Multiple sequence alignment - TraesCS3D01G500900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G500900 chr3D 100.000 4861 0 0 1 4861 590094954 590090094 0.000000e+00 8977.0
1 TraesCS3D01G500900 chr3D 89.196 2601 229 30 2165 4738 590148225 590150800 0.000000e+00 3199.0
2 TraesCS3D01G500900 chr3D 85.329 1261 154 19 3160 4400 590043008 590044257 0.000000e+00 1275.0
3 TraesCS3D01G500900 chr3D 83.938 1295 169 29 3120 4396 590221819 590220546 0.000000e+00 1203.0
4 TraesCS3D01G500900 chr3D 85.612 1112 100 22 971 2028 590137896 590139001 0.000000e+00 1112.0
5 TraesCS3D01G500900 chr3D 78.594 626 97 19 2429 3044 590222594 590221996 3.550000e-101 379.0
6 TraesCS3D01G500900 chr3D 83.514 370 37 15 243 590 513859319 513859686 1.690000e-84 324.0
7 TraesCS3D01G500900 chr3D 90.164 244 23 1 2698 2941 590042119 590042361 2.820000e-82 316.0
8 TraesCS3D01G500900 chr3D 83.198 369 36 17 242 586 355617689 355617323 1.020000e-81 315.0
9 TraesCS3D01G500900 chr3D 86.385 213 23 6 2425 2632 590041883 590042094 1.360000e-55 228.0
10 TraesCS3D01G500900 chr3D 78.868 265 49 6 1448 1710 590306751 590307010 6.470000e-39 172.0
11 TraesCS3D01G500900 chr3B 95.623 2833 119 5 2029 4859 788983999 788986828 0.000000e+00 4540.0
12 TraesCS3D01G500900 chr3B 95.199 2833 117 11 2029 4859 788935817 788938632 0.000000e+00 4460.0
13 TraesCS3D01G500900 chr3B 89.614 2022 144 24 2029 4008 789056209 789058206 0.000000e+00 2510.0
14 TraesCS3D01G500900 chr3B 86.000 1200 106 27 880 2028 789054989 789056177 0.000000e+00 1229.0
15 TraesCS3D01G500900 chr3B 88.998 1018 60 25 885 1860 788932941 788933948 0.000000e+00 1212.0
16 TraesCS3D01G500900 chr3B 83.769 1300 178 23 3108 4392 789183336 789182055 0.000000e+00 1201.0
17 TraesCS3D01G500900 chr3B 85.813 726 51 16 885 1568 788982332 788983047 0.000000e+00 723.0
18 TraesCS3D01G500900 chr3B 92.708 480 15 7 1552 2028 788983505 788983967 0.000000e+00 675.0
19 TraesCS3D01G500900 chr3B 83.356 727 99 14 4031 4738 789058387 789059110 0.000000e+00 652.0
20 TraesCS3D01G500900 chr3B 79.661 531 72 21 2440 2968 789220096 789220592 2.780000e-92 350.0
21 TraesCS3D01G500900 chr3B 92.500 160 4 2 1871 2028 788935632 788935785 6.330000e-54 222.0
22 TraesCS3D01G500900 chr3B 80.682 264 46 4 1448 1710 789176572 789176831 2.970000e-47 200.0
23 TraesCS3D01G500900 chr3B 79.487 273 47 8 1448 1717 789218450 789218716 8.310000e-43 185.0
24 TraesCS3D01G500900 chr3B 94.643 112 6 0 636 747 788932805 788932916 1.800000e-39 174.0
25 TraesCS3D01G500900 chr3B 94.643 112 6 0 636 747 788982196 788982307 1.800000e-39 174.0
26 TraesCS3D01G500900 chr3B 93.162 117 7 1 595 710 788910128 788910012 2.330000e-38 171.0
27 TraesCS3D01G500900 chr3B 89.394 132 10 2 112 241 788966418 788966289 3.890000e-36 163.0
28 TraesCS3D01G500900 chr3B 91.453 117 9 1 595 710 788966285 788966169 5.040000e-35 159.0
29 TraesCS3D01G500900 chr3B 89.600 125 9 2 112 234 788910250 788910128 6.510000e-34 156.0
30 TraesCS3D01G500900 chr3B 91.209 91 7 1 779 868 9287019 9287109 6.610000e-24 122.0
31 TraesCS3D01G500900 chr3B 90.588 85 8 0 160 244 788932688 788932772 3.980000e-21 113.0
32 TraesCS3D01G500900 chr3A 89.120 2500 204 48 2169 4624 719836958 719839433 0.000000e+00 3048.0
33 TraesCS3D01G500900 chr3A 87.553 1181 75 28 867 2004 719835660 719836811 0.000000e+00 1301.0
34 TraesCS3D01G500900 chr3A 84.353 1291 164 28 3120 4392 719939588 719938318 0.000000e+00 1230.0
35 TraesCS3D01G500900 chr3A 84.385 1268 167 23 3155 4400 719778529 719779787 0.000000e+00 1216.0
36 TraesCS3D01G500900 chr3A 78.730 677 102 23 2429 3091 719940365 719939717 9.730000e-112 414.0
37 TraesCS3D01G500900 chr3A 83.438 320 41 5 4085 4392 720231742 720232061 2.210000e-73 287.0
38 TraesCS3D01G500900 chr3A 82.081 346 47 8 4085 4416 720078423 720078767 1.030000e-71 281.0
39 TraesCS3D01G500900 chr3A 80.451 266 43 8 1448 1710 719992321 719992580 1.380000e-45 195.0
40 TraesCS3D01G500900 chr3A 77.459 244 43 10 1448 1686 720215000 720215236 8.490000e-28 135.0
41 TraesCS3D01G500900 chr3A 76.226 265 56 5 1448 1710 720075894 720076153 3.050000e-27 134.0
42 TraesCS3D01G500900 chr3A 87.736 106 9 3 768 869 514095758 514095863 2.380000e-23 121.0
43 TraesCS3D01G500900 chr3A 85.849 106 11 3 16 118 688600206 688600102 5.140000e-20 110.0
44 TraesCS3D01G500900 chr3A 89.412 85 9 0 160 244 719835372 719835456 1.850000e-19 108.0
45 TraesCS3D01G500900 chr4D 90.625 352 26 5 243 591 497903757 497903410 1.230000e-125 460.0
46 TraesCS3D01G500900 chr4D 80.840 381 39 20 241 590 285748480 285748103 8.020000e-68 268.0
47 TraesCS3D01G500900 chrUn 87.329 292 36 1 4569 4859 479425912 479426203 2.800000e-87 333.0
48 TraesCS3D01G500900 chr2A 83.784 370 37 13 243 590 773069821 773070189 3.630000e-86 329.0
49 TraesCS3D01G500900 chr2A 84.783 92 10 4 22 110 648322642 648322552 6.700000e-14 89.8
50 TraesCS3D01G500900 chr2B 83.333 372 38 14 243 590 749824748 749825119 6.070000e-84 322.0
51 TraesCS3D01G500900 chr2B 84.694 98 9 5 17 110 120240973 120241068 5.180000e-15 93.5
52 TraesCS3D01G500900 chr2B 84.536 97 11 3 17 110 198012455 198012360 5.180000e-15 93.5
53 TraesCS3D01G500900 chr2D 81.937 382 35 18 241 590 20687632 20687253 4.760000e-75 292.0
54 TraesCS3D01G500900 chr5B 80.729 384 37 12 239 590 55034991 55034613 1.040000e-66 265.0
55 TraesCS3D01G500900 chr5B 82.569 109 14 4 16 120 565897158 565897265 1.860000e-14 91.6
56 TraesCS3D01G500900 chr7D 82.243 321 23 16 297 590 9163446 9163759 3.760000e-61 246.0
57 TraesCS3D01G500900 chr7D 84.000 100 11 4 15 110 119901632 119901534 1.860000e-14 91.6
58 TraesCS3D01G500900 chr1B 81.818 297 27 17 320 591 667011603 667011309 1.760000e-54 224.0
59 TraesCS3D01G500900 chr1B 83.838 99 11 4 15 109 593561995 593561898 6.700000e-14 89.8
60 TraesCS3D01G500900 chr7A 91.209 91 7 1 779 868 66643494 66643404 6.610000e-24 122.0
61 TraesCS3D01G500900 chr5A 91.111 90 7 1 783 871 567724131 567724042 2.380000e-23 121.0
62 TraesCS3D01G500900 chr5A 90.110 91 8 1 779 868 458337252 458337342 3.070000e-22 117.0
63 TraesCS3D01G500900 chr5A 90.110 91 8 1 779 868 621541247 621541157 3.070000e-22 117.0
64 TraesCS3D01G500900 chr5A 81.553 103 14 5 21 119 494393551 494393450 4.030000e-11 80.5
65 TraesCS3D01G500900 chr6A 89.474 95 9 1 778 871 520842720 520842814 8.550000e-23 119.0
66 TraesCS3D01G500900 chr4A 86.869 99 10 3 783 879 107422482 107422579 1.850000e-19 108.0
67 TraesCS3D01G500900 chr4A 84.000 100 11 4 15 110 642128829 642128927 1.860000e-14 91.6
68 TraesCS3D01G500900 chr1D 87.629 97 7 5 775 868 338068111 338068017 1.850000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G500900 chr3D 590090094 590094954 4860 True 8977.000000 8977 100.000000 1 4861 1 chr3D.!!$R2 4860
1 TraesCS3D01G500900 chr3D 590148225 590150800 2575 False 3199.000000 3199 89.196000 2165 4738 1 chr3D.!!$F3 2573
2 TraesCS3D01G500900 chr3D 590137896 590139001 1105 False 1112.000000 1112 85.612000 971 2028 1 chr3D.!!$F2 1057
3 TraesCS3D01G500900 chr3D 590220546 590222594 2048 True 791.000000 1203 81.266000 2429 4396 2 chr3D.!!$R3 1967
4 TraesCS3D01G500900 chr3D 590041883 590044257 2374 False 606.333333 1275 87.292667 2425 4400 3 chr3D.!!$F5 1975
