Multiple sequence alignment - TraesCS3D01G499700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G499700 chr3D 100.000 2937 0 0 1 2937 589418886 589415950 0.000000e+00 5424.0
1 TraesCS3D01G499700 chr3D 83.440 1093 106 42 635 1679 589506500 589505435 0.000000e+00 946.0
2 TraesCS3D01G499700 chr3D 82.636 1123 119 38 809 1903 589573199 589572125 0.000000e+00 924.0
3 TraesCS3D01G499700 chr3D 86.198 768 70 21 883 1637 589433033 589432289 0.000000e+00 798.0
4 TraesCS3D01G499700 chr3D 88.348 575 56 9 1137 1706 589493180 589492612 0.000000e+00 680.0
5 TraesCS3D01G499700 chr3D 87.910 579 57 4 1137 1702 589426578 589426000 0.000000e+00 669.0
6 TraesCS3D01G499700 chr3D 83.988 331 46 5 2336 2663 448295831 448295505 7.900000e-81 311.0
7 TraesCS3D01G499700 chr3D 90.777 206 14 3 905 1108 589426781 589426579 1.340000e-68 270.0
8 TraesCS3D01G499700 chr3D 97.656 128 3 0 2209 2336 278512558 278512431 1.370000e-53 220.0
9 TraesCS3D01G499700 chr3D 95.312 128 6 0 2209 2336 407812520 407812393 1.380000e-48 204.0
10 TraesCS3D01G499700 chr3D 94.615 130 7 0 2209 2338 565200178 565200049 4.960000e-48 202.0
11 TraesCS3D01G499700 chr3D 94.615 130 7 0 2209 2338 565203678 565203549 4.960000e-48 202.0
12 TraesCS3D01G499700 chr3D 86.667 90 11 1 695 784 589437183 589437095 6.700000e-17 99.0
13 TraesCS3D01G499700 chr3A 84.126 1367 144 41 583 1912 719361359 719360029 0.000000e+00 1254.0
14 TraesCS3D01G499700 chr3A 85.532 940 100 21 820 1746 719337636 719336720 0.000000e+00 950.0
15 TraesCS3D01G499700 chr3A 89.011 728 63 12 966 1684 719350251 719349532 0.000000e+00 885.0
16 TraesCS3D01G499700 chr3A 83.547 468 41 14 661 1108 719354533 719354082 3.520000e-109 405.0
17 TraesCS3D01G499700 chr3A 96.610 59 2 0 1723 1781 719346424 719346366 6.700000e-17 99.0
18 TraesCS3D01G499700 chr3B 85.619 1203 116 30 719 1902 787989813 787990977 0.000000e+00 1210.0
19 TraesCS3D01G499700 chr3B 91.456 831 64 4 1137 1967 787472544 787473367 0.000000e+00 1134.0
20 TraesCS3D01G499700 chr3B 83.108 1255 147 31 711 1914 788074041 788072801 0.000000e+00 1083.0
21 TraesCS3D01G499700 chr3B 87.970 665 44 15 1422 2086 788055432 788054804 0.000000e+00 752.0
22 TraesCS3D01G499700 chr3B 83.113 758 78 22 363 1108 787471824 787472543 0.000000e+00 645.0
23 TraesCS3D01G499700 chr3B 85.172 580 80 6 2361 2937 828527016 828526440 9.070000e-165 590.0
24 TraesCS3D01G499700 chr3B 84.254 362 44 8 1555 1914 788067729 788067379 1.010000e-89 340.0
25 TraesCS3D01G499700 chr3B 95.890 73 1 1 237 309 756256731 756256661 1.850000e-22 117.0
26 TraesCS3D01G499700 chr6D 89.465 598 62 1 2336 2933 411813912 411814508 0.000000e+00 754.0
27 TraesCS3D01G499700 chr6D 86.899 603 75 4 2336 2937 421471376 421471975 0.000000e+00 673.0
28 TraesCS3D01G499700 chr6D 88.462 130 10 2 2089 2213 411813799 411813928 5.070000e-33 152.0
29 TraesCS3D01G499700 chr7D 86.116 605 77 6 2336 2937 150502915 150503515 0.000000e+00 645.0
30 TraesCS3D01G499700 chr7D 95.312 128 6 0 2209 2336 137849941 137849814 1.380000e-48 204.0
31 TraesCS3D01G499700 chr7D 95.312 128 5 1 2209 2336 107248218 107248344 4.960000e-48 202.0
32 TraesCS3D01G499700 chr7D 86.076 79 9 2 2774 2851 203456537 203456614 1.880000e-12 84.2
33 TraesCS3D01G499700 chr4A 85.906 596 82 2 2341 2936 211389337 211389930 4.130000e-178 634.0
34 TraesCS3D01G499700 chr6B 86.559 558 70 3 2382 2937 647164630 647164076 6.960000e-171 610.0
35 TraesCS3D01G499700 chr6B 88.112 286 33 1 2341 2626 694661172 694661456 3.630000e-89 339.0
36 TraesCS3D01G499700 chr6B 95.455 66 3 0 237 302 30021021 30020956 4.000000e-19 106.0
37 TraesCS3D01G499700 chr6B 94.286 70 1 3 237 303 30010440 30010509 1.440000e-18 104.0
38 TraesCS3D01G499700 chr5A 82.558 602 82 7 2336 2936 606696963 606697542 2.610000e-140 508.0
39 TraesCS3D01G499700 chr1D 96.875 128 3 1 2209 2336 206038594 206038468 2.290000e-51 213.0
40 TraesCS3D01G499700 chr1D 95.349 129 6 0 2209 2337 202282043 202281915 3.840000e-49 206.0
41 TraesCS3D01G499700 chr2B 93.333 135 7 2 2209 2341 18100940 18100806 6.420000e-47 198.0
42 TraesCS3D01G499700 chr7A 84.211 133 16 3 2085 2213 33879014 33879145 1.110000e-24 124.0
43 TraesCS3D01G499700 chr7A 100.000 59 0 0 237 295 135913010 135912952 3.090000e-20 110.0
44 TraesCS3D01G499700 chr7B 96.875 64 1 1 237 299 653874576 653874513 4.000000e-19 106.0
45 TraesCS3D01G499700 chr5B 96.721 61 0 1 237 295 458030018 458029958 1.860000e-17 100.0
46 TraesCS3D01G499700 chrUn 90.411 73 5 2 230 302 298949995 298950065 8.670000e-16 95.3
47 TraesCS3D01G499700 chrUn 90.411 73 5 2 230 302 298954819 298954889 8.670000e-16 95.3
48 TraesCS3D01G499700 chrUn 90.411 73 5 2 230 302 320779310 320779380 8.670000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G499700 chr3D 589415950 589418886 2936 True 5424.0 5424 100.000000 1 2937 1 chr3D.!!$R4 2936
1 TraesCS3D01G499700 chr3D 589505435 589506500 1065 True 946.0 946 83.440000 635 1679 1 chr3D.!!$R8 1044
2 TraesCS3D01G499700 chr3D 589572125 589573199 1074 True 924.0 924 82.636000 809 1903 1 chr3D.!!$R9 1094
3 TraesCS3D01G499700 chr3D 589432289 589433033 744 True 798.0 798 86.198000 883 1637 1 chr3D.!!$R5 754
4 TraesCS3D01G499700 chr3D 589492612 589493180 568 True 680.0 680 88.348000 1137 1706 1 chr3D.!!$R7 569
5 TraesCS3D01G499700 chr3D 589426000 589426781 781 True 469.5 669 89.343500 905 1702 2 chr3D.!!$R11 797
6 TraesCS3D01G499700 chr3D 565200049 565203678 3629 True 202.0 202 94.615000 2209 2338 2 chr3D.!!$R10 129
7 TraesCS3D01G499700 chr3A 719360029 719361359 1330 True 1254.0 1254 84.126000 583 1912 1 chr3A.!!$R2 1329
8 TraesCS3D01G499700 chr3A 719336720 719337636 916 True 950.0 950 85.532000 820 1746 1 chr3A.!!$R1 926
