Multiple sequence alignment - TraesCS3D01G501700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G501700 chr3D 100.000 3566 0 0 1 3566 590366459 590370024 0.000000e+00 6586.0
1 TraesCS3D01G501700 chr3D 81.041 1345 223 24 1219 2553 590331517 590330195 0.000000e+00 1042.0
2 TraesCS3D01G501700 chr3D 80.324 1357 237 19 1219 2554 590356931 590355584 0.000000e+00 1000.0
3 TraesCS3D01G501700 chr3D 89.189 222 21 3 3345 3564 559080772 559080992 1.260000e-69 274.0
4 TraesCS3D01G501700 chr3D 80.545 257 46 4 2920 3174 588152650 588152904 1.010000e-45 195.0
5 TraesCS3D01G501700 chr3A 90.878 2894 171 43 57 2900 720434571 720437421 0.000000e+00 3795.0
6 TraesCS3D01G501700 chr3A 79.617 1359 240 27 1219 2554 720417105 720415761 0.000000e+00 941.0
7 TraesCS3D01G501700 chr3A 78.959 1345 251 22 1226 2554 720449783 720451111 0.000000e+00 887.0
8 TraesCS3D01G501700 chr3A 80.244 820 138 14 1768 2581 720393371 720392570 2.370000e-166 595.0
9 TraesCS3D01G501700 chr3A 79.872 626 111 11 1879 2501 720252600 720251987 9.080000e-121 444.0
10 TraesCS3D01G501700 chr3A 78.571 630 112 15 1161 1774 720394162 720393540 9.280000e-106 394.0
11 TraesCS3D01G501700 chr3A 81.166 223 40 2 2920 3142 701662803 701662583 1.020000e-40 178.0
12 TraesCS3D01G501700 chr3A 81.250 224 39 3 2920 3142 709444648 709444869 1.020000e-40 178.0
13 TraesCS3D01G501700 chr3A 80.889 225 40 3 2919 3142 671456678 671456456 1.320000e-39 174.0
14 TraesCS3D01G501700 chrUn 88.355 2207 195 28 807 2975 237856407 237858589 0.000000e+00 2595.0
15 TraesCS3D01G501700 chrUn 88.326 2210 196 28 807 2978 297376868 297374683 0.000000e+00 2595.0
16 TraesCS3D01G501700 chrUn 88.326 2210 196 28 807 2978 305638124 305635939 0.000000e+00 2595.0
17 TraesCS3D01G501700 chrUn 80.067 597 73 11 2638 3190 41729544 41728950 5.550000e-108 401.0
18 TraesCS3D01G501700 chrUn 82.374 278 36 9 5 278 41730018 41729750 2.770000e-56 230.0
19 TraesCS3D01G501700 chrUn 92.000 125 10 0 3212 3336 41728970 41728846 3.660000e-40 176.0
20 TraesCS3D01G501700 chr3B 88.355 2207 195 28 807 2975 789333299 789335481 0.000000e+00 2595.0
21 TraesCS3D01G501700 chr3B 88.355 2207 195 28 807 2975 789368716 789370898 0.000000e+00 2595.0
22 TraesCS3D01G501700 chr3B 88.659 1931 160 14 965 2850 789622964 789621048 0.000000e+00 2298.0
23 TraesCS3D01G501700 chr3B 79.861 1440 245 30 1141 2562 789324131 789322719 0.000000e+00 1011.0
24 TraesCS3D01G501700 chr3B 80.067 597 73 11 2638 3190 789483006 789482412 5.550000e-108 401.0
25 TraesCS3D01G501700 chr3B 82.374 278 36 9 5 278 789483480 789483212 2.770000e-56 230.0
26 TraesCS3D01G501700 chr3B 86.792 212 10 7 558 758 789623283 789623079 1.670000e-53 220.0
27 TraesCS3D01G501700 chr3B 92.000 125 10 0 3212 3336 789482432 789482308 3.660000e-40 176.0
28 TraesCS3D01G501700 chr3B 87.200 125 16 0 3212 3336 789612917 789612793 3.710000e-30 143.0
29 TraesCS3D01G501700 chr5D 90.308 227 20 2 3341 3566 491335893 491336118 2.690000e-76 296.0
30 TraesCS3D01G501700 chr1D 89.286 224 18 6 3344 3564 361490426 361490646 3.510000e-70 276.0
31 TraesCS3D01G501700 chr1D 88.789 223 23 2 3345 3566 51980036 51979815 4.540000e-69 272.0
32 TraesCS3D01G501700 chr7D 89.238 223 19 5 3345 3564 632095543 632095763 1.260000e-69 274.0
33 TraesCS3D01G501700 chr7D 88.210 229 25 2 3339 3566 14676161 14675934 4.540000e-69 272.0
34 TraesCS3D01G501700 chr4D 89.238 223 19 5 3345 3564 52095063 52095283 1.260000e-69 274.0
35 TraesCS3D01G501700 chr2B 88.312 231 23 4 3334 3561 784252602 784252831 1.260000e-69 274.0
36 TraesCS3D01G501700 chr2A 86.722 241 27 5 3327 3566 459527103 459527339 2.730000e-66 263.0
37 TraesCS3D01G501700 chr2A 82.589 224 38 1 2919 3142 6506238 6506460 2.810000e-46 196.0
38 TraesCS3D01G501700 chr2A 80.591 237 44 1 2920 3156 83039740 83039974 7.860000e-42 182.0
39 TraesCS3D01G501700 chr2A 80.717 223 42 1 2920 3142 21224211 21224432 4.730000e-39 172.0
40 TraesCS3D01G501700 chr6D 81.614 223 40 1 2920 3142 428995013 428995234 2.190000e-42 183.0
41 TraesCS3D01G501700 chr4A 81.166 223 41 1 2920 3142 616087769 616087548 1.020000e-40 178.0
42 TraesCS3D01G501700 chr7B 98.039 51 1 0 3283 3333 614514691 614514741 4.900000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G501700 chr3D 590366459 590370024 3565 False 6586.0 6586 100.000000 1 3566 1 chr3D.!!$F3 3565
1 TraesCS3D01G501700 chr3D 590330195 590331517 1322 True 1042.0 1042 81.041000 1219 2553 1 chr3D.!!$R1 1334
2 TraesCS3D01G501700 chr3D 590355584 590356931 1347 True 1000.0 1000 80.324000 1219 2554 1 chr3D.!!$R2 1335
3 TraesCS3D01G501700 chr3A 720434571 720437421 2850 False 3795.0 3795 90.878000 57 2900 1 chr3A.!!$F2 2843
4 TraesCS3D01G501700 chr3A 720415761 720417105 1344 True 941.0 941 79.617000 1219 2554 1 chr3A.!!$R4 1335
5 TraesCS3D01G501700 chr3A 720449783 720451111 1328 False 887.0 887 78.959000 1226 2554 1 chr3A.!!$F3 1328
6 TraesCS3D01G501700 chr3A 720392570 720394162 1592 True 494.5 595 79.407500 1161 2581 2 chr3A.!!$R5 1420
7 TraesCS3D01G501700 chr3A 720251987 720252600 613 True 444.0 444 79.872000 1879 2501 1 chr3A.!!$R3 622
8 TraesCS3D01G501700 chrUn 237856407 237858589 2182 False 2595.0 2595 88.355000 807 2975 1 chrUn.!!$F1 2168
9 TraesCS3D01G501700 chrUn 297374683 297376868 2185 True 2595.0 2595 88.326000 807 2978 1 chrUn.!!$R1 2171
10 TraesCS3D01G501700 chrUn 305635939 305638124 2185 True 2595.0 2595 88.326000 807 2978 1 chrUn.!!$R2 2171
11 TraesCS3D01G501700 chrUn 41728846 41730018 1172 True 269.0 401 84.813667 5 3336 3 chrUn.!!$R3 3331
12 TraesCS3D01G501700 chr3B 789333299 789335481 2182 False 2595.0 2595 88.355000 807 2975 1 chr3B.!!$F1 2168
13 TraesCS3D01G501700 chr3B 789368716 789370898 2182 False 2595.0 2595 88.355000 807 2975 1 chr3B.!!$F2 2168