5 TraesCS3D01G500900 chr3B 788982196 788986828 4632 False 1528.000000 4540 92.196750 636 4859 4 chr3B.!!$F4 4223
6 TraesCS3D01G500900 chr3B 789054989 789059110 4121 False 1463.666667 2510 86.323333 880 4738 3 chr3B.!!$F5 3858
7 TraesCS3D01G500900 chr3B 788932688 788938632 5944 False 1236.200000 4460 92.385600 160 4859 5 chr3B.!!$F3 4699
8 TraesCS3D01G500900 chr3B 789182055 789183336 1281 True 1201.000000 1201 83.769000 3108 4392 1 chr3B.!!$R1 1284
9 TraesCS3D01G500900 chr3B 789218450 789220592 2142 False 267.500000 350 79.574000 1448 2968 2 chr3B.!!$F6 1520
10 TraesCS3D01G500900 chr3A 719835372 719839433 4061 False 1485.666667 3048 88.695000 160 4624 3 chr3A.!!$F6 4464
11 TraesCS3D01G500900 chr3A 719778529 719779787 1258 False 1216.000000 1216 84.385000 3155 4400 1 chr3A.!!$F2 1245
12 TraesCS3D01G500900 chr3A 719938318 719940365 2047 True 822.000000 1230 81.541500 2429 4392 2 chr3A.!!$R2 1963
13 TraesCS3D01G500900 chr3A 720075894 720078767 2873 False 207.500000 281 79.153500 1448 4416 2 chr3A.!!$F7 2968

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 144 0.034186 ACCCGGTACACACTATCGGA 60.034 55.000 0.00 0.0 42.94 4.55 F
529 530 0.035036 TTTATCACCGCGACCAACCA 59.965 50.000 8.23 0.0 0.00 3.67 F
1160 1199 0.034896 AAGGCCGTGTCCAACACTAG 59.965 55.000 8.44 0.0 46.46 2.57 F
1437 1476 0.393077 ACCTCAACTTCACGACAGGG 59.607 55.000 0.00 0.0 0.00 4.45 F
2286 4970 1.144093 CACTGACAAGGGGGTAAACCA 59.856 52.381 0.81 0.0 42.91 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1107 1146 0.118144 AGGAGAGGAGCAGGAGGTTT 59.882 55.000 0.00 0.0 0.00 3.27 R
1862 2460 0.461135 GCCATTTCGCCATGTCCAAT 59.539 50.000 0.00 0.0 0.00 3.16 R
2742 5821 0.105964 TGGCAGCCTGGTGGTTTAAA 60.106 50.000 14.15 0.0 35.27 1.52 R
2749 5828 1.001020 TATTGGTGGCAGCCTGGTG 60.001 57.895 14.15 0.0 0.00 4.17 R
4238 8227 5.150683 GCTGTTTAACATTGCAACGACATA 58.849 37.500 0.00 0.0 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.755469 GGTCCGTACCTGCCGGTA 60.755 66.667 1.90 2.41 43.29 4.02
25 26 2.779033 GGTCCGTACCTGCCGGTAG 61.779 68.421 13.36 13.36 46.17 3.18
26 27 3.142838 TCCGTACCTGCCGGTAGC 61.143 66.667 15.00 0.00 46.17 3.58
35 36 3.587095 GCCGGTAGCAAAAGGGTC 58.413 61.111 1.90 0.00 42.97 4.46
36 37 1.302993 GCCGGTAGCAAAAGGGTCA 60.303 57.895 1.90 0.00 42.97 4.02
37 38 1.305930 GCCGGTAGCAAAAGGGTCAG 61.306 60.000 1.90 0.00 42.97 3.51
38 39 0.323629 CCGGTAGCAAAAGGGTCAGA 59.676 55.000 0.00 0.00 0.00 3.27
39 40 1.065418 CCGGTAGCAAAAGGGTCAGAT 60.065 52.381 0.00 0.00 0.00 2.90
40 41 2.280628 CGGTAGCAAAAGGGTCAGATC 58.719 52.381 0.00 0.00 0.00 2.75
41 42 2.093447 CGGTAGCAAAAGGGTCAGATCT 60.093 50.000 0.00 0.00 0.00 2.75
42 43 3.536570 GGTAGCAAAAGGGTCAGATCTC 58.463 50.000 0.00 0.00 0.00 2.75
43 44 2.393271 AGCAAAAGGGTCAGATCTCG 57.607 50.000 0.00 0.00 0.00 4.04
44 45 1.902508 AGCAAAAGGGTCAGATCTCGA 59.097 47.619 0.00 0.00 0.00 4.04
45 46 2.303022 AGCAAAAGGGTCAGATCTCGAA 59.697 45.455 0.00 0.00 0.00 3.71
46 47 3.074412 GCAAAAGGGTCAGATCTCGAAA 58.926 45.455 0.00 0.00 0.00 3.46
47 48 3.691609 GCAAAAGGGTCAGATCTCGAAAT 59.308 43.478 0.00 0.00 0.00 2.17
48 49 4.156739 GCAAAAGGGTCAGATCTCGAAATT 59.843 41.667 0.00 0.00 0.00 1.82
49 50 5.335976 GCAAAAGGGTCAGATCTCGAAATTT 60.336 40.000 0.00 0.00 0.00 1.82
50 51 6.681777 CAAAAGGGTCAGATCTCGAAATTTT 58.318 36.000 0.00 0.00 0.00 1.82
51 52 6.901081 AAAGGGTCAGATCTCGAAATTTTT 57.099 33.333 0.00 0.00 0.00 1.94
89 90 7.334090 TCAGATCTTGACTAAATTTCAGAGGG 58.666 38.462 0.00 0.00 0.00 4.30
90 91 6.541641 CAGATCTTGACTAAATTTCAGAGGGG 59.458 42.308 0.00 0.00 0.00 4.79
91 92 4.589908 TCTTGACTAAATTTCAGAGGGGC 58.410 43.478 0.00 0.00 0.00 5.80
92 93 4.042809 TCTTGACTAAATTTCAGAGGGGCA 59.957 41.667 0.00 0.00 0.00 5.36
93 94 4.380843 TGACTAAATTTCAGAGGGGCAA 57.619 40.909 0.00 0.00 0.00 4.52
94 95 4.735369 TGACTAAATTTCAGAGGGGCAAA 58.265 39.130 0.00 0.00 0.00 3.68
95 96 5.144100 TGACTAAATTTCAGAGGGGCAAAA 58.856 37.500 0.00 0.00 0.00 2.44
96 97 5.010617 TGACTAAATTTCAGAGGGGCAAAAC 59.989 40.000 0.00 0.00 0.00 2.43
97 98 4.898861 ACTAAATTTCAGAGGGGCAAAACA 59.101 37.500 0.00 0.00 0.00 2.83
98 99 3.751479 AATTTCAGAGGGGCAAAACAC 57.249 42.857 0.00 0.00 0.00 3.32
99 100 1.028905 TTTCAGAGGGGCAAAACACG 58.971 50.000 0.00 0.00 0.00 4.49
100 101 0.181587 TTCAGAGGGGCAAAACACGA 59.818 50.000 0.00 0.00 0.00 4.35
101 102 0.181587 TCAGAGGGGCAAAACACGAA 59.818 50.000 0.00 0.00 0.00 3.85
102 103 1.028905 CAGAGGGGCAAAACACGAAA 58.971 50.000 0.00 0.00 0.00 3.46
103 104 1.613437 CAGAGGGGCAAAACACGAAAT 59.387 47.619 0.00 0.00 0.00 2.17
104 105 2.035832 CAGAGGGGCAAAACACGAAATT 59.964 45.455 0.00 0.00 0.00 1.82
105 106 2.698274 AGAGGGGCAAAACACGAAATTT 59.302 40.909 0.00 0.00 0.00 1.82
106 107 3.057019 GAGGGGCAAAACACGAAATTTC 58.943 45.455 8.20 8.20 0.00 2.17
115 116 4.433102 CGAAATTTCGCCGTGTGG 57.567 55.556 26.01 0.00 44.26 4.17
116 117 1.154301 CGAAATTTCGCCGTGTGGG 60.154 57.895 26.01 0.00 44.26 4.61
125 126 3.047877 CCGTGTGGGGAGCGAAAC 61.048 66.667 0.00 0.00 0.00 2.78
126 127 3.047877 CGTGTGGGGAGCGAAACC 61.048 66.667 0.00 0.00 0.00 3.27
136 137 3.247046 GCGAAACCCGGTACACAC 58.753 61.111 0.00 0.00 39.04 3.82
137 138 1.301165 GCGAAACCCGGTACACACT 60.301 57.895 0.00 0.00 39.04 3.55
138 139 0.038343 GCGAAACCCGGTACACACTA 60.038 55.000 0.00 0.00 39.04 2.74
139 140 1.404583 GCGAAACCCGGTACACACTAT 60.405 52.381 0.00 0.00 39.04 2.12
140 141 2.533266 CGAAACCCGGTACACACTATC 58.467 52.381 0.00 0.00 33.91 2.08
141 142 2.533266 GAAACCCGGTACACACTATCG 58.467 52.381 0.00 0.00 0.00 2.92
142 143 0.819582 AACCCGGTACACACTATCGG 59.180 55.000 0.00 0.00 40.32 4.18
143 144 0.034186 ACCCGGTACACACTATCGGA 60.034 55.000 0.00 0.00 42.94 4.55
144 145 0.666913 CCCGGTACACACTATCGGAG 59.333 60.000 0.00 0.00 42.94 4.63
145 146 1.671979 CCGGTACACACTATCGGAGA 58.328 55.000 0.00 0.00 42.94 3.71
146 147 1.332997 CCGGTACACACTATCGGAGAC 59.667 57.143 0.00 0.00 42.51 3.36
147 148 1.332997 CGGTACACACTATCGGAGACC 59.667 57.143 0.00 0.00 42.51 3.85
148 149 2.372264 GGTACACACTATCGGAGACCA 58.628 52.381 0.00 0.00 42.51 4.02
149 150 2.098770 GGTACACACTATCGGAGACCAC 59.901 54.545 0.00 0.00 42.51 4.16
150 151 0.809385 ACACACTATCGGAGACCACG 59.191 55.000 0.00 0.00 42.51 4.94
151 152 1.092348 CACACTATCGGAGACCACGA 58.908 55.000 0.00 0.00 42.51 4.35
152 153 1.064208 CACACTATCGGAGACCACGAG 59.936 57.143 0.00 0.00 44.24 4.18
153 154 1.065636 ACACTATCGGAGACCACGAGA 60.066 52.381 0.00 0.00 44.24 4.04
154 155 2.222886 CACTATCGGAGACCACGAGAT 58.777 52.381 0.00 0.00 44.24 2.75
155 156 3.181457 ACACTATCGGAGACCACGAGATA 60.181 47.826 0.00 0.00 44.24 1.98
156 157 4.004314 CACTATCGGAGACCACGAGATAT 58.996 47.826 0.00 0.00 44.24 1.63
157 158 4.004314 ACTATCGGAGACCACGAGATATG 58.996 47.826 0.00 0.00 44.24 1.78
158 159 2.632987 TCGGAGACCACGAGATATGA 57.367 50.000 0.00 0.00 35.12 2.15
163 164 1.604755 AGACCACGAGATATGAGCGTC 59.395 52.381 0.00 0.00 35.90 5.19
166 167 0.999228 CACGAGATATGAGCGTCGGC 60.999 60.000 0.00 0.00 35.90 5.54
180 181 1.121240 GTCGGCGTTATCGTGATCAG 58.879 55.000 6.85 0.00 39.49 2.90
196 197 1.374125 CAGCCATCACGTCCACGAA 60.374 57.895 6.03 0.00 43.02 3.85
204 205 2.430244 CGTCCACGAACCGGTGAG 60.430 66.667 8.52 8.13 43.02 3.51
244 245 6.680874 ACGTACGAAGATGAATAGAAGACT 57.319 37.500 24.41 0.00 0.00 3.24