9 TraesCS3D01G499700 chr3A 719346366 719354533 8167 True 463.0 885 89.722667 661 1781 3 chr3A.!!$R3 1120
10 TraesCS3D01G499700 chr3B 787989813 787990977 1164 False 1210.0 1210 85.619000 719 1902 1 chr3B.!!$F1 1183
11 TraesCS3D01G499700 chr3B 788072801 788074041 1240 True 1083.0 1083 83.108000 711 1914 1 chr3B.!!$R4 1203
12 TraesCS3D01G499700 chr3B 787471824 787473367 1543 False 889.5 1134 87.284500 363 1967 2 chr3B.!!$F2 1604
13 TraesCS3D01G499700 chr3B 788054804 788055432 628 True 752.0 752 87.970000 1422 2086 1 chr3B.!!$R2 664
14 TraesCS3D01G499700 chr3B 828526440 828527016 576 True 590.0 590 85.172000 2361 2937 1 chr3B.!!$R5 576
15 TraesCS3D01G499700 chr6D 421471376 421471975 599 False 673.0 673 86.899000 2336 2937 1 chr6D.!!$F1 601
16 TraesCS3D01G499700 chr6D 411813799 411814508 709 False 453.0 754 88.963500 2089 2933 2 chr6D.!!$F2 844
17 TraesCS3D01G499700 chr7D 150502915 150503515 600 False 645.0 645 86.116000 2336 2937 1 chr7D.!!$F2 601
18 TraesCS3D01G499700 chr4A 211389337 211389930 593 False 634.0 634 85.906000 2341 2936 1 chr4A.!!$F1 595
19 TraesCS3D01G499700 chr6B 647164076 647164630 554 True 610.0 610 86.559000 2382 2937 1 chr6B.!!$R2 555
20 TraesCS3D01G499700 chr5A 606696963 606697542 579 False 508.0 508 82.558000 2336 2936 1 chr5A.!!$F1 600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
783 799 0.037326 TCGCCGTGCTTTTCTCATCT 60.037 50.0 0.00 0.00 0.0 2.90 F
807 827 1.129326 GAATCATCTCGGCCGTTACG 58.871 55.0 27.15 12.89 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1664 1794 0.086901 CGAACGAACGAACGAACGAG 59.913 55.0 18.31 6.3 37.45 4.18 R
2806 7535 0.033796 TGGTAAGGGAGGATCGACGT 60.034 55.0 0.00 0.0 34.37 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.489771 CCCCGCACCCCTCATCAC 62.490 72.222 0.00 0.00 0.00 3.06
25 26 3.402681 CCCGCACCCCTCATCACT 61.403 66.667 0.00 0.00 0.00 3.41
26 27 2.187946 CCGCACCCCTCATCACTC 59.812 66.667 0.00 0.00 0.00 3.51
27 28 2.362369 CCGCACCCCTCATCACTCT 61.362 63.158 0.00 0.00 0.00 3.24
28 29 1.153489 CGCACCCCTCATCACTCTG 60.153 63.158 0.00 0.00 0.00 3.35
29 30 1.892819 CGCACCCCTCATCACTCTGT 61.893 60.000 0.00 0.00 0.00 3.41
30 31 0.107945 GCACCCCTCATCACTCTGTC 60.108 60.000 0.00 0.00 0.00 3.51
31 32 1.269958 CACCCCTCATCACTCTGTCA 58.730 55.000 0.00 0.00 0.00 3.58
32 33 1.625315 CACCCCTCATCACTCTGTCAA 59.375 52.381 0.00 0.00 0.00 3.18
33 34 2.238144 CACCCCTCATCACTCTGTCAAT 59.762 50.000 0.00 0.00 0.00 2.57
34 35 2.238144 ACCCCTCATCACTCTGTCAATG 59.762 50.000 0.00 0.00 0.00 2.82
35 36 2.238144 CCCCTCATCACTCTGTCAATGT 59.762 50.000 0.00 0.00 0.00 2.71
36 37 3.529533 CCCTCATCACTCTGTCAATGTC 58.470 50.000 0.00 0.00 0.00 3.06
37 38 3.529533 CCTCATCACTCTGTCAATGTCC 58.470 50.000 0.00 0.00 0.00 4.02
38 39 3.055602 CCTCATCACTCTGTCAATGTCCA 60.056 47.826 0.00 0.00 0.00 4.02
39 40 3.930336 TCATCACTCTGTCAATGTCCAC 58.070 45.455 0.00 0.00 0.00 4.02
40 41 2.839486 TCACTCTGTCAATGTCCACC 57.161 50.000 0.00 0.00 0.00 4.61
41 42 1.347707 TCACTCTGTCAATGTCCACCC 59.652 52.381 0.00 0.00 0.00 4.61
42 43 1.349026 CACTCTGTCAATGTCCACCCT 59.651 52.381 0.00 0.00 0.00 4.34
43 44 1.625818 ACTCTGTCAATGTCCACCCTC 59.374 52.381 0.00 0.00 0.00 4.30
44 45 1.905215 CTCTGTCAATGTCCACCCTCT 59.095 52.381 0.00 0.00 0.00 3.69
45 46 1.902508 TCTGTCAATGTCCACCCTCTC 59.097 52.381 0.00 0.00 0.00 3.20
46 47 0.608130 TGTCAATGTCCACCCTCTCG 59.392 55.000 0.00 0.00 0.00 4.04
47 48 0.108138 GTCAATGTCCACCCTCTCGG 60.108 60.000 0.00 0.00 37.81 4.63
48 49 1.450312 CAATGTCCACCCTCTCGGC 60.450 63.158 0.00 0.00 33.26 5.54
49 50 1.613630 AATGTCCACCCTCTCGGCT 60.614 57.895 0.00 0.00 33.26 5.52
50 51 1.617947 AATGTCCACCCTCTCGGCTC 61.618 60.000 0.00 0.00 33.26 4.70
51 52 2.680352 GTCCACCCTCTCGGCTCA 60.680 66.667 0.00 0.00 33.26 4.26
52 53 2.680352 TCCACCCTCTCGGCTCAC 60.680 66.667 0.00 0.00 33.26 3.51
53 54 3.775654 CCACCCTCTCGGCTCACC 61.776 72.222 0.00 0.00 33.26 4.02
54 55 2.997315 CACCCTCTCGGCTCACCA 60.997 66.667 0.00 0.00 34.57 4.17
55 56 2.681778 ACCCTCTCGGCTCACCAG 60.682 66.667 0.00 0.00 34.57 4.00
56 57 4.154347 CCCTCTCGGCTCACCAGC 62.154 72.222 0.00 0.00 46.06 4.85
64 65 3.755434 GCTCACCAGCAGCTTTGT 58.245 55.556 0.00 0.00 46.06 2.83
65 66 1.578423 GCTCACCAGCAGCTTTGTC 59.422 57.895 0.00 0.00 46.06 3.18
66 67 1.168407 GCTCACCAGCAGCTTTGTCA 61.168 55.000 0.00 0.00 46.06 3.58
67 68 0.873054 CTCACCAGCAGCTTTGTCAG 59.127 55.000 0.00 0.00 0.00 3.51
68 69 0.469494 TCACCAGCAGCTTTGTCAGA 59.531 50.000 0.00 0.00 0.00 3.27
69 70 1.072806 TCACCAGCAGCTTTGTCAGAT 59.927 47.619 0.00 0.00 0.00 2.90
70 71 2.302733 TCACCAGCAGCTTTGTCAGATA 59.697 45.455 0.00 0.00 0.00 1.98
71 72 3.076621 CACCAGCAGCTTTGTCAGATAA 58.923 45.455 0.00 0.00 0.00 1.75
72 73 3.693085 CACCAGCAGCTTTGTCAGATAAT 59.307 43.478 0.00 0.00 0.00 1.28
73 74 4.157289 CACCAGCAGCTTTGTCAGATAATT 59.843 41.667 0.00 0.00 0.00 1.40
74 75 5.355071 CACCAGCAGCTTTGTCAGATAATTA 59.645 40.000 0.00 0.00 0.00 1.40
75 76 5.945784 ACCAGCAGCTTTGTCAGATAATTAA 59.054 36.000 0.00 0.00 0.00 1.40
76 77 6.604795 ACCAGCAGCTTTGTCAGATAATTAAT 59.395 34.615 0.00 0.00 0.00 1.40
77 78 7.137426 CCAGCAGCTTTGTCAGATAATTAATC 58.863 38.462 0.00 0.00 34.52 1.75
78 79 7.137426 CAGCAGCTTTGTCAGATAATTAATCC 58.863 38.462 0.00 0.00 34.90 3.01
79 80 7.013083 CAGCAGCTTTGTCAGATAATTAATCCT 59.987 37.037 0.00 0.00 34.90 3.24
80 81 8.213679 AGCAGCTTTGTCAGATAATTAATCCTA 58.786 33.333 0.00 0.00 34.90 2.94
81 82 8.840321 GCAGCTTTGTCAGATAATTAATCCTAA 58.160 33.333 0.00 0.00 34.90 2.69
111 112 3.455619 CAAGCTATTGTTCTTTCGCGT 57.544 42.857 5.77 0.00 0.00 6.01
112 113 3.408150 CAAGCTATTGTTCTTTCGCGTC 58.592 45.455 5.77 0.00 0.00 5.19
