3985 4546 6.440647 TGACCCTGAAACTAGAGTTACATGAT 59.559 38.462 0.00 0.00 37.25 2.45
3986 4547 5.778241 TGACCCTGAAACTAGAGTTACATGA 59.222 40.000 0.00 0.00 37.25 3.07
3987 4548 6.037786 TGACCCTGAAACTAGAGTTACATG 57.962 41.667 0.00 0.00 37.25 3.21
3988 4549 6.875972 ATGACCCTGAAACTAGAGTTACAT 57.124 37.500 0.00 0.00 37.25 2.29
3989 4550 6.681729 AATGACCCTGAAACTAGAGTTACA 57.318 37.500 0.00 0.00 37.25 2.41
3990 4551 7.981102 AAAATGACCCTGAAACTAGAGTTAC 57.019 36.000 0.00 0.00 37.25 2.50
4014 4575 6.752815 GTCAAACTGAACCCGTCAAATAAAAA 59.247 34.615 0.00 0.00 35.22 1.94
4015 4576 6.127703 TGTCAAACTGAACCCGTCAAATAAAA 60.128 34.615 0.00 0.00 35.22 1.52
4016 4577 5.357314 TGTCAAACTGAACCCGTCAAATAAA 59.643 36.000 0.00 0.00 35.22 1.40
4017 4578 4.882427 TGTCAAACTGAACCCGTCAAATAA 59.118 37.500 0.00 0.00 35.22 1.40
4018 4579 4.452825 TGTCAAACTGAACCCGTCAAATA 58.547 39.130 0.00 0.00 35.22 1.40
4019 4580 3.283751 TGTCAAACTGAACCCGTCAAAT 58.716 40.909 0.00 0.00 35.22 2.32
4020 4581 2.680841 CTGTCAAACTGAACCCGTCAAA 59.319 45.455 0.00 0.00 35.22 2.69
4021 4582 2.285083 CTGTCAAACTGAACCCGTCAA 58.715 47.619 0.00 0.00 35.22 3.18
4022 4583 1.208535 ACTGTCAAACTGAACCCGTCA 59.791 47.619 0.00 0.00 34.17 4.35
4023 4584 1.949465 ACTGTCAAACTGAACCCGTC 58.051 50.000 0.00 0.00 0.00 4.79
4024 4585 2.413310 AACTGTCAAACTGAACCCGT 57.587 45.000 0.00 0.00 0.00 5.28
4025 4586 3.188460 CCATAACTGTCAAACTGAACCCG 59.812 47.826 0.00 0.00 0.00 5.28
4026 4587 4.394729 TCCATAACTGTCAAACTGAACCC 58.605 43.478 0.00 0.00 0.00 4.11
4027 4588 6.381801 CATTCCATAACTGTCAAACTGAACC 58.618 40.000 0.00 0.00 0.00 3.62
4028 4589 5.858581 GCATTCCATAACTGTCAAACTGAAC 59.141 40.000 0.00 0.00 0.00 3.18
4029 4590 5.534278 TGCATTCCATAACTGTCAAACTGAA 59.466 36.000 0.00 0.00 0.00 3.02
4030 4591 5.069318 TGCATTCCATAACTGTCAAACTGA 58.931 37.500 0.00 0.00 0.00 3.41
4031 4592 5.375417 TGCATTCCATAACTGTCAAACTG 57.625 39.130 0.00 0.00 0.00 3.16
4032 4593 6.403866 TTTGCATTCCATAACTGTCAAACT 57.596 33.333 0.00 0.00 0.00 2.66
4033 4594 6.401367 GCATTTGCATTCCATAACTGTCAAAC 60.401 38.462 0.00 0.00 41.59 2.93
4034 4595 5.638657 GCATTTGCATTCCATAACTGTCAAA 59.361 36.000 0.00 0.00 41.59 2.69
4035 4596 5.170021 GCATTTGCATTCCATAACTGTCAA 58.830 37.500 0.00 0.00 41.59 3.18