245 246 7.783090 ACGTACGAAGATGAATAGAAGACTA 57.217 36.000 24.41 0.00 0.00 2.59
246 247 7.853524 ACGTACGAAGATGAATAGAAGACTAG 58.146 38.462 24.41 0.00 31.78 2.57
247 248 7.495279 ACGTACGAAGATGAATAGAAGACTAGT 59.505 37.037 24.41 0.00 31.78 2.57
250 251 8.967664 ACGAAGATGAATAGAAGACTAGTAGT 57.032 34.615 1.37 1.37 31.78 2.73
251 252 9.398538 ACGAAGATGAATAGAAGACTAGTAGTT 57.601 33.333 3.85 0.00 31.78 2.24
252 253 9.658475 CGAAGATGAATAGAAGACTAGTAGTTG 57.342 37.037 3.85 0.00 31.78 3.16
253 254 9.959749 GAAGATGAATAGAAGACTAGTAGTTGG 57.040 37.037 3.85 0.00 31.78 3.77
254 255 8.472007 AGATGAATAGAAGACTAGTAGTTGGG 57.528 38.462 3.85 0.00 31.78 4.12
255 256 6.466885 TGAATAGAAGACTAGTAGTTGGGC 57.533 41.667 3.85 0.00 31.78 5.36
256 257 5.067413 TGAATAGAAGACTAGTAGTTGGGCG 59.933 44.000 3.85 0.00 31.78 6.13
257 258 1.477295 AGAAGACTAGTAGTTGGGCGC 59.523 52.381 3.85 0.00 0.00 6.53
258 259 0.535797 AAGACTAGTAGTTGGGCGCC 59.464 55.000 21.18 21.18 0.00 6.53
259 260 0.613853 AGACTAGTAGTTGGGCGCCA 60.614 55.000 30.85 12.04 0.00 5.69
260 261 0.459759 GACTAGTAGTTGGGCGCCAC 60.460 60.000 30.85 19.41 30.78 5.01
261 262 1.153429 CTAGTAGTTGGGCGCCACC 60.153 63.158 30.85 15.15 30.78 4.61
283 284 2.742372 GGCGCCGCTTGAGAGAAA 60.742 61.111 12.58 0.00 0.00 2.52
284 285 2.744768 GGCGCCGCTTGAGAGAAAG 61.745 63.158 12.58 0.00 0.00 2.62
285 286 2.029844 GCGCCGCTTGAGAGAAAGT 61.030 57.895 0.00 0.00 0.00 2.66
286 287 1.569479 GCGCCGCTTGAGAGAAAGTT 61.569 55.000 0.00 0.00 0.00 2.66
287 288 0.164647 CGCCGCTTGAGAGAAAGTTG 59.835 55.000 0.00 0.00 0.00 3.16
288 289 1.230324 GCCGCTTGAGAGAAAGTTGT 58.770 50.000 0.00 0.00 0.00 3.32
289 290 1.069636 GCCGCTTGAGAGAAAGTTGTG 60.070 52.381 0.00 0.00 0.00 3.33
290 291 2.213499 CCGCTTGAGAGAAAGTTGTGT 58.787 47.619 0.00 0.00 0.00 3.72
291 292 2.032549 CCGCTTGAGAGAAAGTTGTGTG 60.033 50.000 0.00 0.00 0.00 3.82
292 293 2.866156 CGCTTGAGAGAAAGTTGTGTGA 59.134 45.455 0.00 0.00 0.00 3.58
293 294 3.309682 CGCTTGAGAGAAAGTTGTGTGAA 59.690 43.478 0.00 0.00 0.00 3.18
294 295 4.024556 CGCTTGAGAGAAAGTTGTGTGAAT 60.025 41.667 0.00 0.00 0.00 2.57
295 296 5.210715 GCTTGAGAGAAAGTTGTGTGAATG 58.789 41.667 0.00 0.00 0.00 2.67
296 297 5.220931 GCTTGAGAGAAAGTTGTGTGAATGT 60.221 40.000 0.00 0.00 0.00 2.71
297 298 6.678900 GCTTGAGAGAAAGTTGTGTGAATGTT 60.679 38.462 0.00 0.00 0.00 2.71
298 299 6.757897 TGAGAGAAAGTTGTGTGAATGTTT 57.242 33.333 0.00 0.00 0.00 2.83
299 300 7.156876 TGAGAGAAAGTTGTGTGAATGTTTT 57.843 32.000 0.00 0.00 0.00 2.43
300 301 7.250569 TGAGAGAAAGTTGTGTGAATGTTTTC 58.749 34.615 0.00 0.00 0.00 2.29
301 302 7.094420 TGAGAGAAAGTTGTGTGAATGTTTTCA 60.094 33.333 0.00 0.00 39.54 2.69
302 303 7.775120 AGAGAAAGTTGTGTGAATGTTTTCAT 58.225 30.769 0.00 0.00 43.49 2.57
332 333 4.792521 AATACATAGAGTCATCGCCTCC 57.207 45.455 0.00 0.00 0.00 4.30
333 334 0.955178 ACATAGAGTCATCGCCTCCG 59.045 55.000 0.00 0.00 0.00 4.63
334 335 0.955178 CATAGAGTCATCGCCTCCGT 59.045 55.000 0.00 0.00 35.54 4.69
335 336 1.068885 CATAGAGTCATCGCCTCCGTC 60.069 57.143 0.00 0.00 35.54 4.79
336 337 0.180642 TAGAGTCATCGCCTCCGTCT 59.819 55.000 0.00 0.00 35.54 4.18
337 338 0.180642 AGAGTCATCGCCTCCGTCTA 59.819 55.000 0.00 0.00 35.54 2.59
338 339 1.022735 GAGTCATCGCCTCCGTCTAA 58.977 55.000 0.00 0.00 35.54 2.10
339 340 1.404391 GAGTCATCGCCTCCGTCTAAA 59.596 52.381 0.00 0.00 35.54 1.85
340 341 1.822990 AGTCATCGCCTCCGTCTAAAA 59.177 47.619 0.00 0.00 35.54 1.52
341 342 2.232941 AGTCATCGCCTCCGTCTAAAAA 59.767 45.455 0.00 0.00 35.54 1.94
378 379 7.576861 AAAAATCCTCACCTTCGTCTAAAAA 57.423 32.000 0.00 0.00 0.00 1.94
409 410 4.605640 AAAAATTACCACTGCAGTGCAT 57.394 36.364 36.38 28.18 44.34 3.96
410 411 5.720371 AAAAATTACCACTGCAGTGCATA 57.280 34.783 36.38 27.22 44.34 3.14
411 412 5.720371 AAAATTACCACTGCAGTGCATAA 57.280 34.783 36.38 32.15 44.34 1.90
412 413 4.701956 AATTACCACTGCAGTGCATAAC 57.298 40.909 36.38 0.00 44.34 1.89
413 414 2.107950 TACCACTGCAGTGCATAACC 57.892 50.000 36.38 0.00 44.34 2.85
414 415 0.609131 ACCACTGCAGTGCATAACCC 60.609 55.000 36.38 0.00 44.34 4.11
415 416 0.322816 CCACTGCAGTGCATAACCCT 60.323 55.000 36.38 0.31 44.34 4.34
416 417 0.806868 CACTGCAGTGCATAACCCTG 59.193 55.000 32.39 7.53 38.13 4.45
427 428 5.991933 TGCATAACCCTGCATTTAGAAAA 57.008 34.783 0.00 0.00 46.76 2.29
428 429 6.543430 TGCATAACCCTGCATTTAGAAAAT 57.457 33.333 0.00 0.00 46.76 1.82
429 430 7.652524 TGCATAACCCTGCATTTAGAAAATA 57.347 32.000 0.00 0.00 46.76 1.40
430 431 7.488322 TGCATAACCCTGCATTTAGAAAATAC 58.512 34.615 0.00 0.00 46.76 1.89
431 432 6.636850 GCATAACCCTGCATTTAGAAAATACG 59.363 38.462 0.00 0.00 41.87 3.06
432 433 7.468084 GCATAACCCTGCATTTAGAAAATACGA 60.468 37.037 0.00 0.00 41.87 3.43
433 434 6.436843 AACCCTGCATTTAGAAAATACGAG 57.563 37.500 0.00 0.00 0.00 4.18
434 435 5.741011 ACCCTGCATTTAGAAAATACGAGA 58.259 37.500 0.00 0.00 0.00 4.04
435 436 5.817816 ACCCTGCATTTAGAAAATACGAGAG 59.182 40.000 0.00 0.00 0.00 3.20
436 437 6.049149 CCCTGCATTTAGAAAATACGAGAGA 58.951 40.000 0.00 0.00 0.00 3.10
437 438 6.708054 CCCTGCATTTAGAAAATACGAGAGAT 59.292 38.462 0.00 0.00 0.00 2.75
438 439 7.307632 CCCTGCATTTAGAAAATACGAGAGATG 60.308 40.741 0.00 0.00 0.00 2.90
439 440 6.948353 TGCATTTAGAAAATACGAGAGATGC 58.052 36.000 0.00 0.00 37.32 3.91
440 441 6.763135 TGCATTTAGAAAATACGAGAGATGCT 59.237 34.615 0.00 0.00 37.59 3.79
441 442 7.926018 TGCATTTAGAAAATACGAGAGATGCTA 59.074 33.333 0.00 0.00 37.59 3.49
442 443 8.217778 GCATTTAGAAAATACGAGAGATGCTAC 58.782 37.037 0.00 0.00 34.81 3.58
443 444 8.704234 CATTTAGAAAATACGAGAGATGCTACC 58.296 37.037 0.00 0.00 0.00 3.18
444 445 7.584122 TTAGAAAATACGAGAGATGCTACCT 57.416 36.000 0.00 0.00 0.00 3.08
445 446 6.079424 AGAAAATACGAGAGATGCTACCTC 57.921 41.667 0.00 0.00 0.00 3.85
446 447 4.857509 AAATACGAGAGATGCTACCTCC 57.142 45.455 0.00 0.00 0.00 4.30
447 448 3.510531 ATACGAGAGATGCTACCTCCA 57.489 47.619 0.00 0.00 0.00 3.86
448 449 2.373335 ACGAGAGATGCTACCTCCAT 57.627 50.000 0.00 0.00 0.00 3.41
449 450 2.235016 ACGAGAGATGCTACCTCCATC 58.765 52.381 0.00 0.00 39.44 3.51
451 452 3.073209 ACGAGAGATGCTACCTCCATCTA 59.927 47.826 4.08 0.00 46.88 1.98
452 453 4.075682 CGAGAGATGCTACCTCCATCTAA 58.924 47.826 4.08 0.00 46.88 2.10
453 454 4.520874 CGAGAGATGCTACCTCCATCTAAA 59.479 45.833 4.08 0.00 46.88 1.85
454 455 5.010112 CGAGAGATGCTACCTCCATCTAAAA 59.990 44.000 4.08 0.00 46.88 1.52
455 456 6.461648 CGAGAGATGCTACCTCCATCTAAAAA 60.462 42.308 4.08 0.00 46.88 1.94
456 457 6.825610 AGAGATGCTACCTCCATCTAAAAAG 58.174 40.000 4.08 0.00 46.88 2.27
457 458 6.613271 AGAGATGCTACCTCCATCTAAAAAGA 59.387 38.462 4.08 0.00 46.88 2.52
458 459 7.126421 AGAGATGCTACCTCCATCTAAAAAGAA 59.874 37.037 4.08 0.00 46.88 2.52
459 460 7.633789 AGATGCTACCTCCATCTAAAAAGAAA 58.366 34.615 2.31 0.00 45.53 2.52
460 461 8.109634 AGATGCTACCTCCATCTAAAAAGAAAA 58.890 33.333 2.31 0.00 45.53 2.29
461 462 8.650143 ATGCTACCTCCATCTAAAAAGAAAAA 57.350 30.769 0.00 0.00 0.00 1.94
526 527 4.506886 AAAAATTTATCACCGCGACCAA 57.493 36.364 8.23 0.00 0.00 3.67
527 528 3.481112 AAATTTATCACCGCGACCAAC 57.519 42.857 8.23 0.00 0.00 3.77
528 529 1.375551 ATTTATCACCGCGACCAACC 58.624 50.000 8.23 0.00 0.00 3.77
529 530 0.035036 TTTATCACCGCGACCAACCA 59.965 50.000 8.23 0.00 0.00 3.67
530 531 0.390603 TTATCACCGCGACCAACCAG 60.391 55.000 8.23 0.00 0.00 4.00