113 114 2.683968 AGCTATTGTTCTTTCGCGTCA 58.316 42.857 5.77 0.00 0.00 4.35
114 115 2.412089 AGCTATTGTTCTTTCGCGTCAC 59.588 45.455 5.77 0.00 0.00 3.67
115 116 2.474032 GCTATTGTTCTTTCGCGTCACC 60.474 50.000 5.77 0.00 0.00 4.02
116 117 1.588674 ATTGTTCTTTCGCGTCACCA 58.411 45.000 5.77 0.00 0.00 4.17
117 118 1.588674 TTGTTCTTTCGCGTCACCAT 58.411 45.000 5.77 0.00 0.00 3.55
118 119 1.588674 TGTTCTTTCGCGTCACCATT 58.411 45.000 5.77 0.00 0.00 3.16
119 120 1.944024 TGTTCTTTCGCGTCACCATTT 59.056 42.857 5.77 0.00 0.00 2.32
120 121 2.286713 TGTTCTTTCGCGTCACCATTTG 60.287 45.455 5.77 0.00 0.00 2.32
121 122 1.588674 TCTTTCGCGTCACCATTTGT 58.411 45.000 5.77 0.00 0.00 2.83
122 123 1.529438 TCTTTCGCGTCACCATTTGTC 59.471 47.619 5.77 0.00 0.00 3.18
123 124 0.233590 TTTCGCGTCACCATTTGTCG 59.766 50.000 5.77 0.00 39.44 4.35
127 128 3.294908 CGTCACCATTTGTCGCATG 57.705 52.632 0.00 0.00 30.04 4.06
128 129 0.795698 CGTCACCATTTGTCGCATGA 59.204 50.000 0.00 0.00 30.04 3.07
129 130 1.201954 CGTCACCATTTGTCGCATGAG 60.202 52.381 0.00 0.00 30.04 2.90
130 131 0.804364 TCACCATTTGTCGCATGAGC 59.196 50.000 0.00 0.00 37.42 4.26
131 132 0.522626 CACCATTTGTCGCATGAGCA 59.477 50.000 0.00 0.00 42.27 4.26
132 133 1.068402 CACCATTTGTCGCATGAGCAA 60.068 47.619 0.00 0.00 42.27 3.91
133 134 1.200716 ACCATTTGTCGCATGAGCAAG 59.799 47.619 0.00 0.00 42.27 4.01
134 135 1.265568 CATTTGTCGCATGAGCAAGC 58.734 50.000 0.00 0.00 42.27 4.01
135 136 0.171903 ATTTGTCGCATGAGCAAGCC 59.828 50.000 0.00 0.00 42.27 4.35
136 137 0.890542 TTTGTCGCATGAGCAAGCCT 60.891 50.000 0.00 0.00 42.27 4.58
137 138 1.579964 TTGTCGCATGAGCAAGCCTG 61.580 55.000 0.00 0.00 42.27 4.85
138 139 2.437180 TCGCATGAGCAAGCCTGG 60.437 61.111 0.00 0.00 42.27 4.45
139 140 2.437180 CGCATGAGCAAGCCTGGA 60.437 61.111 0.00 0.00 42.27 3.86
140 141 2.042259 CGCATGAGCAAGCCTGGAA 61.042 57.895 0.00 0.00 42.27 3.53
141 142 1.509923 GCATGAGCAAGCCTGGAAC 59.490 57.895 0.00 0.00 41.58 3.62
142 143 1.246056 GCATGAGCAAGCCTGGAACA 61.246 55.000 0.00 0.00 41.58 3.18
143 144 1.250328 CATGAGCAAGCCTGGAACAA 58.750 50.000 0.00 0.00 38.70 2.83
144 145 1.201647 CATGAGCAAGCCTGGAACAAG 59.798 52.381 0.00 0.00 38.70 3.16
145 146 0.473755 TGAGCAAGCCTGGAACAAGA 59.526 50.000 0.00 0.00 38.70 3.02
146 147 1.133823 TGAGCAAGCCTGGAACAAGAA 60.134 47.619 0.00 0.00 38.70 2.52
147 148 2.165998 GAGCAAGCCTGGAACAAGAAT 58.834 47.619 0.00 0.00 38.70 2.40
148 149 2.163211 GAGCAAGCCTGGAACAAGAATC 59.837 50.000 0.00 0.00 38.70 2.52
149 150 1.888512 GCAAGCCTGGAACAAGAATCA 59.111 47.619 0.00 0.00 38.70 2.57
150 151 2.352127 GCAAGCCTGGAACAAGAATCAC 60.352 50.000 0.00 0.00 38.70 3.06
151 152 3.152341 CAAGCCTGGAACAAGAATCACT 58.848 45.455 0.00 0.00 38.70 3.41
152 153 3.064900 AGCCTGGAACAAGAATCACTC 57.935 47.619 0.00 0.00 38.70 3.51
153 154 1.734465 GCCTGGAACAAGAATCACTCG 59.266 52.381 0.00 0.00 38.70 4.18
154 155 2.350522 CCTGGAACAAGAATCACTCGG 58.649 52.381 0.00 0.00 38.70 4.63
155 156 2.289694 CCTGGAACAAGAATCACTCGGT 60.290 50.000 0.00 0.00 38.70 4.69
156 157 3.403038 CTGGAACAAGAATCACTCGGTT 58.597 45.455 0.00 0.00 38.70 4.44
157 158 3.815401 CTGGAACAAGAATCACTCGGTTT 59.185 43.478 0.00 0.00 38.70 3.27
158 159 3.813166 TGGAACAAGAATCACTCGGTTTC 59.187 43.478 0.00 0.00 31.92 2.78
159 160 3.188667 GGAACAAGAATCACTCGGTTTCC 59.811 47.826 0.00 0.00 0.00 3.13
160 161 3.771577 ACAAGAATCACTCGGTTTCCT 57.228 42.857 0.00 0.00 0.00 3.36
161 162 3.665190 ACAAGAATCACTCGGTTTCCTC 58.335 45.455 0.00 0.00 0.00 3.71
162 163 3.003480 CAAGAATCACTCGGTTTCCTCC 58.997 50.000 0.00 0.00 0.00 4.30
163 164 2.257207 AGAATCACTCGGTTTCCTCCA 58.743 47.619 0.00 0.00 0.00 3.86
164 165 2.028020 AGAATCACTCGGTTTCCTCCAC 60.028 50.000 0.00 0.00 0.00 4.02
165 166 0.246635 ATCACTCGGTTTCCTCCACG 59.753 55.000 0.00 0.00 0.00 4.94
166 167 1.374252 CACTCGGTTTCCTCCACGG 60.374 63.158 0.00 0.00 0.00 4.94
167 168 2.264794 CTCGGTTTCCTCCACGGG 59.735 66.667 0.00 0.00 0.00 5.28
168 169 3.310860 CTCGGTTTCCTCCACGGGG 62.311 68.421 0.00 0.00 0.00 5.73
169 170 3.633116 CGGTTTCCTCCACGGGGT 61.633 66.667 2.12 0.00 34.93 4.95
170 171 2.350134 GGTTTCCTCCACGGGGTC 59.650 66.667 2.12 0.00 34.93 4.46
171 172 2.522367 GGTTTCCTCCACGGGGTCA 61.522 63.158 2.12 0.00 34.93 4.02
172 173 1.302271 GTTTCCTCCACGGGGTCAC 60.302 63.158 2.12 0.00 34.93 3.67
173 174 1.766864 TTTCCTCCACGGGGTCACA 60.767 57.895 2.12 0.00 34.93 3.58
174 175 1.346479 TTTCCTCCACGGGGTCACAA 61.346 55.000 2.12 0.00 34.93 3.33
175 176 1.346479 TTCCTCCACGGGGTCACAAA 61.346 55.000 2.12 0.00 34.93 2.83
176 177 1.131303 TCCTCCACGGGGTCACAAAT 61.131 55.000 2.12 0.00 34.93 2.32
177 178 0.616371 CCTCCACGGGGTCACAAATA 59.384 55.000 2.12 0.00 34.93 1.40
178 179 1.211949 CCTCCACGGGGTCACAAATAT 59.788 52.381 2.12 0.00 34.93 1.28
179 180 2.436542 CCTCCACGGGGTCACAAATATA 59.563 50.000 2.12 0.00 34.93 0.86
180 181 3.494398 CCTCCACGGGGTCACAAATATAG 60.494 52.174 2.12 0.00 34.93 1.31
181 182 3.109151 TCCACGGGGTCACAAATATAGT 58.891 45.455 2.12 0.00 34.93 2.12
182 183 3.118555 TCCACGGGGTCACAAATATAGTG 60.119 47.826 2.12 2.61 38.32 2.74
183 184 2.612212 CACGGGGTCACAAATATAGTGC 59.388 50.000 3.90 0.78 36.93 4.40
184 185 2.504175 ACGGGGTCACAAATATAGTGCT 59.496 45.455 3.90 0.00 36.93 4.40
185 186 3.707611 ACGGGGTCACAAATATAGTGCTA 59.292 43.478 3.90 0.00 36.93 3.49
186 187 4.347000 ACGGGGTCACAAATATAGTGCTAT 59.653 41.667 3.90 0.00 36.93 2.97
187 188 5.163237 ACGGGGTCACAAATATAGTGCTATT 60.163 40.000 3.90 0.00 36.93 1.73
188 189 5.763204 CGGGGTCACAAATATAGTGCTATTT 59.237 40.000 3.90 0.00 36.93 1.40
189 190 6.293407 CGGGGTCACAAATATAGTGCTATTTG 60.293 42.308 12.28 12.28 46.98 2.32
197 198 8.931385 CAAATATAGTGCTATTTGTTGGCTTT 57.069 30.769 7.62 0.00 41.21 3.51
200 201 9.627123 AATATAGTGCTATTTGTTGGCTTTAGA 57.373 29.630 0.00 0.00 32.01 2.10