14 TraesCS3D01G501700 chr3B 789621048 789623283 2235 True 1259.0 2298 87.725500 558 2850 2 chr3B.!!$R4 2292
15 TraesCS3D01G501700 chr3B 789322719 789324131 1412 True 1011.0 1011 79.861000 1141 2562 1 chr3B.!!$R1 1421
16 TraesCS3D01G501700 chr3B 789482308 789483480 1172 True 269.0 401 84.813667 5 3336 3 chr3B.!!$R3 3331

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 1.078709 ATTCTCATTGCACGGTGTCG 58.921 50.0 10.24 0.0 43.02 4.35 F
928 986 1.645710 ACTCTGGAACACCACTAGGG 58.354 55.0 0.00 0.0 44.81 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1151 1250 0.179084 GACGCAGGAATCCGAATCCA 60.179 55.0 5.27 0.0 39.55 3.41 R
2911 3252 0.036388 TTGCCATCTTGAGACCCGAC 60.036 55.0 0.00 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.447054 CGCACAGGTCTATCATTCTCATTC 59.553 45.833 0.00 0.00 0.00 2.67
34 35 7.307870 GGTCTATCATTCTCATTCTCATTGCAC 60.308 40.741 0.00 0.00 0.00 4.57
41 42 1.078709 ATTCTCATTGCACGGTGTCG 58.921 50.000 10.24 0.00 43.02 4.35
135 136 7.624134 GCAAACTTATCGAGATTGAACACATCA 60.624 37.037 0.00 0.00 39.71 3.07
140 141 6.600246 ATCGAGATTGAACACATCATTGAG 57.400 37.500 0.00 0.00 38.03 3.02
150 151 3.433274 ACACATCATTGAGTAAGTGCACG 59.567 43.478 12.01 0.00 0.00 5.34
164 165 8.259049 AGTAAGTGCACGTATAGATCTCTATC 57.741 38.462 15.58 0.00 39.66 2.08
206 207 6.156519 CCCAACATTAGTTTTTGTCCTTAGC 58.843 40.000 0.00 0.00 35.28 3.09
226 227 2.766828 GCTTAGAGCTGGTAGGAGGAAA 59.233 50.000 0.00 0.00 38.45 3.13
281 286 3.460103 TGTGGTTGTTAGTTCCGAGTTC 58.540 45.455 0.00 0.00 0.00 3.01
291 296 3.698289 AGTTCCGAGTTCTGAGACCATA 58.302 45.455 0.00 0.00 0.00 2.74
296 301 3.556513 CGAGTTCTGAGACCATATACGC 58.443 50.000 0.00 0.00 0.00 4.42
366 371 5.671742 ATAAATTTGGCAAACTTGTGCAC 57.328 34.783 16.00 10.75 46.81 4.57
430 435 4.025229 TGTTGAGACGTACTGAAAACATGC 60.025 41.667 0.00 0.00 0.00 4.06
792 837 3.636679 CAACTACCTCCTCTCATCTCCA 58.363 50.000 0.00 0.00 0.00 3.86
813 862 2.580867 CGCGCTCTTTCTCCCTCG 60.581 66.667 5.56 0.00 0.00 4.63
865 914 3.503363 CTAGCGCTGCAAGGCACC 61.503 66.667 22.90 0.00 33.79 5.01
921 970 2.152016 GGCTACAAACTCTGGAACACC 58.848 52.381 0.00 0.00 0.00 4.16
922 971 2.486548 GGCTACAAACTCTGGAACACCA 60.487 50.000 0.00 0.00 0.00 4.17
923 972 2.548480 GCTACAAACTCTGGAACACCAC 59.452 50.000 0.00 0.00 0.00 4.16
928 986 1.645710 ACTCTGGAACACCACTAGGG 58.354 55.000 0.00 0.00 44.81 3.53
952 1010 2.425668 GAGACTTGAGAGGGTAGCTCAC 59.574 54.545 0.00 0.00 41.72 3.51
1094 1179 8.668510 AGTAGTTCATCTTAGCATATTGTTGG 57.331 34.615 0.00 0.00 0.00 3.77
1101 1186 8.570488 TCATCTTAGCATATTGTTGGCTAATTG 58.430 33.333 5.86 7.32 45.81 2.32
1108 1193 6.238731 GCATATTGTTGGCTAATTGCACTCTA 60.239 38.462 0.00 0.00 45.15 2.43
1113 1198 7.880160 TGTTGGCTAATTGCACTCTATTTAT 57.120 32.000 0.00 0.00 45.15 1.40
1114 1199 8.292444 TGTTGGCTAATTGCACTCTATTTATT 57.708 30.769 0.00 0.00 45.15 1.40
1115 1200 8.405531 TGTTGGCTAATTGCACTCTATTTATTC 58.594 33.333 0.00 0.00 45.15 1.75
1116 1201 8.405531 GTTGGCTAATTGCACTCTATTTATTCA 58.594 33.333 0.00 0.00 45.15 2.57
1119 1204 7.042051 GGCTAATTGCACTCTATTTATTCACGA 60.042 37.037 0.00 0.00 45.15 4.35
1151 1250 3.244700 GGACTGCATGTAGGCCAATCTAT 60.245 47.826 29.16 0.00 45.76 1.98
1184 1286 1.006805 GCGTCCTGGAGATGGATCG 60.007 63.158 0.00 0.00 35.87 3.69
1197 1299 2.592861 GATCGGCTGGCCCATGAC 60.593 66.667 0.00 0.00 0.00 3.06
1217 1319 1.476471 CCTGGAAGATAAGCTGGCCAG 60.476 57.143 29.34 29.34 43.98 4.85
1237 1339 2.018644 GCCTGAATTCATCCAAGGCGA 61.019 52.381 17.03 0.00 0.00 5.54
1275 1380 2.346803 CGTCCTTGTTCCATCATCGTT 58.653 47.619 0.00 0.00 0.00 3.85
1362 1467 1.140375 CCCGTACAACTACCCTCGC 59.860 63.158 0.00 0.00 0.00 5.03
1407 1512 1.748244 GCCATGGAGCATGACAAGCTA 60.748 52.381 18.40 0.00 43.81 3.32
1422 1527 2.116383 GCTAGCAAGCCTCGACCTA 58.884 57.895 10.63 0.00 43.40 3.08
1789 2091 0.529378 GGACGGTAAGGATCGTGTGT 59.471 55.000 0.00 0.00 44.25 3.72
1932 2237 2.221169 CACTTGAAGCCTGTTGCACTA 58.779 47.619 0.00 0.00 44.83 2.74
1945 2250 1.320344 TGCACTATCCGTCTCGCCTT 61.320 55.000 0.00 0.00 0.00 4.35
2025 2336 1.981256 ACAACTTTGCGGGAGTGAAT 58.019 45.000 0.00 0.00 0.00 2.57
2184 2495 1.373748 GCTGGAGCAACGTAACCGA 60.374 57.895 0.00 0.00 41.59 4.69
2385 2696 2.615493 CCCCAGTTGCAACTATCTTCGT 60.615 50.000 30.67 4.75 37.08 3.85
2401 2712 2.238942 TCGTGAGACATGCAACAAGT 57.761 45.000 0.00 0.00 33.31 3.16
2430 2741 2.361992 TTCCAGAGCTACCCGCGA 60.362 61.111 8.23 0.00 45.59 5.87
2521 2833 2.285488 GCTATTGGCTTAGTTCTCGCAC 59.715 50.000 0.00 0.00 38.06 5.34
2684 2996 4.058817 GGTAGAGTTATGGAATGCCGAAG 58.941 47.826 0.00 0.00 36.79 3.79
2708 3020 3.067180 GGCCATCACACTTATGGAATGTG 59.933 47.826 0.00 0.00 45.77 3.21
2728 3040 8.970691 AATGTGTTTTTAGTCATGTATTCTGC 57.029 30.769 0.00 0.00 0.00 4.26
2824 3165 4.907269 TGATAAGTTATCTGGGCAGATCCA 59.093 41.667 20.80 0.00 44.37 3.41
2862 3203 0.597568 TTTGCTCTTCATTGGCGTGG 59.402 50.000 0.00 0.00 0.00 4.94
2885 3226 4.754618 GTCATCAGTGTGTATTGGTGTTGA 59.245 41.667 0.00 0.00 0.00 3.18
2893 3234 6.029607 GTGTGTATTGGTGTTGAATGCATAG 58.970 40.000 0.00 0.00 29.72 2.23
2911 3252 5.152097 GCATAGATCGAATTGATGCAAAGG 58.848 41.667 15.81 0.00 41.98 3.11
2918 3259 1.463674 ATTGATGCAAAGGTCGGGTC 58.536 50.000 0.00 0.00 0.00 4.46
2935 3276 0.036388 GTCTCAAGATGGCAACGGGA 60.036 55.000 0.00 0.00 42.51 5.14
2969 3310 0.107459 GTTTTGCTTGCCCAAACCCA 60.107 50.000 6.35 0.00 34.68 4.51
2976 3317 4.376170 GCCCAAACCCATCCCCGT 62.376 66.667 0.00 0.00 0.00 5.28
2981 3322 0.392998 CAAACCCATCCCCGTGAGAG 60.393 60.000 0.00 0.00 0.00 3.20
2992 3333 1.602377 CCCGTGAGAGAAACACAAACC 59.398 52.381 0.00 0.00 38.04 3.27
2996 3337 2.287103 GTGAGAGAAACACAAACCCGTC 59.713 50.000 0.00 0.00 38.05 4.79
2998 3339 1.210967 AGAGAAACACAAACCCGTCCA 59.789 47.619 0.00 0.00 0.00 4.02