4036 4597 4.746729 GCATTTGCATTCCATAACTGTCA 58.253 39.130 0.00 0.00 41.59 3.58
4051 4612 7.586714 AGCTTTACTAAAAAGATGCATTTGC 57.413 32.000 0.00 0.00 42.50 3.68
4053 4614 9.639601 GGTAAGCTTTACTAAAAAGATGCATTT 57.360 29.630 3.20 0.00 0.00 2.32
4054 4615 8.802267 TGGTAAGCTTTACTAAAAAGATGCATT 58.198 29.630 3.20 0.00 0.00 3.56
4055 4616 8.348285 TGGTAAGCTTTACTAAAAAGATGCAT 57.652 30.769 3.20 0.00 0.00 3.96
4056 4617 7.753309 TGGTAAGCTTTACTAAAAAGATGCA 57.247 32.000 3.20 0.00 0.00 3.96
4062 4623 9.902196 GCAACTAATGGTAAGCTTTACTAAAAA 57.098 29.630 3.20 0.00 0.00 1.94
4063 4624 8.517056 GGCAACTAATGGTAAGCTTTACTAAAA 58.483 33.333 3.20 0.00 32.17 1.52
4064 4625 7.148373 CGGCAACTAATGGTAAGCTTTACTAAA 60.148 37.037 3.20 0.00 32.17 1.85
4065 4626 6.314400 CGGCAACTAATGGTAAGCTTTACTAA 59.686 38.462 3.20 0.00 32.17 2.24
4066 4627 5.813672 CGGCAACTAATGGTAAGCTTTACTA 59.186 40.000 3.20 0.00 32.17 1.82
4067 4628 4.634443 CGGCAACTAATGGTAAGCTTTACT 59.366 41.667 3.20 0.00 32.17 2.24
4068 4629 4.632688 TCGGCAACTAATGGTAAGCTTTAC 59.367 41.667 3.20 0.68 32.17 2.01
4069 4630 4.834534 TCGGCAACTAATGGTAAGCTTTA 58.165 39.130 3.20 0.00 32.17 1.85
4070 4631 3.681593 TCGGCAACTAATGGTAAGCTTT 58.318 40.909 3.20 0.00 32.17 3.51
4071 4632 3.343941 TCGGCAACTAATGGTAAGCTT 57.656 42.857 3.48 3.48 32.17 3.74
4072 4633 3.270877 CTTCGGCAACTAATGGTAAGCT 58.729 45.455 0.00 0.00 32.17 3.74
4073 4634 2.223272 GCTTCGGCAACTAATGGTAAGC 60.223 50.000 0.00 0.00 41.33 3.09
4074 4635 2.030457 CGCTTCGGCAACTAATGGTAAG 59.970 50.000 0.00 0.00 41.88 2.34
4075 4636 2.004017 CGCTTCGGCAACTAATGGTAA 58.996 47.619 0.00 0.00 41.88 2.85
4076 4637 1.205179 TCGCTTCGGCAACTAATGGTA 59.795 47.619 0.00 0.00 41.88 3.25
4077 4638 0.036765 TCGCTTCGGCAACTAATGGT 60.037 50.000 0.00 0.00 41.88 3.55
4078 4639 1.003545 CATCGCTTCGGCAACTAATGG 60.004 52.381 0.00 0.00 41.88 3.16
4079 4640 1.933181 TCATCGCTTCGGCAACTAATG 59.067 47.619 0.00 0.00 41.88 1.90
4080 4641 2.309528 TCATCGCTTCGGCAACTAAT 57.690 45.000 0.00 0.00 41.88 1.73
4081 4642 2.201732 GATCATCGCTTCGGCAACTAA 58.798 47.619 0.00 0.00 41.88 2.24
4082 4643 1.538204 GGATCATCGCTTCGGCAACTA 60.538 52.381 0.00 0.00 41.88 2.24