201 202 9.799106 ATATAGTGCTATTTGTTGGCTTTAGAT 57.201 29.630 0.00 0.00 32.01 1.98
202 203 6.199937 AGTGCTATTTGTTGGCTTTAGATG 57.800 37.500 0.00 0.00 32.01 2.90
203 204 5.711976 AGTGCTATTTGTTGGCTTTAGATGT 59.288 36.000 0.00 0.00 32.01 3.06
204 205 5.801947 GTGCTATTTGTTGGCTTTAGATGTG 59.198 40.000 0.00 0.00 32.01 3.21
205 206 5.105797 TGCTATTTGTTGGCTTTAGATGTGG 60.106 40.000 0.00 0.00 32.01 4.17
206 207 5.125417 GCTATTTGTTGGCTTTAGATGTGGA 59.875 40.000 0.00 0.00 0.00 4.02
207 208 4.846779 TTTGTTGGCTTTAGATGTGGAC 57.153 40.909 0.00 0.00 0.00 4.02
208 209 3.500448 TGTTGGCTTTAGATGTGGACA 57.500 42.857 0.00 0.00 0.00 4.02
209 210 4.032960 TGTTGGCTTTAGATGTGGACAT 57.967 40.909 0.00 0.00 39.70 3.06
210 211 5.172687 TGTTGGCTTTAGATGTGGACATA 57.827 39.130 0.00 0.00 36.57 2.29
211 212 5.185454 TGTTGGCTTTAGATGTGGACATAG 58.815 41.667 0.00 0.00 36.57 2.23
212 213 5.186198 GTTGGCTTTAGATGTGGACATAGT 58.814 41.667 0.00 0.00 36.57 2.12
213 214 5.023533 TGGCTTTAGATGTGGACATAGTC 57.976 43.478 0.00 0.00 36.57 2.59
214 215 4.716784 TGGCTTTAGATGTGGACATAGTCT 59.283 41.667 0.00 0.00 36.57 3.24
215 216 5.163405 TGGCTTTAGATGTGGACATAGTCTC 60.163 44.000 0.00 0.00 36.57 3.36
216 217 5.293560 GCTTTAGATGTGGACATAGTCTCC 58.706 45.833 0.00 0.00 36.57 3.71
217 218 5.163405 GCTTTAGATGTGGACATAGTCTCCA 60.163 44.000 0.00 0.00 36.57 3.86
218 219 6.471233 TTTAGATGTGGACATAGTCTCCAG 57.529 41.667 0.00 0.00 38.54 3.86
219 220 3.303938 AGATGTGGACATAGTCTCCAGG 58.696 50.000 0.00 0.00 38.54 4.45
220 221 2.919772 TGTGGACATAGTCTCCAGGA 57.080 50.000 0.00 0.00 38.54 3.86
221 222 3.404869 TGTGGACATAGTCTCCAGGAT 57.595 47.619 0.00 0.00 38.54 3.24
222 223 3.033909 TGTGGACATAGTCTCCAGGATG 58.966 50.000 0.00 0.00 38.54 3.51
223 224 3.034635 GTGGACATAGTCTCCAGGATGT 58.965 50.000 0.00 0.00 38.54 3.06
224 225 4.215908 GTGGACATAGTCTCCAGGATGTA 58.784 47.826 0.00 0.00 38.54 2.29
225 226 4.649674 GTGGACATAGTCTCCAGGATGTAA 59.350 45.833 0.00 0.00 38.54 2.41
226 227 5.305644 GTGGACATAGTCTCCAGGATGTAAT 59.694 44.000 0.00 0.00 38.54 1.89
227 228 5.905331 TGGACATAGTCTCCAGGATGTAATT 59.095 40.000 0.00 0.00 32.52 1.40
228 229 6.386927 TGGACATAGTCTCCAGGATGTAATTT 59.613 38.462 0.00 0.00 32.52 1.82
229 230 7.092444 TGGACATAGTCTCCAGGATGTAATTTT 60.092 37.037 0.00 0.00 32.52 1.82
230 231 7.775561 GGACATAGTCTCCAGGATGTAATTTTT 59.224 37.037 0.00 0.00 32.75 1.94
254 255 9.762381 TTTTGTTAGAAATGTCCATATTACCCT 57.238 29.630 0.00 0.00 0.00 4.34
255 256 9.762381 TTTGTTAGAAATGTCCATATTACCCTT 57.238 29.630 0.00 0.00 0.00 3.95
256 257 9.762381 TTGTTAGAAATGTCCATATTACCCTTT 57.238 29.630 0.00 0.00 0.00 3.11
261 262 9.720769 AGAAATGTCCATATTACCCTTTATACG 57.279 33.333 0.00 0.00 0.00 3.06
262 263 9.498176 GAAATGTCCATATTACCCTTTATACGT 57.502 33.333 0.00 0.00 0.00 3.57
266 267 9.932207 TGTCCATATTACCCTTTATACGTATTG 57.068 33.333 14.33 4.82 0.00 1.90
267 268 8.876790 GTCCATATTACCCTTTATACGTATTGC 58.123 37.037 14.33 0.00 0.00 3.56
269 270 7.760794 CCATATTACCCTTTATACGTATTGCGA 59.239 37.037 14.33 0.00 44.77 5.10
270 271 8.804743 CATATTACCCTTTATACGTATTGCGAG 58.195 37.037 14.33 6.77 44.77 5.03
271 272 3.986277 ACCCTTTATACGTATTGCGAGG 58.014 45.455 14.33 14.37 44.77 4.63
272 273 3.323243 CCCTTTATACGTATTGCGAGGG 58.677 50.000 14.33 18.70 44.77 4.30
273 274 3.323243 CCTTTATACGTATTGCGAGGGG 58.677 50.000 14.33 3.66 44.77 4.79
274 275 3.323243 CTTTATACGTATTGCGAGGGGG 58.677 50.000 14.33 0.00 44.77 5.40
288 289 2.435410 GGGGGTTGTACCGAAGCG 60.435 66.667 0.00 0.00 39.83 4.68
298 299 4.617875 CCGAAGCGGGACTCAATT 57.382 55.556 0.00 0.00 44.15 2.32
299 300 2.854522 CCGAAGCGGGACTCAATTT 58.145 52.632 0.00 0.00 44.15 1.82
300 301 1.165270 CCGAAGCGGGACTCAATTTT 58.835 50.000 0.00 0.00 44.15 1.82
301 302 1.539827 CCGAAGCGGGACTCAATTTTT 59.460 47.619 0.00 0.00 44.15 1.94
325 326 8.763049 TTTGTTGTTGTTTCATTGTATTCACA 57.237 26.923 0.00 0.00 0.00 3.58
326 327 7.748031 TGTTGTTGTTTCATTGTATTCACAC 57.252 32.000 0.00 0.00 33.30 3.82
327 328 6.470556 TGTTGTTGTTTCATTGTATTCACACG 59.529 34.615 0.00 0.00 33.30 4.49
328 329 4.973051 TGTTGTTTCATTGTATTCACACGC 59.027 37.500 0.00 0.00 33.30 5.34
329 330 5.212194 GTTGTTTCATTGTATTCACACGCT 58.788 37.500 0.00 0.00 33.30 5.07
330 331 6.017852 TGTTGTTTCATTGTATTCACACGCTA 60.018 34.615 0.00 0.00 33.30 4.26
331 332 6.164408 TGTTTCATTGTATTCACACGCTAG 57.836 37.500 0.00 0.00 33.30 3.42
332 333 5.699001 TGTTTCATTGTATTCACACGCTAGT 59.301 36.000 0.00 0.00 33.30 2.57
333 334 6.869388 TGTTTCATTGTATTCACACGCTAGTA 59.131 34.615 0.00 0.00 33.30 1.82
334 335 6.880822 TTCATTGTATTCACACGCTAGTAC 57.119 37.500 0.00 0.00 33.30 2.73
335 336 5.956642 TCATTGTATTCACACGCTAGTACA 58.043 37.500 0.00 0.00 33.30 2.90
336 337 6.391537 TCATTGTATTCACACGCTAGTACAA 58.608 36.000 0.00 0.00 36.74 2.41
337 338 6.530181 TCATTGTATTCACACGCTAGTACAAG 59.470 38.462 0.00 0.00 36.05 3.16
338 339 5.381174 TGTATTCACACGCTAGTACAAGT 57.619 39.130 0.00 0.00 0.00 3.16
339 340 5.775686 TGTATTCACACGCTAGTACAAGTT 58.224 37.500 0.00 0.00 0.00 2.66
340 341 6.912082 TGTATTCACACGCTAGTACAAGTTA 58.088 36.000 0.00 0.00 0.00 2.24
341 342 7.541162 TGTATTCACACGCTAGTACAAGTTAT 58.459 34.615 0.00 0.00 0.00 1.89
342 343 8.030692 TGTATTCACACGCTAGTACAAGTTATT 58.969 33.333 0.00 0.00 0.00 1.40
343 344 9.507280 GTATTCACACGCTAGTACAAGTTATTA 57.493 33.333 0.00 0.00 0.00 0.98
345 346 8.991243 TTCACACGCTAGTACAAGTTATTATT 57.009 30.769 0.00 0.00 0.00 1.40
399 400 5.982890 ATCTGAAACAAGGTAAATGGTGG 57.017 39.130 0.00 0.00 0.00 4.61
400 401 4.798882 TCTGAAACAAGGTAAATGGTGGT 58.201 39.130 0.00 0.00 0.00 4.16
401 402 4.582656 TCTGAAACAAGGTAAATGGTGGTG 59.417 41.667 0.00 0.00 0.00 4.17
402 403 4.282496 TGAAACAAGGTAAATGGTGGTGT 58.718 39.130 0.00 0.00 0.00 4.16
