Multiple sequence alignment - TraesCS3D01G500600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G500600 chr3D 100.000 7325 0 0 781 8105 589764133 589756809 0.000000e+00 13527.0
1 TraesCS3D01G500600 chr3D 100.000 440 0 0 1 440 589764913 589764474 0.000000e+00 813.0
2 TraesCS3D01G500600 chr3D 78.457 376 58 14 3721 4094 593676503 593676149 2.940000e-54 224.0
3 TraesCS3D01G500600 chr3D 89.286 140 13 2 5639 5776 40012208 40012069 3.010000e-39 174.0
4 TraesCS3D01G500600 chr3D 95.238 105 3 2 3531 3634 589761340 589761237 1.810000e-36 165.0
5 TraesCS3D01G500600 chr3D 95.238 105 3 2 3574 3677 589761383 589761280 1.810000e-36 165.0
6 TraesCS3D01G500600 chr3D 95.652 69 2 1 3634 3702 360634039 360634106 8.600000e-20 110.0
7 TraesCS3D01G500600 chr3D 88.764 89 8 2 3618 3705 39318277 39318190 3.090000e-19 108.0
8 TraesCS3D01G500600 chr3D 88.506 87 8 2 5874 5959 437189796 437189881 4.000000e-18 104.0
9 TraesCS3D01G500600 chr3D 75.188 266 28 19 6934 7181 590048540 590048785 3.120000e-14 91.6
10 TraesCS3D01G500600 chr3A 96.109 2133 58 10 3774 5889 719642934 719640810 0.000000e+00 3456.0
11 TraesCS3D01G500600 chr3A 92.756 1974 69 31 5970 7919 719640815 719638892 0.000000e+00 2785.0
12 TraesCS3D01G500600 chr3A 92.271 1656 70 19 2008 3626 719644744 719643110 0.000000e+00 2296.0
13 TraesCS3D01G500600 chr3A 86.547 669 32 21 815 1471 719646281 719645659 0.000000e+00 684.0
14 TraesCS3D01G500600 chr3A 88.391 379 21 7 1540 1902 719645557 719645186 1.250000e-117 435.0
15 TraesCS3D01G500600 chr3A 84.358 358 40 7 83 440 719646751 719646410 3.620000e-88 337.0
16 TraesCS3D01G500600 chr3A 91.981 212 16 1 3574 3785 719643205 719642995 6.150000e-76 296.0
17 TraesCS3D01G500600 chr3A 86.458 192 16 5 7917 8105 719638863 719638679 1.380000e-47 202.0
18 TraesCS3D01G500600 chr3A 89.928 139 12 2 5640 5776 51474557 51474419 2.320000e-40 178.0
19 TraesCS3D01G500600 chr3A 89.024 82 8 1 3626 3707 599863887 599863807 5.180000e-17 100.0
20 TraesCS3D01G500600 chr3A 90.667 75 6 1 3516 3590 599863909 599863836 1.860000e-16 99.0
21 TraesCS3D01G500600 chr3A 82.203 118 10 5 3579 3696 353182823 353182717 3.120000e-14 91.6
22 TraesCS3D01G500600 chr3A 80.357 112 16 6 4544 4651 713563998 713564107 6.740000e-11 80.5
23 TraesCS3D01G500600 chr3A 100.000 30 0 0 7152 7181 719812601 719812630 1.000000e-03 56.5
24 TraesCS3D01G500600 chr3B 93.150 1416 73 14 2111 3514 788227200 788225797 0.000000e+00 2056.0
25 TraesCS3D01G500600 chr3B 89.871 1471 121 13 3659 5104 788225789 788224322 0.000000e+00 1866.0
26 TraesCS3D01G500600 chr3B 87.370 1251 65 35 6686 7888 788223445 788222240 0.000000e+00 1349.0
27 TraesCS3D01G500600 chr3B 85.654 1178 64 44 782 1902 788228765 788227636 0.000000e+00 1142.0
28 TraesCS3D01G500600 chr3B 84.665 463 42 14 6170 6623 788223921 788223479 1.250000e-117 435.0
29 TraesCS3D01G500600 chr3B 92.593 81 5 1 342 421 788228915 788228835 1.850000e-21 115.0
30 TraesCS3D01G500600 chr3B 92.308 78 4 2 1 77 788229183 788229107 8.600000e-20 110.0
31 TraesCS3D01G500600 chr3B 84.821 112 8 6 1898 2002 788227584 788227475 4.000000e-18 104.0
32 TraesCS3D01G500600 chr3B 94.118 68 2 2 3524 3590 672774742 672774676 1.440000e-17 102.0
33 TraesCS3D01G500600 chr6D 83.740 123 20 0 3806 3928 159781795 159781673 5.140000e-22 117.0
34 TraesCS3D01G500600 chr6D 90.000 90 7 2 5883 5971 39676411 39676499 1.850000e-21 115.0
35 TraesCS3D01G500600 chr6D 94.444 72 4 0 3626 3697 24554593 24554522 2.390000e-20 111.0
36 TraesCS3D01G500600 chr2A 88.776 98 7 4 5879 5975 115415489 115415583 5.140000e-22 117.0
37 TraesCS3D01G500600 chr5A 87.755 98 10 2 5875 5972 134085964 134086059 6.650000e-21 113.0
38 TraesCS3D01G500600 chr2B 90.698 86 7 1 5886 5971 677805611 677805527 6.650000e-21 113.0
39 TraesCS3D01G500600 chr2B 89.535 86 8 1 5886 5971 794694189 794694273 3.090000e-19 108.0
40 TraesCS3D01G500600 chr5B 87.629 97 11 1 5876 5971 704725029 704725125 2.390000e-20 111.0
41 TraesCS3D01G500600 chr6A 85.047 107 16 0 3822 3928 218865943 218865837 8.600000e-20 110.0
42 TraesCS3D01G500600 chr6A 91.176 68 6 0 3523 3590 420829929 420829862 8.660000e-15 93.5
43 TraesCS3D01G500600 chr4B 88.636 88 9 1 5886 5973 806779 806693 1.110000e-18 106.0
44 TraesCS3D01G500600 chr4A 85.714 98 12 2 5876 5971 611027422 611027519 1.440000e-17 102.0
45 TraesCS3D01G500600 chr4A 94.030 67 3 1 3524 3590 626981492 626981557 5.180000e-17 100.0
46 TraesCS3D01G500600 chr7D 81.395 129 18 2 4514 4642 593646932 593646810 5.180000e-17 100.0
47 TraesCS3D01G500600 chr7D 81.818 121 15 7 3583 3697 75054787 75054906 2.410000e-15 95.3
48 TraesCS3D01G500600 chr7D 80.000 120 14 10 3522 3634 75054770 75054886 6.740000e-11 80.5
49 TraesCS3D01G500600 chr2D 85.417 96 14 0 4320 4415 110243232 110243137 5.180000e-17 100.0
50 TraesCS3D01G500600 chr4D 83.036 112 14 4 3582 3693 489181722 489181828 6.700000e-16 97.1
51 TraesCS3D01G500600 chr4D 81.905 105 13 5 3530 3634 489181714 489181812 5.210000e-12 84.2
52 TraesCS3D01G500600 chr6B 86.747 83 8 3 3509 3590 203685177 203685257 1.120000e-13 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G500600 chr3D 589756809 589764913 8104 True 3667.500 13527 97.619000 1 8105 4 chr3D.!!$R4 8104
1 TraesCS3D01G500600 chr3A 719638679 719646751 8072 True 1311.375 3456 89.858875 83 8105 8 chr3A.!!$R4 8022
2 TraesCS3D01G500600 chr3B 788222240 788229183 6943 True 897.125 2056 88.804000 1 7888 8 chr3B.!!$R2 7887

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
58 59 0.029700 GCACACAACACCCCGTTTAC 59.970 55.0 0.00 0.0 34.86 2.01 F
1504 1544 0.321346 TTGAGCGATTGACCAGAGCA 59.679 50.0 0.00 0.0 0.00 4.26 F
2106 2571 0.608035 GATTTGGGAGGTTGTGCGGA 60.608 55.0 0.00 0.0 0.00 5.54 F
2939 3415 0.746063 TCTTGGTTTGCAAGCACCTG 59.254 50.0 18.74 12.5 38.84 4.00 F
4141 4723 0.171903 GCATGCTTACTGGCAACTGG 59.828 55.0 11.37 0.0 45.68 4.00 F
5193 5801 2.546373 CCAAGTGCCATCTTTGTGTTGG 60.546 50.0 0.00 0.0 38.30 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1950 2149 0.032540 CAGGTTTCCAAACTGCTGCC 59.967 55.000 0.00 0.00 38.89 4.85 R
2375 2846 2.105006 AGACAACCACATAGCTGCAG 57.895 50.000 10.11 10.11 0.00 4.41 R
3741 4251 2.884012 TCATGCACAATCGTTCCACTTT 59.116 40.909 0.00 0.00 0.00 2.66 R
4517 5099 2.942752 GCATGCACCAGGAAGATCAAGA 60.943 50.000 14.21 0.00 0.00 3.02 R
5426 6035 0.321564 GCACTGTGACATGGCCACTA 60.322 55.000 8.16 0.00 35.66 2.74 R
7140 7923 0.039472 TTCAAGCCCAGGCATGCTTA 59.961 50.000 18.92 0.00 45.59 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.377628 TTTCTGGCACCGAAGCTCGT 62.378 55.000 0.00 0.00 38.40 4.18
44 45 2.974165 CTTCAAGTTCACGAAGCACAC 58.026 47.619 0.00 0.00 32.84 3.82
45 46 2.017138 TCAAGTTCACGAAGCACACA 57.983 45.000 0.00 0.00 0.00 3.72
46 47 2.351455 TCAAGTTCACGAAGCACACAA 58.649 42.857 0.00 0.00 0.00 3.33
47 48 2.095213 TCAAGTTCACGAAGCACACAAC 59.905 45.455 0.00 0.00 0.00 3.32
48 49 1.732941 AGTTCACGAAGCACACAACA 58.267 45.000 0.00 0.00 0.00 3.33
49 50 1.396996 AGTTCACGAAGCACACAACAC 59.603 47.619 0.00 0.00 0.00 3.32
50 51 0.730265 TTCACGAAGCACACAACACC 59.270 50.000 0.00 0.00 0.00 4.16