531 532 2.845752 TATCACCGCGACCAACCAGC 62.846 60.000 8.23 0.00 0.00 4.85
532 533 4.988598 CACCGCGACCAACCAGCT 62.989 66.667 8.23 0.00 0.00 4.24
533 534 4.250305 ACCGCGACCAACCAGCTT 62.250 61.111 8.23 0.00 0.00 3.74
534 535 3.726517 CCGCGACCAACCAGCTTG 61.727 66.667 8.23 0.00 0.00 4.01
535 536 4.389576 CGCGACCAACCAGCTTGC 62.390 66.667 0.00 0.00 0.00 4.01
536 537 4.389576 GCGACCAACCAGCTTGCG 62.390 66.667 0.00 0.00 0.00 4.85
537 538 4.389576 CGACCAACCAGCTTGCGC 62.390 66.667 0.00 0.00 0.00 6.09
538 539 4.043200 GACCAACCAGCTTGCGCC 62.043 66.667 4.18 0.00 36.60 6.53
539 540 4.892965 ACCAACCAGCTTGCGCCA 62.893 61.111 4.18 0.00 36.60 5.69
540 541 3.376078 CCAACCAGCTTGCGCCAT 61.376 61.111 4.18 0.00 36.60 4.40
541 542 2.126228 CAACCAGCTTGCGCCATG 60.126 61.111 4.18 0.00 36.60 3.66
542 543 2.598394 AACCAGCTTGCGCCATGT 60.598 55.556 4.18 0.00 36.60 3.21
543 544 2.922950 AACCAGCTTGCGCCATGTG 61.923 57.895 4.18 0.00 36.60 3.21
544 545 4.124351 CCAGCTTGCGCCATGTGG 62.124 66.667 4.18 2.86 36.60 4.17
554 555 4.993307 CCATGTGGCATAGCTGGT 57.007 55.556 0.00 0.00 0.00 4.00
555 556 3.196040 CCATGTGGCATAGCTGGTT 57.804 52.632 0.00 0.00 0.00 3.67
556 557 0.742505 CCATGTGGCATAGCTGGTTG 59.257 55.000 0.00 0.00 0.00 3.77
557 558 0.742505 CATGTGGCATAGCTGGTTGG 59.257 55.000 0.00 0.00 0.00 3.77
558 559 1.039233 ATGTGGCATAGCTGGTTGGC 61.039 55.000 0.00 4.54 38.77 4.52
559 560 2.044053 TGGCATAGCTGGTTGGCC 60.044 61.111 14.30 12.70 44.82 5.36
560 561 3.211963 GGCATAGCTGGTTGGCCG 61.212 66.667 0.00 0.00 37.67 6.13
561 562 3.892581 GCATAGCTGGTTGGCCGC 61.893 66.667 0.00 0.00 37.67 6.53
562 563 3.211963 CATAGCTGGTTGGCCGCC 61.212 66.667 1.04 1.04 37.67 6.13
563 564 4.506255 ATAGCTGGTTGGCCGCCC 62.506 66.667 7.03 8.51 37.67 6.13
567 568 4.659172 CTGGTTGGCCGCCCTTCA 62.659 66.667 7.03 1.26 37.67 3.02
568 569 3.944250 CTGGTTGGCCGCCCTTCAT 62.944 63.158 7.03 0.00 37.67 2.57
569 570 3.451894 GGTTGGCCGCCCTTCATG 61.452 66.667 7.03 0.00 0.00 3.07
570 571 4.133796 GTTGGCCGCCCTTCATGC 62.134 66.667 7.03 0.00 0.00 4.06
595 596 7.678226 CGTAGCTTAATGTGTTTAATAACGGT 58.322 34.615 0.00 0.00 37.06 4.83
596 597 7.633281 CGTAGCTTAATGTGTTTAATAACGGTG 59.367 37.037 0.00 0.00 37.06 4.94
609 610 3.364441 CGGTGACCCACGACGGTA 61.364 66.667 0.00 0.00 35.79 4.02
631 632 1.741770 GCAAGACCAAGACGGCGAT 60.742 57.895 16.62 0.00 39.03 4.58
676 677 0.678048 AAGATGGGCAGCTTTCGGTC 60.678 55.000 0.00 0.00 32.43 4.79
717 718 1.271434 GGTCTTGGGTCTTGGGTCTTC 60.271 57.143 0.00 0.00 0.00 2.87
749 750 2.052237 CACACCACTCAAACGCGC 60.052 61.111 5.73 0.00 0.00 6.86
762 763 1.697772 AACGCGCGTCAGTCAAACAA 61.698 50.000 37.77 0.00 0.00 2.83
793 794 9.710818 TGTTGATAACTAAATACTACTCCCTCT 57.289 33.333 0.00 0.00 0.00 3.69
794 795 9.968870 GTTGATAACTAAATACTACTCCCTCTG 57.031 37.037 0.00 0.00 0.00 3.35
795 796 9.710818 TTGATAACTAAATACTACTCCCTCTGT 57.289 33.333 0.00 0.00 0.00 3.41
796 797 9.352191 TGATAACTAAATACTACTCCCTCTGTC 57.648 37.037 0.00 0.00 0.00 3.51
797 798 8.709272 ATAACTAAATACTACTCCCTCTGTCC 57.291 38.462 0.00 0.00 0.00 4.02
798 799 5.456779 ACTAAATACTACTCCCTCTGTCCC 58.543 45.833 0.00 0.00 0.00 4.46
799 800 4.348020 AAATACTACTCCCTCTGTCCCA 57.652 45.455 0.00 0.00 0.00 4.37
800 801 4.561254 AATACTACTCCCTCTGTCCCAT 57.439 45.455 0.00 0.00 0.00 4.00
801 802 5.681494 AATACTACTCCCTCTGTCCCATA 57.319 43.478 0.00 0.00 0.00 2.74
802 803 5.681494 ATACTACTCCCTCTGTCCCATAA 57.319 43.478 0.00 0.00 0.00 1.90
803 804 4.561254 ACTACTCCCTCTGTCCCATAAT 57.439 45.455 0.00 0.00 0.00 1.28
804 805 5.681494 ACTACTCCCTCTGTCCCATAATA 57.319 43.478 0.00 0.00 0.00 0.98
805 806 6.234404 ACTACTCCCTCTGTCCCATAATAT 57.766 41.667 0.00 0.00 0.00 1.28
806 807 7.358255 ACTACTCCCTCTGTCCCATAATATA 57.642 40.000 0.00 0.00 0.00 0.86
807 808 7.415086 ACTACTCCCTCTGTCCCATAATATAG 58.585 42.308 0.00 0.00 0.00 1.31
808 809 6.485388 ACTCCCTCTGTCCCATAATATAGA 57.515 41.667 0.00 0.00 0.00 1.98
809 810 6.498538 ACTCCCTCTGTCCCATAATATAGAG 58.501 44.000 0.00 0.00 33.29 2.43
810 811 5.273208 TCCCTCTGTCCCATAATATAGAGC 58.727 45.833 0.00 0.00 32.41 4.09
811 812 4.098654 CCCTCTGTCCCATAATATAGAGCG 59.901 50.000 0.00 0.00 32.41 5.03
812 813 4.707448 CCTCTGTCCCATAATATAGAGCGT 59.293 45.833 0.00 0.00 32.41 5.07
813 814 5.186021 CCTCTGTCCCATAATATAGAGCGTT 59.814 44.000 0.00 0.00 32.41 4.84
814 815 6.295349 CCTCTGTCCCATAATATAGAGCGTTT 60.295 42.308 0.00 0.00 32.41 3.60
815 816 7.062749 TCTGTCCCATAATATAGAGCGTTTT 57.937 36.000 0.00 0.00 0.00 2.43
816 817 7.506114 TCTGTCCCATAATATAGAGCGTTTTT 58.494 34.615 0.00 0.00 0.00 1.94
859 860 8.867112 AAAAACGCTCTTATATTATGAGACGA 57.133 30.769 18.20 0.00 35.57 4.20
860 861 8.867112 AAAACGCTCTTATATTATGAGACGAA 57.133 30.769 18.20 0.00 35.57 3.85
861 862 8.508800 AAACGCTCTTATATTATGAGACGAAG 57.491 34.615 18.20 4.07 35.57 3.79
862 863 6.613233 ACGCTCTTATATTATGAGACGAAGG 58.387 40.000 18.20 3.81 35.57 3.46
863 864 6.030849 CGCTCTTATATTATGAGACGAAGGG 58.969 44.000 11.45 2.16 34.62 3.95
864 865 6.127980 CGCTCTTATATTATGAGACGAAGGGA 60.128 42.308 11.45 0.00 34.62 4.20
865 866 7.254852 GCTCTTATATTATGAGACGAAGGGAG 58.745 42.308 0.00 0.00 33.20 4.30
876 877 4.459330 AGACGAAGGGAGTACATAGTACC 58.541 47.826 3.85 0.00 0.00 3.34
903 904 4.577283 CAGCACATCACCATGAATGTGATA 59.423 41.667 26.46 3.32 45.08 2.15
909 910 7.012989 CACATCACCATGAATGTGATACTGATT 59.987 37.037 21.55 0.00 45.08 2.57
967 980 8.947055 AATAAATAGAAAACCATGCATCAACC 57.053 30.769 0.00 0.00 0.00 3.77
979 992 1.479323 GCATCAACCATCTTGTGCCAT 59.521 47.619 0.00 0.00 0.00 4.40
996 1014 1.014352 CATTGCCCGGTGTAAGCTAC 58.986 55.000 0.00 0.00 0.00 3.58
1015 1033 2.319844 ACTCGATGGACATGGCTATCA 58.680 47.619 23.19 10.48 0.00 2.15
1107 1146 1.133945 TCAAACAGCACCTACCAAGCA 60.134 47.619 0.00 0.00 0.00 3.91
1158 1197 1.525995 CAAGGCCGTGTCCAACACT 60.526 57.895 10.93 0.00 46.46 3.55
1160 1199 0.034896 AAGGCCGTGTCCAACACTAG 59.965 55.000 8.44 0.00 46.46 2.57
1216 1255 1.102222 GGACATCGTCTACGCCCTCT 61.102 60.000 0.00 0.00 39.60 3.69
1314 1353 3.890147 AGAGCTACCCGTACAATAAGGAG 59.110 47.826 0.00 0.00 0.00 3.69
1392 1431 1.742761 CCAACAGCACCGAAGATCAT 58.257 50.000 0.00 0.00 0.00 2.45
1408 1447 4.165760 AGATCATATGAGCTGGATCACCA 58.834 43.478 22.22 0.00 39.62 4.17
1437 1476 0.393077 ACCTCAACTTCACGACAGGG 59.607 55.000 0.00 0.00 0.00 4.45
1650 2188 2.004583 CGCAAGGTGGTCGAATTCTA 57.995 50.000 3.52 0.00 0.00 2.10
1829 2427 1.809684 GTCCAAGAACAGCAGGGTAC 58.190 55.000 0.00 0.00 0.00 3.34
1876 4147 3.358111 TCCTTAATTGGACATGGCGAA 57.642 42.857 0.00 0.00 0.00 4.70
1922 4214 9.664332 TTGATTCAGAAAAATTGTGGAGAAAAA 57.336 25.926 0.00 0.00 0.00 1.94
1956 4393 1.613255 GGAATTCCCTCGGACTTTGCA 60.613 52.381 14.03 0.00 0.00 4.08
2071 4551 8.417884 GGAGGGAGTATAATCTATGCTACATTC 58.582 40.741 0.00 0.00 33.84 2.67
2286 4970 1.144093 CACTGACAAGGGGGTAAACCA 59.856 52.381 0.81 0.00 42.91 3.67
2294 4978 5.910931 ACAAGGGGGTAAACCATTAGAATT 58.089 37.500 0.81 0.00 42.91 2.17
2330 5014 4.099419 AGGTCACTGAAAAATGGGTGAAAC 59.901 41.667 0.00 0.00 39.83 2.78
2332 5016 5.300792 GGTCACTGAAAAATGGGTGAAACTA 59.699 40.000 0.00 0.00 39.83 2.24
2333 5017 6.183360 GGTCACTGAAAAATGGGTGAAACTAA 60.183 38.462 0.00 0.00 39.83 2.24
2385 5095 6.899393 TTAATTTGTCAGGCTGATTTGTCT 57.101 33.333 21.84 6.82 0.00 3.41