405 406 3.486383 ACAAGGTAAATGGTGGTGTCAG 58.514 45.455 0.00 0.00 0.00 3.51
415 416 2.306847 GGTGGTGTCAGAAAACATGGT 58.693 47.619 0.00 0.00 0.00 3.55
417 418 3.252458 GGTGGTGTCAGAAAACATGGTAC 59.748 47.826 0.00 0.00 0.00 3.34
419 420 3.181464 TGGTGTCAGAAAACATGGTACGA 60.181 43.478 0.00 0.00 0.00 3.43
424 425 5.995282 TGTCAGAAAACATGGTACGAATCTT 59.005 36.000 0.00 0.00 0.00 2.40
432 433 6.811253 ACATGGTACGAATCTTAAAGCAAA 57.189 33.333 0.00 0.00 0.00 3.68
434 435 5.291293 TGGTACGAATCTTAAAGCAAAGC 57.709 39.130 0.00 0.00 0.00 3.51
482 484 5.338632 TCACTATGGAAGAGGTGGAACTTA 58.661 41.667 0.00 0.00 36.74 2.24
486 488 2.026262 TGGAAGAGGTGGAACTTATGCC 60.026 50.000 0.00 0.00 36.74 4.40
534 539 4.122046 GCATTAGCATTCCCAATCAAACC 58.878 43.478 0.00 0.00 41.58 3.27
535 540 4.141869 GCATTAGCATTCCCAATCAAACCT 60.142 41.667 0.00 0.00 41.58 3.50
536 541 5.627503 GCATTAGCATTCCCAATCAAACCTT 60.628 40.000 0.00 0.00 41.58 3.50
537 542 6.408869 CATTAGCATTCCCAATCAAACCTTT 58.591 36.000 0.00 0.00 0.00 3.11
538 543 4.276058 AGCATTCCCAATCAAACCTTTG 57.724 40.909 0.00 0.00 39.48 2.77
539 544 3.008266 AGCATTCCCAATCAAACCTTTGG 59.992 43.478 0.00 0.00 41.71 3.28
540 545 3.337358 CATTCCCAATCAAACCTTTGGC 58.663 45.455 0.00 0.00 40.89 4.52
541 546 2.094100 TCCCAATCAAACCTTTGGCA 57.906 45.000 0.00 0.00 40.89 4.92
542 547 2.402564 TCCCAATCAAACCTTTGGCAA 58.597 42.857 0.00 0.00 40.89 4.52
543 548 2.774234 TCCCAATCAAACCTTTGGCAAA 59.226 40.909 12.79 12.79 40.89 3.68
544 549 3.393941 TCCCAATCAAACCTTTGGCAAAT 59.606 39.130 13.89 0.00 40.89 2.32
545 550 3.502979 CCCAATCAAACCTTTGGCAAATG 59.497 43.478 13.89 13.29 40.89 2.32
546 551 3.058085 CCAATCAAACCTTTGGCAAATGC 60.058 43.478 13.89 0.00 36.28 3.56
587 592 1.873591 GGCAAATACTACCGCTCCATG 59.126 52.381 0.00 0.00 0.00 3.66
589 594 2.560504 CAAATACTACCGCTCCATGCA 58.439 47.619 0.00 0.00 43.06 3.96
625 630 0.877071 GGCGACATGGCATGAATAGG 59.123 55.000 32.74 16.56 44.08 2.57
627 632 2.430465 GCGACATGGCATGAATAGGAT 58.570 47.619 32.74 9.40 0.00 3.24
701 710 2.126965 CGTGACTCCGACGTCCAC 60.127 66.667 10.58 10.65 32.97 4.02
753 762 1.957186 CCGAACTTTTCCGTCGCCA 60.957 57.895 0.00 0.00 0.00 5.69
766 775 1.606606 GTCGCCAAAGCAGATTTTCG 58.393 50.000 0.00 0.00 39.83 3.46
773 782 1.237285 AAGCAGATTTTCGCCGTGCT 61.237 50.000 0.00 0.00 46.35 4.40
776 785 1.930371 GCAGATTTTCGCCGTGCTTTT 60.930 47.619 0.00 0.00 0.00 2.27
778 787 1.880027 AGATTTTCGCCGTGCTTTTCT 59.120 42.857 0.00 0.00 0.00 2.52
780 789 1.018148 TTTTCGCCGTGCTTTTCTCA 58.982 45.000 0.00 0.00 0.00 3.27
783 799 0.037326 TCGCCGTGCTTTTCTCATCT 60.037 50.000 0.00 0.00 0.00 2.90
784 800 1.203758 TCGCCGTGCTTTTCTCATCTA 59.796 47.619 0.00 0.00 0.00 1.98
804 824 3.669354 GAGAATCATCTCGGCCGTT 57.331 52.632 27.15 11.07 42.54 4.44
805 825 2.795175 GAGAATCATCTCGGCCGTTA 57.205 50.000 27.15 15.12 42.54 3.18
806 826 2.395654 GAGAATCATCTCGGCCGTTAC 58.604 52.381 27.15 9.09 42.54 2.50
807 827 1.129326 GAATCATCTCGGCCGTTACG 58.871 55.000 27.15 12.89 0.00 3.18
847 881 1.755179 CTTCGCATCCATTTCCTGGT 58.245 50.000 0.00 0.00 46.08 4.00
898 943 5.395768 CCACCTAGAAGAATAACCTCCTGTG 60.396 48.000 0.00 0.00 0.00 3.66
1101 1164 2.943690 CAGGCAGGATCAAGATCAACTG 59.056 50.000 11.78 10.91 39.54 3.16
1126 1192 5.351948 AAAGTCTTATCAAGAGCCTCTCC 57.648 43.478 0.00 0.00 38.41 3.71
1128 1194 3.960102 AGTCTTATCAAGAGCCTCTCCAG 59.040 47.826 0.00 0.00 38.41 3.86
1157 1248 3.118454 CGGCGAGAATGGTTGCGT 61.118 61.111 0.00 0.00 0.00 5.24
1162 1253 1.334599 GCGAGAATGGTTGCGTCAAAA 60.335 47.619 0.00 0.00 0.00 2.44
1204 1295 2.982130 GCGTCACTGGACCAGGAT 59.018 61.111 25.34 2.28 41.13 3.24
1469 1575 3.469970 AGGGATGCATCACGCCGA 61.470 61.111 27.25 0.00 41.33 5.54
1474 1580 3.315142 ATGCATCACGCCGACCAGT 62.315 57.895 0.00 0.00 41.33 4.00
1631 1743 1.168407 CGCCTGGACCCAAGCATATG 61.168 60.000 9.97 0.00 33.31 1.78
1661 1791 3.650070 TCGTCTTGCATATAGCTCCTG 57.350 47.619 0.00 0.00 45.94 3.86
1663 1793 2.546584 CGTCTTGCATATAGCTCCTGCA 60.547 50.000 12.27 12.27 45.94 4.41
1664 1794 2.805099 GTCTTGCATATAGCTCCTGCAC 59.195 50.000 15.06 3.71 44.94 4.57
1665 1795 2.702478 TCTTGCATATAGCTCCTGCACT 59.298 45.455 15.06 0.00 44.94 4.40
1666 1796 2.827800 TGCATATAGCTCCTGCACTC 57.172 50.000 12.27 0.00 45.94 3.51
1667 1797 1.000171 TGCATATAGCTCCTGCACTCG 60.000 52.381 12.27 0.00 45.94 4.18
1668 1798 1.000283 GCATATAGCTCCTGCACTCGT 60.000 52.381 9.49 0.00 42.74 4.18
1669 1799 2.546795 GCATATAGCTCCTGCACTCGTT 60.547 50.000 9.49 0.00 42.74 3.85
1702 1832 6.089685 TCGTTCGTTCATTCGTTCATTCATTA 59.910 34.615 0.00 0.00 0.00 1.90
1707 1857 9.308318 TCGTTCATTCGTTCATTCATTAGATTA 57.692 29.630 0.00 0.00 0.00 1.75
1781 1951 7.275183 TGATCTATGTGAATACCTTTGGTCTG 58.725 38.462 0.00 0.00 37.09 3.51
1817 1987 4.312443 TGTCGGTACTCTTGGAATTTGAC 58.688 43.478 0.00 0.00 0.00 3.18
1903 2077 0.911769 TGTCATCCTCGGCTCCAAAT 59.088 50.000 0.00 0.00 0.00 2.32
1917 2091 3.115390 CTCCAAATACTTCAGAGGGGGA 58.885 50.000 0.00 0.00 0.00 4.81
2063 2916 8.903820 ACATCAAAATAGTCCCTGCTAAATTAC 58.096 33.333 0.00 0.00 0.00 1.89
2086 2939 5.839606 ACTTAGGGACCAGCTATACTTAAGG 59.160 44.000 7.53 0.00 0.00 2.69
2087 2940 4.554553 AGGGACCAGCTATACTTAAGGA 57.445 45.455 7.53 0.00 0.00 3.36
2196 3098 4.133820 CCCTGTGTACATGTGTTTCTGAA 58.866 43.478 9.11 0.00 0.00 3.02
2197 3099 4.578516 CCCTGTGTACATGTGTTTCTGAAA 59.421 41.667 9.11 0.00 0.00 2.69
2198 3100 5.067153 CCCTGTGTACATGTGTTTCTGAAAA 59.933 40.000 9.11 0.00 0.00 2.29
2199 3101 6.239008 CCCTGTGTACATGTGTTTCTGAAAAT 60.239 38.462 9.11 0.00 0.00 1.82
2200 3102 6.638063 CCTGTGTACATGTGTTTCTGAAAATG 59.362 38.462 9.11 7.90 0.00 2.32
2201 3103 7.326968 TGTGTACATGTGTTTCTGAAAATGA 57.673 32.000 9.11 0.94 0.00 2.57