51 52 1.092921 TCACGAAGCACACAACACCC 61.093 55.000 0.00 0.00 0.00 4.61
52 53 1.822186 ACGAAGCACACAACACCCC 60.822 57.895 0.00 0.00 0.00 4.95
53 54 2.892334 CGAAGCACACAACACCCCG 61.892 63.158 0.00 0.00 0.00 5.73
54 55 1.822186 GAAGCACACAACACCCCGT 60.822 57.895 0.00 0.00 0.00 5.28
55 56 1.379309 AAGCACACAACACCCCGTT 60.379 52.632 0.00 0.00 38.83 4.44
56 57 0.968393 AAGCACACAACACCCCGTTT 60.968 50.000 0.00 0.00 34.86 3.60
57 58 0.107116 AGCACACAACACCCCGTTTA 60.107 50.000 0.00 0.00 34.86 2.01
58 59 0.029700 GCACACAACACCCCGTTTAC 59.970 55.000 0.00 0.00 34.86 2.01
59 60 1.380524 CACACAACACCCCGTTTACA 58.619 50.000 0.00 0.00 34.86 2.41
60 61 1.950909 CACACAACACCCCGTTTACAT 59.049 47.619 0.00 0.00 34.86 2.29
61 62 1.950909 ACACAACACCCCGTTTACATG 59.049 47.619 0.00 0.00 34.86 3.21
62 63 1.268352 CACAACACCCCGTTTACATGG 59.732 52.381 0.00 0.00 34.86 3.66
67 68 3.493213 CCCGTTTACATGGGCGAC 58.507 61.111 0.00 0.00 42.81 5.19
68 69 1.376166 CCCGTTTACATGGGCGACA 60.376 57.895 0.00 0.00 42.81 4.35
69 70 1.641123 CCCGTTTACATGGGCGACAC 61.641 60.000 0.00 0.00 42.81 3.67
70 71 0.672401 CCGTTTACATGGGCGACACT 60.672 55.000 0.00 0.00 0.00 3.55
71 72 1.153353 CGTTTACATGGGCGACACTT 58.847 50.000 0.00 0.00 0.00 3.16
72 73 1.533731 CGTTTACATGGGCGACACTTT 59.466 47.619 0.00 0.00 0.00 2.66
73 74 2.031508 CGTTTACATGGGCGACACTTTT 60.032 45.455 0.00 0.00 0.00 2.27
74 75 3.305110 GTTTACATGGGCGACACTTTTG 58.695 45.455 0.00 0.00 0.00 2.44
75 76 0.878416 TACATGGGCGACACTTTTGC 59.122 50.000 0.00 0.00 0.00 3.68
76 77 1.442520 CATGGGCGACACTTTTGCG 60.443 57.895 0.00 0.00 35.04 4.85
77 78 3.267597 ATGGGCGACACTTTTGCGC 62.268 57.895 0.00 0.00 45.94 6.09
95 96 1.755008 CCACACAACACCCCCGTTT 60.755 57.895 0.00 0.00 0.00 3.60
97 98 0.948678 CACACAACACCCCCGTTTAG 59.051 55.000 0.00 0.00 0.00 1.85
99 100 1.422402 ACACAACACCCCCGTTTAGAT 59.578 47.619 0.00 0.00 0.00 1.98
112 113 2.482721 CGTTTAGATGGGCGACACTTTT 59.517 45.455 0.00 0.00 0.00 2.27
122 123 1.081840 GACACTTTTGCGCTGCTCC 60.082 57.895 9.73 0.00 0.00 4.70
153 154 2.813179 CGGCCGCAAGCAGTATCAC 61.813 63.158 14.67 0.00 46.50 3.06
188 189 4.183686 CCGCCATGCCTCGCAAAG 62.184 66.667 0.00 0.00 43.62 2.77
191 192 3.142838 CCATGCCTCGCAAAGGGG 61.143 66.667 4.41 0.00 46.32 4.79
192 193 3.142838 CATGCCTCGCAAAGGGGG 61.143 66.667 4.41 0.00 46.32 5.40
220 221 4.293671 CCGCCACCCCCTTTCCAA 62.294 66.667 0.00 0.00 0.00 3.53
268 275 1.874019 CAATGGCGACGAGACGAGG 60.874 63.158 0.00 0.00 35.09 4.63
269 276 3.064987 AATGGCGACGAGACGAGGG 62.065 63.158 0.00 0.00 35.09 4.30
275 282 1.378250 GACGAGACGAGGGGAAGGA 60.378 63.158 0.00 0.00 0.00 3.36
310 318 1.609555 CCCTCTCGATCTAGGGTTTCG 59.390 57.143 16.08 0.00 46.45 3.46
331 339 3.992641 TGTCGCCAGGAGGAGGGA 61.993 66.667 0.00 0.00 36.89 4.20
335 343 2.366570 GCCAGGAGGAGGGAGACT 59.633 66.667 0.00 0.00 36.89 3.24
337 345 1.334384 GCCAGGAGGAGGGAGACTTC 61.334 65.000 0.00 0.00 36.89 3.01
338 346 1.040339 CCAGGAGGAGGGAGACTTCG 61.040 65.000 0.00 0.00 37.30 3.79
339 347 1.040339 CAGGAGGAGGGAGACTTCGG 61.040 65.000 0.00 0.00 37.30 4.30
340 348 2.428085 GGAGGAGGGAGACTTCGGC 61.428 68.421 0.00 0.00 37.30 5.54
341 349 2.756283 AGGAGGGAGACTTCGGCG 60.756 66.667 0.00 0.00 37.30 6.46
384 392 6.985653 TCCACTCTAGGAAGGAAATCTATG 57.014 41.667 0.00 0.00 33.93 2.23
385 393 5.841237 TCCACTCTAGGAAGGAAATCTATGG 59.159 44.000 0.00 0.00 33.93 2.74
411 419 2.047844 CTCCACTCCACGTGCTGG 60.048 66.667 10.91 13.83 42.42 4.85
420 428 2.241259 CCACGTGCTGGAATTAAACG 57.759 50.000 10.91 0.00 43.95 3.60
805 813 2.039787 TGGTCCAGCCCACCGATA 59.960 61.111 0.00 0.00 36.61 2.92
900 921 0.528684 CAGCCGGACGAATCTTCCTC 60.529 60.000 5.05 0.00 0.00 3.71
901 922 1.227292 GCCGGACGAATCTTCCTCC 60.227 63.158 5.05 0.00 0.00 4.30
902 923 1.442148 CCGGACGAATCTTCCTCCC 59.558 63.158 0.00 0.00 31.25 4.30
903 924 1.043673 CCGGACGAATCTTCCTCCCT 61.044 60.000 0.00 0.00 31.25 4.20
904 925 0.386113 CGGACGAATCTTCCTCCCTC 59.614 60.000 4.24 0.00 31.25 4.30
905 926 0.753867 GGACGAATCTTCCTCCCTCC 59.246 60.000 0.00 0.00 0.00 4.30
906 927 1.689892 GGACGAATCTTCCTCCCTCCT 60.690 57.143 0.00 0.00 0.00 3.69
907 928 1.684450 GACGAATCTTCCTCCCTCCTC 59.316 57.143 0.00 0.00 0.00 3.71
908 929 1.289530 ACGAATCTTCCTCCCTCCTCT 59.710 52.381 0.00 0.00 0.00 3.69
909 930 1.960689 CGAATCTTCCTCCCTCCTCTC 59.039 57.143 0.00 0.00 0.00 3.20
910 931 1.960689 GAATCTTCCTCCCTCCTCTCG 59.039 57.143 0.00 0.00 0.00 4.04
937 958 4.563140 TCCCACCAACCACTACTAATTC 57.437 45.455 0.00 0.00 0.00 2.17
938 959 4.172807 TCCCACCAACCACTACTAATTCT 58.827 43.478 0.00 0.00 0.00 2.40
940 961 5.786457 TCCCACCAACCACTACTAATTCTTA 59.214 40.000 0.00 0.00 0.00 2.10
941 962 6.070424 TCCCACCAACCACTACTAATTCTTAG 60.070 42.308 0.00 0.00 39.18 2.18
943 964 6.817140 CCACCAACCACTACTAATTCTTAGTC 59.183 42.308 2.96 0.00 44.90 2.59
944 965 7.310485 CCACCAACCACTACTAATTCTTAGTCT 60.310 40.741 2.96 0.00 44.90 3.24
945 966 8.746530 CACCAACCACTACTAATTCTTAGTCTA 58.253 37.037 2.96 0.00 44.90 2.59
946 967 8.747471 ACCAACCACTACTAATTCTTAGTCTAC 58.253 37.037 2.96 0.00 44.90 2.59
947 968 8.968969 CCAACCACTACTAATTCTTAGTCTACT 58.031 37.037 2.96 0.00 44.90 2.57
948 969 9.790389 CAACCACTACTAATTCTTAGTCTACTG 57.210 37.037 2.96 0.00 44.90 2.74
949 970 7.998580 ACCACTACTAATTCTTAGTCTACTGC 58.001 38.462 2.96 0.00 44.90 4.40
978 999 0.671781 ACGCACATCAGAGCAGGAAC 60.672 55.000 0.00 0.00 0.00 3.62
988 1009 2.116983 GAGCAGGAACCAGAGCACCA 62.117 60.000 0.00 0.00 0.00 4.17
1453 1493 3.851128 GGTACGCCCTCTGCTCCC 61.851 72.222 0.00 0.00 38.05 4.30
1454 1494 2.760385 GTACGCCCTCTGCTCCCT 60.760 66.667 0.00 0.00 38.05 4.20
1465 1505 4.890306 GCTCCCTCCCCTCCCTCC 62.890 77.778 0.00 0.00 0.00 4.30
1471 1511 3.036959 TCCCCTCCCTCCTCCTCC 61.037 72.222 0.00 0.00 0.00 4.30
1472 1512 4.548513 CCCCTCCCTCCTCCTCCG 62.549 77.778 0.00 0.00 0.00 4.63
1475 1515 2.520741 CTCCCTCCTCCTCCGCTC 60.521 72.222 0.00 0.00 0.00 5.03
1477 1517 4.465446 CCCTCCTCCTCCGCTCCA 62.465 72.222 0.00 0.00 0.00 3.86
1479 1519 3.535962 CTCCTCCTCCGCTCCAGC 61.536 72.222 0.00 0.00 37.78 4.85
1480 1520 4.382541 TCCTCCTCCGCTCCAGCA 62.383 66.667 0.00 0.00 42.21 4.41
1481 1521 3.160047 CCTCCTCCGCTCCAGCAT 61.160 66.667 0.00 0.00 42.21 3.79
1489 1529 1.164662 CCGCTCCAGCATCCATTGAG 61.165 60.000 0.00 0.00 42.21 3.02
1490 1530 1.783031 CGCTCCAGCATCCATTGAGC 61.783 60.000 0.00 0.00 43.79 4.26
1496 1536 1.944709 CAGCATCCATTGAGCGATTGA 59.055 47.619 0.00 0.00 0.00 2.57
1497 1537 1.945394 AGCATCCATTGAGCGATTGAC 59.055 47.619 0.00 0.00 0.00 3.18
1504 1544 0.321346 TTGAGCGATTGACCAGAGCA 59.679 50.000 0.00 0.00 0.00 4.26
1545 1623 2.104331 CGATCGAGGGTGGTTCCG 59.896 66.667 10.26 0.00 37.00 4.30
1547 1625 2.683933 ATCGAGGGTGGTTCCGCT 60.684 61.111 2.41 0.00 37.00 5.52
1779 1887 3.149981 GCTGTGCTTCTTTACTTTCCCT 58.850 45.455 0.00 0.00 0.00 4.20
1781 1889 4.557496 GCTGTGCTTCTTTACTTTCCCTTG 60.557 45.833 0.00 0.00 0.00 3.61
1904 2055 2.740714 GCGACTTGCTGCCCGTAAG 61.741 63.158 0.00 0.00 41.73 2.34
1948 2147 2.418976 GGAAAAACCCGAGCACTACATC 59.581 50.000 0.00 0.00 0.00 3.06
1949 2148 1.722011 AAAACCCGAGCACTACATCG 58.278 50.000 0.00 0.00 38.65 3.84