3005 3346 1.378762 CAAACCCGTCCACATCCCT 59.621 57.895 0.00 0.00 0.00 4.20
3008 3349 1.838073 AACCCGTCCACATCCCTGTC 61.838 60.000 0.00 0.00 31.62 3.51
3018 3359 2.693871 ATCCCTGTCCCCCATGCAC 61.694 63.158 0.00 0.00 0.00 4.57
3019 3360 4.802051 CCCTGTCCCCCATGCACG 62.802 72.222 0.00 0.00 0.00 5.34
3021 3362 3.716195 CTGTCCCCCATGCACGGA 61.716 66.667 0.00 0.00 0.00 4.69
3048 3389 1.330234 TTTTGCCCGTTCCCTAAACC 58.670 50.000 0.00 0.00 34.11 3.27
3049 3390 0.540133 TTTGCCCGTTCCCTAAACCC 60.540 55.000 0.00 0.00 34.11 4.11
3050 3391 2.437180 GCCCGTTCCCTAAACCCG 60.437 66.667 0.00 0.00 34.11 5.28
3071 3412 0.036765 CGGGTTTTCTGATCCCACGA 60.037 55.000 11.63 0.00 41.12 4.35
3073 3414 1.278127 GGGTTTTCTGATCCCACGAGA 59.722 52.381 0.00 0.00 40.79 4.04
3077 3418 2.762535 TTCTGATCCCACGAGAAACC 57.237 50.000 0.00 0.00 0.00 3.27
3088 3429 1.895020 CGAGAAACCCGTCCCCATGA 61.895 60.000 0.00 0.00 0.00 3.07
3089 3430 0.326927 GAGAAACCCGTCCCCATGAA 59.673 55.000 0.00 0.00 0.00 2.57
3090 3431 0.037734 AGAAACCCGTCCCCATGAAC 59.962 55.000 0.00 0.00 0.00 3.18
3092 3433 0.251165 AAACCCGTCCCCATGAACAG 60.251 55.000 0.00 0.00 0.00 3.16
3093 3434 1.423794 AACCCGTCCCCATGAACAGT 61.424 55.000 0.00 0.00 0.00 3.55
3101 3464 3.572255 GTCCCCATGAACAGTTAGCAAAA 59.428 43.478 0.00 0.00 0.00 2.44
3108 3471 6.019640 CCATGAACAGTTAGCAAAAACAACAG 60.020 38.462 0.00 0.00 0.00 3.16
3114 3477 6.128580 ACAGTTAGCAAAAACAACAGCTTTTG 60.129 34.615 11.05 11.05 42.71 2.44
3115 3478 5.351189 AGTTAGCAAAAACAACAGCTTTTGG 59.649 36.000 16.59 0.00 41.01 3.28
3118 3481 4.392754 AGCAAAAACAACAGCTTTTGGAAG 59.607 37.500 16.59 3.61 41.01 3.46
3124 3487 6.480524 AACAACAGCTTTTGGAAGAAAAAC 57.519 33.333 16.59 0.00 34.71 2.43
3133 3496 6.646240 GCTTTTGGAAGAAAAACATGAGCATA 59.354 34.615 0.00 0.00 34.71 3.14
3139 3502 8.461222 TGGAAGAAAAACATGAGCATATTACAG 58.539 33.333 0.00 0.00 0.00 2.74
3156 3519 0.391130 CAGCAATGGCAGCAGCAAAT 60.391 50.000 2.65 0.00 44.61 2.32
3162 3525 0.742505 TGGCAGCAGCAAATATCAGC 59.257 50.000 2.65 0.00 44.61 4.26
3166 3529 3.562505 GCAGCAGCAAATATCAGCATAC 58.437 45.455 0.00 0.00 41.58 2.39
3167 3530 3.252701 GCAGCAGCAAATATCAGCATACT 59.747 43.478 0.00 0.00 41.58 2.12
3181 3544 3.754965 AGCATACTGAAGCAGAAAACCA 58.245 40.909 0.82 0.00 35.18 3.67
3182 3545 4.338879 AGCATACTGAAGCAGAAAACCAT 58.661 39.130 0.82 0.00 35.18 3.55
3183 3546 4.157289 AGCATACTGAAGCAGAAAACCATG 59.843 41.667 0.82 0.00 35.18 3.66
3184 3547 4.156556 GCATACTGAAGCAGAAAACCATGA 59.843 41.667 0.82 0.00 35.18 3.07
3185 3548 5.675575 GCATACTGAAGCAGAAAACCATGAG 60.676 44.000 0.82 0.00 35.18 2.90
3186 3549 4.090761 ACTGAAGCAGAAAACCATGAGA 57.909 40.909 0.82 0.00 35.18 3.27
3187 3550 4.660168 ACTGAAGCAGAAAACCATGAGAT 58.340 39.130 0.82 0.00 35.18 2.75
3188 3551 5.809001 ACTGAAGCAGAAAACCATGAGATA 58.191 37.500 0.82 0.00 35.18 1.98
3189 3552 6.240894 ACTGAAGCAGAAAACCATGAGATAA 58.759 36.000 0.82 0.00 35.18 1.75
3190 3553 6.373774 ACTGAAGCAGAAAACCATGAGATAAG 59.626 38.462 0.82 0.00 35.18 1.73
3191 3554 6.475504 TGAAGCAGAAAACCATGAGATAAGA 58.524 36.000 0.00 0.00 0.00 2.10
3192 3555 6.596888 TGAAGCAGAAAACCATGAGATAAGAG 59.403 38.462 0.00 0.00 0.00 2.85
3193 3556 4.880696 AGCAGAAAACCATGAGATAAGAGC 59.119 41.667 0.00 0.00 0.00 4.09
3194 3557 4.637534 GCAGAAAACCATGAGATAAGAGCA 59.362 41.667 0.00 0.00 0.00 4.26
3195 3558 5.220815 GCAGAAAACCATGAGATAAGAGCAG 60.221 44.000 0.00 0.00 0.00 4.24
3196 3559 5.879223 CAGAAAACCATGAGATAAGAGCAGT 59.121 40.000 0.00 0.00 0.00 4.40
3197 3560 6.373774 CAGAAAACCATGAGATAAGAGCAGTT 59.626 38.462 0.00 0.00 0.00 3.16
3198 3561 6.944862 AGAAAACCATGAGATAAGAGCAGTTT 59.055 34.615 0.00 0.00 0.00 2.66
3199 3562 7.449704 AGAAAACCATGAGATAAGAGCAGTTTT 59.550 33.333 0.00 0.00 37.54 2.43
3200 3563 8.635765 AAAACCATGAGATAAGAGCAGTTTTA 57.364 30.769 0.00 0.00 34.24 1.52
3201 3564 8.635765 AAACCATGAGATAAGAGCAGTTTTAA 57.364 30.769 0.00 0.00 0.00 1.52
3202 3565 7.617041 ACCATGAGATAAGAGCAGTTTTAAC 57.383 36.000 0.00 0.00 0.00 2.01
3203 3566 7.168219 ACCATGAGATAAGAGCAGTTTTAACA 58.832 34.615 0.00 0.00 0.00 2.41
3204 3567 7.831193 ACCATGAGATAAGAGCAGTTTTAACAT 59.169 33.333 0.00 0.00 0.00 2.71
3205 3568 8.127327 CCATGAGATAAGAGCAGTTTTAACATG 58.873 37.037 0.00 0.00 0.00 3.21
3206 3569 8.886719 CATGAGATAAGAGCAGTTTTAACATGA 58.113 33.333 0.00 0.00 33.30 3.07
3207 3570 8.484641 TGAGATAAGAGCAGTTTTAACATGAG 57.515 34.615 0.00 0.00 0.00 2.90
3208 3571 8.314021 TGAGATAAGAGCAGTTTTAACATGAGA 58.686 33.333 0.00 0.00 0.00 3.27
3209 3572 8.485976 AGATAAGAGCAGTTTTAACATGAGAC 57.514 34.615 0.00 0.00 0.00 3.36
3210 3573 8.097038 AGATAAGAGCAGTTTTAACATGAGACA 58.903 33.333 0.00 0.00 0.00 3.41
3211 3574 6.942532 AAGAGCAGTTTTAACATGAGACAA 57.057 33.333 0.00 0.00 0.00 3.18
3212 3575 6.942532 AGAGCAGTTTTAACATGAGACAAA 57.057 33.333 0.00 0.00 0.00 2.83
3213 3576 6.963796 AGAGCAGTTTTAACATGAGACAAAG 58.036 36.000 0.00 0.00 0.00 2.77
3214 3577 5.523369 AGCAGTTTTAACATGAGACAAAGC 58.477 37.500 0.00 0.00 0.00 3.51
3215 3578 5.067674 AGCAGTTTTAACATGAGACAAAGCA 59.932 36.000 0.00 0.00 0.00 3.91
3221 3584 3.360249 ACATGAGACAAAGCAGCAAAC 57.640 42.857 0.00 0.00 0.00 2.93
3224 3587 1.405105 TGAGACAAAGCAGCAAACCAC 59.595 47.619 0.00 0.00 0.00 4.16
3235 3598 4.572389 AGCAGCAAACCACGAGATAAATAG 59.428 41.667 0.00 0.00 0.00 1.73
3239 3602 6.201044 CAGCAAACCACGAGATAAATAGTAGG 59.799 42.308 0.00 0.00 0.00 3.18
3244 3607 4.227538 CACGAGATAAATAGTAGGCACCG 58.772 47.826 0.00 0.00 0.00 4.94
3246 3609 4.023365 ACGAGATAAATAGTAGGCACCGTC 60.023 45.833 0.00 0.00 0.00 4.79
3247 3610 4.023450 CGAGATAAATAGTAGGCACCGTCA 60.023 45.833 0.00 0.00 0.00 4.35
3263 3626 5.398169 CACCGTCAAATAGCATTTTAGCAA 58.602 37.500 0.00 0.00 36.85 3.91
3271 3634 8.710551 TCAAATAGCATTTTAGCAACAAACATG 58.289 29.630 0.00 0.00 36.85 3.21