2742 5821 7.233348 TGTTCTCTCAATTTAGGAAAGGCAAAT 59.767 33.333 0.00 0.00 0.00 2.32
2749 5828 9.278978 TCAATTTAGGAAAGGCAAATTTAAACC 57.721 29.630 0.00 0.00 31.27 3.27
3013 6102 4.032310 AGATTGGCTGGCCATTAATCAAA 58.968 39.130 25.84 10.09 46.64 2.69
3020 6111 4.268405 GCTGGCCATTAATCAAAACATTCG 59.732 41.667 5.51 0.00 0.00 3.34
3440 7263 7.111247 ACCATATTTTGTATTGTGGTCCATG 57.889 36.000 0.00 0.00 35.12 3.66
3700 7523 1.454201 GGAAGCACAAAGAGGGTAGC 58.546 55.000 0.00 0.00 0.00 3.58
3780 7606 9.498176 ACAATACCTTTTATTAGTTGACGAACT 57.502 29.630 0.00 0.00 44.90 3.01
3817 7648 9.545105 TTTTGATATGATGTTTTCTTGTGCTTT 57.455 25.926 0.00 0.00 0.00 3.51
3834 7665 4.681483 GTGCTTTTAACTCATTTCAGTGGC 59.319 41.667 0.00 0.00 0.00 5.01
4238 8227 1.203237 TGATCGACCCACCATGTCAT 58.797 50.000 0.00 0.00 32.91 3.06
4572 8617 8.083462 TGTAGCAACTGAATAAAGTTACACTG 57.917 34.615 0.00 0.00 38.34 3.66
4599 8644 3.627395 AACATCACATCATACACGGGT 57.373 42.857 0.00 0.00 0.00 5.28
4703 8758 0.325671 TGTCATCCTCCCAGACCCTC 60.326 60.000 0.00 0.00 0.00 4.30
4722 8780 2.032071 CTTCGTCACCCCCACCAC 59.968 66.667 0.00 0.00 0.00 4.16
4739 8797 2.756283 CGTCCTCCTCGCCTTCCT 60.756 66.667 0.00 0.00 0.00 3.36
4749 8807 3.412408 GCCTTCCTCCACCTCCCC 61.412 72.222 0.00 0.00 0.00 4.81
4756 8814 4.974438 TCCACCTCCCCTGCGGTT 62.974 66.667 0.00 0.00 0.00 4.44
4769 8827 3.007973 GCGGTTCTCCTCGCCTTCT 62.008 63.158 0.00 0.00 45.42 2.85
4775 8833 0.039764 TCTCCTCGCCTTCTTCCTCA 59.960 55.000 0.00 0.00 0.00 3.86
4780 8838 2.959484 CGCCTTCTTCCTCAGCCCA 61.959 63.158 0.00 0.00 0.00 5.36
4783 8841 1.078848 CTTCTTCCTCAGCCCACCG 60.079 63.158 0.00 0.00 0.00 4.94
4790 8848 3.320879 CTCAGCCCACCGAGCACAT 62.321 63.158 0.00 0.00 0.00 3.21
4808 8866 0.827368 ATCGAGTCCTCCTCCTTTGC 59.173 55.000 0.00 0.00 36.82 3.68
4837 8895 1.547372 TCGCTCGCTACTTAGGGTTTT 59.453 47.619 0.72 0.00 37.50 2.43
4838 8896 2.028748 TCGCTCGCTACTTAGGGTTTTT 60.029 45.455 0.72 0.00 37.50 1.94
4845 8903 4.753107 CGCTACTTAGGGTTTTTGAGAACA 59.247 41.667 0.00 0.00 0.00 3.18
4846 8904 5.411669 CGCTACTTAGGGTTTTTGAGAACAT 59.588 40.000 0.00 0.00 0.00 2.71
4859 8917 4.019792 TGAGAACATATGCAGTGGTTGT 57.980 40.909 1.58 1.14 0.00 3.32
4860 8918 4.002982 TGAGAACATATGCAGTGGTTGTC 58.997 43.478 13.80 13.80 35.01 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.302993 TGACCCTTTTGCTACCGGC 60.303 57.895 0.00 0.00 42.22 6.13
19 20 0.323629 TCTGACCCTTTTGCTACCGG 59.676 55.000 0.00 0.00 0.00 5.28
20 21 2.093447 AGATCTGACCCTTTTGCTACCG 60.093 50.000 0.00 0.00 0.00 4.02
21 22 3.536570 GAGATCTGACCCTTTTGCTACC 58.463 50.000 0.00 0.00 0.00 3.18
22 23 3.119101 TCGAGATCTGACCCTTTTGCTAC 60.119 47.826 0.00 0.00 0.00 3.58
23 24 3.096852 TCGAGATCTGACCCTTTTGCTA 58.903 45.455 0.00 0.00 0.00 3.49
24 25 1.902508 TCGAGATCTGACCCTTTTGCT 59.097 47.619 0.00 0.00 0.00 3.91
25 26 2.386661 TCGAGATCTGACCCTTTTGC 57.613 50.000 0.00 0.00 0.00 3.68
26 27 5.886960 AATTTCGAGATCTGACCCTTTTG 57.113 39.130 0.00 0.00 0.00 2.44
27 28 6.901081 AAAATTTCGAGATCTGACCCTTTT 57.099 33.333 0.00 0.00 0.00 2.27
28 29 6.901081 AAAAATTTCGAGATCTGACCCTTT 57.099 33.333 0.00 0.00 0.00 3.11
64 65 7.334090 CCCTCTGAAATTTAGTCAAGATCTGA 58.666 38.462 0.00 0.00 0.00 3.27
65 66 6.541641 CCCCTCTGAAATTTAGTCAAGATCTG 59.458 42.308 0.00 0.00 0.00 2.90
66 67 6.657875 CCCCTCTGAAATTTAGTCAAGATCT 58.342 40.000 0.00 0.00 0.00 2.75
67 68 5.298026 GCCCCTCTGAAATTTAGTCAAGATC 59.702 44.000 0.00 0.00 0.00 2.75
68 69 5.196695 GCCCCTCTGAAATTTAGTCAAGAT 58.803 41.667 0.00 0.00 0.00 2.40
69 70 4.042809 TGCCCCTCTGAAATTTAGTCAAGA 59.957 41.667 0.00 0.00 0.00 3.02
70 71 4.335416 TGCCCCTCTGAAATTTAGTCAAG 58.665 43.478 0.00 0.00 0.00 3.02
71 72 4.380843 TGCCCCTCTGAAATTTAGTCAA 57.619 40.909 0.00 0.00 0.00 3.18
72 73 4.380843 TTGCCCCTCTGAAATTTAGTCA 57.619 40.909 0.00 0.00 0.00 3.41
73 74 5.010617 TGTTTTGCCCCTCTGAAATTTAGTC 59.989 40.000 0.00 0.00 0.00 2.59
74 75 4.898861 TGTTTTGCCCCTCTGAAATTTAGT 59.101 37.500 0.00 0.00 0.00 2.24
75 76 5.230182 GTGTTTTGCCCCTCTGAAATTTAG 58.770 41.667 0.00 0.00 0.00 1.85
76 77 4.261825 CGTGTTTTGCCCCTCTGAAATTTA 60.262 41.667 0.00 0.00 0.00 1.40
77 78 3.492482 CGTGTTTTGCCCCTCTGAAATTT 60.492 43.478 0.00 0.00 0.00 1.82
78 79 2.035832 CGTGTTTTGCCCCTCTGAAATT 59.964 45.455 0.00 0.00 0.00 1.82
79 80 1.613437 CGTGTTTTGCCCCTCTGAAAT 59.387 47.619 0.00 0.00 0.00 2.17
80 81 1.028905 CGTGTTTTGCCCCTCTGAAA 58.971 50.000 0.00 0.00 0.00 2.69
81 82 0.181587 TCGTGTTTTGCCCCTCTGAA 59.818 50.000 0.00 0.00 0.00 3.02
82 83 0.181587 TTCGTGTTTTGCCCCTCTGA 59.818 50.000 0.00 0.00 0.00 3.27
83 84 1.028905 TTTCGTGTTTTGCCCCTCTG 58.971 50.000 0.00 0.00 0.00 3.35
84 85 1.995376 ATTTCGTGTTTTGCCCCTCT 58.005 45.000 0.00 0.00 0.00 3.69
85 86 2.812358 AATTTCGTGTTTTGCCCCTC 57.188 45.000 0.00 0.00 0.00 4.30
86 87 2.544903 CGAAATTTCGTGTTTTGCCCCT 60.545 45.455 28.21 0.00 45.09 4.79
87 88 1.790043 CGAAATTTCGTGTTTTGCCCC 59.210 47.619 28.21 0.00 45.09 5.80
99 100 1.211709 CCCCACACGGCGAAATTTC 59.788 57.895 16.62 8.20 0.00 2.17
100 101 1.228306 TCCCCACACGGCGAAATTT 60.228 52.632 16.62 0.00 0.00 1.82
101 102 1.674322 CTCCCCACACGGCGAAATT 60.674 57.895 16.62 0.00 0.00 1.82
102 103 2.046314 CTCCCCACACGGCGAAAT 60.046 61.111 16.62 0.00 0.00 2.17
108 109 3.047877 GTTTCGCTCCCCACACGG 61.048 66.667 0.00 0.00 0.00 4.94
109 110 3.047877 GGTTTCGCTCCCCACACG 61.048 66.667 0.00 0.00 0.00 4.49
110 111 2.671963 GGGTTTCGCTCCCCACAC 60.672 66.667 0.00 0.00 40.88 3.82
111 112 4.323477 CGGGTTTCGCTCCCCACA 62.323 66.667 0.00 0.00 41.30 4.17
114 115 3.393106 TACCGGGTTTCGCTCCCC 61.393 66.667 4.31 0.00 41.78 4.81
115 116 2.125391 GTACCGGGTTTCGCTCCC 60.125 66.667 4.31 0.00 41.41 4.30
116 117 1.739196 GTGTACCGGGTTTCGCTCC 60.739 63.158 4.31 0.00 37.59 4.70
117 118 1.005867 TGTGTACCGGGTTTCGCTC 60.006 57.895 4.31 0.00 37.59 5.03
118 119 1.301165 GTGTGTACCGGGTTTCGCT 60.301 57.895 4.31 0.00 37.59 4.93
119 120 0.038343 TAGTGTGTACCGGGTTTCGC 60.038 55.000 4.31 6.82 37.59 4.70
120 121 2.533266 GATAGTGTGTACCGGGTTTCG 58.467 52.381 4.31 0.00 38.88 3.46
121 122 2.533266 CGATAGTGTGTACCGGGTTTC 58.467 52.381 4.31 0.00 0.00 2.78
122 123 1.205417 CCGATAGTGTGTACCGGGTTT 59.795 52.381 4.31 0.00 36.81 3.27
123 124 0.819582 CCGATAGTGTGTACCGGGTT 59.180 55.000 4.31 0.00 36.81 4.11
124 125 0.034186 TCCGATAGTGTGTACCGGGT 60.034 55.000 6.32 4.46 40.48 5.28
125 126 0.666913 CTCCGATAGTGTGTACCGGG 59.333 60.000 6.32 0.00 40.48 5.73
126 127 1.332997 GTCTCCGATAGTGTGTACCGG 59.667 57.143 0.00 0.00 41.36 5.28
127 128 1.332997 GGTCTCCGATAGTGTGTACCG 59.667 57.143 0.00 0.00 0.00 4.02
128 129 2.098770 GTGGTCTCCGATAGTGTGTACC 59.901 54.545 0.00 0.00 0.00 3.34
129 130 2.223203 CGTGGTCTCCGATAGTGTGTAC 60.223 54.545 0.00 0.00 0.00 2.90
130 131 2.011947 CGTGGTCTCCGATAGTGTGTA 58.988 52.381 0.00 0.00 0.00 2.90
131 132 0.809385 CGTGGTCTCCGATAGTGTGT 59.191 55.000 0.00 0.00 0.00 3.72
132 133 1.064208 CTCGTGGTCTCCGATAGTGTG 59.936 57.143 0.00 0.00 33.27 3.82
133 134 1.065636 TCTCGTGGTCTCCGATAGTGT 60.066 52.381 0.00 0.00 33.27 3.55
134 135 1.664873 TCTCGTGGTCTCCGATAGTG 58.335 55.000 0.00 0.00 33.27 2.74
135 136 2.642154 ATCTCGTGGTCTCCGATAGT 57.358 50.000 0.00 0.00 33.27 2.12
136 137 4.254492 TCATATCTCGTGGTCTCCGATAG 58.746 47.826 0.00 0.00 33.27 2.08