1953 2152 2.494445 CGAGCACTACATCGGGCA 59.506 61.111 0.00 0.00 35.33 5.36
1955 2154 1.884926 GAGCACTACATCGGGCAGC 60.885 63.158 0.00 0.00 0.00 5.25
1956 2155 2.125147 GCACTACATCGGGCAGCA 60.125 61.111 0.00 0.00 0.00 4.41
1957 2156 2.176273 GCACTACATCGGGCAGCAG 61.176 63.158 0.00 0.00 0.00 4.24
1999 2203 4.163441 TCGGGAAATGATTATTGGAGCA 57.837 40.909 0.00 0.00 0.00 4.26
2002 2206 4.261322 CGGGAAATGATTATTGGAGCACAG 60.261 45.833 0.00 0.00 0.00 3.66
2003 2207 4.500375 GGGAAATGATTATTGGAGCACAGC 60.500 45.833 0.00 0.00 0.00 4.40
2004 2208 4.500375 GGAAATGATTATTGGAGCACAGCC 60.500 45.833 0.00 0.00 0.00 4.85
2006 2210 1.065491 TGATTATTGGAGCACAGCCGT 60.065 47.619 0.00 0.00 0.00 5.68
2025 2487 4.565166 GCCGTACCCAAATAAAATTGCTTC 59.435 41.667 0.00 0.00 0.00 3.86
2106 2571 0.608035 GATTTGGGAGGTTGTGCGGA 60.608 55.000 0.00 0.00 0.00 5.54
2188 2657 1.577328 GGTGTGCGGTTGGTCTCATG 61.577 60.000 0.00 0.00 0.00 3.07
2203 2672 4.336713 GGTCTCATGAGGTTTTATGCCTTC 59.663 45.833 22.42 0.00 36.29 3.46
2230 2699 7.148423 TGCTCGTTATTGCATAACCATCATATC 60.148 37.037 11.15 0.00 41.55 1.63
2264 2733 7.739477 CCATTGTTATTTTTGCACATTAACACG 59.261 33.333 10.18 6.71 33.75 4.49
2358 2829 1.931172 CTTGGACGCTAATAACACGGG 59.069 52.381 0.00 0.00 0.00 5.28
2375 2846 2.432510 ACGGGATGGATCTCTTCACTTC 59.567 50.000 0.00 0.00 0.00 3.01
2752 3228 5.069318 TCACTTTATCACCTGCAATCACAA 58.931 37.500 0.00 0.00 0.00 3.33
2939 3415 0.746063 TCTTGGTTTGCAAGCACCTG 59.254 50.000 18.74 12.50 38.84 4.00
2989 3465 4.016444 TGTAATCCATGCCAAGGAGTTTC 58.984 43.478 0.00 0.00 38.83 2.78
3085 3562 4.641396 TCGGAGATGGGCATGTAAAATAG 58.359 43.478 0.00 0.00 0.00 1.73
3241 3726 6.346838 GCTGGAACATTTGTTTTGATAACAGC 60.347 38.462 0.00 0.00 38.56 4.40
3288 3773 2.360165 GTGTCAAGATCCCAATCATGGC 59.640 50.000 0.00 0.00 46.09 4.40
3306 3791 2.961741 TGGCATGTTAGGCAAAAACTGA 59.038 40.909 0.00 0.00 41.47 3.41
3409 3896 6.164176 CGGTTCAGACCTATAAACTCTGTTT 58.836 40.000 1.33 1.33 44.20 2.83
3741 4251 5.718724 TTTGTGGCAATATTGTGATGTCA 57.281 34.783 16.61 0.00 0.00 3.58
3752 4262 3.186702 TGTGATGTCAAAGTGGAACGA 57.813 42.857 0.00 0.00 45.86 3.85
3768 4278 4.940654 TGGAACGATTGTGCATGATTAAGA 59.059 37.500 0.00 0.00 0.00 2.10
3770 4280 6.765512 TGGAACGATTGTGCATGATTAAGATA 59.234 34.615 0.00 0.00 0.00 1.98
3805 4387 9.710979 CTTTATCTGAACAAAGTTTAACACGAA 57.289 29.630 0.00 0.00 0.00 3.85
3916 4498 1.448924 TCTGCAAGCTGCTGACACT 59.551 52.632 1.35 0.00 44.54 3.55
3938 4520 5.307196 ACTGTATTGAAGGTACCAAGTCTGT 59.693 40.000 15.94 5.16 0.00 3.41
3948 4530 5.542635 AGGTACCAAGTCTGTTAATCAGTCA 59.457 40.000 15.94 0.00 43.97 3.41
3978 4560 8.350722 TGACTAATATCTGTTCTTTAGCTACCG 58.649 37.037 0.00 0.00 0.00 4.02
4038 4620 9.270640 CAGGAGATAATATTTATAGATGCTGCC 57.729 37.037 0.00 0.00 0.00 4.85
4096 4678 6.115446 TGTCACCTGGCAATAATTTCTCTAG 58.885 40.000 0.00 0.00 0.00 2.43
4097 4679 6.070251 TGTCACCTGGCAATAATTTCTCTAGA 60.070 38.462 0.00 0.00 0.00 2.43
4141 4723 0.171903 GCATGCTTACTGGCAACTGG 59.828 55.000 11.37 0.00 45.68 4.00
4354 4936 6.660949 AGGCTATTTTTATGTGTCTCTTGCTT 59.339 34.615 0.00 0.00 0.00 3.91
4464 5046 7.869429 GGGATCATTATCTGCTGGTAATTTTTG 59.131 37.037 6.39 0.00 32.29 2.44
4474 5056 7.766278 TCTGCTGGTAATTTTTGCAAAGTTTTA 59.234 29.630 12.41 8.81 33.07 1.52
4517 5099 3.574396 TGAGTTCTCTTCGGAACATCTGT 59.426 43.478 9.50 0.00 45.52 3.41
4789 5384 4.836175 TCCTAATTTTGAAAAGGACCACCC 59.164 41.667 0.00 0.00 33.18 4.61
4834 5431 9.463443 GTTGATTTATTTATTTTCTGATCCCCG 57.537 33.333 0.00 0.00 0.00 5.73
4845 5442 7.979444 TTTTCTGATCCCCGTAATGATTATC 57.021 36.000 0.00 0.00 0.00 1.75
5041 5647 7.496529 TTCAATATATCTTTGCTACACCTGC 57.503 36.000 0.00 0.00 0.00 4.85
5140 5747 8.383619 CGTCTTCTCCACTGATAAATAGTTTTG 58.616 37.037 0.00 0.00 0.00 2.44
5193 5801 2.546373 CCAAGTGCCATCTTTGTGTTGG 60.546 50.000 0.00 0.00 38.30 3.77
5379 5987 4.318760 CCACATTTCGTTAGTCATATGCGG 60.319 45.833 0.00 0.00 0.00 5.69
5387 5995 5.239087 TCGTTAGTCATATGCGGTGTACATA 59.761 40.000 0.00 0.00 34.64 2.29
5421 6030 8.871862 CACAATTTCTTGACAAATCTTTCACAA 58.128 29.630 0.00 0.00 36.20 3.33
5447 6056 1.302752 TGGCCATGTCACAGTGCTC 60.303 57.895 0.00 0.00 0.00 4.26
5448 6057 1.002868 GGCCATGTCACAGTGCTCT 60.003 57.895 0.00 0.00 0.00 4.09
5449 6058 0.250234 GGCCATGTCACAGTGCTCTA 59.750 55.000 0.00 0.00 0.00 2.43
5450 6059 1.339055 GGCCATGTCACAGTGCTCTAA 60.339 52.381 0.00 0.00 0.00 2.10
5452 6061 2.353889 GCCATGTCACAGTGCTCTAATG 59.646 50.000 0.00 0.00 0.00 1.90
5453 6062 3.603532 CCATGTCACAGTGCTCTAATGT 58.396 45.455 0.00 0.00 38.28 2.71
5462 6071 1.863454 GTGCTCTAATGTGAGGCATCG 59.137 52.381 0.00 0.00 36.67 3.84
5547 6156 3.286353 TGTGTGTCATCCAGCTTTCAAA 58.714 40.909 0.00 0.00 0.00 2.69
5566 6175 3.294038 AATCTGGATCTGGAAGCCTTG 57.706 47.619 0.00 0.00 0.00 3.61
5573 6182 4.721776 TGGATCTGGAAGCCTTGTAGTAAT 59.278 41.667 0.00 0.00 0.00 1.89
5574 6183 5.903010 TGGATCTGGAAGCCTTGTAGTAATA 59.097 40.000 0.00 0.00 0.00 0.98
5576 6185 6.706716 GGATCTGGAAGCCTTGTAGTAATAAC 59.293 42.308 0.00 0.00 0.00 1.89
5577 6186 5.985911 TCTGGAAGCCTTGTAGTAATAACC 58.014 41.667 0.00 0.00 0.00 2.85
5578 6187 5.486063 TCTGGAAGCCTTGTAGTAATAACCA 59.514 40.000 0.00 0.00 0.00 3.67
5579 6188 6.157994 TCTGGAAGCCTTGTAGTAATAACCAT 59.842 38.462 0.00 0.00 0.00 3.55
5602 6211 9.276590 CCATTATAAGCTGAGATGTTGTATTCA 57.723 33.333 0.00 0.00 0.00 2.57
5620 6229 0.588252 CACACCCTGCTTCGTTTCAG 59.412 55.000 0.00 0.00 0.00 3.02
5637 6246 6.204688 TCGTTTCAGCACACAAATAGAAAGAT 59.795 34.615 0.00 0.00 0.00 2.40
5639 6248 6.882610 TTCAGCACACAAATAGAAAGATGT 57.117 33.333 0.00 0.00 0.00 3.06
5654 6263 3.629142 AGATGTCGTTAAAGGGGGAAG 57.371 47.619 0.00 0.00 0.00 3.46
5673 6282 6.301486 GGGAAGTTTTCTCCCTTAACTGTAA 58.699 40.000 0.38 0.00 40.46 2.41
5699 6308 1.958288 AGGTAGAAGTGAGGCACCAT 58.042 50.000 0.00 0.00 34.49 3.55
5751 6360 1.595993 GCTCACGGGTCTGTGCTCTA 61.596 60.000 5.12 0.00 39.73 2.43
5760 6369 1.000506 GTCTGTGCTCTAACCAACCGA 59.999 52.381 0.00 0.00 0.00 4.69
5769 6378 0.034337 TAACCAACCGACCACTGCTC 59.966 55.000 0.00 0.00 0.00 4.26
5809 6418 6.738200 CACACAAATCACTACTTCATTAAGCG 59.262 38.462 0.00 0.00 36.05 4.68
5817 6426 3.134574 ACTTCATTAAGCGGTCCACAA 57.865 42.857 0.00 0.00 36.05 3.33
5851 6460 1.827969 CCCTTCCCTATATCTGGCTCG 59.172 57.143 0.00 0.00 0.00 5.03
5894 6503 8.773216 AGCCAGATTTTAATATATACTCCCTCC 58.227 37.037 0.00 0.00 0.00 4.30
5895 6504 7.711339 GCCAGATTTTAATATATACTCCCTCCG 59.289 40.741 0.00 0.00 0.00 4.63
5896 6505 8.759782 CCAGATTTTAATATATACTCCCTCCGT 58.240 37.037 0.00 0.00 0.00 4.69
5897 6506 9.804758 CAGATTTTAATATATACTCCCTCCGTC 57.195 37.037 0.00 0.00 0.00 4.79
5898 6507 8.979534 AGATTTTAATATATACTCCCTCCGTCC 58.020 37.037 0.00 0.00 0.00 4.79
5899 6508 7.486407 TTTTAATATATACTCCCTCCGTCCC 57.514 40.000 0.00 0.00 0.00 4.46
5900 6509 4.687262 AATATATACTCCCTCCGTCCCA 57.313 45.455 0.00 0.00 0.00 4.37
5901 6510 4.901785 ATATATACTCCCTCCGTCCCAT 57.098 45.455 0.00 0.00 0.00 4.00
5902 6511 6.351317 AATATATACTCCCTCCGTCCCATA 57.649 41.667 0.00 0.00 0.00 2.74
5903 6512 4.687262 ATATACTCCCTCCGTCCCATAA 57.313 45.455 0.00 0.00 0.00 1.90