3314 3677 7.578310 ACTTGAGCATATTTCAGCACAATAT 57.422 32.000 0.00 0.00 39.80 1.28
3349 3712 8.662781 TTTCAGCAACATCTATTACATACTCC 57.337 34.615 0.00 0.00 0.00 3.85
3350 3713 6.759272 TCAGCAACATCTATTACATACTCCC 58.241 40.000 0.00 0.00 0.00 4.30
3351 3714 6.554982 TCAGCAACATCTATTACATACTCCCT 59.445 38.462 0.00 0.00 0.00 4.20
3352 3715 6.870965 CAGCAACATCTATTACATACTCCCTC 59.129 42.308 0.00 0.00 0.00 4.30
3353 3716 6.014156 AGCAACATCTATTACATACTCCCTCC 60.014 42.308 0.00 0.00 0.00 4.30
3354 3717 6.239600 GCAACATCTATTACATACTCCCTCCA 60.240 42.308 0.00 0.00 0.00 3.86
3355 3718 7.527868 GCAACATCTATTACATACTCCCTCCAT 60.528 40.741 0.00 0.00 0.00 3.41
3356 3719 8.378565 CAACATCTATTACATACTCCCTCCATT 58.621 37.037 0.00 0.00 0.00 3.16
3357 3720 8.140112 ACATCTATTACATACTCCCTCCATTC 57.860 38.462 0.00 0.00 0.00 2.67
3358 3721 7.181125 ACATCTATTACATACTCCCTCCATTCC 59.819 40.741 0.00 0.00 0.00 3.01
3359 3722 6.023603 TCTATTACATACTCCCTCCATTCCC 58.976 44.000 0.00 0.00 0.00 3.97
3360 3723 2.897823 ACATACTCCCTCCATTCCCT 57.102 50.000 0.00 0.00 0.00 4.20
3361 3724 3.151542 ACATACTCCCTCCATTCCCTT 57.848 47.619 0.00 0.00 0.00 3.95
3362 3725 4.295905 ACATACTCCCTCCATTCCCTTA 57.704 45.455 0.00 0.00 0.00 2.69
3363 3726 4.844348 ACATACTCCCTCCATTCCCTTAT 58.156 43.478 0.00 0.00 0.00 1.73
3364 3727 5.989717 ACATACTCCCTCCATTCCCTTATA 58.010 41.667 0.00 0.00 0.00 0.98
3365 3728 6.584950 ACATACTCCCTCCATTCCCTTATAT 58.415 40.000 0.00 0.00 0.00 0.86
3366 3729 7.729350 ACATACTCCCTCCATTCCCTTATATA 58.271 38.462 0.00 0.00 0.00 0.86
3367 3730 8.191110 ACATACTCCCTCCATTCCCTTATATAA 58.809 37.037 0.00 0.00 0.00 0.98
3368 3731 8.709308 CATACTCCCTCCATTCCCTTATATAAG 58.291 40.741 14.56 14.56 0.00 1.73
3384 3747 9.520515 CCTTATATAAGGCCACAAACTCATATT 57.479 33.333 25.12 0.00 45.56 1.28
3388 3751 7.807977 ATAAGGCCACAAACTCATATTACAG 57.192 36.000 5.01 0.00 0.00 2.74
3389 3752 4.526970 AGGCCACAAACTCATATTACAGG 58.473 43.478 5.01 0.00 0.00 4.00
3390 3753 4.018415 AGGCCACAAACTCATATTACAGGT 60.018 41.667 5.01 0.00 0.00 4.00
3391 3754 5.190925 AGGCCACAAACTCATATTACAGGTA 59.809 40.000 5.01 0.00 0.00 3.08
3392 3755 5.296035 GGCCACAAACTCATATTACAGGTAC 59.704 44.000 0.00 0.00 0.00 3.34
3393 3756 5.296035 GCCACAAACTCATATTACAGGTACC 59.704 44.000 2.73 2.73 0.00 3.34
3394 3757 6.411376 CCACAAACTCATATTACAGGTACCA 58.589 40.000 15.94 0.00 0.00 3.25
3395 3758 6.882140 CCACAAACTCATATTACAGGTACCAA 59.118 38.462 15.94 0.00 0.00 3.67
3396 3759 7.065803 CCACAAACTCATATTACAGGTACCAAG 59.934 40.741 15.94 8.83 0.00 3.61
3397 3760 7.065803 CACAAACTCATATTACAGGTACCAAGG 59.934 40.741 15.94 5.66 0.00 3.61
3398 3761 6.886178 AACTCATATTACAGGTACCAAGGT 57.114 37.500 15.94 11.64 0.00 3.50
3399 3762 7.983166 AACTCATATTACAGGTACCAAGGTA 57.017 36.000 15.94 10.60 0.00 3.08
3400 3763 7.983166 ACTCATATTACAGGTACCAAGGTAA 57.017 36.000 15.94 18.28 31.86 2.85
3401 3764 8.562949 ACTCATATTACAGGTACCAAGGTAAT 57.437 34.615 26.23 26.23 39.18 1.89
3402 3765 9.664777 ACTCATATTACAGGTACCAAGGTAATA 57.335 33.333 27.74 27.74 40.75 0.98
3411 3774 9.623000 ACAGGTACCAAGGTAATATTTAATGAC 57.377 33.333 15.94 0.00 31.86 3.06
3412 3775 9.847224 CAGGTACCAAGGTAATATTTAATGACT 57.153 33.333 15.94 0.00 31.86 3.41
3413 3776 9.847224 AGGTACCAAGGTAATATTTAATGACTG 57.153 33.333 15.94 0.00 31.86 3.51
3414 3777 8.565416 GGTACCAAGGTAATATTTAATGACTGC 58.435 37.037 7.15 0.00 31.86 4.40
3415 3778 9.338622 GTACCAAGGTAATATTTAATGACTGCT 57.661 33.333 0.00 0.00 31.86 4.24
3416 3779 8.823220 ACCAAGGTAATATTTAATGACTGCTT 57.177 30.769 0.00 0.00 0.00 3.91
3417 3780 9.255029 ACCAAGGTAATATTTAATGACTGCTTT 57.745 29.630 0.00 0.00 0.00 3.51
3418 3781 9.520204 CCAAGGTAATATTTAATGACTGCTTTG 57.480 33.333 0.00 0.00 0.00 2.77
3438 3801 6.836577 TTTGTAAGCCCATTTTTCTTTTCG 57.163 33.333 0.00 0.00 0.00 3.46
3439 3802 5.523438 TGTAAGCCCATTTTTCTTTTCGT 57.477 34.783 0.00 0.00 0.00 3.85
3440 3803 5.908341 TGTAAGCCCATTTTTCTTTTCGTT 58.092 33.333 0.00 0.00 0.00 3.85
3441 3804 7.040473 TGTAAGCCCATTTTTCTTTTCGTTA 57.960 32.000 0.00 0.00 0.00 3.18
3442 3805 7.490000 TGTAAGCCCATTTTTCTTTTCGTTAA 58.510 30.769 0.00 0.00 0.00 2.01
3443 3806 8.145122 TGTAAGCCCATTTTTCTTTTCGTTAAT 58.855 29.630 0.00 0.00 0.00 1.40
3444 3807 7.652300 AAGCCCATTTTTCTTTTCGTTAATC 57.348 32.000 0.00 0.00 0.00 1.75
3445 3808 5.861787 AGCCCATTTTTCTTTTCGTTAATCG 59.138 36.000 0.00 0.00 41.41 3.34
3461 3824 8.619146 TCGTTAATCGAAGTCATTAATACGTT 57.381 30.769 0.00 0.00 45.98 3.99
3462 3825 9.075519 TCGTTAATCGAAGTCATTAATACGTTT 57.924 29.630 0.00 0.00 45.98 3.60
3463 3826 9.128900 CGTTAATCGAAGTCATTAATACGTTTG 57.871 33.333 0.00 0.00 42.86 2.93
3464 3827 8.930982 GTTAATCGAAGTCATTAATACGTTTGC 58.069 33.333 0.00 0.00 30.33 3.68
3465 3828 6.656314 ATCGAAGTCATTAATACGTTTGCA 57.344 33.333 0.00 0.00 0.00 4.08
3466 3829 6.656314 TCGAAGTCATTAATACGTTTGCAT 57.344 33.333 0.00 0.00 0.00 3.96
3467 3830 6.474364 TCGAAGTCATTAATACGTTTGCATG 58.526 36.000 0.00 0.00 0.00 4.06
3468 3831 5.169561 CGAAGTCATTAATACGTTTGCATGC 59.830 40.000 11.82 11.82 0.00 4.06
3469 3832 5.559427 AGTCATTAATACGTTTGCATGCA 57.441 34.783 18.46 18.46 0.00 3.96
3470 3833 6.135290 AGTCATTAATACGTTTGCATGCAT 57.865 33.333 23.37 9.20 0.00 3.96
3471 3834 5.972973 AGTCATTAATACGTTTGCATGCATG 59.027 36.000 23.37 22.70 0.00 4.06
3485 3848 4.118093 CATGCATGCAAGGAAGAAATGA 57.882 40.909 26.68 0.00 0.00 2.57
3486 3849 3.861276 TGCATGCAAGGAAGAAATGAG 57.139 42.857 20.30 0.00 0.00 2.90
3487 3850 3.423749 TGCATGCAAGGAAGAAATGAGA 58.576 40.909 20.30 0.00 0.00 3.27
3488 3851 4.021229 TGCATGCAAGGAAGAAATGAGAT 58.979 39.130 20.30 0.00 0.00 2.75
3489 3852 5.195185 TGCATGCAAGGAAGAAATGAGATA 58.805 37.500 20.30 0.00 0.00 1.98
3490 3853 5.298527 TGCATGCAAGGAAGAAATGAGATAG 59.701 40.000 20.30 0.00 0.00 2.08