137 138 4.254492 CTCATATCTCGTGGTCTCCGATA 58.746 47.826 0.00 0.00 33.27 2.92
138 139 3.078097 CTCATATCTCGTGGTCTCCGAT 58.922 50.000 0.00 0.00 33.27 4.18
139 140 2.495084 CTCATATCTCGTGGTCTCCGA 58.505 52.381 0.00 0.00 0.00 4.55
140 141 1.068885 GCTCATATCTCGTGGTCTCCG 60.069 57.143 0.00 0.00 0.00 4.63
141 142 1.068885 CGCTCATATCTCGTGGTCTCC 60.069 57.143 0.00 0.00 0.00 3.71
142 143 1.604755 ACGCTCATATCTCGTGGTCTC 59.395 52.381 0.00 0.00 34.92 3.36
143 144 1.604755 GACGCTCATATCTCGTGGTCT 59.395 52.381 0.00 0.00 36.50 3.85
144 145 1.660614 CGACGCTCATATCTCGTGGTC 60.661 57.143 0.00 0.00 36.50 4.02
145 146 0.308068 CGACGCTCATATCTCGTGGT 59.692 55.000 0.00 0.00 36.50 4.16
146 147 0.386100 CCGACGCTCATATCTCGTGG 60.386 60.000 0.00 0.00 36.50 4.94
147 148 0.999228 GCCGACGCTCATATCTCGTG 60.999 60.000 0.00 0.00 36.50 4.35
148 149 1.283181 GCCGACGCTCATATCTCGT 59.717 57.895 0.00 0.00 39.33 4.18
149 150 1.794003 CGCCGACGCTCATATCTCG 60.794 63.158 0.00 0.00 0.00 4.04
150 151 0.317938 AACGCCGACGCTCATATCTC 60.318 55.000 0.00 0.00 45.53 2.75
151 152 0.949397 TAACGCCGACGCTCATATCT 59.051 50.000 0.00 0.00 45.53 1.98
152 153 1.912110 GATAACGCCGACGCTCATATC 59.088 52.381 0.00 0.00 45.53 1.63
153 154 1.728179 CGATAACGCCGACGCTCATAT 60.728 52.381 0.00 0.00 45.53 1.78
154 155 0.385098 CGATAACGCCGACGCTCATA 60.385 55.000 0.00 0.00 45.53 2.15
155 156 1.657487 CGATAACGCCGACGCTCAT 60.657 57.895 0.00 0.00 45.53 2.90
156 157 2.277692 CGATAACGCCGACGCTCA 60.278 61.111 0.00 0.00 45.53 4.26
157 158 2.277756 ACGATAACGCCGACGCTC 60.278 61.111 0.00 0.00 45.53 5.03
158 159 2.332362 ATCACGATAACGCCGACGCT 62.332 55.000 0.00 0.00 45.53 5.07
163 164 1.548973 GGCTGATCACGATAACGCCG 61.549 60.000 4.34 0.00 43.96 6.46
166 167 2.742774 TGATGGCTGATCACGATAACG 58.257 47.619 0.00 0.00 45.75 3.18
180 181 2.388232 GGTTCGTGGACGTGATGGC 61.388 63.158 0.00 0.00 40.80 4.40
204 205 0.317938 CGTAGCCAGCATAGTCGGAC 60.318 60.000 0.00 0.00 0.00 4.79
212 213 1.100510 TCTTCGTACGTAGCCAGCAT 58.899 50.000 16.05 0.00 0.00 3.79
213 214 1.100510 ATCTTCGTACGTAGCCAGCA 58.899 50.000 16.05 0.00 0.00 4.41
244 245 2.983791 GGTGGCGCCCAACTACTA 59.016 61.111 26.77 0.00 38.38 1.82
266 267 2.742372 TTTCTCTCAAGCGGCGCC 60.742 61.111 30.40 19.07 0.00 6.53
267 268 1.569479 AACTTTCTCTCAAGCGGCGC 61.569 55.000 26.86 26.86 0.00 6.53
268 269 0.164647 CAACTTTCTCTCAAGCGGCG 59.835 55.000 0.51 0.51 0.00 6.46
269 270 1.069636 CACAACTTTCTCTCAAGCGGC 60.070 52.381 0.00 0.00 0.00 6.53
270 271 2.032549 CACACAACTTTCTCTCAAGCGG 60.033 50.000 0.00 0.00 0.00 5.52
271 272 2.866156 TCACACAACTTTCTCTCAAGCG 59.134 45.455 0.00 0.00 0.00 4.68
272 273 4.882671 TTCACACAACTTTCTCTCAAGC 57.117 40.909 0.00 0.00 0.00 4.01
273 274 6.369059 ACATTCACACAACTTTCTCTCAAG 57.631 37.500 0.00 0.00 0.00 3.02
274 275 6.757897 AACATTCACACAACTTTCTCTCAA 57.242 33.333 0.00 0.00 0.00 3.02
275 276 6.757897 AAACATTCACACAACTTTCTCTCA 57.242 33.333 0.00 0.00 0.00 3.27
276 277 7.250569 TGAAAACATTCACACAACTTTCTCTC 58.749 34.615 0.00 0.00 0.00 3.20
277 278 7.156876 TGAAAACATTCACACAACTTTCTCT 57.843 32.000 0.00 0.00 0.00 3.10
278 279 7.992180 ATGAAAACATTCACACAACTTTCTC 57.008 32.000 0.00 0.00 33.23 2.87
279 280 8.776376 AAATGAAAACATTCACACAACTTTCT 57.224 26.923 0.00 0.00 33.23 2.52
280 281 9.900264 GTAAATGAAAACATTCACACAACTTTC 57.100 29.630 0.00 0.00 33.23 2.62
281 282 9.429359 TGTAAATGAAAACATTCACACAACTTT 57.571 25.926 0.00 0.00 33.23 2.66
282 283 8.994429 TGTAAATGAAAACATTCACACAACTT 57.006 26.923 0.00 0.00 33.23 2.66
283 284 8.994429 TTGTAAATGAAAACATTCACACAACT 57.006 26.923 0.00 0.00 31.41 3.16
308 309 5.992217 GGAGGCGATGACTCTATGTATTTTT 59.008 40.000 0.00 0.00 37.91 1.94
309 310 5.542779 GGAGGCGATGACTCTATGTATTTT 58.457 41.667 0.00 0.00 37.91 1.82
310 311 4.321304 CGGAGGCGATGACTCTATGTATTT 60.321 45.833 0.00 0.00 37.91 1.40
311 312 3.191581 CGGAGGCGATGACTCTATGTATT 59.808 47.826 0.00 0.00 37.91 1.89
312 313 2.750166 CGGAGGCGATGACTCTATGTAT 59.250 50.000 0.00 0.00 37.91 2.29
313 314 2.152016 CGGAGGCGATGACTCTATGTA 58.848 52.381 0.00 0.00 37.91 2.29
314 315 0.955178 CGGAGGCGATGACTCTATGT 59.045 55.000 0.00 0.00 37.91 2.29
315 316 0.955178 ACGGAGGCGATGACTCTATG 59.045 55.000 0.00 0.00 37.91 2.23
316 317 1.202830 AGACGGAGGCGATGACTCTAT 60.203 52.381 0.00 0.00 37.91 1.98
317 318 0.180642 AGACGGAGGCGATGACTCTA 59.819 55.000 0.00 0.00 37.91 2.43
318 319 0.180642 TAGACGGAGGCGATGACTCT 59.819 55.000 0.00 0.00 37.91 3.24
319 320 1.022735 TTAGACGGAGGCGATGACTC 58.977 55.000 0.00 0.00 36.87 3.36
320 321 1.471119 TTTAGACGGAGGCGATGACT 58.529 50.000 0.00 0.00 0.00 3.41
321 322 2.288961 TTTTAGACGGAGGCGATGAC 57.711 50.000 0.00 0.00 0.00 3.06
354 355 7.576861 TTTTTAGACGAAGGTGAGGATTTTT 57.423 32.000 0.00 0.00 0.00 1.94
388 389 4.605640 ATGCACTGCAGTGGTAATTTTT 57.394 36.364 39.92 9.58 43.65 1.94
389 390 5.469479 GTTATGCACTGCAGTGGTAATTTT 58.531 37.500 39.92 13.86 43.65 1.82
390 391 4.082245 GGTTATGCACTGCAGTGGTAATTT 60.082 41.667 39.92 14.15 43.65 1.82
391 392 3.443681 GGTTATGCACTGCAGTGGTAATT 59.556 43.478 39.92 14.74 43.65 1.40
392 393 3.016736 GGTTATGCACTGCAGTGGTAAT 58.983 45.455 39.92 22.40 43.65 1.89
393 394 2.432444 GGTTATGCACTGCAGTGGTAA 58.568 47.619 39.92 17.74 43.65 2.85
394 395 1.339631 GGGTTATGCACTGCAGTGGTA 60.340 52.381 39.92 24.24 43.65 3.25
395 396 0.609131 GGGTTATGCACTGCAGTGGT 60.609 55.000 39.92 10.26 43.65 4.16
396 397 0.322816 AGGGTTATGCACTGCAGTGG 60.323 55.000 39.92 25.25 43.65 4.00
397 398 0.806868 CAGGGTTATGCACTGCAGTG 59.193 55.000 37.09 37.09 42.33 3.66
398 399 3.254629 CAGGGTTATGCACTGCAGT 57.745 52.632 15.25 15.25 42.33 4.40
406 407 6.636850 CGTATTTTCTAAATGCAGGGTTATGC 59.363 38.462 0.00 0.00 46.68 3.14
407 408 7.925993 TCGTATTTTCTAAATGCAGGGTTATG 58.074 34.615 0.00 0.00 0.00 1.90
408 409 7.990886 TCTCGTATTTTCTAAATGCAGGGTTAT 59.009 33.333 0.00 0.00 0.00 1.89
409 410 7.332557 TCTCGTATTTTCTAAATGCAGGGTTA 58.667 34.615 0.00 0.00 0.00 2.85
410 411 6.177610 TCTCGTATTTTCTAAATGCAGGGTT 58.822 36.000 0.00 0.00 0.00 4.11
411 412 5.741011 TCTCGTATTTTCTAAATGCAGGGT 58.259 37.500 0.00 0.00 0.00 4.34
412 413 6.049149 TCTCTCGTATTTTCTAAATGCAGGG 58.951 40.000 0.00 0.00 0.00 4.45
413 414 7.571026 CATCTCTCGTATTTTCTAAATGCAGG 58.429 38.462 0.00 0.00 0.00 4.85
414 415 7.042187 AGCATCTCTCGTATTTTCTAAATGCAG 60.042 37.037 0.00 0.00 38.52 4.41
415 416 6.763135 AGCATCTCTCGTATTTTCTAAATGCA 59.237 34.615 0.00 0.00 38.52 3.96
416 417 7.183580 AGCATCTCTCGTATTTTCTAAATGC 57.816 36.000 0.00 0.00 36.83 3.56
417 418 8.704234 GGTAGCATCTCTCGTATTTTCTAAATG 58.296 37.037 0.00 0.00 0.00 2.32
418 419 8.643324 AGGTAGCATCTCTCGTATTTTCTAAAT 58.357 33.333 0.00 0.00 0.00 1.40
419 420 8.008513 AGGTAGCATCTCTCGTATTTTCTAAA 57.991 34.615 0.00 0.00 0.00 1.85
420 421 7.255520 GGAGGTAGCATCTCTCGTATTTTCTAA 60.256 40.741 0.00 0.00 0.00 2.10
421 422 6.207025 GGAGGTAGCATCTCTCGTATTTTCTA 59.793 42.308 0.00 0.00 0.00 2.10
422 423 5.010213 GGAGGTAGCATCTCTCGTATTTTCT 59.990 44.000 0.00 0.00 0.00 2.52
423 424 5.221263 TGGAGGTAGCATCTCTCGTATTTTC 60.221 44.000 0.00 0.00 0.00 2.29
424 425 4.649674 TGGAGGTAGCATCTCTCGTATTTT 59.350 41.667 0.00 0.00 0.00 1.82
425 426 4.215908 TGGAGGTAGCATCTCTCGTATTT 58.784 43.478 0.00 0.00 0.00 1.40