5904 6513 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
5905 6514 4.687262 ATACTCCCTCCGTCCCATAATA 57.313 45.455 0.00 0.00 0.00 0.98
5906 6515 3.339713 ACTCCCTCCGTCCCATAATAA 57.660 47.619 0.00 0.00 0.00 1.40
5907 6516 3.660959 ACTCCCTCCGTCCCATAATAAA 58.339 45.455 0.00 0.00 0.00 1.40
5908 6517 4.042174 ACTCCCTCCGTCCCATAATAAAA 58.958 43.478 0.00 0.00 0.00 1.52
5909 6518 4.102681 ACTCCCTCCGTCCCATAATAAAAG 59.897 45.833 0.00 0.00 0.00 2.27
5910 6519 4.300345 TCCCTCCGTCCCATAATAAAAGA 58.700 43.478 0.00 0.00 0.00 2.52
5911 6520 4.911522 TCCCTCCGTCCCATAATAAAAGAT 59.088 41.667 0.00 0.00 0.00 2.40
5912 6521 5.012768 TCCCTCCGTCCCATAATAAAAGATC 59.987 44.000 0.00 0.00 0.00 2.75
5913 6522 4.929808 CCTCCGTCCCATAATAAAAGATCG 59.070 45.833 0.00 0.00 0.00 3.69
5914 6523 5.510861 CCTCCGTCCCATAATAAAAGATCGT 60.511 44.000 0.00 0.00 0.00 3.73
5915 6524 5.920903 TCCGTCCCATAATAAAAGATCGTT 58.079 37.500 0.00 0.00 0.00 3.85
5916 6525 6.350906 TCCGTCCCATAATAAAAGATCGTTT 58.649 36.000 11.40 11.40 0.00 3.60
5917 6526 6.824704 TCCGTCCCATAATAAAAGATCGTTTT 59.175 34.615 11.90 9.40 0.00 2.43
5918 6527 6.910433 CCGTCCCATAATAAAAGATCGTTTTG 59.090 38.462 11.90 4.53 0.00 2.44
5919 6528 6.413818 CGTCCCATAATAAAAGATCGTTTTGC 59.586 38.462 11.90 0.00 0.00 3.68
5920 6529 7.254852 GTCCCATAATAAAAGATCGTTTTGCA 58.745 34.615 11.90 0.00 0.00 4.08
5921 6530 7.757624 GTCCCATAATAAAAGATCGTTTTGCAA 59.242 33.333 11.90 0.00 0.00 4.08
5922 6531 7.973388 TCCCATAATAAAAGATCGTTTTGCAAG 59.027 33.333 11.90 1.33 0.00 4.01
5923 6532 7.254084 CCCATAATAAAAGATCGTTTTGCAAGC 60.254 37.037 11.90 0.00 0.00 4.01
5924 6533 7.489113 CCATAATAAAAGATCGTTTTGCAAGCT 59.511 33.333 11.90 0.00 0.00 3.74
5925 6534 9.502145 CATAATAAAAGATCGTTTTGCAAGCTA 57.498 29.630 11.90 0.00 0.00 3.32
5927 6536 8.810652 AATAAAAGATCGTTTTGCAAGCTAAA 57.189 26.923 11.90 0.00 0.00 1.85
5928 6537 8.810652 ATAAAAGATCGTTTTGCAAGCTAAAA 57.189 26.923 11.90 1.77 0.00 1.52
5929 6538 6.510746 AAAGATCGTTTTGCAAGCTAAAAC 57.489 33.333 11.65 11.65 41.97 2.43
5930 6539 5.181690 AGATCGTTTTGCAAGCTAAAACA 57.818 34.783 18.63 9.57 44.28 2.83
5931 6540 5.215160 AGATCGTTTTGCAAGCTAAAACAG 58.785 37.500 18.63 12.95 44.28 3.16
5947 6556 7.566858 CTAAAACAGCTTGCAAAACGATATT 57.433 32.000 0.00 0.00 0.00 1.28
5948 6557 5.827568 AAACAGCTTGCAAAACGATATTG 57.172 34.783 0.00 0.00 0.00 1.90
5949 6558 4.503741 ACAGCTTGCAAAACGATATTGT 57.496 36.364 0.00 0.00 0.00 2.71
5950 6559 4.870363 ACAGCTTGCAAAACGATATTGTT 58.130 34.783 0.00 2.21 0.00 2.83
5951 6560 6.007936 ACAGCTTGCAAAACGATATTGTTA 57.992 33.333 8.80 0.00 0.00 2.41
5952 6561 6.620678 ACAGCTTGCAAAACGATATTGTTAT 58.379 32.000 8.80 0.00 0.00 1.89
5953 6562 7.090173 ACAGCTTGCAAAACGATATTGTTATT 58.910 30.769 8.80 3.70 0.00 1.40
5954 6563 7.062138 ACAGCTTGCAAAACGATATTGTTATTG 59.938 33.333 8.80 14.49 0.00 1.90
5955 6564 7.062138 CAGCTTGCAAAACGATATTGTTATTGT 59.938 33.333 20.21 3.53 34.45 2.71
5956 6565 7.062138 AGCTTGCAAAACGATATTGTTATTGTG 59.938 33.333 20.21 13.50 33.49 3.33
5957 6566 7.573916 TTGCAAAACGATATTGTTATTGTGG 57.426 32.000 20.21 4.80 33.49 4.17
5958 6567 6.096036 TGCAAAACGATATTGTTATTGTGGG 58.904 36.000 20.21 6.70 33.49 4.61
5959 6568 6.071896 TGCAAAACGATATTGTTATTGTGGGA 60.072 34.615 20.21 2.85 33.49 4.37
5960 6569 6.252655 GCAAAACGATATTGTTATTGTGGGAC 59.747 38.462 20.21 9.03 33.49 4.46
5961 6570 7.309177 CAAAACGATATTGTTATTGTGGGACA 58.691 34.615 8.80 0.00 33.49 4.02
5962 6571 6.677781 AACGATATTGTTATTGTGGGACAG 57.322 37.500 6.55 0.00 41.80 3.51
5963 6572 5.984725 ACGATATTGTTATTGTGGGACAGA 58.015 37.500 0.00 0.00 41.80 3.41
5964 6573 6.049149 ACGATATTGTTATTGTGGGACAGAG 58.951 40.000 0.00 0.00 41.80 3.35
5965 6574 5.466728 CGATATTGTTATTGTGGGACAGAGG 59.533 44.000 0.00 0.00 41.80 3.69
5966 6575 4.927267 ATTGTTATTGTGGGACAGAGGA 57.073 40.909 0.00 0.00 41.80 3.71
5967 6576 4.715534 TTGTTATTGTGGGACAGAGGAA 57.284 40.909 0.00 0.00 41.80 3.36
5968 6577 4.286297 TGTTATTGTGGGACAGAGGAAG 57.714 45.455 0.00 0.00 41.80 3.46
6084 6696 5.066764 AGTTAGAAGCAGAGAGGACGATAAC 59.933 44.000 0.00 0.00 0.00 1.89
6159 6771 6.245408 TGTAATATGGAAGCTTTTGAGGTGT 58.755 36.000 0.00 0.00 0.00 4.16
6160 6772 7.398829 TGTAATATGGAAGCTTTTGAGGTGTA 58.601 34.615 0.00 0.00 0.00 2.90
6164 6776 5.298989 TGGAAGCTTTTGAGGTGTAGTTA 57.701 39.130 0.00 0.00 0.00 2.24
6198 6971 0.250989 GAATTTGGACCACGGGGACA 60.251 55.000 12.96 6.15 38.05 4.02
6232 7013 8.362639 CCCTTTATCAAAATGATGAGTTATGGG 58.637 37.037 3.17 0.00 37.70 4.00
6342 7123 7.016661 CCCCTCTCATAGGCTCTAGAAAATAAA 59.983 40.741 0.00 0.00 45.03 1.40
6449 7230 2.221169 GCACCATGTCACTTCAGAACA 58.779 47.619 0.00 0.00 0.00 3.18
6465 7246 8.299570 ACTTCAGAACAAAGCTTACCAATATTG 58.700 33.333 8.58 8.58 0.00 1.90
6504 7285 6.061022 AGGGGAAAACAAACACAAAGATTT 57.939 33.333 0.00 0.00 0.00 2.17
6514 7295 7.996385 ACAAACACAAAGATTTAGTTGTAGCT 58.004 30.769 0.00 0.00 35.81 3.32
6515 7296 9.116067 ACAAACACAAAGATTTAGTTGTAGCTA 57.884 29.630 0.00 0.00 35.81 3.32
6516 7297 9.599322 CAAACACAAAGATTTAGTTGTAGCTAG 57.401 33.333 0.00 0.00 35.81 3.42
6525 7306 9.953697 AGATTTAGTTGTAGCTAGTATCTTTCG 57.046 33.333 0.00 0.00 0.00 3.46
6537 7318 7.868415 AGCTAGTATCTTTCGTCACCATTATTC 59.132 37.037 0.00 0.00 0.00 1.75
6583 7364 1.156736 AACGACTGCACATGCCTTAC 58.843 50.000 0.49 0.00 41.18 2.34
6670 7451 0.550914 AACCTGTGTGCTCCTTTGGA 59.449 50.000 0.00 0.00 0.00 3.53
6711 7492 7.094377 ACAGAACTAACTTGAGCTTGTTTTTCA 60.094 33.333 15.78 0.00 0.00 2.69
6717 7498 4.038402 ACTTGAGCTTGTTTTTCATCCCTG 59.962 41.667 0.00 0.00 0.00 4.45
6759 7540 5.972935 TGAATCAATAGTCTAGCGTCCAAA 58.027 37.500 0.00 0.00 0.00 3.28
6767 7548 5.251601 AGTCTAGCGTCCAAAGTATCTTC 57.748 43.478 0.00 0.00 0.00 2.87
6768 7549 4.705507 AGTCTAGCGTCCAAAGTATCTTCA 59.294 41.667 0.00 0.00 0.00 3.02
6918 7700 1.270518 ACACTGAGCAGCGAACTGATT 60.271 47.619 0.00 0.00 44.20 2.57
6928 7710 6.201806 GAGCAGCGAACTGATTACTAATGATT 59.798 38.462 0.00 0.00 44.20 2.57
6931 7713 7.470289 AGCGAACTGATTACTAATGATTGTC 57.530 36.000 0.00 0.00 0.00 3.18
6932 7714 7.268586 AGCGAACTGATTACTAATGATTGTCT 58.731 34.615 0.00 0.00 0.00 3.41
6966 7749 2.716244 CCGCTGTCGATCTACGCT 59.284 61.111 10.65 0.00 42.26 5.07
7020 7803 1.925972 GACCCTCCCTCCTGGCTTT 60.926 63.158 0.00 0.00 0.00 3.51
7062 7845 0.105964 TCGCCGGCTTACTAATGCAT 59.894 50.000 26.68 0.00 0.00 3.96
7063 7846 0.235665 CGCCGGCTTACTAATGCATG 59.764 55.000 26.68 0.00 0.00 4.06
7139 7922 5.408204 CATGCATTGCTTCGTATTCTACA 57.592 39.130 10.49 0.00 0.00 2.74
7140 7923 5.993891 CATGCATTGCTTCGTATTCTACAT 58.006 37.500 10.49 0.00 0.00 2.29
7141 7924 7.120789 CATGCATTGCTTCGTATTCTACATA 57.879 36.000 10.49 0.00 0.00 2.29
7143 7926 7.177498 TGCATTGCTTCGTATTCTACATAAG 57.823 36.000 10.49 0.00 0.00 1.73
7144 7927 6.074005 GCATTGCTTCGTATTCTACATAAGC 58.926 40.000 0.16 11.53 42.78 3.09
7146 7929 7.571983 GCATTGCTTCGTATTCTACATAAGCAT 60.572 37.037 17.60 10.02 47.00 3.79
7206 8009 1.691976 CCACCTGACCTGACTGTTGTA 59.308 52.381 0.00 0.00 0.00 2.41
7213 8016 4.126437 TGACCTGACTGTTGTATGTTGTG 58.874 43.478 0.00 0.00 0.00 3.33