3491 3854 5.530171 GCATGCAAGGAAGAAATGAGATAGA 59.470 40.000 14.21 0.00 0.00 1.98
3492 3855 6.039047 GCATGCAAGGAAGAAATGAGATAGAA 59.961 38.462 14.21 0.00 0.00 2.10
3493 3856 7.640852 CATGCAAGGAAGAAATGAGATAGAAG 58.359 38.462 0.00 0.00 0.00 2.85
3494 3857 6.715280 TGCAAGGAAGAAATGAGATAGAAGT 58.285 36.000 0.00 0.00 0.00 3.01
3495 3858 7.851228 TGCAAGGAAGAAATGAGATAGAAGTA 58.149 34.615 0.00 0.00 0.00 2.24
3496 3859 7.984050 TGCAAGGAAGAAATGAGATAGAAGTAG 59.016 37.037 0.00 0.00 0.00 2.57
3497 3860 7.984617 GCAAGGAAGAAATGAGATAGAAGTAGT 59.015 37.037 0.00 0.00 0.00 2.73
3500 3863 9.702253 AGGAAGAAATGAGATAGAAGTAGTACA 57.298 33.333 2.52 0.00 0.00 2.90
3525 3888 5.678132 GTCATTATGACTACATGCATGCA 57.322 39.130 26.53 25.04 43.73 3.96
3526 3889 6.063640 GTCATTATGACTACATGCATGCAA 57.936 37.500 26.68 13.91 43.73 4.08
3527 3890 6.140786 GTCATTATGACTACATGCATGCAAG 58.859 40.000 26.68 23.45 43.73 4.01
3528 3891 5.824097 TCATTATGACTACATGCATGCAAGT 59.176 36.000 29.11 29.11 37.87 3.16
3529 3892 6.991531 TCATTATGACTACATGCATGCAAGTA 59.008 34.615 28.33 28.33 37.87 2.24
3530 3893 7.662669 TCATTATGACTACATGCATGCAAGTAT 59.337 33.333 29.78 20.73 37.87 2.12
3531 3894 7.806409 TTATGACTACATGCATGCAAGTATT 57.194 32.000 29.78 25.52 37.87 1.89
3532 3895 8.900983 TTATGACTACATGCATGCAAGTATTA 57.099 30.769 29.78 20.56 37.87 0.98
3533 3896 7.806409 ATGACTACATGCATGCAAGTATTAA 57.194 32.000 29.78 20.65 35.21 1.40
3534 3897 7.622893 TGACTACATGCATGCAAGTATTAAA 57.377 32.000 29.78 16.50 31.16 1.52
3535 3898 8.049655 TGACTACATGCATGCAAGTATTAAAA 57.950 30.769 29.78 13.57 31.16 1.52
3536 3899 8.518702 TGACTACATGCATGCAAGTATTAAAAA 58.481 29.630 29.78 12.93 31.16 1.94
3537 3900 8.915871 ACTACATGCATGCAAGTATTAAAAAG 57.084 30.769 29.78 21.91 31.16 2.27
3538 3901 8.522830 ACTACATGCATGCAAGTATTAAAAAGT 58.477 29.630 29.78 22.46 31.16 2.66
3539 3902 9.357652 CTACATGCATGCAAGTATTAAAAAGTT 57.642 29.630 29.78 5.59 31.16 2.66
3540 3903 8.020861 ACATGCATGCAAGTATTAAAAAGTTG 57.979 30.769 25.90 15.46 0.00 3.16
3548 3911 8.146885 GCAAGTATTAAAAAGTTGCTAGAACG 57.853 34.615 19.16 0.00 45.60 3.95
3549 3912 8.013378 GCAAGTATTAAAAAGTTGCTAGAACGA 58.987 33.333 19.16 0.00 45.60 3.85
3550 3913 9.530129 CAAGTATTAAAAAGTTGCTAGAACGAG 57.470 33.333 0.00 0.00 0.00 4.18
3551 3914 9.485206 AAGTATTAAAAAGTTGCTAGAACGAGA 57.515 29.630 0.00 0.00 0.00 4.04
3552 3915 9.485206 AGTATTAAAAAGTTGCTAGAACGAGAA 57.515 29.630 0.00 0.00 0.00 2.87
3555 3918 8.831000 TTAAAAAGTTGCTAGAACGAGAAAAC 57.169 30.769 0.00 0.00 0.00 2.43
3556 3919 6.431198 AAAAGTTGCTAGAACGAGAAAACA 57.569 33.333 0.00 0.00 0.00 2.83
3557 3920 6.619801 AAAGTTGCTAGAACGAGAAAACAT 57.380 33.333 0.00 0.00 0.00 2.71
3558 3921 5.847670 AGTTGCTAGAACGAGAAAACATC 57.152 39.130 0.00 0.00 0.00 3.06
3559 3922 5.297547 AGTTGCTAGAACGAGAAAACATCA 58.702 37.500 0.00 0.00 0.00 3.07
3560 3923 5.934625 AGTTGCTAGAACGAGAAAACATCAT 59.065 36.000 0.00 0.00 0.00 2.45
3561 3924 6.428159 AGTTGCTAGAACGAGAAAACATCATT 59.572 34.615 0.00 0.00 0.00 2.57
3562 3925 7.602644 AGTTGCTAGAACGAGAAAACATCATTA 59.397 33.333 0.00 0.00 0.00 1.90
3563 3926 7.899178 TGCTAGAACGAGAAAACATCATTAA 57.101 32.000 0.00 0.00 0.00 1.40
3564 3927 8.492673 TGCTAGAACGAGAAAACATCATTAAT 57.507 30.769 0.00 0.00 0.00 1.40
3565 3928 8.946085 TGCTAGAACGAGAAAACATCATTAATT 58.054 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.482182 AGAATGATAGACCTGTGCGCA 59.518 47.619 5.66 5.66 0.00 6.09
1 2 2.131183 GAGAATGATAGACCTGTGCGC 58.869 52.381 0.00 0.00 0.00 6.09
2 3 3.443099 TGAGAATGATAGACCTGTGCG 57.557 47.619 0.00 0.00 0.00 5.34
3 4 5.609423 AGAATGAGAATGATAGACCTGTGC 58.391 41.667 0.00 0.00 0.00 4.57
25 26 2.476051 GCGACACCGTGCAATGAG 59.524 61.111 0.00 0.00 38.24 2.90
34 35 1.209127 GTCCAATTTGGCGACACCG 59.791 57.895 10.76 0.00 43.94 4.94
41 42 2.289010 CCAAGACTTGGTCCAATTTGGC 60.289 50.000 23.92 8.02 45.93 4.52
135 136 7.229707 AGAGATCTATACGTGCACTTACTCAAT 59.770 37.037 16.19 2.55 0.00 2.57
140 141 8.259049 AGATAGAGATCTATACGTGCACTTAC 57.741 38.462 16.19 0.00 40.85 2.34
164 165 9.832445 AATGTTGGGTAACTCTACATGTATTAG 57.168 33.333 5.91 9.59 37.68 1.73
170 171 8.561738 AAACTAATGTTGGGTAACTCTACATG 57.438 34.615 0.00 0.00 37.68 3.21
206 207 5.422214 TTTTTCCTCCTACCAGCTCTAAG 57.578 43.478 0.00 0.00 0.00 2.18
226 227 9.118300 TGGCTCAAAACAACATAATTCATTTTT 57.882 25.926 0.00 0.00 0.00 1.94
232 233 7.319646 TGGTATGGCTCAAAACAACATAATTC 58.680 34.615 0.00 0.00 0.00 2.17
275 280 3.003378 TGCGTATATGGTCTCAGAACTCG 59.997 47.826 0.00 0.00 0.00 4.18
281 286 1.686587 TGGGTGCGTATATGGTCTCAG 59.313 52.381 0.00 0.00 0.00 3.35
291 296 3.322254 CCTCTCTAAATCTGGGTGCGTAT 59.678 47.826 0.00 0.00 0.00 3.06
296 301 1.141858 GGGCCTCTCTAAATCTGGGTG 59.858 57.143 0.84 0.00 0.00 4.61
430 435 1.017387 GCCAGCGGTTTGGAATAGAG 58.983 55.000 5.08 0.00 40.87 2.43
792 837 1.153549 GGGAGAAAGAGCGCGTGAT 60.154 57.895 8.43 0.00 0.00 3.06
865 914 1.506718 CAGCAAGACCAGCATGCAG 59.493 57.895 21.98 12.49 43.38 4.41
921 970 3.194542 CCTCTCAAGTCTCAACCCTAGTG 59.805 52.174 0.00 0.00 0.00 2.74
922 971 3.436243 CCTCTCAAGTCTCAACCCTAGT 58.564 50.000 0.00 0.00 0.00 2.57
923 972 2.763448 CCCTCTCAAGTCTCAACCCTAG 59.237 54.545 0.00 0.00 0.00 3.02
928 986 2.829120 AGCTACCCTCTCAAGTCTCAAC 59.171 50.000 0.00 0.00 0.00 3.18
952 1010 2.496817 GCCTAGCACTCGTGGAGG 59.503 66.667 0.00 0.00 33.35 4.30
1073 1155 6.382869 AGCCAACAATATGCTAAGATGAAC 57.617 37.500 0.00 0.00 32.56 3.18
1081 1163 5.593909 AGTGCAATTAGCCAACAATATGCTA 59.406 36.000 0.00 0.00 44.83 3.49
1084 1166 6.140303 AGAGTGCAATTAGCCAACAATATG 57.860 37.500 0.00 0.00 44.83 1.78
1089 1174 7.880160 ATAAATAGAGTGCAATTAGCCAACA 57.120 32.000 0.00 0.00 44.83 3.33
1094 1179 7.794349 GTCGTGAATAAATAGAGTGCAATTAGC 59.206 37.037 0.00 0.00 45.96 3.09