2202 3104 7.416817 TGTGTACATGTGTTTCTGAAAATGAG 58.583 34.615 9.11 5.29 0.00 2.90
2203 3105 6.360681 GTGTACATGTGTTTCTGAAAATGAGC 59.639 38.462 9.11 10.34 0.00 4.26
2204 3106 4.874970 ACATGTGTTTCTGAAAATGAGCC 58.125 39.130 16.23 1.08 0.00 4.70
2205 3107 4.586001 ACATGTGTTTCTGAAAATGAGCCT 59.414 37.500 16.23 0.00 0.00 4.58
2206 3108 5.069516 ACATGTGTTTCTGAAAATGAGCCTT 59.930 36.000 16.23 0.00 0.00 4.35
2207 3109 5.186996 TGTGTTTCTGAAAATGAGCCTTC 57.813 39.130 4.09 0.00 0.00 3.46
2208 3110 4.222114 GTGTTTCTGAAAATGAGCCTTCG 58.778 43.478 4.09 0.00 0.00 3.79
2209 3111 3.882888 TGTTTCTGAAAATGAGCCTTCGT 59.117 39.130 4.09 0.00 0.00 3.85
2210 3112 4.338118 TGTTTCTGAAAATGAGCCTTCGTT 59.662 37.500 4.09 0.00 33.99 3.85
2211 3113 5.163561 TGTTTCTGAAAATGAGCCTTCGTTT 60.164 36.000 4.09 0.00 42.82 3.60
2237 3139 2.615986 TGGTGGCTTCAGACTACCTA 57.384 50.000 0.00 0.00 32.68 3.08
2240 3142 4.616553 TGGTGGCTTCAGACTACCTAATA 58.383 43.478 0.00 0.00 32.68 0.98
2293 3195 5.443185 AATAAAATAGCTGCATGCATCGT 57.557 34.783 22.97 11.21 45.94 3.73
2294 3196 3.344904 AAAATAGCTGCATGCATCGTC 57.655 42.857 22.97 10.78 45.94 4.20
2307 3209 1.445095 ATCGTCCAGATGCAGAGGC 59.555 57.895 0.00 0.00 38.36 4.70
2379 4583 1.032014 GAGTTTTGCAACTGCCTGGA 58.968 50.000 0.00 0.00 43.79 3.86
2380 4584 1.615392 GAGTTTTGCAACTGCCTGGAT 59.385 47.619 0.00 0.00 43.79 3.41
2519 5120 2.361357 ACTCGTGCGGCTAGGAGT 60.361 61.111 16.45 16.45 40.02 3.85
2525 5126 4.129737 GCGGCTAGGAGTGCGACA 62.130 66.667 0.00 0.00 0.00 4.35
2539 5485 1.153823 CGACAACGGCGAGGATTCT 60.154 57.895 16.62 0.00 35.72 2.40
2560 5506 0.105039 GTCGAATCTTGCCGGATCCT 59.895 55.000 5.05 0.00 0.00 3.24
2562 5508 2.028930 GTCGAATCTTGCCGGATCCTAT 60.029 50.000 5.05 0.00 0.00 2.57
2641 5723 3.637273 GGTCTGGCGGGGTTGACT 61.637 66.667 0.00 0.00 0.00 3.41
2874 8830 1.886542 GGTTTCGGGAGAGCATGTTTT 59.113 47.619 0.00 0.00 41.75 2.43
2875 8831 2.351738 GGTTTCGGGAGAGCATGTTTTG 60.352 50.000 0.00 0.00 41.75 2.44
2911 10930 4.036262 TGTTGCAATAGTCAGTGTGTTTCC 59.964 41.667 0.59 0.00 0.00 3.13
2920 10939 6.036577 AGTCAGTGTGTTTCCAAAACAAAT 57.963 33.333 6.81 0.00 31.20 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 4.489771 GTGATGAGGGGTGCGGGG 62.490 72.222 0.00 0.00 0.00 5.73
8 9 3.391665 GAGTGATGAGGGGTGCGGG 62.392 68.421 0.00 0.00 0.00 6.13
9 10 2.187946 GAGTGATGAGGGGTGCGG 59.812 66.667 0.00 0.00 0.00 5.69
10 11 1.153489 CAGAGTGATGAGGGGTGCG 60.153 63.158 0.00 0.00 0.00 5.34
11 12 0.107945 GACAGAGTGATGAGGGGTGC 60.108 60.000 0.00 0.00 0.00 5.01
12 13 1.269958 TGACAGAGTGATGAGGGGTG 58.730 55.000 0.00 0.00 0.00 4.61
13 14 2.030027 TTGACAGAGTGATGAGGGGT 57.970 50.000 0.00 0.00 0.00 4.95
14 15 2.238144 ACATTGACAGAGTGATGAGGGG 59.762 50.000 0.00 0.00 0.00 4.79
15 16 3.529533 GACATTGACAGAGTGATGAGGG 58.470 50.000 0.00 0.00 0.00 4.30
16 17 3.055602 TGGACATTGACAGAGTGATGAGG 60.056 47.826 0.00 0.00 0.00 3.86
17 18 3.931468 GTGGACATTGACAGAGTGATGAG 59.069 47.826 0.00 0.00 0.00 2.90
18 19 3.306989 GGTGGACATTGACAGAGTGATGA 60.307 47.826 0.00 0.00 0.00 2.92
19 20 3.005554 GGTGGACATTGACAGAGTGATG 58.994 50.000 0.00 0.00 0.00 3.07
20 21 2.026822 GGGTGGACATTGACAGAGTGAT 60.027 50.000 0.00 0.00 0.00 3.06
21 22 1.347707 GGGTGGACATTGACAGAGTGA 59.652 52.381 0.00 0.00 0.00 3.41
22 23 1.349026 AGGGTGGACATTGACAGAGTG 59.651 52.381 0.00 0.00 0.00 3.51
23 24 1.625818 GAGGGTGGACATTGACAGAGT 59.374 52.381 0.00 0.00 0.00 3.24
24 25 1.905215 AGAGGGTGGACATTGACAGAG 59.095 52.381 0.00 0.00 0.00 3.35
25 26 1.902508 GAGAGGGTGGACATTGACAGA 59.097 52.381 0.00 0.00 0.00 3.41
26 27 1.404717 CGAGAGGGTGGACATTGACAG 60.405 57.143 0.00 0.00 0.00 3.51
27 28 0.608130 CGAGAGGGTGGACATTGACA 59.392 55.000 0.00 0.00 0.00 3.58
28 29 3.442996 CGAGAGGGTGGACATTGAC 57.557 57.895 0.00 0.00 0.00 3.18
41 42 2.183811 CTGCTGGTGAGCCGAGAG 59.816 66.667 0.00 0.00 45.57 3.20
42 43 4.074526 GCTGCTGGTGAGCCGAGA 62.075 66.667 0.00 0.00 45.57 4.04
43 44 3.602513 AAGCTGCTGGTGAGCCGAG 62.603 63.158 1.35 0.00 45.57 4.63
44 45 3.182590 AAAGCTGCTGGTGAGCCGA 62.183 57.895 1.35 0.00 45.57 5.54
45 46 2.670934 AAAGCTGCTGGTGAGCCG 60.671 61.111 1.35 0.00 45.57 5.52
46 47 1.860484 GACAAAGCTGCTGGTGAGCC 61.860 60.000 17.59 5.55 45.57 4.70
47 48 1.168407 TGACAAAGCTGCTGGTGAGC 61.168 55.000 17.59 10.67 46.44 4.26
48 49 0.873054 CTGACAAAGCTGCTGGTGAG 59.127 55.000 17.59 12.19 0.00 3.51
49 50 0.469494 TCTGACAAAGCTGCTGGTGA 59.531 50.000 17.59 7.06 0.00 4.02
50 51 1.531423 ATCTGACAAAGCTGCTGGTG 58.469 50.000 1.35 7.51 0.00 4.17
51 52 3.423539 TTATCTGACAAAGCTGCTGGT 57.576 42.857 1.35 4.73 0.00 4.00
52 53 4.978083 AATTATCTGACAAAGCTGCTGG 57.022 40.909 1.35 0.87 0.00 4.85
53 54 7.013083 AGGATTAATTATCTGACAAAGCTGCTG 59.987 37.037 1.35 0.00 33.53 4.41
54 55 7.059156 AGGATTAATTATCTGACAAAGCTGCT 58.941 34.615 0.00 0.00 33.53 4.24
55 56 7.269477 AGGATTAATTATCTGACAAAGCTGC 57.731 36.000 0.00 0.00 33.53 5.25
76 77 9.905713 AACAATAGCTTGTCTGAATAATTAGGA 57.094 29.630 0.00 0.00 44.83 2.94
82 83 8.443160 CGAAAGAACAATAGCTTGTCTGAATAA 58.557 33.333 0.00 0.00 44.83 1.40
83 84 7.413000 GCGAAAGAACAATAGCTTGTCTGAATA 60.413 37.037 0.00 0.00 44.83 1.75
84 85 6.621596 GCGAAAGAACAATAGCTTGTCTGAAT 60.622 38.462 0.00 0.00 44.83 2.57
85 86 5.334105 GCGAAAGAACAATAGCTTGTCTGAA 60.334 40.000 0.00 0.00 44.83 3.02
86 87 4.152402 GCGAAAGAACAATAGCTTGTCTGA 59.848 41.667 0.00 0.00 44.83 3.27
87 88 4.398247 GCGAAAGAACAATAGCTTGTCTG 58.602 43.478 0.00 0.00 44.83 3.51
88 89 3.123621 CGCGAAAGAACAATAGCTTGTCT 59.876 43.478 0.00 0.00 44.83 3.41
89 90 3.120649 ACGCGAAAGAACAATAGCTTGTC 60.121 43.478 15.93 0.00 44.83 3.18
91 92 3.120683 TGACGCGAAAGAACAATAGCTTG 60.121 43.478 15.93 0.00 38.39 4.01