426 427 3.833732 TGGAGGTAGCATCTCTCGTATT 58.166 45.455 0.00 0.00 0.00 1.89
427 428 3.510531 TGGAGGTAGCATCTCTCGTAT 57.489 47.619 0.00 0.00 0.00 3.06
428 429 3.073209 AGATGGAGGTAGCATCTCTCGTA 59.927 47.826 0.00 0.00 30.63 3.43
429 430 2.158534 AGATGGAGGTAGCATCTCTCGT 60.159 50.000 0.00 0.00 30.63 4.18
430 431 2.513753 AGATGGAGGTAGCATCTCTCG 58.486 52.381 0.00 0.00 30.63 4.04
431 432 6.412362 TTTTAGATGGAGGTAGCATCTCTC 57.588 41.667 0.00 0.00 37.01 3.20
432 433 6.613271 TCTTTTTAGATGGAGGTAGCATCTCT 59.387 38.462 0.00 0.00 37.01 3.10
433 434 6.821388 TCTTTTTAGATGGAGGTAGCATCTC 58.179 40.000 0.00 0.00 37.01 2.75
434 435 6.814954 TCTTTTTAGATGGAGGTAGCATCT 57.185 37.500 0.00 0.00 38.91 2.90
435 436 7.865706 TTTCTTTTTAGATGGAGGTAGCATC 57.134 36.000 0.00 0.00 0.00 3.91
436 437 8.650143 TTTTTCTTTTTAGATGGAGGTAGCAT 57.350 30.769 0.00 0.00 0.00 3.79
505 506 4.231439 GTTGGTCGCGGTGATAAATTTTT 58.769 39.130 6.13 0.00 0.00 1.94
506 507 3.366577 GGTTGGTCGCGGTGATAAATTTT 60.367 43.478 6.13 0.00 0.00 1.82
507 508 2.162809 GGTTGGTCGCGGTGATAAATTT 59.837 45.455 6.13 0.00 0.00 1.82
508 509 1.741145 GGTTGGTCGCGGTGATAAATT 59.259 47.619 6.13 0.00 0.00 1.82
509 510 1.339247 TGGTTGGTCGCGGTGATAAAT 60.339 47.619 6.13 0.00 0.00 1.40
510 511 0.035036 TGGTTGGTCGCGGTGATAAA 59.965 50.000 6.13 0.00 0.00 1.40
511 512 0.390603 CTGGTTGGTCGCGGTGATAA 60.391 55.000 6.13 0.00 0.00 1.75
512 513 1.216977 CTGGTTGGTCGCGGTGATA 59.783 57.895 6.13 0.00 0.00 2.15
513 514 2.047274 CTGGTTGGTCGCGGTGAT 60.047 61.111 6.13 0.00 0.00 3.06
514 515 4.980805 GCTGGTTGGTCGCGGTGA 62.981 66.667 6.13 0.00 0.00 4.02
515 516 4.988598 AGCTGGTTGGTCGCGGTG 62.989 66.667 6.13 0.00 0.00 4.94
516 517 4.250305 AAGCTGGTTGGTCGCGGT 62.250 61.111 6.13 0.00 0.00 5.68
517 518 3.726517 CAAGCTGGTTGGTCGCGG 61.727 66.667 6.13 0.00 31.82 6.46
518 519 4.389576 GCAAGCTGGTTGGTCGCG 62.390 66.667 19.87 0.00 36.56 5.87
519 520 4.389576 CGCAAGCTGGTTGGTCGC 62.390 66.667 19.87 5.74 36.56 5.19
537 538 0.742505 CAACCAGCTATGCCACATGG 59.257 55.000 0.00 0.00 37.07 3.66
538 539 0.742505 CCAACCAGCTATGCCACATG 59.257 55.000 0.00 0.00 0.00 3.21
539 540 1.039233 GCCAACCAGCTATGCCACAT 61.039 55.000 0.00 0.00 0.00 3.21
540 541 1.678635 GCCAACCAGCTATGCCACA 60.679 57.895 0.00 0.00 0.00 4.17
541 542 2.418083 GGCCAACCAGCTATGCCAC 61.418 63.158 0.00 0.00 41.76 5.01
542 543 2.044053 GGCCAACCAGCTATGCCA 60.044 61.111 0.00 0.00 41.76 4.92
543 544 3.211963 CGGCCAACCAGCTATGCC 61.212 66.667 2.24 0.00 38.74 4.40
544 545 3.892581 GCGGCCAACCAGCTATGC 61.893 66.667 2.24 0.00 34.11 3.14
545 546 3.211963 GGCGGCCAACCAGCTATG 61.212 66.667 15.62 0.00 36.24 2.23
546 547 4.506255 GGGCGGCCAACCAGCTAT 62.506 66.667 25.33 0.00 36.24 2.97
550 551 3.944250 ATGAAGGGCGGCCAACCAG 62.944 63.158 31.59 0.00 34.57 4.00
551 552 3.978193 ATGAAGGGCGGCCAACCA 61.978 61.111 31.59 23.10 34.57 3.67
552 553 3.451894 CATGAAGGGCGGCCAACC 61.452 66.667 31.59 18.16 0.00 3.77
553 554 4.133796 GCATGAAGGGCGGCCAAC 62.134 66.667 31.59 22.46 0.00 3.77
560 561 1.663695 TTAAGCTACGCATGAAGGGC 58.336 50.000 0.00 0.00 0.00 5.19
561 562 3.002656 CACATTAAGCTACGCATGAAGGG 59.997 47.826 0.00 0.00 0.00 3.95
562 563 3.623060 ACACATTAAGCTACGCATGAAGG 59.377 43.478 0.00 0.00 0.00 3.46
563 564 4.864916 ACACATTAAGCTACGCATGAAG 57.135 40.909 0.00 0.00 0.00 3.02
564 565 5.621197 AAACACATTAAGCTACGCATGAA 57.379 34.783 0.00 0.00 0.00 2.57
565 566 6.729391 TTAAACACATTAAGCTACGCATGA 57.271 33.333 0.00 0.00 0.00 3.07
566 567 8.943925 GTTATTAAACACATTAAGCTACGCATG 58.056 33.333 0.00 0.00 36.94 4.06
567 568 7.849026 CGTTATTAAACACATTAAGCTACGCAT 59.151 33.333 0.00 0.00 36.94 4.73
568 569 7.174746 CGTTATTAAACACATTAAGCTACGCA 58.825 34.615 0.00 0.00 36.94 5.24
569 570 6.626095 CCGTTATTAAACACATTAAGCTACGC 59.374 38.462 0.00 0.00 36.94 4.42
570 571 7.633281 CACCGTTATTAAACACATTAAGCTACG 59.367 37.037 0.00 0.00 36.94 3.51
571 572 8.658609 TCACCGTTATTAAACACATTAAGCTAC 58.341 33.333 0.00 0.00 36.94 3.58
572 573 8.658609 GTCACCGTTATTAAACACATTAAGCTA 58.341 33.333 0.00 0.00 36.94 3.32
573 574 7.361457 GGTCACCGTTATTAAACACATTAAGCT 60.361 37.037 0.00 0.00 36.94 3.74
574 575 6.744082 GGTCACCGTTATTAAACACATTAAGC 59.256 38.462 0.00 0.00 36.94 3.09
575 576 7.094720 TGGGTCACCGTTATTAAACACATTAAG 60.095 37.037 0.00 0.00 40.75 1.85
576 577 6.713903 TGGGTCACCGTTATTAAACACATTAA 59.286 34.615 0.00 0.00 40.75 1.40
577 578 6.149142 GTGGGTCACCGTTATTAAACACATTA 59.851 38.462 0.00 0.00 40.75 1.90
578 579 5.048573 GTGGGTCACCGTTATTAAACACATT 60.049 40.000 0.00 0.00 40.75 2.71
579 580 4.456566 GTGGGTCACCGTTATTAAACACAT 59.543 41.667 0.00 0.00 40.75 3.21
580 581 3.814283 GTGGGTCACCGTTATTAAACACA 59.186 43.478 0.00 0.00 40.75 3.72
581 582 3.120580 CGTGGGTCACCGTTATTAAACAC 60.121 47.826 0.00 0.00 40.75 3.32
582 583 3.065655 CGTGGGTCACCGTTATTAAACA 58.934 45.455 0.00 0.00 40.75 2.83
583 584 3.123453 GTCGTGGGTCACCGTTATTAAAC 59.877 47.826 0.00 0.00 40.75 2.01
584 585 3.324993 GTCGTGGGTCACCGTTATTAAA 58.675 45.455 0.00 0.00 40.75 1.52
585 586 2.670789 CGTCGTGGGTCACCGTTATTAA 60.671 50.000 0.00 0.00 40.75 1.40
586 587 1.135431 CGTCGTGGGTCACCGTTATTA 60.135 52.381 0.00 0.00 40.75 0.98
587 588 0.388907 CGTCGTGGGTCACCGTTATT 60.389 55.000 0.00 0.00 40.75 1.40
588 589 1.213537 CGTCGTGGGTCACCGTTAT 59.786 57.895 0.00 0.00 40.75 1.89
589 590 2.644418 CGTCGTGGGTCACCGTTA 59.356 61.111 0.00 0.00 40.75 3.18
590 591 4.289245 CCGTCGTGGGTCACCGTT 62.289 66.667 0.00 0.00 40.75 4.44
592 593 2.918345 TTACCGTCGTGGGTCACCG 61.918 63.158 3.47 0.00 44.64 4.94
593 594 1.373371 GTTACCGTCGTGGGTCACC 60.373 63.158 3.47 0.00 44.64 4.02
594 595 0.665369 CTGTTACCGTCGTGGGTCAC 60.665 60.000 3.47 4.57 44.64 3.67
595 596 1.661480 CTGTTACCGTCGTGGGTCA 59.339 57.895 3.47 0.00 44.64 4.02
596 597 1.735559 GCTGTTACCGTCGTGGGTC 60.736 63.158 3.47 0.00 44.64 4.46
608 609 1.876416 GCCGTCTTGGTCTTGCTGTTA 60.876 52.381 0.00 0.00 41.21 2.41
609 610 1.166531 GCCGTCTTGGTCTTGCTGTT 61.167 55.000 0.00 0.00 41.21 3.16
676 677 1.607148 GAACCCAAAAGACCGAACCTG 59.393 52.381 0.00 0.00 0.00 4.00
717 718 2.419673 TGGTGTGAGCATAATTCTTGCG 59.580 45.455 7.44 0.00 44.82 4.85
726 727 2.412870 CGTTTGAGTGGTGTGAGCATA 58.587 47.619 0.00 0.00 0.00 3.14
735 736 3.335534 GACGCGCGTTTGAGTGGT 61.336 61.111 38.03 10.76 0.00 4.16
749 750 5.984627 TCAACATGTATTGTTTGACTGACG 58.015 37.500 0.00 0.00 46.51 4.35
771 772 8.795513 GGACAGAGGGAGTAGTATTTAGTTATC 58.204 40.741 0.00 0.00 0.00 1.75
772 773 7.729431 GGGACAGAGGGAGTAGTATTTAGTTAT 59.271 40.741 0.00 0.00 0.00 1.89
773 774 7.065504 GGGACAGAGGGAGTAGTATTTAGTTA 58.934 42.308 0.00 0.00 0.00 2.24
774 775 5.898397 GGGACAGAGGGAGTAGTATTTAGTT 59.102 44.000 0.00 0.00 0.00 2.24
775 776 5.043582 TGGGACAGAGGGAGTAGTATTTAGT 60.044 44.000 0.00 0.00 0.00 2.24
776 777 5.455872 TGGGACAGAGGGAGTAGTATTTAG 58.544 45.833 0.00 0.00 0.00 1.85
777 778 5.476950 TGGGACAGAGGGAGTAGTATTTA 57.523 43.478 0.00 0.00 0.00 1.40
778 779 4.348020 TGGGACAGAGGGAGTAGTATTT 57.652 45.455 0.00 0.00 0.00 1.40
833 834 9.955208 TCGTCTCATAATATAAGAGCGTTTTTA 57.045 29.630 0.00 0.00 33.70 1.52
834 835 8.867112 TCGTCTCATAATATAAGAGCGTTTTT 57.133 30.769 0.00 0.00 33.70 1.94
835 836 8.867112 TTCGTCTCATAATATAAGAGCGTTTT 57.133 30.769 0.00 0.00 33.70 2.43