7227 8030 3.138884 TGTTGTGTGGTAGCATGTCAT 57.861 42.857 0.00 0.00 0.00 3.06
7228 8031 4.278975 TGTTGTGTGGTAGCATGTCATA 57.721 40.909 0.00 0.00 0.00 2.15
7229 8032 4.842574 TGTTGTGTGGTAGCATGTCATAT 58.157 39.130 0.00 0.00 0.00 1.78
7230 8033 5.983540 TGTTGTGTGGTAGCATGTCATATA 58.016 37.500 0.00 0.00 0.00 0.86
7231 8034 6.591001 TGTTGTGTGGTAGCATGTCATATAT 58.409 36.000 0.00 0.00 0.00 0.86
7232 8035 6.705825 TGTTGTGTGGTAGCATGTCATATATC 59.294 38.462 0.00 0.00 0.00 1.63
7233 8036 5.469479 TGTGTGGTAGCATGTCATATATCG 58.531 41.667 0.00 0.00 0.00 2.92
7234 8037 5.242838 TGTGTGGTAGCATGTCATATATCGA 59.757 40.000 0.00 0.00 0.00 3.59
7235 8038 5.802451 GTGTGGTAGCATGTCATATATCGAG 59.198 44.000 0.00 0.00 0.00 4.04
7236 8039 5.476945 TGTGGTAGCATGTCATATATCGAGT 59.523 40.000 0.00 0.00 0.00 4.18
7508 8311 1.647629 CGCCAGCAAGATCATCAGC 59.352 57.895 0.00 0.00 0.00 4.26
7517 8320 1.047596 AGATCATCAGCAGGACGCCT 61.048 55.000 0.00 0.00 44.04 5.52
7538 8341 2.064581 GTCCATCTGGGCCCGTACT 61.065 63.158 19.37 0.00 36.21 2.73
7629 8442 1.140312 GTGCTGGAGGGGGAATATGA 58.860 55.000 0.00 0.00 0.00 2.15
7656 8469 2.808543 GCTTTGTGTGGGAGACAACTAG 59.191 50.000 0.00 0.00 35.91 2.57
7658 8471 1.717032 TGTGTGGGAGACAACTAGCT 58.283 50.000 0.00 0.00 35.91 3.32
7773 8586 1.592223 GACGGACAGTTGGAGAGGG 59.408 63.158 0.00 0.00 0.00 4.30
7815 8633 1.338020 ACTGCCTGCTGCTTTGTTTAC 59.662 47.619 0.00 0.00 42.00 2.01
7816 8634 0.673437 TGCCTGCTGCTTTGTTTACC 59.327 50.000 0.00 0.00 42.00 2.85
7817 8635 0.387239 GCCTGCTGCTTTGTTTACCG 60.387 55.000 0.00 0.00 36.87 4.02
7919 8746 5.561339 CGCCGGATTTTGTTACAGTACTTTT 60.561 40.000 5.05 0.00 0.00 2.27
7920 8747 5.627780 GCCGGATTTTGTTACAGTACTTTTG 59.372 40.000 5.05 0.00 0.00 2.44
7931 8788 1.017701 GTACTTTTGGCGACCTCGGG 61.018 60.000 0.00 0.00 40.23 5.14
7933 8790 1.599797 CTTTTGGCGACCTCGGGTT 60.600 57.895 0.00 0.00 35.25 4.11
7962 8822 5.303333 CCTTCCAGGGAGTACTAGATTTCTC 59.697 48.000 0.00 0.00 0.00 2.87
7968 8828 4.890581 GGGAGTACTAGATTTCTCTCTGCA 59.109 45.833 0.00 0.00 32.66 4.41
7970 8830 6.717540 GGGAGTACTAGATTTCTCTCTGCATA 59.282 42.308 0.00 0.00 32.66 3.14
7971 8831 7.094377 GGGAGTACTAGATTTCTCTCTGCATAG 60.094 44.444 0.00 0.00 32.66 2.23
7977 8837 2.975732 TTCTCTCTGCATAGCTGTGG 57.024 50.000 12.79 0.00 0.00 4.17
8021 8881 2.666508 CTGTCGGTGAATGTTTACTCCG 59.333 50.000 0.00 0.00 42.14 4.63
8022 8882 1.997606 GTCGGTGAATGTTTACTCCGG 59.002 52.381 0.00 0.00 41.45 5.14
8023 8883 0.725117 CGGTGAATGTTTACTCCGGC 59.275 55.000 0.00 0.00 38.79 6.13
8024 8884 1.092348 GGTGAATGTTTACTCCGGCC 58.908 55.000 0.00 0.00 0.00 6.13
8066 8926 1.021202 CTTGTTGGCTGTCGGTGAAA 58.979 50.000 0.00 0.00 0.00 2.69
8067 8927 1.002468 CTTGTTGGCTGTCGGTGAAAG 60.002 52.381 0.00 0.00 0.00 2.62
8073 8933 0.582005 GCTGTCGGTGAAAGTGTGTC 59.418 55.000 0.00 0.00 0.00 3.67
8075 8935 2.550978 CTGTCGGTGAAAGTGTGTCTT 58.449 47.619 0.00 0.00 38.10 3.01
8081 8941 3.303132 CGGTGAAAGTGTGTCTTAACAGC 60.303 47.826 0.00 0.00 35.64 4.40
8087 8947 1.227999 TGTGTCTTAACAGCCAGCGC 61.228 55.000 0.00 0.00 35.64 5.92
8088 8948 1.070615 TGTCTTAACAGCCAGCGCA 59.929 52.632 11.47 0.00 37.52 6.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.380524 TGTAAACGGGGTGTTGTGTG 58.619 50.000 0.00 0.00 40.84 3.82
41 42 1.950909 CATGTAAACGGGGTGTTGTGT 59.049 47.619 0.00 0.00 40.84 3.72
42 43 1.268352 CCATGTAAACGGGGTGTTGTG 59.732 52.381 0.00 0.00 40.84 3.33
43 44 1.611519 CCATGTAAACGGGGTGTTGT 58.388 50.000 0.00 0.00 40.84 3.32
44 45 0.885196 CCCATGTAAACGGGGTGTTG 59.115 55.000 0.00 0.00 40.84 3.33
45 46 0.896479 GCCCATGTAAACGGGGTGTT 60.896 55.000 10.35 0.00 44.07 3.32
46 47 1.303806 GCCCATGTAAACGGGGTGT 60.304 57.895 10.35 0.00 44.07 4.16
47 48 2.403378 CGCCCATGTAAACGGGGTG 61.403 63.158 10.35 9.34 45.12 4.61
48 49 2.045731 CGCCCATGTAAACGGGGT 60.046 61.111 10.35 0.00 44.07 4.95
49 50 2.110352 GTCGCCCATGTAAACGGGG 61.110 63.158 5.52 5.52 43.31 5.73
50 51 1.376166 TGTCGCCCATGTAAACGGG 60.376 57.895 0.00 0.00 46.15 5.28
51 52 0.672401 AGTGTCGCCCATGTAAACGG 60.672 55.000 0.00 0.00 0.00 4.44
52 53 1.153353 AAGTGTCGCCCATGTAAACG 58.847 50.000 0.00 0.00 0.00 3.60
53 54 3.305110 CAAAAGTGTCGCCCATGTAAAC 58.695 45.455 0.00 0.00 0.00 2.01
54 55 2.287909 GCAAAAGTGTCGCCCATGTAAA 60.288 45.455 0.00 0.00 0.00 2.01
55 56 1.268352 GCAAAAGTGTCGCCCATGTAA 59.732 47.619 0.00 0.00 0.00 2.41
56 57 0.878416 GCAAAAGTGTCGCCCATGTA 59.122 50.000 0.00 0.00 0.00 2.29
57 58 1.659794 GCAAAAGTGTCGCCCATGT 59.340 52.632 0.00 0.00 0.00 3.21
58 59 1.442520 CGCAAAAGTGTCGCCCATG 60.443 57.895 0.00 0.00 0.00 3.66
59 60 2.953821 CGCAAAAGTGTCGCCCAT 59.046 55.556 0.00 0.00 0.00 4.00
60 61 3.959975 GCGCAAAAGTGTCGCCCA 61.960 61.111 0.30 0.00 41.41 5.36
63 64 2.725815 GTGGCGCAAAAGTGTCGC 60.726 61.111 10.83 0.00 44.33 5.19
64 65 1.654137 GTGTGGCGCAAAAGTGTCG 60.654 57.895 10.83 0.00 0.00 4.35
65 66 0.179150 TTGTGTGGCGCAAAAGTGTC 60.179 50.000 10.83 0.00 30.61 3.67
66 67 0.457681 GTTGTGTGGCGCAAAAGTGT 60.458 50.000 10.83 0.00 35.60 3.55
67 68 0.457509 TGTTGTGTGGCGCAAAAGTG 60.458 50.000 10.83 0.00 35.60 3.16
68 69 0.457681 GTGTTGTGTGGCGCAAAAGT 60.458 50.000 10.83 0.00 35.60 2.66
69 70 1.145162 GGTGTTGTGTGGCGCAAAAG 61.145 55.000 10.83 0.00 35.60 2.27
70 71 1.153745 GGTGTTGTGTGGCGCAAAA 60.154 52.632 10.83 0.00 35.60 2.44
71 72 2.492090 GGTGTTGTGTGGCGCAAA 59.508 55.556 10.83 0.00 35.60 3.68
72 73 3.522731 GGGTGTTGTGTGGCGCAA 61.523 61.111 10.83 0.00 0.00 4.85
76 77 4.887190 ACGGGGGTGTTGTGTGGC 62.887 66.667 0.00 0.00 0.00 5.01
77 78 0.465824 TAAACGGGGGTGTTGTGTGG 60.466 55.000 0.00 0.00 31.10 4.17
95 96 1.448985 GCAAAAGTGTCGCCCATCTA 58.551 50.000 0.00 0.00 0.00 1.98
97 98 1.154225 CGCAAAAGTGTCGCCCATC 60.154 57.895 0.00 0.00 0.00 3.51
99 100 3.959975 GCGCAAAAGTGTCGCCCA 61.960 61.111 0.30 0.00 41.41 5.36
139 140 1.147473 TGTGTGTGATACTGCTTGCG 58.853 50.000 0.00 0.00 0.00 4.85
142 143 2.143122 CCGTTGTGTGTGATACTGCTT 58.857 47.619 0.00 0.00 0.00 3.91
153 154 2.896801 GCTCAGGTGCCGTTGTGTG 61.897 63.158 0.00 0.00 0.00 3.82
216 217 2.879813 GAAACCCGCCGGCTATTGGA 62.880 60.000 26.68 0.00 0.00 3.53
219 220 2.512974 CGAAACCCGCCGGCTATT 60.513 61.111 26.68 12.96 0.00 1.73
246 253 1.519455 GTCTCGTCGCCATTGGAGG 60.519 63.158 6.95 0.00 0.00 4.30
251 258 2.490217 CCTCGTCTCGTCGCCATT 59.510 61.111 0.00 0.00 0.00 3.16
252 259 3.518998 CCCTCGTCTCGTCGCCAT 61.519 66.667 0.00 0.00 0.00 4.40
255 262 3.398353 CTTCCCCTCGTCTCGTCGC 62.398 68.421 0.00 0.00 0.00 5.19
268 275 1.134371 CGACATCCCTTCTTCCTTCCC 60.134 57.143 0.00 0.00 0.00 3.97
269 276 1.134371 CCGACATCCCTTCTTCCTTCC 60.134 57.143 0.00 0.00 0.00 3.46
275 282 2.998949 GGGCCGACATCCCTTCTT 59.001 61.111 0.00 0.00 40.66 2.52
293 301 1.676529 CTGCGAAACCCTAGATCGAGA 59.323 52.381 4.15 0.00 38.82 4.04
310 318 3.655810 CTCCTCCTGGCGACACTGC 62.656 68.421 0.00 0.00 35.60 4.40
331 339 0.249155 TCGAAAACACGCCGAAGTCT 60.249 50.000 0.00 0.00 0.00 3.24
335 343 0.513820 GGATTCGAAAACACGCCGAA 59.486 50.000 0.00 0.00 44.71 4.30
337 345 1.133869 GGGATTCGAAAACACGCCG 59.866 57.895 0.00 0.00 0.00 6.46
338 346 0.168128 CTGGGATTCGAAAACACGCC 59.832 55.000 0.00 0.00 0.00 5.68