4083 4644 0.811616 GGATCATCGCTTCGGCAACT 60.812 55.000 0.00 0.00 41.88 3.16
4084 4645 1.089481 TGGATCATCGCTTCGGCAAC 61.089 55.000 0.00 0.00 41.88 4.17
4085 4646 0.392327 TTGGATCATCGCTTCGGCAA 60.392 50.000 0.00 0.00 41.88 4.52
4086 4647 0.392327 TTTGGATCATCGCTTCGGCA 60.392 50.000 0.00 0.00 41.88 5.69
4087 4648 0.947244 ATTTGGATCATCGCTTCGGC 59.053 50.000 0.00 0.00 37.65 5.54
4088 4649 2.212652 TCATTTGGATCATCGCTTCGG 58.787 47.619 0.00 0.00 0.00 4.30
4089 4650 5.791367 ATATCATTTGGATCATCGCTTCG 57.209 39.130 0.00 0.00 37.44 3.79
4090 4651 9.107177 AGAATATATCATTTGGATCATCGCTTC 57.893 33.333 0.00 0.00 37.44 3.86
4091 4652 9.458727 AAGAATATATCATTTGGATCATCGCTT 57.541 29.630 0.00 0.00 37.44 4.68
4092 4653 9.458727 AAAGAATATATCATTTGGATCATCGCT 57.541 29.630 0.00 0.00 37.44 4.93
4093 4654 9.499585 CAAAGAATATATCATTTGGATCATCGC 57.500 33.333 11.92 0.00 37.44 4.58
4146 4707 3.655777 ACATCTAACTTGGTCCAAAGGGA 59.344 43.478 5.64 2.67 42.29 4.20
4147 4708 3.758554 CACATCTAACTTGGTCCAAAGGG 59.241 47.826 5.64 0.00 0.00 3.95
4148 4709 4.398319 ACACATCTAACTTGGTCCAAAGG 58.602 43.478 5.64 0.00 0.00 3.11
4149 4710 6.391227 AAACACATCTAACTTGGTCCAAAG 57.609 37.500 5.64 0.44 0.00 2.77
4150 4711 5.008217 CGAAACACATCTAACTTGGTCCAAA 59.992 40.000 5.64 0.00 0.00 3.28
4151 4712 4.513692 CGAAACACATCTAACTTGGTCCAA 59.486 41.667 3.76 3.76 0.00 3.53
4152 4713 4.062293 CGAAACACATCTAACTTGGTCCA 58.938 43.478 0.00 0.00 0.00 4.02
4153 4714 4.312443 TCGAAACACATCTAACTTGGTCC 58.688 43.478 0.00 0.00 0.00 4.46
4154 4715 5.163854 CCATCGAAACACATCTAACTTGGTC 60.164 44.000 0.00 0.00 0.00 4.02
4155 4716 4.695455 CCATCGAAACACATCTAACTTGGT 59.305 41.667 0.00 0.00 0.00 3.67
4156 4717 4.094887 CCCATCGAAACACATCTAACTTGG 59.905 45.833 0.00 0.00 0.00 3.61
4157 4718 4.437390 GCCCATCGAAACACATCTAACTTG 60.437 45.833 0.00 0.00 0.00 3.16
4158 4719 3.689649 GCCCATCGAAACACATCTAACTT 59.310 43.478 0.00 0.00 0.00 2.66
4159 4720 3.270877 GCCCATCGAAACACATCTAACT 58.729 45.455 0.00 0.00 0.00 2.24
4160 4721 2.354821 GGCCCATCGAAACACATCTAAC 59.645 50.000 0.00 0.00 0.00 2.34
4161 4722 2.639065 GGCCCATCGAAACACATCTAA 58.361 47.619 0.00 0.00 0.00 2.10
4162 4723 1.134220 GGGCCCATCGAAACACATCTA 60.134 52.381 19.95 0.00 0.00 1.98