1101 1186 6.129326 CGATCAGTCGTGAATAAATAGAGTGC 60.129 42.308 0.00 0.00 42.78 4.40
1119 1204 1.483827 ACATGCAGTCCATCGATCAGT 59.516 47.619 0.00 0.00 29.71 3.41
1135 1220 4.633126 CGAATCCATAGATTGGCCTACATG 59.367 45.833 3.32 1.29 46.01 3.21
1151 1250 0.179084 GACGCAGGAATCCGAATCCA 60.179 55.000 5.27 0.00 39.55 3.41
1184 1286 4.828296 CCAGGTCATGGGCCAGCC 62.828 72.222 13.78 14.21 46.36 4.85
1197 1299 0.548031 TGGCCAGCTTATCTTCCAGG 59.452 55.000 0.00 0.00 0.00 4.45
1217 1319 0.383231 CGCCTTGGATGAATTCAGGC 59.617 55.000 20.39 20.39 37.58 4.85
1224 1326 1.533625 CAACCTTCGCCTTGGATGAA 58.466 50.000 0.00 0.00 0.00 2.57
1237 1339 2.280592 GTGACCGTCGCCAACCTT 60.281 61.111 0.19 0.00 0.00 3.50
1362 1467 4.120755 GGGCTTCTGCTCTGGGGG 62.121 72.222 0.00 0.00 36.57 5.40
1407 1512 1.893786 CACTAGGTCGAGGCTTGCT 59.106 57.895 0.00 0.00 0.00 3.91
1422 1527 4.314440 TTTGCCGCCGAGAGCACT 62.314 61.111 0.00 0.00 44.04 4.40
1654 1778 2.733593 GTTTGCCGACGAGACGCT 60.734 61.111 0.00 0.00 0.00 5.07
1789 2091 4.814234 GGCATAATCCGAGATGTGTGTAAA 59.186 41.667 0.00 0.00 0.00 2.01
1932 2237 2.754658 ACGGAAGGCGAGACGGAT 60.755 61.111 0.00 0.00 0.00 4.18
2013 2324 1.533625 CCTTGAAATTCACTCCCGCA 58.466 50.000 0.00 0.00 0.00 5.69
2184 2495 2.533435 TGGCTCCCCACTGTCTCT 59.467 61.111 0.00 0.00 35.79 3.10
2385 2696 2.880268 CTCCAACTTGTTGCATGTCTCA 59.120 45.455 7.89 0.00 0.00 3.27
2401 2712 0.321671 CTCTGGAACCGCTTCTCCAA 59.678 55.000 0.00 0.00 41.20 3.53
2430 2741 1.895020 TTAGCCACGCGATCCACCTT 61.895 55.000 15.93 0.00 0.00 3.50
2439 2751 2.528743 CCTCTGCATTAGCCACGCG 61.529 63.158 3.53 3.53 41.13 6.01
2521 2833 5.398603 ACAGAGTAGACAGTTTGGATGAG 57.601 43.478 0.00 0.00 0.00 2.90
2584 2896 3.685272 GGTTTTCAGAGACCGGAAAGATC 59.315 47.826 9.46 0.00 37.66 2.75
2643 2955 7.660208 ACTCTACCGTGATTTTTGTAAAGTCAT 59.340 33.333 1.56 0.00 0.00 3.06
2684 2996 0.550914 TCCATAAGTGTGATGGCCCC 59.449 55.000 0.00 0.00 43.17 5.80
2708 3020 7.059488 CACAACGCAGAATACATGACTAAAAAC 59.941 37.037 0.00 0.00 0.00 2.43
2728 3040 5.177511 AGTGAACATGTCATAACTCACAACG 59.822 40.000 21.90 0.00 38.90 4.10
2824 3165 8.270744 AGAGCAAAGTCATACCTCAAATAGATT 58.729 33.333 0.00 0.00 0.00 2.40
2862 3203 4.754618 TCAACACCAATACACACTGATGAC 59.245 41.667 0.00 0.00 0.00 3.06
2885 3226 5.952526 TGCATCAATTCGATCTATGCATT 57.047 34.783 3.54 0.00 45.76 3.56
2893 3234 3.546815 CCGACCTTTGCATCAATTCGATC 60.547 47.826 6.77 0.00 29.21 3.69
2911 3252 0.036388 TTGCCATCTTGAGACCCGAC 60.036 55.000 0.00 0.00 0.00 4.79
2918 3259 0.804989 GTTCCCGTTGCCATCTTGAG 59.195 55.000 0.00 0.00 0.00 3.02
2935 3276 1.000717 CAAAACCCGGCAGATTTCGTT 60.001 47.619 0.00 0.00 0.00 3.85
2942 3283 2.855514 GCAAGCAAAACCCGGCAGA 61.856 57.895 0.00 0.00 0.00 4.26
2969 3310 1.348064 TGTGTTTCTCTCACGGGGAT 58.652 50.000 0.00 0.00 38.48 3.85
2976 3317 2.557317 GACGGGTTTGTGTTTCTCTCA 58.443 47.619 0.00 0.00 0.00 3.27
2981 3322 1.096416 TGTGGACGGGTTTGTGTTTC 58.904 50.000 0.00 0.00 0.00 2.78
2992 3333 2.584608 GGACAGGGATGTGGACGG 59.415 66.667 0.00 0.00 0.00 4.79
2996 3337 2.008723 ATGGGGGACAGGGATGTGG 61.009 63.158 0.00 0.00 0.00 4.17
2998 3339 2.693871 GCATGGGGGACAGGGATGT 61.694 63.158 0.00 0.00 0.00 3.06
3005 3346 3.716195 CTCCGTGCATGGGGGACA 61.716 66.667 24.78 4.04 37.78 4.02
3018 3359 2.259511 GGCAAAAAGCTGGCTCCG 59.740 61.111 0.00 0.00 44.79 4.63
3019 3360 2.659016 GGGCAAAAAGCTGGCTCC 59.341 61.111 0.00 0.00 44.79 4.70
3021 3362 2.087462 GAACGGGCAAAAAGCTGGCT 62.087 55.000 0.00 0.00 44.79 4.75
3048 3389 0.743345 GGGATCAGAAAACCCGACGG 60.743 60.000 6.99 6.99 34.03 4.79
3049 3390 0.036765 TGGGATCAGAAAACCCGACG 60.037 55.000 0.00 0.00 45.91 5.12
3050 3391 1.450025 GTGGGATCAGAAAACCCGAC 58.550 55.000 0.00 0.00 45.91 4.79
3071 3412 0.037734 GTTCATGGGGACGGGTTTCT 59.962 55.000 0.00 0.00 0.00 2.52
3073 3414 0.251165 CTGTTCATGGGGACGGGTTT 60.251 55.000 0.00 0.00 0.00 3.27
3077 3418 2.012051 GCTAACTGTTCATGGGGACGG 61.012 57.143 0.00 0.00 0.00 4.79
3088 3429 5.072040 AGCTGTTGTTTTTGCTAACTGTT 57.928 34.783 0.00 0.00 33.64 3.16
3089 3430 4.718940 AGCTGTTGTTTTTGCTAACTGT 57.281 36.364 0.00 0.00 33.64 3.55
3090 3431 6.242829 CAAAAGCTGTTGTTTTTGCTAACTG 58.757 36.000 8.60 0.00 43.53 3.16
3092 3433 5.350091 TCCAAAAGCTGTTGTTTTTGCTAAC 59.650 36.000 15.53 0.00 46.16 2.34
3093 3434 5.482908 TCCAAAAGCTGTTGTTTTTGCTAA 58.517 33.333 15.53 0.00 46.16 3.09
3101 3464 5.994668 TGTTTTTCTTCCAAAAGCTGTTGTT 59.005 32.000 15.53 0.00 32.18 2.83
3108 3471 4.810491 TGCTCATGTTTTTCTTCCAAAAGC 59.190 37.500 0.00 0.00 32.18 3.51
3114 3477 7.433425 GCTGTAATATGCTCATGTTTTTCTTCC 59.567 37.037 0.00 0.00 0.00 3.46
3115 3478 7.970061 TGCTGTAATATGCTCATGTTTTTCTTC 59.030 33.333 0.00 0.00 0.00 2.87
3118 3481 8.537223 CATTGCTGTAATATGCTCATGTTTTTC 58.463 33.333 0.00 0.00 0.00 2.29
3124 3487 4.022676 TGCCATTGCTGTAATATGCTCATG 60.023 41.667 11.39 0.00 38.71 3.07
3133 3496 0.458669 GCTGCTGCCATTGCTGTAAT 59.541 50.000 3.85 0.00 38.57 1.89
3139 3502 2.132762 GATATTTGCTGCTGCCATTGC 58.867 47.619 13.47 0.00 38.71 3.56
3162 3525 5.645067 TCTCATGGTTTTCTGCTTCAGTATG 59.355 40.000 0.00 0.00 32.61 2.39
3166 3529 6.596888 TCTTATCTCATGGTTTTCTGCTTCAG 59.403 38.462 0.00 0.00 0.00 3.02
3167 3530 6.475504 TCTTATCTCATGGTTTTCTGCTTCA 58.524 36.000 0.00 0.00 0.00 3.02
3174 3537 6.749923 AACTGCTCTTATCTCATGGTTTTC 57.250 37.500 0.00 0.00 0.00 2.29
3175 3538 7.530426 AAAACTGCTCTTATCTCATGGTTTT 57.470 32.000 0.00 0.00 32.12 2.43
3176 3539 8.515414 GTTAAAACTGCTCTTATCTCATGGTTT 58.485 33.333 0.00 0.00 0.00 3.27
3177 3540 7.665559 TGTTAAAACTGCTCTTATCTCATGGTT 59.334 33.333 0.00 0.00 0.00 3.67
3178 3541 7.168219 TGTTAAAACTGCTCTTATCTCATGGT 58.832 34.615 0.00 0.00 0.00 3.55
3179 3542 7.615582 TGTTAAAACTGCTCTTATCTCATGG 57.384 36.000 0.00 0.00 0.00 3.66