339 347 1.128692 CTCTGGGATTCGAAAACACGC 59.871 52.381 0.00 3.76 0.00 5.34
340 348 2.413837 ACTCTGGGATTCGAAAACACG 58.586 47.619 0.00 0.00 0.00 4.49
341 349 3.188667 GGAACTCTGGGATTCGAAAACAC 59.811 47.826 0.00 1.07 0.00 3.32
881 902 0.528684 GAGGAAGATTCGTCCGGCTG 60.529 60.000 12.19 0.00 40.36 4.85
882 903 1.817209 GAGGAAGATTCGTCCGGCT 59.183 57.895 12.19 0.00 40.36 5.52
883 904 4.421952 GAGGAAGATTCGTCCGGC 57.578 61.111 12.19 6.02 40.36 6.13
900 921 2.265182 GGATCGAGCGAGAGGAGGG 61.265 68.421 0.00 0.00 0.00 4.30
901 922 2.265182 GGGATCGAGCGAGAGGAGG 61.265 68.421 0.00 0.00 0.00 4.30
902 923 1.527148 TGGGATCGAGCGAGAGGAG 60.527 63.158 0.00 0.00 0.00 3.69
903 924 1.824329 GTGGGATCGAGCGAGAGGA 60.824 63.158 0.00 0.00 0.00 3.71
904 925 2.725008 GTGGGATCGAGCGAGAGG 59.275 66.667 0.00 0.00 0.00 3.69
905 926 1.667154 TTGGTGGGATCGAGCGAGAG 61.667 60.000 0.00 0.00 0.00 3.20
906 927 1.680989 TTGGTGGGATCGAGCGAGA 60.681 57.895 0.00 0.00 0.00 4.04
907 928 1.519455 GTTGGTGGGATCGAGCGAG 60.519 63.158 0.00 0.00 0.00 5.03
908 929 2.577059 GTTGGTGGGATCGAGCGA 59.423 61.111 0.00 0.00 0.00 4.93
909 930 2.511600 GGTTGGTGGGATCGAGCG 60.512 66.667 0.00 0.00 0.00 5.03
910 931 1.745489 GTGGTTGGTGGGATCGAGC 60.745 63.158 0.00 0.00 0.00 5.03
942 963 4.911864 TGCGTAGGCAGTAGGCAGTAGA 62.912 54.545 5.89 0.00 45.43 2.59
943 964 2.623623 TGCGTAGGCAGTAGGCAGTAG 61.624 57.143 5.89 0.00 45.43 2.57
944 965 0.681887 TGCGTAGGCAGTAGGCAGTA 60.682 55.000 5.89 0.00 45.43 2.74
945 966 1.982395 TGCGTAGGCAGTAGGCAGT 60.982 57.895 5.89 0.00 45.43 4.40
946 967 2.892640 TGCGTAGGCAGTAGGCAG 59.107 61.111 5.89 0.00 45.43 4.85
1447 1486 4.095400 GAGGGAGGGGAGGGAGCA 62.095 72.222 0.00 0.00 0.00 4.26
1448 1487 4.890306 GGAGGGAGGGGAGGGAGC 62.890 77.778 0.00 0.00 0.00 4.70
1453 1493 2.612251 GAGGAGGAGGGAGGGGAG 59.388 72.222 0.00 0.00 0.00 4.30
1454 1494 3.036959 GGAGGAGGAGGGAGGGGA 61.037 72.222 0.00 0.00 0.00 4.81
1465 1505 2.420890 GATGCTGGAGCGGAGGAG 59.579 66.667 0.00 0.00 45.83 3.69
1471 1511 1.783031 GCTCAATGGATGCTGGAGCG 61.783 60.000 8.88 0.00 45.83 5.03
1472 1512 1.783031 CGCTCAATGGATGCTGGAGC 61.783 60.000 12.74 12.74 45.61 4.70
1475 1515 1.001706 CAATCGCTCAATGGATGCTGG 60.002 52.381 0.00 0.00 0.00 4.85
1477 1517 1.945394 GTCAATCGCTCAATGGATGCT 59.055 47.619 0.00 0.00 0.00 3.79
1479 1519 2.289820 CTGGTCAATCGCTCAATGGATG 59.710 50.000 0.00 0.00 0.00 3.51
1480 1520 2.171237 TCTGGTCAATCGCTCAATGGAT 59.829 45.455 0.00 0.00 0.00 3.41
1481 1521 1.554617 TCTGGTCAATCGCTCAATGGA 59.445 47.619 0.00 0.00 0.00 3.41
1489 1529 1.086634 GGTCTGCTCTGGTCAATCGC 61.087 60.000 0.00 0.00 0.00 4.58
1490 1530 0.803768 CGGTCTGCTCTGGTCAATCG 60.804 60.000 0.00 0.00 0.00 3.34
1529 1590 2.202892 GCGGAACCACCCTCGATC 60.203 66.667 0.00 0.00 34.64 3.69
1547 1625 2.298158 GAATCTCCCCGCTGCTCGAA 62.298 60.000 0.00 0.00 41.67 3.71
1675 1772 3.834799 CGGCCCGGTACTGTCTCC 61.835 72.222 0.00 0.00 0.00 3.71
1728 1825 2.490165 GCAGCAAGCATGTCCAGAT 58.510 52.632 0.00 0.00 44.79 2.90
1739 1847 4.052229 GTGCCCAGCAGCAGCAAG 62.052 66.667 3.17 0.00 45.14 4.01
1754 1862 1.512926 AGTAAAGAAGCACAGCCGTG 58.487 50.000 0.00 0.00 46.56 4.94
1779 1887 0.032952 GCGTCCACTAGACACCACAA 59.967 55.000 0.00 0.00 46.69 3.33
1781 1889 1.080025 GGCGTCCACTAGACACCAC 60.080 63.158 0.00 0.00 45.57 4.16
1948 2147 1.007387 GTTTCCAAACTGCTGCCCG 60.007 57.895 0.00 0.00 36.03 6.13
1949 2148 1.115326 AGGTTTCCAAACTGCTGCCC 61.115 55.000 0.00 0.00 38.89 5.36
1950 2149 0.032540 CAGGTTTCCAAACTGCTGCC 59.967 55.000 0.00 0.00 38.89 4.85
1951 2150 0.032540 CCAGGTTTCCAAACTGCTGC 59.967 55.000 2.32 0.00 38.89 5.25
1953 2152 2.683211 ATCCAGGTTTCCAAACTGCT 57.317 45.000 2.32 0.00 38.89 4.24
1955 2154 6.586082 CGAATAAAATCCAGGTTTCCAAACTG 59.414 38.462 2.32 0.00 38.89 3.16
1956 2155 6.295067 CCGAATAAAATCCAGGTTTCCAAACT 60.295 38.462 2.32 0.00 38.89 2.66
1957 2156 5.867174 CCGAATAAAATCCAGGTTTCCAAAC 59.133 40.000 0.00 0.00 38.17 2.93
1999 2203 4.619628 GCAATTTTATTTGGGTACGGCTGT 60.620 41.667 2.42 2.42 0.00 4.40
2002 2206 4.118093 AGCAATTTTATTTGGGTACGGC 57.882 40.909 0.00 0.00 0.00 5.68
2003 2207 4.796312 CGAAGCAATTTTATTTGGGTACGG 59.204 41.667 0.00 0.00 0.00 4.02
2004 2208 4.796312 CCGAAGCAATTTTATTTGGGTACG 59.204 41.667 0.00 0.00 0.00 3.67
2006 2210 5.986501 ACCGAAGCAATTTTATTTGGGTA 57.013 34.783 5.65 0.00 32.57 3.69
2050 2515 7.444487 GGAAATCCGCCATCTAAACTTAACTAT 59.556 37.037 0.00 0.00 0.00 2.12
2071 2536 3.057315 CCAAATCTTGTCAGCACGGAAAT 60.057 43.478 0.00 0.00 0.00 2.17
2080 2545 3.254166 CACAACCTCCCAAATCTTGTCAG 59.746 47.826 0.00 0.00 0.00 3.51
2106 2571 3.383761 CAAAAAGGCTTGCATTTCGACT 58.616 40.909 0.00 0.00 0.00 4.18
2130 2599 2.123982 CCCTGCCCATGGAGAAGC 60.124 66.667 15.22 8.71 0.00 3.86
2131 2600 2.123982 GCCCTGCCCATGGAGAAG 60.124 66.667 15.22 7.30 0.00 2.85
2132 2601 3.743017 GGCCCTGCCCATGGAGAA 61.743 66.667 15.22 0.00 44.06 2.87
2230 2699 7.076983 GTGCAAAAATAACAATGGTGAAATGG 58.923 34.615 0.00 0.00 0.00 3.16
2264 2733 5.385198 TGATAGAAATTTGGGGAGCATACC 58.615 41.667 0.00 0.00 0.00 2.73
2319 2788 6.205464 GTCCAAGAAATGTTCATCAGAAGTCA 59.795 38.462 0.00 0.00 33.63 3.41
2320 2789 6.606768 GTCCAAGAAATGTTCATCAGAAGTC 58.393 40.000 0.00 0.00 33.63 3.01
2321 2790 5.180117 CGTCCAAGAAATGTTCATCAGAAGT 59.820 40.000 0.00 0.00 33.63 3.01
2322 2791 5.625251 CGTCCAAGAAATGTTCATCAGAAG 58.375 41.667 0.00 0.00 33.63 2.85
2323 2792 4.083324 GCGTCCAAGAAATGTTCATCAGAA 60.083 41.667 0.00 0.00 0.00 3.02
2325 2794 3.438087 AGCGTCCAAGAAATGTTCATCAG 59.562 43.478 0.00 0.00 0.00 2.90
2326 2795 3.411446 AGCGTCCAAGAAATGTTCATCA 58.589 40.909 0.00 0.00 0.00 3.07
2327 2796 5.545658 TTAGCGTCCAAGAAATGTTCATC 57.454 39.130 0.00 0.00 0.00 2.92
2328 2797 7.120579 TGTTATTAGCGTCCAAGAAATGTTCAT 59.879 33.333 0.00 0.00 0.00 2.57
2358 2829 4.121317 CTGCAGAAGTGAAGAGATCCATC 58.879 47.826 8.42 0.00 29.09 3.51
2375 2846 2.105006 AGACAACCACATAGCTGCAG 57.895 50.000 10.11 10.11 0.00 4.41
2605 3077 5.163353 TGTGAGTGTGAGTTCCTTATGTCAA 60.163 40.000 0.00 0.00 0.00 3.18
2939 3415 9.903682 TTGTATAAATATACTCGAGTGCTTACC 57.096 33.333 28.12 12.76 39.36 2.85
2989 3465 4.035324 CAGCATAATGAGAAGCAGGACAAG 59.965 45.833 0.00 0.00 0.00 3.16
3053 3530 5.304686 TGCCCATCTCCGAATAATAAAGT 57.695 39.130 0.00 0.00 0.00 2.66
3064 3541 3.189287 GCTATTTTACATGCCCATCTCCG 59.811 47.826 0.00 0.00 0.00 4.63
3194 3679 7.657354 CCAGCATAGCAGTTCAATAGTATACAA 59.343 37.037 5.50 0.00 0.00 2.41
3195 3680 7.015195 TCCAGCATAGCAGTTCAATAGTATACA 59.985 37.037 5.50 0.00 0.00 2.29
3331 3818 8.682936 AAAAACAGAGCAGTAGGGAATATATG 57.317 34.615 0.00 0.00 0.00 1.78
3333 3820 7.857456 TGAAAAACAGAGCAGTAGGGAATATA 58.143 34.615 0.00 0.00 0.00 0.86
3340 3827 6.801539 TGTAATGAAAAACAGAGCAGTAGG 57.198 37.500 0.00 0.00 0.00 3.18
3409 3896 7.786943 AGATTGAAGGGACTGATAGTCTGATAA 59.213 37.037 8.68 0.64 44.46 1.75
3681 4191 5.990120 TGTAAAGGTAGTCCCTCTGTAAC 57.010 43.478 0.00 0.00 45.47 2.50
3741 4251 2.884012 TCATGCACAATCGTTCCACTTT 59.116 40.909 0.00 0.00 0.00 2.66
3770 4280 9.574516 AACTTTGTTCAGATAAAGGTACTGAAT 57.425 29.630 0.00 0.00 46.97 2.57
3785 4367 5.875930 AGGTTCGTGTTAAACTTTGTTCAG 58.124 37.500 0.00 0.00 0.00 3.02