4163 4724 0.394352 GGGCCCATCGAAACACATCT 60.394 55.000 19.95 0.00 0.00 2.90
4164 4725 1.714899 CGGGCCCATCGAAACACATC 61.715 60.000 24.92 0.00 0.00 3.06
4165 4726 1.748879 CGGGCCCATCGAAACACAT 60.749 57.895 24.92 0.00 0.00 3.21
4166 4727 2.359354 CGGGCCCATCGAAACACA 60.359 61.111 24.92 0.00 0.00 3.72
4167 4728 3.810896 GCGGGCCCATCGAAACAC 61.811 66.667 24.92 0.00 0.00 3.32
4168 4729 4.337177 TGCGGGCCCATCGAAACA 62.337 61.111 24.92 4.58 0.00 2.83
4169 4730 3.810896 GTGCGGGCCCATCGAAAC 61.811 66.667 24.92 6.16 0.00 2.78
4181 4742 3.499737 GAAGATGCGTGGGTGCGG 61.500 66.667 0.00 0.00 37.81 5.69
4182 4743 2.434884 AGAAGATGCGTGGGTGCG 60.435 61.111 0.00 0.00 37.81 5.34
4183 4744 2.456119 CGAGAAGATGCGTGGGTGC 61.456 63.158 0.00 0.00 0.00 5.01
4184 4745 0.389817 TTCGAGAAGATGCGTGGGTG 60.390 55.000 0.00 0.00 0.00 4.61
4185 4746 0.108615 CTTCGAGAAGATGCGTGGGT 60.109 55.000 7.02 0.00 40.79 4.51
4186 4747 0.108615 ACTTCGAGAAGATGCGTGGG 60.109 55.000 18.54 0.00 40.79 4.61
4187 4748 1.272781 GACTTCGAGAAGATGCGTGG 58.727 55.000 18.54 0.00 40.79 4.94
4188 4749 1.982612 TGACTTCGAGAAGATGCGTG 58.017 50.000 18.54 0.00 40.79 5.34
4189 4750 2.724977 TTGACTTCGAGAAGATGCGT 57.275 45.000 18.54 0.00 40.79 5.24
4190 4751 3.181377 GCTATTGACTTCGAGAAGATGCG 59.819 47.826 18.54 4.25 40.79 4.73
4191 4752 3.492756 GGCTATTGACTTCGAGAAGATGC 59.507 47.826 18.54 11.72 40.79 3.91
4192 4753 3.733224 CGGCTATTGACTTCGAGAAGATG 59.267 47.826 18.54 4.27 40.79 2.90
4193 4754 3.797184 GCGGCTATTGACTTCGAGAAGAT 60.797 47.826 18.54 5.50 40.79 2.40
4356 4917 3.564218 GGGGATGAGGCATCGGCT 61.564 66.667 0.00 0.00 41.35 5.52
4368 9156 2.933287 TTGTGGCCTCGTGGGGAT 60.933 61.111 3.32 0.00 35.12 3.85
4409 9197 1.374125 CGCACGTCTCCATGAACCA 60.374 57.895 0.00 0.00 0.00 3.67
4517 9305 0.257328 TCTTTGGTGTTGTGGCCTCA 59.743 50.000 3.32 2.96 0.00 3.86
4542 9330 1.410153 CTTCAACCTTTGCTTGCTGGT 59.590 47.619 0.00 0.00 0.00 4.00
4606 9870 2.159517 GCCAGAGTAATCGTTTGCTTGG 60.160 50.000 14.89 14.89 33.32 3.61
4620 9884 2.024414 GACTTTGTTGTTGGCCAGAGT 58.976 47.619 5.11 2.79 0.00 3.24
4837 10628 2.048597 CTTGACCACACGCGCCTA 60.049 61.111 5.73 0.00 0.00 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.