3180 3543 8.886719 TCATGTTAAAACTGCTCTTATCTCATG 58.113 33.333 0.00 0.00 0.00 3.07
3181 3544 9.107177 CTCATGTTAAAACTGCTCTTATCTCAT 57.893 33.333 0.00 0.00 0.00 2.90
3182 3545 8.314021 TCTCATGTTAAAACTGCTCTTATCTCA 58.686 33.333 0.00 0.00 0.00 3.27
3183 3546 8.599774 GTCTCATGTTAAAACTGCTCTTATCTC 58.400 37.037 0.00 0.00 0.00 2.75
3184 3547 8.097038 TGTCTCATGTTAAAACTGCTCTTATCT 58.903 33.333 0.00 0.00 0.00 1.98
3185 3548 8.256611 TGTCTCATGTTAAAACTGCTCTTATC 57.743 34.615 0.00 0.00 0.00 1.75
3186 3549 8.621532 TTGTCTCATGTTAAAACTGCTCTTAT 57.378 30.769 0.00 0.00 0.00 1.73
3187 3550 8.445275 TTTGTCTCATGTTAAAACTGCTCTTA 57.555 30.769 0.00 0.00 0.00 2.10
3188 3551 6.942532 TTGTCTCATGTTAAAACTGCTCTT 57.057 33.333 0.00 0.00 0.00 2.85
3189 3552 6.514048 GCTTTGTCTCATGTTAAAACTGCTCT 60.514 38.462 0.00 0.00 0.00 4.09
3190 3553 5.626955 GCTTTGTCTCATGTTAAAACTGCTC 59.373 40.000 0.00 0.00 0.00 4.26
3191 3554 5.067674 TGCTTTGTCTCATGTTAAAACTGCT 59.932 36.000 0.00 0.00 0.00 4.24
3192 3555 5.280945 TGCTTTGTCTCATGTTAAAACTGC 58.719 37.500 0.00 0.00 0.00 4.40
3193 3556 5.400485 GCTGCTTTGTCTCATGTTAAAACTG 59.600 40.000 0.00 0.00 0.00 3.16
3194 3557 5.067674 TGCTGCTTTGTCTCATGTTAAAACT 59.932 36.000 0.00 0.00 0.00 2.66
3195 3558 5.280945 TGCTGCTTTGTCTCATGTTAAAAC 58.719 37.500 0.00 0.00 0.00 2.43
3196 3559 5.512753 TGCTGCTTTGTCTCATGTTAAAA 57.487 34.783 0.00 0.00 0.00 1.52
3197 3560 5.512753 TTGCTGCTTTGTCTCATGTTAAA 57.487 34.783 0.00 0.00 0.00 1.52
3198 3561 5.280945 GTTTGCTGCTTTGTCTCATGTTAA 58.719 37.500 0.00 0.00 0.00 2.01
3199 3562 4.261572 GGTTTGCTGCTTTGTCTCATGTTA 60.262 41.667 0.00 0.00 0.00 2.41
3200 3563 3.491447 GGTTTGCTGCTTTGTCTCATGTT 60.491 43.478 0.00 0.00 0.00 2.71
3201 3564 2.035066 GGTTTGCTGCTTTGTCTCATGT 59.965 45.455 0.00 0.00 0.00 3.21
3202 3565 2.034939 TGGTTTGCTGCTTTGTCTCATG 59.965 45.455 0.00 0.00 0.00 3.07
3203 3566 2.035066 GTGGTTTGCTGCTTTGTCTCAT 59.965 45.455 0.00 0.00 0.00 2.90
3204 3567 1.405105 GTGGTTTGCTGCTTTGTCTCA 59.595 47.619 0.00 0.00 0.00 3.27
3205 3568 1.597937 CGTGGTTTGCTGCTTTGTCTC 60.598 52.381 0.00 0.00 0.00 3.36
3206 3569 0.381801 CGTGGTTTGCTGCTTTGTCT 59.618 50.000 0.00 0.00 0.00 3.41
3207 3570 0.380378 TCGTGGTTTGCTGCTTTGTC 59.620 50.000 0.00 0.00 0.00 3.18
3208 3571 0.381801 CTCGTGGTTTGCTGCTTTGT 59.618 50.000 0.00 0.00 0.00 2.83
3209 3572 0.662619 TCTCGTGGTTTGCTGCTTTG 59.337 50.000 0.00 0.00 0.00 2.77
3210 3573 1.609208 ATCTCGTGGTTTGCTGCTTT 58.391 45.000 0.00 0.00 0.00 3.51
3211 3574 2.472695 TATCTCGTGGTTTGCTGCTT 57.527 45.000 0.00 0.00 0.00 3.91
3212 3575 2.472695 TTATCTCGTGGTTTGCTGCT 57.527 45.000 0.00 0.00 0.00 4.24
3213 3576 3.764885 ATTTATCTCGTGGTTTGCTGC 57.235 42.857 0.00 0.00 0.00 5.25
3214 3577 6.201044 CCTACTATTTATCTCGTGGTTTGCTG 59.799 42.308 0.00 0.00 0.00 4.41
3215 3578 6.281405 CCTACTATTTATCTCGTGGTTTGCT 58.719 40.000 0.00 0.00 0.00 3.91
3221 3584 4.557205 GGTGCCTACTATTTATCTCGTGG 58.443 47.826 0.00 0.00 0.00 4.94
3224 3587 4.023450 TGACGGTGCCTACTATTTATCTCG 60.023 45.833 0.00 0.00 0.00 4.04
3235 3598 2.018542 TGCTATTTGACGGTGCCTAC 57.981 50.000 0.00 0.00 0.00 3.18
3239 3602 3.791353 GCTAAAATGCTATTTGACGGTGC 59.209 43.478 0.00 0.00 0.00 5.01
3244 3607 8.071122 TGTTTGTTGCTAAAATGCTATTTGAC 57.929 30.769 0.00 0.00 0.00 3.18
3246 3609 7.958567 CCATGTTTGTTGCTAAAATGCTATTTG 59.041 33.333 0.00 0.00 0.00 2.32
3247 3610 7.661027 ACCATGTTTGTTGCTAAAATGCTATTT 59.339 29.630 0.00 0.00 0.00 1.40
3263 3626 8.574251 TTACTGCTGAATTATACCATGTTTGT 57.426 30.769 0.00 0.00 0.00 2.83
3271 3634 7.910683 GCTCAAGTTTTACTGCTGAATTATACC 59.089 37.037 0.00 0.00 0.00 2.73
3336 3699 6.026186 AGGGAATGGAGGGAGTATGTAATAG 58.974 44.000 0.00 0.00 0.00 1.73
3337 3700 5.989717 AGGGAATGGAGGGAGTATGTAATA 58.010 41.667 0.00 0.00 0.00 0.98
3338 3701 4.844348 AGGGAATGGAGGGAGTATGTAAT 58.156 43.478 0.00 0.00 0.00 1.89
3339 3702 4.295905 AGGGAATGGAGGGAGTATGTAA 57.704 45.455 0.00 0.00 0.00 2.41
3340 3703 4.295905 AAGGGAATGGAGGGAGTATGTA 57.704 45.455 0.00 0.00 0.00 2.29
3341 3704 2.897823 AGGGAATGGAGGGAGTATGT 57.102 50.000 0.00 0.00 0.00 2.29
3342 3705 8.624019 TTATATAAGGGAATGGAGGGAGTATG 57.376 38.462 0.00 0.00 0.00 2.39
3343 3706 8.862091 CTTATATAAGGGAATGGAGGGAGTAT 57.138 38.462 13.82 0.00 0.00 2.12
3362 3725 9.507329 CTGTAATATGAGTTTGTGGCCTTATAT 57.493 33.333 3.32 0.00 0.00 0.86
3363 3726 7.936847 CCTGTAATATGAGTTTGTGGCCTTATA 59.063 37.037 3.32 0.00 0.00 0.98
3364 3727 6.772716 CCTGTAATATGAGTTTGTGGCCTTAT 59.227 38.462 3.32 0.00 0.00 1.73
3365 3728 6.119536 CCTGTAATATGAGTTTGTGGCCTTA 58.880 40.000 3.32 0.00 0.00 2.69
3366 3729 4.949856 CCTGTAATATGAGTTTGTGGCCTT 59.050 41.667 3.32 0.00 0.00 4.35
3367 3730 4.018415 ACCTGTAATATGAGTTTGTGGCCT 60.018 41.667 3.32 0.00 0.00 5.19
3368 3731 4.270008 ACCTGTAATATGAGTTTGTGGCC 58.730 43.478 0.00 0.00 0.00 5.36
3369 3732 5.296035 GGTACCTGTAATATGAGTTTGTGGC 59.704 44.000 4.06 0.00 0.00 5.01
3370 3733 6.411376 TGGTACCTGTAATATGAGTTTGTGG 58.589 40.000 14.36 0.00 0.00 4.17
3371 3734 7.065803 CCTTGGTACCTGTAATATGAGTTTGTG 59.934 40.741 14.36 0.00 0.00 3.33
3372 3735 7.110155 CCTTGGTACCTGTAATATGAGTTTGT 58.890 38.462 14.36 0.00 0.00 2.83
3373 3736 7.110155 ACCTTGGTACCTGTAATATGAGTTTG 58.890 38.462 14.36 0.00 0.00 2.93
3374 3737 7.266905 ACCTTGGTACCTGTAATATGAGTTT 57.733 36.000 14.36 0.00 0.00 2.66
3375 3738 6.886178 ACCTTGGTACCTGTAATATGAGTT 57.114 37.500 14.36 0.00 0.00 3.01
3376 3739 7.983166 TTACCTTGGTACCTGTAATATGAGT 57.017 36.000 14.36 0.27 0.00 3.41
3385 3748 9.623000 GTCATTAAATATTACCTTGGTACCTGT 57.377 33.333 14.36 10.21 0.00 4.00
3386 3749 9.847224 AGTCATTAAATATTACCTTGGTACCTG 57.153 33.333 14.36 5.99 0.00 4.00
3387 3750 9.847224 CAGTCATTAAATATTACCTTGGTACCT 57.153 33.333 14.36 0.00 0.00 3.08
3388 3751 8.565416 GCAGTCATTAAATATTACCTTGGTACC 58.435 37.037 4.43 4.43 0.00 3.34