92 93 3.064207 TGACGCGAAAGAACAATAGCTT 58.936 40.909 15.93 0.00 0.00 3.74
93 94 2.412089 GTGACGCGAAAGAACAATAGCT 59.588 45.455 15.93 0.00 0.00 3.32
94 95 2.474032 GGTGACGCGAAAGAACAATAGC 60.474 50.000 15.93 0.00 0.00 2.97
95 96 2.734606 TGGTGACGCGAAAGAACAATAG 59.265 45.455 15.93 0.00 0.00 1.73
96 97 2.756829 TGGTGACGCGAAAGAACAATA 58.243 42.857 15.93 0.00 0.00 1.90
97 98 1.588674 TGGTGACGCGAAAGAACAAT 58.411 45.000 15.93 0.00 0.00 2.71
98 99 1.588674 ATGGTGACGCGAAAGAACAA 58.411 45.000 15.93 0.00 0.00 2.83
99 100 1.588674 AATGGTGACGCGAAAGAACA 58.411 45.000 15.93 1.83 0.00 3.18
100 101 2.286772 ACAAATGGTGACGCGAAAGAAC 60.287 45.455 15.93 2.79 0.00 3.01
101 102 1.944024 ACAAATGGTGACGCGAAAGAA 59.056 42.857 15.93 0.00 0.00 2.52
102 103 1.529438 GACAAATGGTGACGCGAAAGA 59.471 47.619 15.93 0.00 0.00 2.52
103 104 1.721489 CGACAAATGGTGACGCGAAAG 60.721 52.381 15.93 0.00 38.50 2.62
104 105 0.233590 CGACAAATGGTGACGCGAAA 59.766 50.000 15.93 0.00 38.50 3.46
105 106 1.856688 CGACAAATGGTGACGCGAA 59.143 52.632 15.93 0.00 38.50 4.70
106 107 3.544728 CGACAAATGGTGACGCGA 58.455 55.556 15.93 0.00 38.50 5.87
109 110 0.795698 TCATGCGACAAATGGTGACG 59.204 50.000 0.00 0.00 46.26 4.35
110 111 1.466360 GCTCATGCGACAAATGGTGAC 60.466 52.381 0.00 0.00 0.00 3.67
111 112 0.804364 GCTCATGCGACAAATGGTGA 59.196 50.000 0.00 0.00 0.00 4.02
112 113 0.522626 TGCTCATGCGACAAATGGTG 59.477 50.000 0.00 0.00 43.34 4.17
113 114 1.200716 CTTGCTCATGCGACAAATGGT 59.799 47.619 0.00 0.00 43.34 3.55
114 115 1.904144 CTTGCTCATGCGACAAATGG 58.096 50.000 0.00 0.00 43.34 3.16
115 116 1.265568 GCTTGCTCATGCGACAAATG 58.734 50.000 0.00 0.00 43.34 2.32
116 117 0.171903 GGCTTGCTCATGCGACAAAT 59.828 50.000 0.00 0.00 43.34 2.32
117 118 0.890542 AGGCTTGCTCATGCGACAAA 60.891 50.000 0.00 0.00 43.34 2.83
118 119 1.302752 AGGCTTGCTCATGCGACAA 60.303 52.632 0.00 0.00 43.34 3.18
119 120 2.036571 CAGGCTTGCTCATGCGACA 61.037 57.895 0.00 0.00 43.34 4.35
120 121 2.758089 CCAGGCTTGCTCATGCGAC 61.758 63.158 0.00 0.00 43.34 5.19
121 122 2.437180 CCAGGCTTGCTCATGCGA 60.437 61.111 0.00 0.00 43.34 5.10
122 123 2.042259 TTCCAGGCTTGCTCATGCG 61.042 57.895 0.00 0.00 43.34 4.73
123 124 1.246056 TGTTCCAGGCTTGCTCATGC 61.246 55.000 0.00 0.00 40.20 4.06
124 125 1.201647 CTTGTTCCAGGCTTGCTCATG 59.798 52.381 0.00 0.00 0.00 3.07
125 126 1.074405 TCTTGTTCCAGGCTTGCTCAT 59.926 47.619 0.00 0.00 0.00 2.90
126 127 0.473755 TCTTGTTCCAGGCTTGCTCA 59.526 50.000 0.00 0.00 0.00 4.26
127 128 1.609208 TTCTTGTTCCAGGCTTGCTC 58.391 50.000 0.00 0.00 0.00 4.26
128 129 2.165998 GATTCTTGTTCCAGGCTTGCT 58.834 47.619 0.00 0.00 0.00 3.91
129 130 1.888512 TGATTCTTGTTCCAGGCTTGC 59.111 47.619 0.00 0.00 0.00 4.01
130 131 3.152341 AGTGATTCTTGTTCCAGGCTTG 58.848 45.455 0.00 0.00 0.00 4.01
131 132 3.416156 GAGTGATTCTTGTTCCAGGCTT 58.584 45.455 0.00 0.00 0.00 4.35
132 133 2.613977 CGAGTGATTCTTGTTCCAGGCT 60.614 50.000 0.00 0.00 0.00 4.58
133 134 1.734465 CGAGTGATTCTTGTTCCAGGC 59.266 52.381 0.00 0.00 0.00 4.85
134 135 2.289694 ACCGAGTGATTCTTGTTCCAGG 60.290 50.000 0.00 0.00 0.00 4.45
135 136 3.045601 ACCGAGTGATTCTTGTTCCAG 57.954 47.619 0.00 0.00 0.00 3.86
136 137 3.485463 AACCGAGTGATTCTTGTTCCA 57.515 42.857 0.00 0.00 0.00 3.53
137 138 3.188667 GGAAACCGAGTGATTCTTGTTCC 59.811 47.826 0.00 0.00 0.00 3.62
138 139 4.065789 AGGAAACCGAGTGATTCTTGTTC 58.934 43.478 0.00 0.00 0.00 3.18
139 140 4.065789 GAGGAAACCGAGTGATTCTTGTT 58.934 43.478 0.00 0.00 0.00 2.83
140 141 3.557264 GGAGGAAACCGAGTGATTCTTGT 60.557 47.826 0.00 0.00 0.00 3.16
141 142 3.003480 GGAGGAAACCGAGTGATTCTTG 58.997 50.000 0.00 0.00 0.00 3.02
142 143 2.637872 TGGAGGAAACCGAGTGATTCTT 59.362 45.455 0.00 0.00 0.00 2.52
143 144 2.028020 GTGGAGGAAACCGAGTGATTCT 60.028 50.000 0.00 0.00 0.00 2.40
144 145 2.347731 GTGGAGGAAACCGAGTGATTC 58.652 52.381 0.00 0.00 0.00 2.52
145 146 1.337823 CGTGGAGGAAACCGAGTGATT 60.338 52.381 0.00 0.00 0.00 2.57
146 147 0.246635 CGTGGAGGAAACCGAGTGAT 59.753 55.000 0.00 0.00 0.00 3.06
147 148 1.663739 CGTGGAGGAAACCGAGTGA 59.336 57.895 0.00 0.00 0.00 3.41
148 149 1.374252 CCGTGGAGGAAACCGAGTG 60.374 63.158 0.00 0.00 45.00 3.51
149 150 2.580601 CCCGTGGAGGAAACCGAGT 61.581 63.158 0.00 0.00 45.00 4.18
150 151 2.264794 CCCGTGGAGGAAACCGAG 59.735 66.667 0.00 0.00 45.00 4.63
151 152 3.315949 CCCCGTGGAGGAAACCGA 61.316 66.667 0.00 0.00 45.00 4.69
152 153 3.600898 GACCCCGTGGAGGAAACCG 62.601 68.421 0.00 0.00 45.00 4.44
153 154 2.350134 GACCCCGTGGAGGAAACC 59.650 66.667 0.00 0.00 45.00 3.27
154 155 1.302271 GTGACCCCGTGGAGGAAAC 60.302 63.158 0.00 0.00 45.00 2.78
155 156 1.346479 TTGTGACCCCGTGGAGGAAA 61.346 55.000 0.00 0.00 45.00 3.13
156 157 1.346479 TTTGTGACCCCGTGGAGGAA 61.346 55.000 0.00 0.00 45.00 3.36
157 158 1.131303 ATTTGTGACCCCGTGGAGGA 61.131 55.000 0.00 0.00 45.00 3.71
158 159 0.616371 TATTTGTGACCCCGTGGAGG 59.384 55.000 0.00 0.00 40.63 4.30
159 160 2.710096 ATATTTGTGACCCCGTGGAG 57.290 50.000 0.00 0.00 34.81 3.86
160 161 3.109151 ACTATATTTGTGACCCCGTGGA 58.891 45.455 0.00 0.00 34.81 4.02
161 162 3.202906 CACTATATTTGTGACCCCGTGG 58.797 50.000 3.34 0.00 37.60 4.94
162 163 2.612212 GCACTATATTTGTGACCCCGTG 59.388 50.000 11.27 0.00 37.60 4.94
163 164 2.504175 AGCACTATATTTGTGACCCCGT 59.496 45.455 11.27 0.00 37.60 5.28
164 165 3.194005 AGCACTATATTTGTGACCCCG 57.806 47.619 11.27 0.00 37.60 5.73
165 166 6.970484 CAAATAGCACTATATTTGTGACCCC 58.030 40.000 11.27 0.00 43.48 4.95
174 175 9.627123 TCTAAAGCCAACAAATAGCACTATATT 57.373 29.630 0.00 0.00 0.00 1.28
175 176 9.799106 ATCTAAAGCCAACAAATAGCACTATAT 57.201 29.630 0.00 0.00 0.00 0.86
176 177 9.056005 CATCTAAAGCCAACAAATAGCACTATA 57.944 33.333 0.00 0.00 0.00 1.31
177 178 7.557719 ACATCTAAAGCCAACAAATAGCACTAT 59.442 33.333 0.00 0.00 0.00 2.12