3916 4498 5.818678 ACAGACTTGGTACCTTCAATACA 57.181 39.130 14.36 0.00 0.00 2.29
3958 4540 6.481434 AACCGGTAGCTAAAGAACAGATAT 57.519 37.500 8.00 0.00 0.00 1.63
3960 4542 4.820894 AACCGGTAGCTAAAGAACAGAT 57.179 40.909 8.00 0.00 0.00 2.90
4038 4620 7.373493 AGAAATGCAGTACCTTCAAATTCTTG 58.627 34.615 0.00 0.00 0.00 3.02
4141 4723 6.093404 TCTCACGAACACAATGAAGAGATAC 58.907 40.000 0.00 0.00 0.00 2.24
4354 4936 5.016173 CCCCATAACTTTGACAAGAATGGA 58.984 41.667 15.98 0.00 43.08 3.41
4464 5046 6.364435 CAGAAAAGATGAGCCTAAAACTTTGC 59.636 38.462 0.00 0.00 0.00 3.68
4474 5056 4.285517 TCAAGAGACAGAAAAGATGAGCCT 59.714 41.667 0.00 0.00 0.00 4.58
4517 5099 2.942752 GCATGCACCAGGAAGATCAAGA 60.943 50.000 14.21 0.00 0.00 3.02
4723 5318 3.381272 TGGGTTTTCAACTCAAAGAGCTG 59.619 43.478 0.00 0.00 39.37 4.24
4789 5384 7.664082 ATCAACTATGAGCAGATAAAATCCG 57.336 36.000 0.00 0.00 39.39 4.18
5055 5661 1.399791 GCTAGACAAGATGCAACAGCC 59.600 52.381 0.00 0.00 0.00 4.85
5104 5710 0.855349 GGAGAAGACGTGCGCATATG 59.145 55.000 15.91 9.77 0.00 1.78
5421 6030 3.084039 CTGTGACATGGCCACTACAAAT 58.916 45.455 8.16 0.00 35.66 2.32
5426 6035 0.321564 GCACTGTGACATGGCCACTA 60.322 55.000 8.16 0.00 35.66 2.74
5447 6056 1.600957 CTTGCCGATGCCTCACATTAG 59.399 52.381 0.00 0.00 39.84 1.73
5448 6057 1.667236 CTTGCCGATGCCTCACATTA 58.333 50.000 0.00 0.00 39.84 1.90
5449 6058 1.660560 GCTTGCCGATGCCTCACATT 61.661 55.000 0.00 0.00 39.84 2.71
5450 6059 2.117156 GCTTGCCGATGCCTCACAT 61.117 57.895 0.00 0.00 43.54 3.21
5452 6061 2.747460 TGCTTGCCGATGCCTCAC 60.747 61.111 0.00 0.00 36.33 3.51
5453 6062 2.747460 GTGCTTGCCGATGCCTCA 60.747 61.111 0.00 0.00 36.33 3.86
5454 6063 2.117156 ATGTGCTTGCCGATGCCTC 61.117 57.895 0.00 0.00 36.33 4.70
5519 6128 2.095059 GCTGGATGACACACAATGAACC 60.095 50.000 0.00 0.00 0.00 3.62
5547 6156 2.203584 ACAAGGCTTCCAGATCCAGAT 58.796 47.619 0.00 0.00 0.00 2.90
5574 6183 9.632638 AATACAACATCTCAGCTTATAATGGTT 57.367 29.630 0.00 0.00 0.00 3.67
5576 6185 9.276590 TGAATACAACATCTCAGCTTATAATGG 57.723 33.333 0.00 0.00 0.00 3.16
5578 6187 9.836864 TGTGAATACAACATCTCAGCTTATAAT 57.163 29.630 0.00 0.00 32.88 1.28
5579 6188 9.098355 GTGTGAATACAACATCTCAGCTTATAA 57.902 33.333 0.00 0.00 38.82 0.98
5602 6211 1.166531 GCTGAAACGAAGCAGGGTGT 61.167 55.000 0.00 0.00 40.52 4.16
5620 6229 5.283060 ACGACATCTTTCTATTTGTGTGC 57.717 39.130 0.00 0.00 0.00 4.57
5637 6246 3.581265 AAACTTCCCCCTTTAACGACA 57.419 42.857 0.00 0.00 0.00 4.35
5639 6248 4.392047 GAGAAAACTTCCCCCTTTAACGA 58.608 43.478 0.00 0.00 0.00 3.85
5654 6263 7.563888 ACAACTTACAGTTAAGGGAGAAAAC 57.436 36.000 0.00 0.00 39.36 2.43
5673 6282 3.901844 TGCCTCACTTCTACCTAACAACT 59.098 43.478 0.00 0.00 0.00 3.16
5688 6297 2.821366 CTCCGCATGGTGCCTCAC 60.821 66.667 0.00 0.00 41.12 3.51
5751 6360 1.227853 GAGCAGTGGTCGGTTGGTT 60.228 57.895 6.57 0.00 0.00 3.67
5760 6369 2.100879 GACCAGAACCGAGCAGTGGT 62.101 60.000 0.00 0.00 44.37 4.16
5769 6378 1.217882 GTGTGTTGAGACCAGAACCG 58.782 55.000 0.00 0.00 0.00 4.44
5817 6426 5.536497 AGGGAAGGGAACACAAAGATTAT 57.464 39.130 0.00 0.00 0.00 1.28
5873 6482 8.202811 GGGACGGAGGGAGTATATATTAAAATC 58.797 40.741 0.00 0.00 0.00 2.17
5880 6489 4.901785 ATGGGACGGAGGGAGTATATAT 57.098 45.455 0.00 0.00 0.00 0.86
5885 6494 4.474303 TTATTATGGGACGGAGGGAGTA 57.526 45.455 0.00 0.00 0.00 2.59
5886 6495 3.339713 TTATTATGGGACGGAGGGAGT 57.660 47.619 0.00 0.00 0.00 3.85
5887 6496 4.347000 TCTTTTATTATGGGACGGAGGGAG 59.653 45.833 0.00 0.00 0.00 4.30
5888 6497 4.300345 TCTTTTATTATGGGACGGAGGGA 58.700 43.478 0.00 0.00 0.00 4.20
5889 6498 4.699925 TCTTTTATTATGGGACGGAGGG 57.300 45.455 0.00 0.00 0.00 4.30
5890 6499 4.929808 CGATCTTTTATTATGGGACGGAGG 59.070 45.833 0.00 0.00 0.00 4.30
5891 6500 5.539048 ACGATCTTTTATTATGGGACGGAG 58.461 41.667 0.00 0.00 0.00 4.63
5892 6501 5.540400 ACGATCTTTTATTATGGGACGGA 57.460 39.130 0.00 0.00 0.00 4.69
5893 6502 6.613755 AAACGATCTTTTATTATGGGACGG 57.386 37.500 0.00 0.00 0.00 4.79
5894 6503 6.413818 GCAAAACGATCTTTTATTATGGGACG 59.586 38.462 0.00 0.00 0.00 4.79
5895 6504 7.254852 TGCAAAACGATCTTTTATTATGGGAC 58.745 34.615 0.00 0.00 0.00 4.46
5896 6505 7.397892 TGCAAAACGATCTTTTATTATGGGA 57.602 32.000 0.00 0.00 0.00 4.37
5897 6506 7.254084 GCTTGCAAAACGATCTTTTATTATGGG 60.254 37.037 0.00 0.00 0.00 4.00
5898 6507 7.489113 AGCTTGCAAAACGATCTTTTATTATGG 59.511 33.333 0.00 0.00 0.00 2.74
5899 6508 8.398491 AGCTTGCAAAACGATCTTTTATTATG 57.602 30.769 0.00 0.00 0.00 1.90
5901 6510 9.900710 TTTAGCTTGCAAAACGATCTTTTATTA 57.099 25.926 0.00 0.00 0.00 0.98
5902 6511 8.810652 TTTAGCTTGCAAAACGATCTTTTATT 57.189 26.923 0.00 0.00 0.00 1.40
5903 6512 8.699749 GTTTTAGCTTGCAAAACGATCTTTTAT 58.300 29.630 0.00 0.00 36.47 1.40
5904 6513 7.702772 TGTTTTAGCTTGCAAAACGATCTTTTA 59.297 29.630 15.21 0.00 44.91 1.52
5905 6514 6.533367 TGTTTTAGCTTGCAAAACGATCTTTT 59.467 30.769 15.21 0.00 44.91 2.27
5906 6515 6.039616 TGTTTTAGCTTGCAAAACGATCTTT 58.960 32.000 15.21 0.00 44.91 2.52
5907 6516 5.587289 TGTTTTAGCTTGCAAAACGATCTT 58.413 33.333 15.21 0.00 44.91 2.40
5908 6517 5.181690 TGTTTTAGCTTGCAAAACGATCT 57.818 34.783 15.21 0.00 44.91 2.75
5909 6518 5.486095 CTGTTTTAGCTTGCAAAACGATC 57.514 39.130 15.21 0.00 44.91 3.69
5923 6532 7.114811 ACAATATCGTTTTGCAAGCTGTTTTAG 59.885 33.333 0.00 0.00 0.00 1.85
5924 6533 6.920758 ACAATATCGTTTTGCAAGCTGTTTTA 59.079 30.769 0.00 0.00 0.00 1.52
5925 6534 5.752955 ACAATATCGTTTTGCAAGCTGTTTT 59.247 32.000 0.00 0.00 0.00 2.43
5926 6535 5.288804 ACAATATCGTTTTGCAAGCTGTTT 58.711 33.333 0.00 0.00 0.00 2.83
5927 6536 4.870363 ACAATATCGTTTTGCAAGCTGTT 58.130 34.783 0.00 0.00 0.00 3.16
5928 6537 4.503741 ACAATATCGTTTTGCAAGCTGT 57.496 36.364 0.00 0.00 0.00 4.40
5929 6538 7.062138 ACAATAACAATATCGTTTTGCAAGCTG 59.938 33.333 0.00 0.00 0.00 4.24
5930 6539 7.062138 CACAATAACAATATCGTTTTGCAAGCT 59.938 33.333 0.00 0.00 0.00 3.74
5931 6540 7.166168 CACAATAACAATATCGTTTTGCAAGC 58.834 34.615 0.00 0.00 0.00 4.01
5932 6541 7.201427 CCCACAATAACAATATCGTTTTGCAAG 60.201 37.037 0.00 0.00 0.00 4.01
5933 6542 6.587990 CCCACAATAACAATATCGTTTTGCAA 59.412 34.615 0.00 0.00 0.00 4.08
5934 6543 6.071896 TCCCACAATAACAATATCGTTTTGCA 60.072 34.615 0.00 0.00 0.00 4.08
5935 6544 6.252655 GTCCCACAATAACAATATCGTTTTGC 59.747 38.462 0.00 0.00 0.00 3.68
5936 6545 7.309177 TGTCCCACAATAACAATATCGTTTTG 58.691 34.615 0.00 0.00 0.00 2.44
5937 6546 7.392113 TCTGTCCCACAATAACAATATCGTTTT 59.608 33.333 0.00 0.00 0.00 2.43
5938 6547 6.882140 TCTGTCCCACAATAACAATATCGTTT 59.118 34.615 0.00 0.00 0.00 3.60
5939 6548 6.411376 TCTGTCCCACAATAACAATATCGTT 58.589 36.000 0.00 0.00 0.00 3.85
5940 6549 5.984725 TCTGTCCCACAATAACAATATCGT 58.015 37.500 0.00 0.00 0.00 3.73
5941 6550 5.466728 CCTCTGTCCCACAATAACAATATCG 59.533 44.000 0.00 0.00 0.00 2.92
5942 6551 6.591935 TCCTCTGTCCCACAATAACAATATC 58.408 40.000 0.00 0.00 0.00 1.63
5943 6552 6.575244 TCCTCTGTCCCACAATAACAATAT 57.425 37.500 0.00 0.00 0.00 1.28
5944 6553 6.012858 ACTTCCTCTGTCCCACAATAACAATA 60.013 38.462 0.00 0.00 0.00 1.90
5945 6554 4.927267 TCCTCTGTCCCACAATAACAAT 57.073 40.909 0.00 0.00 0.00 2.71