836 837 7.595502 CCTTCGTCTCATAATATAAGAGCGTTT 59.404 37.037 0.00 0.00 33.70 3.60
837 838 7.085116 CCTTCGTCTCATAATATAAGAGCGTT 58.915 38.462 0.00 0.00 33.70 4.84
838 839 6.349445 CCCTTCGTCTCATAATATAAGAGCGT 60.349 42.308 0.00 0.00 33.70 5.07
839 840 6.030849 CCCTTCGTCTCATAATATAAGAGCG 58.969 44.000 0.00 0.00 33.46 5.03
840 841 7.094118 ACTCCCTTCGTCTCATAATATAAGAGC 60.094 40.741 0.00 0.00 0.00 4.09
841 842 8.343168 ACTCCCTTCGTCTCATAATATAAGAG 57.657 38.462 0.00 0.00 0.00 2.85
842 843 9.228949 GTACTCCCTTCGTCTCATAATATAAGA 57.771 37.037 0.00 0.00 0.00 2.10
843 844 9.011095 TGTACTCCCTTCGTCTCATAATATAAG 57.989 37.037 0.00 0.00 0.00 1.73
844 845 8.929260 TGTACTCCCTTCGTCTCATAATATAA 57.071 34.615 0.00 0.00 0.00 0.98
846 847 9.179909 CTATGTACTCCCTTCGTCTCATAATAT 57.820 37.037 0.00 0.00 0.00 1.28
847 848 8.162085 ACTATGTACTCCCTTCGTCTCATAATA 58.838 37.037 0.00 0.00 0.00 0.98
848 849 7.005296 ACTATGTACTCCCTTCGTCTCATAAT 58.995 38.462 0.00 0.00 0.00 1.28
849 850 6.363065 ACTATGTACTCCCTTCGTCTCATAA 58.637 40.000 0.00 0.00 0.00 1.90
850 851 5.938279 ACTATGTACTCCCTTCGTCTCATA 58.062 41.667 0.00 0.00 0.00 2.15
851 852 4.794334 ACTATGTACTCCCTTCGTCTCAT 58.206 43.478 0.00 0.00 0.00 2.90
852 853 4.232188 ACTATGTACTCCCTTCGTCTCA 57.768 45.455 0.00 0.00 0.00 3.27
853 854 4.514816 GGTACTATGTACTCCCTTCGTCTC 59.485 50.000 7.64 0.00 0.00 3.36
854 855 4.165758 AGGTACTATGTACTCCCTTCGTCT 59.834 45.833 7.64 0.00 36.02 4.18
855 856 4.459330 AGGTACTATGTACTCCCTTCGTC 58.541 47.826 7.64 0.00 36.02 4.20
856 857 4.516652 AGGTACTATGTACTCCCTTCGT 57.483 45.455 7.64 0.00 36.02 3.85
857 858 4.277921 GGAAGGTACTATGTACTCCCTTCG 59.722 50.000 14.11 0.00 45.68 3.79
858 859 5.206587 TGGAAGGTACTATGTACTCCCTTC 58.793 45.833 13.00 13.00 44.58 3.46
859 860 5.209659 CTGGAAGGTACTATGTACTCCCTT 58.790 45.833 11.23 0.00 38.49 3.95
860 861 4.805744 CTGGAAGGTACTATGTACTCCCT 58.194 47.826 11.23 0.00 38.49 4.20
861 862 3.321396 GCTGGAAGGTACTATGTACTCCC 59.679 52.174 11.23 8.89 38.49 4.30
862 863 3.958798 TGCTGGAAGGTACTATGTACTCC 59.041 47.826 7.64 8.05 38.49 3.85
863 864 4.401519 TGTGCTGGAAGGTACTATGTACTC 59.598 45.833 7.64 0.00 38.49 2.59
864 865 4.350245 TGTGCTGGAAGGTACTATGTACT 58.650 43.478 7.64 0.00 38.49 2.73
865 866 4.730949 TGTGCTGGAAGGTACTATGTAC 57.269 45.455 0.00 0.00 38.49 2.90
876 877 2.118313 TCATGGTGATGTGCTGGAAG 57.882 50.000 0.00 0.00 0.00 3.46
878 879 2.291089 ACATTCATGGTGATGTGCTGGA 60.291 45.455 8.74 0.00 0.00 3.86
903 904 2.567615 ACCGAGTTGCTCCTAAATCAGT 59.432 45.455 0.00 0.00 0.00 3.41
956 969 2.536365 GCACAAGATGGTTGATGCATG 58.464 47.619 2.46 0.00 33.27 4.06
957 970 1.479323 GGCACAAGATGGTTGATGCAT 59.521 47.619 0.00 0.00 34.73 3.96
958 971 0.889994 GGCACAAGATGGTTGATGCA 59.110 50.000 0.00 0.00 34.73 3.96
959 972 0.889994 TGGCACAAGATGGTTGATGC 59.110 50.000 0.00 0.00 31.92 3.91
967 980 1.140161 CGGGCAATGGCACAAGATG 59.860 57.895 9.51 0.00 46.55 2.90
979 992 0.248289 GAGTAGCTTACACCGGGCAA 59.752 55.000 6.32 0.00 0.00 4.52
996 1014 3.519579 GATGATAGCCATGTCCATCGAG 58.480 50.000 0.00 0.00 35.17 4.04
1015 1033 2.975075 CAGGAGGAGAAGGATGAGGAT 58.025 52.381 0.00 0.00 0.00 3.24
1107 1146 0.118144 AGGAGAGGAGCAGGAGGTTT 59.882 55.000 0.00 0.00 0.00 3.27
1158 1197 2.579201 GTGGCGAAGAGGCTGCTA 59.421 61.111 0.00 0.00 46.88 3.49
1188 1227 1.037579 AGACGATGTCCGGAGCATCA 61.038 55.000 29.78 17.64 43.93 3.07
1235 1274 3.130160 AGTCGGAGGCGTCGGTAC 61.130 66.667 12.85 9.97 36.95 3.34
1236 1275 3.129502 CAGTCGGAGGCGTCGGTA 61.130 66.667 12.85 0.00 36.95 4.02
1279 1318 0.529337 TAGCTCTGCTGCGCATCTTC 60.529 55.000 12.24 0.86 40.10 2.87
1298 1337 0.835276 GGCCTCCTTATTGTACGGGT 59.165 55.000 0.00 0.00 0.00 5.28
1314 1353 1.876156 GCATCATAGTACAAGCTGGCC 59.124 52.381 0.00 0.00 0.00 5.36
1408 1447 2.105821 TGAAGTTGAGGTTGTTCCGGAT 59.894 45.455 4.15 0.00 41.99 4.18
1476 1539 0.832135 TGGTGAACCTCCTCGAGCTT 60.832 55.000 6.99 0.00 36.82 3.74
1568 1631 3.973516 AAGCCGTGCAGTCGTCGA 61.974 61.111 0.00 0.00 0.00 4.20
1650 2188 0.902984 TCATGCTACACCGTGTCCCT 60.903 55.000 7.63 0.00 0.00 4.20
1829 2427 0.868406 GACAGGGTGAGAAGTTTGCG 59.132 55.000 0.00 0.00 0.00 4.85
1861 2459 1.134729 GCCATTTCGCCATGTCCAATT 60.135 47.619 0.00 0.00 0.00 2.32
1862 2460 0.461135 GCCATTTCGCCATGTCCAAT 59.539 50.000 0.00 0.00 0.00 3.16
1956 4393 5.966742 TTACTAGCTGTATGCATCTCGAT 57.033 39.130 0.19 0.00 45.94 3.59
2063 4543 3.243002 GCTGCCATGAAAGAGAATGTAGC 60.243 47.826 0.00 0.00 0.00 3.58
2071 4551 4.639310 AGTAAATCAGCTGCCATGAAAGAG 59.361 41.667 9.47 0.00 0.00 2.85
2286 4970 5.773176 ACCTTTGAACCGTTCCAATTCTAAT 59.227 36.000 8.80 0.00 0.00 1.73
2294 4978 1.210967 AGTGACCTTTGAACCGTTCCA 59.789 47.619 8.80 0.00 0.00 3.53
2330 5014 9.586150 GATCGCACATATATTTGACAAAGTTAG 57.414 33.333 6.77 0.00 0.00 2.34
2332 5016 7.066887 TGGATCGCACATATATTTGACAAAGTT 59.933 33.333 6.77 0.00 0.00 2.66
2333 5017 6.542005 TGGATCGCACATATATTTGACAAAGT 59.458 34.615 6.77 0.76 0.00 2.66
2350 5034 5.392919 CCTGACAAATTAAACATGGATCGCA 60.393 40.000 0.00 0.00 0.00 5.10
2351 5035 5.036737 CCTGACAAATTAAACATGGATCGC 58.963 41.667 0.00 0.00 0.00 4.58
2385 5095 6.716934 TTTTGCCAAGTGGTAGACAATAAA 57.283 33.333 0.00 0.00 37.57 1.40
2547 5615 9.539825 AGATAAAGCATAGAAGTATTGACAGTG 57.460 33.333 0.00 0.00 0.00 3.66
2742 5821 0.105964 TGGCAGCCTGGTGGTTTAAA 60.106 50.000 14.15 0.00 35.27 1.52
2749 5828 1.001020 TATTGGTGGCAGCCTGGTG 60.001 57.895 14.15 0.00 0.00 4.17
2982 6070 4.207165 TGGCCAGCCAATCTTAGATTTAC 58.793 43.478 9.42 0.59 44.12 2.01
3013 6102 2.248140 CGCACACGCACGAATGTT 59.752 55.556 0.00 0.00 38.40 2.71
3098 6481 7.707893 GGATTACAAGTCATCCATTGGAAAATG 59.292 37.037 9.98 3.90 39.16 2.32
3803 7634 8.868916 TGAAATGAGTTAAAAGCACAAGAAAAC 58.131 29.630 0.00 0.00 0.00 2.43
3817 7648 8.486210 AGACATATAGCCACTGAAATGAGTTAA 58.514 33.333 0.00 0.00 0.00 2.01
3834 7665 5.592282 AGATGCATACTCCGGAGACATATAG 59.408 44.000 37.69 18.76 0.00 1.31
4054 8043 9.216117 TGAGAAAGTATCTTCATCATATGCATG 57.784 33.333 10.16 3.59 38.96 4.06
4238 8227 5.150683 GCTGTTTAACATTGCAACGACATA 58.849 37.500 0.00 0.00 0.00 2.29
4423 8432 9.787435 TGTAAAACTTAGACACCACTATGAATT 57.213 29.630 0.00 0.00 0.00 2.17
4572 8617 6.238103 CCGTGTATGATGTGATGTTTTCTACC 60.238 42.308 0.00 0.00 0.00 3.18
4599 8644 3.118811 GCCATAAGCAATGCAGGGTTTTA 60.119 43.478 8.35 0.00 42.97 1.52
4703 8758 4.029809 GGTGGGGGTGACGAAGGG 62.030 72.222 0.00 0.00 0.00 3.95
4722 8780 2.756283 AGGAAGGCGAGGAGGACG 60.756 66.667 0.00 0.00 0.00 4.79
4756 8814 0.039764 TGAGGAAGAAGGCGAGGAGA 59.960 55.000 0.00 0.00 0.00 3.71
4769 8827 3.706373 GCTCGGTGGGCTGAGGAA 61.706 66.667 5.70 0.00 45.83 3.36
4775 8833 4.457496 CGATGTGCTCGGTGGGCT 62.457 66.667 0.00 0.00 43.82 5.19
4780 8838 1.679305 AGGACTCGATGTGCTCGGT 60.679 57.895 3.81 0.00 44.20 4.69
4795 8853 4.082523 CGCGGCAAAGGAGGAGGA 62.083 66.667 0.00 0.00 0.00 3.71
4820 8878 4.817517 TCTCAAAAACCCTAAGTAGCGAG 58.182 43.478 0.00 0.00 0.00 5.03
4822 8880 4.753107 TGTTCTCAAAAACCCTAAGTAGCG 59.247 41.667 0.00 0.00 0.00 4.26
4823 8881 6.819397 ATGTTCTCAAAAACCCTAAGTAGC 57.181 37.500 0.00 0.00 0.00 3.58
4837 8895 4.397420 ACAACCACTGCATATGTTCTCAA 58.603 39.130 4.29 0.00 0.00 3.02
4838 8896 4.002982 GACAACCACTGCATATGTTCTCA 58.997 43.478 4.29 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.