3389 3752 9.338622 AGCAGTCATTAAATATTACCTTGGTAC 57.661 33.333 0.00 0.00 0.00 3.34
3390 3753 9.914834 AAGCAGTCATTAAATATTACCTTGGTA 57.085 29.630 0.00 0.00 0.00 3.25
3391 3754 8.823220 AAGCAGTCATTAAATATTACCTTGGT 57.177 30.769 0.00 0.00 0.00 3.67
3392 3755 9.520204 CAAAGCAGTCATTAAATATTACCTTGG 57.480 33.333 0.00 0.00 0.00 3.61
3414 3777 6.478673 ACGAAAAGAAAAATGGGCTTACAAAG 59.521 34.615 0.00 0.00 0.00 2.77
3415 3778 6.342111 ACGAAAAGAAAAATGGGCTTACAAA 58.658 32.000 0.00 0.00 0.00 2.83
3416 3779 5.908341 ACGAAAAGAAAAATGGGCTTACAA 58.092 33.333 0.00 0.00 0.00 2.41
3417 3780 5.523438 ACGAAAAGAAAAATGGGCTTACA 57.477 34.783 0.00 0.00 0.00 2.41
3418 3781 7.933728 TTAACGAAAAGAAAAATGGGCTTAC 57.066 32.000 0.00 0.00 0.00 2.34
3419 3782 7.539366 CGATTAACGAAAAGAAAAATGGGCTTA 59.461 33.333 0.00 0.00 45.77 3.09
3420 3783 6.364976 CGATTAACGAAAAGAAAAATGGGCTT 59.635 34.615 0.00 0.00 45.77 4.35
3421 3784 5.861787 CGATTAACGAAAAGAAAAATGGGCT 59.138 36.000 0.00 0.00 45.77 5.19
3422 3785 6.077961 CGATTAACGAAAAGAAAAATGGGC 57.922 37.500 0.00 0.00 45.77 5.36
3437 3800 9.128900 CAAACGTATTAATGACTTCGATTAACG 57.871 33.333 0.00 0.00 44.09 3.18
3438 3801 8.930982 GCAAACGTATTAATGACTTCGATTAAC 58.069 33.333 0.00 0.00 30.08 2.01
3439 3802 8.657729 TGCAAACGTATTAATGACTTCGATTAA 58.342 29.630 0.00 0.00 31.50 1.40
3440 3803 8.187354 TGCAAACGTATTAATGACTTCGATTA 57.813 30.769 0.00 0.00 0.00 1.75
3441 3804 7.067532 TGCAAACGTATTAATGACTTCGATT 57.932 32.000 0.00 0.00 0.00 3.34
3442 3805 6.656314 TGCAAACGTATTAATGACTTCGAT 57.344 33.333 0.00 0.00 0.00 3.59
3443 3806 6.474364 CATGCAAACGTATTAATGACTTCGA 58.526 36.000 0.00 0.00 0.00 3.71
3444 3807 5.169561 GCATGCAAACGTATTAATGACTTCG 59.830 40.000 14.21 0.00 0.00 3.79
3445 3808 6.027131 TGCATGCAAACGTATTAATGACTTC 58.973 36.000 20.30 0.00 0.00 3.01
3446 3809 5.948588 TGCATGCAAACGTATTAATGACTT 58.051 33.333 20.30 0.00 0.00 3.01
3447 3810 5.559427 TGCATGCAAACGTATTAATGACT 57.441 34.783 20.30 0.00 0.00 3.41
3448 3811 6.189041 CATGCATGCAAACGTATTAATGAC 57.811 37.500 26.68 0.00 0.00 3.06
3464 3827 4.112634 CTCATTTCTTCCTTGCATGCATG 58.887 43.478 23.37 23.21 0.00 4.06
3465 3828 4.021229 TCTCATTTCTTCCTTGCATGCAT 58.979 39.130 23.37 0.00 0.00 3.96
3466 3829 3.423749 TCTCATTTCTTCCTTGCATGCA 58.576 40.909 18.46 18.46 0.00 3.96
3467 3830 4.650754 ATCTCATTTCTTCCTTGCATGC 57.349 40.909 11.82 11.82 0.00 4.06
3468 3831 7.282675 ACTTCTATCTCATTTCTTCCTTGCATG 59.717 37.037 0.00 0.00 0.00 4.06
3469 3832 7.344913 ACTTCTATCTCATTTCTTCCTTGCAT 58.655 34.615 0.00 0.00 0.00 3.96
3470 3833 6.715280 ACTTCTATCTCATTTCTTCCTTGCA 58.285 36.000 0.00 0.00 0.00 4.08
3471 3834 7.984617 ACTACTTCTATCTCATTTCTTCCTTGC 59.015 37.037 0.00 0.00 0.00 4.01
3474 3837 9.702253 TGTACTACTTCTATCTCATTTCTTCCT 57.298 33.333 0.00 0.00 0.00 3.36
3503 3866 7.041848 TACTTGCATGCATGTAGTCATAATGAC 60.042 37.037 31.61 11.09 39.70 3.06
3504 3867 5.824097 ACTTGCATGCATGTAGTCATAATGA 59.176 36.000 31.27 7.97 33.13 2.57
3505 3868 6.068473 ACTTGCATGCATGTAGTCATAATG 57.932 37.500 31.27 7.37 33.44 1.90
3506 3869 7.991084 ATACTTGCATGCATGTAGTCATAAT 57.009 32.000 35.26 23.00 39.04 1.28
3507 3870 7.806409 AATACTTGCATGCATGTAGTCATAA 57.194 32.000 35.26 22.09 39.04 1.90
3508 3871 8.900983 TTAATACTTGCATGCATGTAGTCATA 57.099 30.769 35.19 25.50 39.04 2.15
3509 3872 7.806409 TTAATACTTGCATGCATGTAGTCAT 57.194 32.000 35.19 26.22 39.04 3.06
3510 3873 7.622893 TTTAATACTTGCATGCATGTAGTCA 57.377 32.000 35.19 26.95 39.04 3.41
3511 3874 8.909708 TTTTTAATACTTGCATGCATGTAGTC 57.090 30.769 35.19 14.96 39.04 2.59
3512 3875 8.522830 ACTTTTTAATACTTGCATGCATGTAGT 58.477 29.630 35.26 34.72 39.04 2.73
3513 3876 8.915871 ACTTTTTAATACTTGCATGCATGTAG 57.084 30.769 35.26 27.77 39.04 2.74
3514 3877 9.138062 CAACTTTTTAATACTTGCATGCATGTA 57.862 29.630 34.92 34.92 39.65 2.29
3515 3878 7.360269 GCAACTTTTTAATACTTGCATGCATGT 60.360 33.333 33.40 33.40 37.70 3.21
3516 3879 6.957077 GCAACTTTTTAATACTTGCATGCATG 59.043 34.615 26.93 26.93 37.70 4.06
3517 3880 6.875195 AGCAACTTTTTAATACTTGCATGCAT 59.125 30.769 23.37 10.46 39.78 3.96
3518 3881 6.222389 AGCAACTTTTTAATACTTGCATGCA 58.778 32.000 18.46 18.46 39.78 3.96
3519 3882 6.710692 AGCAACTTTTTAATACTTGCATGC 57.289 33.333 11.82 11.82 39.78 4.06
3520 3883 9.624697 TTCTAGCAACTTTTTAATACTTGCATG 57.375 29.630 0.00 0.00 39.78 4.06
3521 3884 9.626045 GTTCTAGCAACTTTTTAATACTTGCAT 57.374 29.630 0.00 0.00 39.78 3.96
3522 3885 7.801315 CGTTCTAGCAACTTTTTAATACTTGCA 59.199 33.333 0.00 0.00 39.78 4.08
3523 3886 8.013378 TCGTTCTAGCAACTTTTTAATACTTGC 58.987 33.333 0.00 0.00 37.98 4.01
3524 3887 9.530129 CTCGTTCTAGCAACTTTTTAATACTTG 57.470 33.333 0.00 0.00 0.00 3.16
3525 3888 9.485206 TCTCGTTCTAGCAACTTTTTAATACTT 57.515 29.630 0.00 0.00 0.00 2.24
3526 3889 9.485206 TTCTCGTTCTAGCAACTTTTTAATACT 57.515 29.630 0.00 0.00 0.00 2.12
3529 3892 9.447040 GTTTTCTCGTTCTAGCAACTTTTTAAT 57.553 29.630 0.00 0.00 0.00 1.40
3530 3893 8.452534 TGTTTTCTCGTTCTAGCAACTTTTTAA 58.547 29.630 0.00 0.00 0.00 1.52
3531 3894 7.976826 TGTTTTCTCGTTCTAGCAACTTTTTA 58.023 30.769 0.00 0.00 0.00 1.52
3532 3895 6.848451 TGTTTTCTCGTTCTAGCAACTTTTT 58.152 32.000 0.00 0.00 0.00 1.94
3533 3896 6.431198 TGTTTTCTCGTTCTAGCAACTTTT 57.569 33.333 0.00 0.00 0.00 2.27
3534 3897 6.260050 TGATGTTTTCTCGTTCTAGCAACTTT 59.740 34.615 0.00 0.00 0.00 2.66
3535 3898 5.758296 TGATGTTTTCTCGTTCTAGCAACTT 59.242 36.000 0.00 0.00 0.00 2.66
3536 3899 5.297547 TGATGTTTTCTCGTTCTAGCAACT 58.702 37.500 0.00 0.00 0.00 3.16
3537 3900 5.591643 TGATGTTTTCTCGTTCTAGCAAC 57.408 39.130 0.00 0.00 0.00 4.17
3538 3901 6.801539 AATGATGTTTTCTCGTTCTAGCAA 57.198 33.333 0.00 0.00 0.00 3.91
3539 3902 7.899178 TTAATGATGTTTTCTCGTTCTAGCA 57.101 32.000 0.00 0.00 0.00 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.