5946 6555 4.104102 ACTTCCTCTGTCCCACAATAACAA 59.896 41.667 0.00 0.00 0.00 2.83
5947 6556 3.650942 ACTTCCTCTGTCCCACAATAACA 59.349 43.478 0.00 0.00 0.00 2.41
5948 6557 4.287766 ACTTCCTCTGTCCCACAATAAC 57.712 45.455 0.00 0.00 0.00 1.89
5949 6558 6.901300 AGTATACTTCCTCTGTCCCACAATAA 59.099 38.462 0.00 0.00 0.00 1.40
5950 6559 6.323996 CAGTATACTTCCTCTGTCCCACAATA 59.676 42.308 1.56 0.00 0.00 1.90
5951 6560 5.129485 CAGTATACTTCCTCTGTCCCACAAT 59.871 44.000 1.56 0.00 0.00 2.71
5952 6561 4.466370 CAGTATACTTCCTCTGTCCCACAA 59.534 45.833 1.56 0.00 0.00 3.33
5953 6562 4.023980 CAGTATACTTCCTCTGTCCCACA 58.976 47.826 1.56 0.00 0.00 4.17
5954 6563 3.385111 CCAGTATACTTCCTCTGTCCCAC 59.615 52.174 1.56 0.00 0.00 4.61
5955 6564 3.271225 TCCAGTATACTTCCTCTGTCCCA 59.729 47.826 1.56 0.00 0.00 4.37
5956 6565 3.892588 CTCCAGTATACTTCCTCTGTCCC 59.107 52.174 1.56 0.00 0.00 4.46
5957 6566 3.892588 CCTCCAGTATACTTCCTCTGTCC 59.107 52.174 1.56 0.00 0.00 4.02
5958 6567 3.892588 CCCTCCAGTATACTTCCTCTGTC 59.107 52.174 1.56 0.00 0.00 3.51
5959 6568 3.532232 TCCCTCCAGTATACTTCCTCTGT 59.468 47.826 1.56 0.00 0.00 3.41
5960 6569 4.141135 TCTCCCTCCAGTATACTTCCTCTG 60.141 50.000 1.56 0.00 0.00 3.35
5961 6570 4.055820 TCTCCCTCCAGTATACTTCCTCT 58.944 47.826 1.56 0.00 0.00 3.69
5962 6571 4.141111 ACTCTCCCTCCAGTATACTTCCTC 60.141 50.000 1.56 0.00 0.00 3.71
5963 6572 3.794971 ACTCTCCCTCCAGTATACTTCCT 59.205 47.826 1.56 0.00 0.00 3.36
5964 6573 4.187506 ACTCTCCCTCCAGTATACTTCC 57.812 50.000 1.56 0.00 0.00 3.46
5965 6574 4.957327 ACAACTCTCCCTCCAGTATACTTC 59.043 45.833 1.56 0.00 0.00 3.01
5966 6575 4.712337 CACAACTCTCCCTCCAGTATACTT 59.288 45.833 1.56 0.00 0.00 2.24
5967 6576 4.017407 TCACAACTCTCCCTCCAGTATACT 60.017 45.833 0.00 0.00 0.00 2.12
5968 6577 4.279145 TCACAACTCTCCCTCCAGTATAC 58.721 47.826 0.00 0.00 0.00 1.47
6000 6609 3.423539 TCAGTGAAAATGACCCTCCTG 57.576 47.619 0.00 0.00 35.16 3.86
6044 6656 5.068234 TCTAACTGATAAACTGGACCACG 57.932 43.478 0.00 0.00 0.00 4.94
6164 6776 8.387813 TGGTCCAAATTCCATAACTAACTAACT 58.612 33.333 0.00 0.00 0.00 2.24
6198 6971 8.102047 TCATCATTTTGATAAAGGGTTTGCATT 58.898 29.630 0.00 0.00 34.28 3.56
6232 7013 7.335422 ACATTCTCACTTGATGTCATACTTTCC 59.665 37.037 0.00 0.00 0.00 3.13
6465 7246 5.494390 TTCCCCTACTTTCACTCCTTAAC 57.506 43.478 0.00 0.00 0.00 2.01
6504 7285 7.201679 GGTGACGAAAGATACTAGCTACAACTA 60.202 40.741 0.00 0.00 0.00 2.24
6514 7295 6.639686 GCGAATAATGGTGACGAAAGATACTA 59.360 38.462 0.00 0.00 0.00 1.82
6515 7296 5.462398 GCGAATAATGGTGACGAAAGATACT 59.538 40.000 0.00 0.00 0.00 2.12
6516 7297 5.233476 TGCGAATAATGGTGACGAAAGATAC 59.767 40.000 0.00 0.00 0.00 2.24
6525 7306 3.465122 AAACGTGCGAATAATGGTGAC 57.535 42.857 0.00 0.00 0.00 3.67
6537 7318 3.058501 AGGAACCAAATAGAAAACGTGCG 60.059 43.478 0.00 0.00 0.00 5.34
6583 7364 2.808543 GCAACTGGGAAGTGACAGTAAG 59.191 50.000 0.00 0.00 46.49 2.34
6670 7451 9.628500 AGTTAGTTCTGTATTCAAGTCCTTTTT 57.372 29.630 0.00 0.00 0.00 1.94
6681 7462 7.659652 ACAAGCTCAAGTTAGTTCTGTATTC 57.340 36.000 0.00 0.00 0.00 1.75
6711 7492 2.485966 AGTATCTGACTGGCAGGGAT 57.514 50.000 20.34 19.20 44.98 3.85
6717 7498 9.494271 TTGATTCATTAATAGTATCTGACTGGC 57.506 33.333 0.00 0.00 39.39 4.85
6759 7540 5.643348 TGCAAACGATGAACATGAAGATACT 59.357 36.000 0.00 0.00 0.00 2.12
6767 7548 4.612614 GTGTAAGTGCAAACGATGAACATG 59.387 41.667 6.81 0.00 40.44 3.21
6768 7549 4.320202 GGTGTAAGTGCAAACGATGAACAT 60.320 41.667 6.81 0.00 40.44 2.71
6842 7624 9.010029 GGGAACAATGAGTAGTAATCAGAAAAA 57.990 33.333 6.45 0.00 0.00 1.94
6918 7700 9.102757 GCATCAAGAAAGAGACAATCATTAGTA 57.897 33.333 0.00 0.00 0.00 1.82
6928 7710 3.557898 GGGACTGCATCAAGAAAGAGACA 60.558 47.826 0.00 0.00 0.00 3.41
6930 7712 2.354103 CGGGACTGCATCAAGAAAGAGA 60.354 50.000 0.00 0.00 0.00 3.10
6931 7713 2.005451 CGGGACTGCATCAAGAAAGAG 58.995 52.381 0.00 0.00 0.00 2.85
6932 7714 1.945819 GCGGGACTGCATCAAGAAAGA 60.946 52.381 0.00 0.00 34.15 2.52
7014 7797 4.283403 GCGCCTGCAACAAAGCCA 62.283 61.111 0.00 0.00 42.15 4.75
7139 7922 0.259647 TCAAGCCCAGGCATGCTTAT 59.740 50.000 18.92 0.76 45.59 1.73
7140 7923 0.039472 TTCAAGCCCAGGCATGCTTA 59.961 50.000 18.92 0.00 45.59 3.09
7143 7926 1.217244 CTTTCAAGCCCAGGCATGC 59.783 57.895 9.90 9.90 44.88 4.06
7144 7927 1.895238 CCTTTCAAGCCCAGGCATG 59.105 57.895 12.03 9.70 44.88 4.06
7206 8009 3.138884 TGACATGCTACCACACAACAT 57.861 42.857 0.00 0.00 0.00 2.71
7213 8016 5.955488 ACTCGATATATGACATGCTACCAC 58.045 41.667 0.00 0.00 0.00 4.16
7229 8032 9.569167 CTCGCTTTTATTGGATATAACTCGATA 57.431 33.333 0.00 0.00 0.00 2.92
7230 8033 7.545965 CCTCGCTTTTATTGGATATAACTCGAT 59.454 37.037 0.00 0.00 0.00 3.59
7231 8034 6.866770 CCTCGCTTTTATTGGATATAACTCGA 59.133 38.462 0.00 0.00 0.00 4.04
7232 8035 6.866770 TCCTCGCTTTTATTGGATATAACTCG 59.133 38.462 0.00 0.00 0.00 4.18
7233 8036 8.088981 TCTCCTCGCTTTTATTGGATATAACTC 58.911 37.037 0.00 0.00 0.00 3.01
7234 8037 7.963532 TCTCCTCGCTTTTATTGGATATAACT 58.036 34.615 0.00 0.00 0.00 2.24
7235 8038 8.603242 TTCTCCTCGCTTTTATTGGATATAAC 57.397 34.615 0.00 0.00 0.00 1.89
7236 8039 7.387948 GCTTCTCCTCGCTTTTATTGGATATAA 59.612 37.037 0.00 0.00 0.00 0.98
7309 8112 7.286775 AGGAGAGAATACACAAAGAGAGGTATC 59.713 40.741 0.00 0.00 0.00 2.24
7326 8129 5.995282 CGTCTCAGTATCAGTAGGAGAGAAT 59.005 44.000 0.00 0.00 35.47 2.40
7538 8341 3.173151 TGAACATCCACTAGAGAAGCCA 58.827 45.455 0.00 0.00 0.00 4.75
7609 8419 0.846015 CATATTCCCCCTCCAGCACA 59.154 55.000 0.00 0.00 0.00 4.57
7613 8423 4.147321 CAACATTCATATTCCCCCTCCAG 58.853 47.826 0.00 0.00 0.00 3.86
7614 8424 3.691020 GCAACATTCATATTCCCCCTCCA 60.691 47.826 0.00 0.00 0.00 3.86
7629 8442 2.362077 GTCTCCCACACAAAGCAACATT 59.638 45.455 0.00 0.00 0.00 2.71
7656 8469 3.863142 AAGAATCAAAGATGCACCAGC 57.137 42.857 0.00 0.00 42.57 4.85
7658 8471 3.575256 AGCAAAGAATCAAAGATGCACCA 59.425 39.130 0.00 0.00 36.30 4.17
7815 8633 1.153353 ACCGCTTGTGTTATTGTCGG 58.847 50.000 0.00 0.00 40.98 4.79
7816 8634 4.493545 GGATTACCGCTTGTGTTATTGTCG 60.494 45.833 0.00 0.00 0.00 4.35
7817 8635 4.393680 TGGATTACCGCTTGTGTTATTGTC 59.606 41.667 0.00 0.00 39.42 3.18
7919 8746 3.524648 GACAAACCCGAGGTCGCCA 62.525 63.158 0.00 0.00 33.12 5.69
7920 8747 2.741211 GACAAACCCGAGGTCGCC 60.741 66.667 0.00 0.00 33.12 5.54
7950 8807 6.775142 ACAGCTATGCAGAGAGAAATCTAGTA 59.225 38.462 13.69 0.00 0.00 1.82
7952 8809 5.921976 CACAGCTATGCAGAGAGAAATCTAG 59.078 44.000 13.69 0.00 0.00 2.43
7977 8837 1.023513 AGATTCGCTGGCTGTTGAGC 61.024 55.000 0.00 0.00 45.40 4.26
7980 8840 0.449388 GGAAGATTCGCTGGCTGTTG 59.551 55.000 0.00 0.00 0.00 3.33
8023 8883 2.282462 AAGAAGCTTGGCACCGGG 60.282 61.111 2.10 0.00 0.00 5.73
8024 8884 2.335712 GGAAGAAGCTTGGCACCGG 61.336 63.158 2.10 0.00 0.00 5.28
8066 8926 1.873903 CGCTGGCTGTTAAGACACACT 60.874 52.381 0.00 0.00 36.11 3.55
8067 8927 0.512952 CGCTGGCTGTTAAGACACAC 59.487 55.000 0.00 0.00 36.11 3.82
8073 8933 2.482374 GCTGCGCTGGCTGTTAAG 59.518 61.111 16.47 0.00 39.98 1.85
8075 8935 4.020617 AGGCTGCGCTGGCTGTTA 62.021 61.111 36.32 0.56 41.44 2.41
8087 8947 3.197790 CGGTTGGATCGCAGGCTG 61.198 66.667 10.94 10.94 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.