178 179 6.884295 ACATCTAAAGCCAACAAATAGCACTA 59.116 34.615 0.00 0.00 0.00 2.74
179 180 5.711976 ACATCTAAAGCCAACAAATAGCACT 59.288 36.000 0.00 0.00 0.00 4.40
180 181 5.801947 CACATCTAAAGCCAACAAATAGCAC 59.198 40.000 0.00 0.00 0.00 4.40
181 182 5.105797 CCACATCTAAAGCCAACAAATAGCA 60.106 40.000 0.00 0.00 0.00 3.49
182 183 5.125417 TCCACATCTAAAGCCAACAAATAGC 59.875 40.000 0.00 0.00 0.00 2.97
183 184 6.150976 TGTCCACATCTAAAGCCAACAAATAG 59.849 38.462 0.00 0.00 0.00 1.73
184 185 6.007076 TGTCCACATCTAAAGCCAACAAATA 58.993 36.000 0.00 0.00 0.00 1.40
185 186 4.832266 TGTCCACATCTAAAGCCAACAAAT 59.168 37.500 0.00 0.00 0.00 2.32
186 187 4.211125 TGTCCACATCTAAAGCCAACAAA 58.789 39.130 0.00 0.00 0.00 2.83
187 188 3.826524 TGTCCACATCTAAAGCCAACAA 58.173 40.909 0.00 0.00 0.00 2.83
188 189 3.500448 TGTCCACATCTAAAGCCAACA 57.500 42.857 0.00 0.00 0.00 3.33
189 190 5.186198 ACTATGTCCACATCTAAAGCCAAC 58.814 41.667 0.00 0.00 37.76 3.77
190 191 5.189736 AGACTATGTCCACATCTAAAGCCAA 59.810 40.000 0.00 0.00 37.76 4.52
191 192 4.716784 AGACTATGTCCACATCTAAAGCCA 59.283 41.667 0.00 0.00 37.76 4.75
192 193 5.283457 AGACTATGTCCACATCTAAAGCC 57.717 43.478 0.00 0.00 37.76 4.35
193 194 5.163405 TGGAGACTATGTCCACATCTAAAGC 60.163 44.000 0.00 0.00 39.28 3.51
194 195 6.462207 CCTGGAGACTATGTCCACATCTAAAG 60.462 46.154 0.00 0.00 39.28 1.85
195 196 5.363868 CCTGGAGACTATGTCCACATCTAAA 59.636 44.000 0.00 0.00 39.28 1.85
196 197 4.895889 CCTGGAGACTATGTCCACATCTAA 59.104 45.833 0.00 0.00 39.28 2.10
197 198 4.168088 TCCTGGAGACTATGTCCACATCTA 59.832 45.833 0.00 0.00 39.28 1.98
198 199 3.052566 TCCTGGAGACTATGTCCACATCT 60.053 47.826 0.00 0.00 39.28 2.90
199 200 3.300388 TCCTGGAGACTATGTCCACATC 58.700 50.000 0.00 0.00 39.28 3.06
200 201 3.404869 TCCTGGAGACTATGTCCACAT 57.595 47.619 0.00 0.00 39.28 3.21
201 202 2.919772 TCCTGGAGACTATGTCCACA 57.080 50.000 0.00 0.00 39.28 4.17
202 203 3.034635 ACATCCTGGAGACTATGTCCAC 58.965 50.000 1.52 0.00 39.28 4.02
203 204 3.404869 ACATCCTGGAGACTATGTCCA 57.595 47.619 1.52 0.00 42.06 4.02
204 205 6.426646 AATTACATCCTGGAGACTATGTCC 57.573 41.667 1.52 0.00 34.54 4.02
205 206 8.738645 AAAAATTACATCCTGGAGACTATGTC 57.261 34.615 1.52 0.00 34.54 3.06
228 229 9.762381 AGGGTAATATGGACATTTCTAACAAAA 57.238 29.630 0.00 0.00 0.00 2.44
229 230 9.762381 AAGGGTAATATGGACATTTCTAACAAA 57.238 29.630 0.00 0.00 0.00 2.83
230 231 9.762381 AAAGGGTAATATGGACATTTCTAACAA 57.238 29.630 0.00 0.00 0.00 2.83
235 236 9.720769 CGTATAAAGGGTAATATGGACATTTCT 57.279 33.333 0.00 0.00 0.00 2.52
236 237 9.498176 ACGTATAAAGGGTAATATGGACATTTC 57.502 33.333 0.00 0.00 0.00 2.17
240 241 9.932207 CAATACGTATAAAGGGTAATATGGACA 57.068 33.333 8.83 0.00 0.00 4.02
241 242 8.876790 GCAATACGTATAAAGGGTAATATGGAC 58.123 37.037 8.83 0.00 0.00 4.02
242 243 7.760794 CGCAATACGTATAAAGGGTAATATGGA 59.239 37.037 8.83 0.00 36.87 3.41
243 244 7.760794 TCGCAATACGTATAAAGGGTAATATGG 59.239 37.037 8.83 0.00 44.19 2.74
244 245 8.692110 TCGCAATACGTATAAAGGGTAATATG 57.308 34.615 8.83 0.00 44.19 1.78
245 246 7.977853 CCTCGCAATACGTATAAAGGGTAATAT 59.022 37.037 8.83 0.00 44.19 1.28
246 247 7.315142 CCTCGCAATACGTATAAAGGGTAATA 58.685 38.462 8.83 0.00 44.19 0.98
247 248 6.161381 CCTCGCAATACGTATAAAGGGTAAT 58.839 40.000 8.83 0.00 44.19 1.89
248 249 5.509501 CCCTCGCAATACGTATAAAGGGTAA 60.510 44.000 23.56 7.84 42.95 2.85
249 250 4.022068 CCCTCGCAATACGTATAAAGGGTA 60.022 45.833 23.56 10.82 42.95 3.69
250 251 3.243975 CCCTCGCAATACGTATAAAGGGT 60.244 47.826 23.56 3.64 42.95 4.34
251 252 3.323243 CCCTCGCAATACGTATAAAGGG 58.677 50.000 20.91 20.91 42.52 3.95
252 253 3.323243 CCCCTCGCAATACGTATAAAGG 58.677 50.000 8.83 12.28 44.19 3.11
253 254 3.323243 CCCCCTCGCAATACGTATAAAG 58.677 50.000 8.83 3.50 44.19 1.85
254 255 3.389925 CCCCCTCGCAATACGTATAAA 57.610 47.619 8.83 0.00 44.19 1.40
271 272 2.435410 CGCTTCGGTACAACCCCC 60.435 66.667 0.00 0.00 33.75 5.40
272 273 2.435410 CCGCTTCGGTACAACCCC 60.435 66.667 0.00 0.00 42.73 4.95
273 274 2.435410 CCCGCTTCGGTACAACCC 60.435 66.667 4.47 0.00 46.80 4.11
274 275 1.739196 GTCCCGCTTCGGTACAACC 60.739 63.158 4.47 0.00 46.80 3.77
275 276 0.735287 GAGTCCCGCTTCGGTACAAC 60.735 60.000 3.93 0.00 46.80 3.32
276 277 1.180456 TGAGTCCCGCTTCGGTACAA 61.180 55.000 3.93 0.00 46.80 2.41
277 278 1.180456 TTGAGTCCCGCTTCGGTACA 61.180 55.000 3.93 0.00 46.80 2.90
278 279 0.175073 ATTGAGTCCCGCTTCGGTAC 59.825 55.000 4.47 0.00 46.80 3.34
279 280 0.899720 AATTGAGTCCCGCTTCGGTA 59.100 50.000 4.47 0.00 46.80 4.02
280 281 0.036306 AAATTGAGTCCCGCTTCGGT 59.964 50.000 4.47 0.00 46.80 4.69
282 283 2.989422 AAAAATTGAGTCCCGCTTCG 57.011 45.000 0.00 0.00 0.00 3.79
299 300 9.208022 TGTGAATACAATGAAACAACAACAAAA 57.792 25.926 0.00 0.00 32.88 2.44
300 301 8.651588 GTGTGAATACAATGAAACAACAACAAA 58.348 29.630 0.00 0.00 38.82 2.83
301 302 7.008719 CGTGTGAATACAATGAAACAACAACAA 59.991 33.333 0.00 0.00 38.82 2.83
302 303 6.470556 CGTGTGAATACAATGAAACAACAACA 59.529 34.615 0.00 0.00 38.82 3.33
303 304 6.559521 GCGTGTGAATACAATGAAACAACAAC 60.560 38.462 0.00 0.00 38.82 3.32
304 305 5.457148 GCGTGTGAATACAATGAAACAACAA 59.543 36.000 0.00 0.00 38.82 2.83
305 306 4.973051 GCGTGTGAATACAATGAAACAACA 59.027 37.500 0.00 0.00 38.82 3.33
306 307 5.212194 AGCGTGTGAATACAATGAAACAAC 58.788 37.500 0.00 0.00 38.82 3.32
307 308 5.431420 AGCGTGTGAATACAATGAAACAA 57.569 34.783 0.00 0.00 38.82 2.83
308 309 5.699001 ACTAGCGTGTGAATACAATGAAACA 59.301 36.000 0.00 0.00 38.82 2.83
309 310 6.165659 ACTAGCGTGTGAATACAATGAAAC 57.834 37.500 0.00 0.00 38.82 2.78
310 311 6.869388 TGTACTAGCGTGTGAATACAATGAAA 59.131 34.615 0.00 0.00 38.82 2.69
311 312 6.391537 TGTACTAGCGTGTGAATACAATGAA 58.608 36.000 0.00 0.00 38.82 2.57
312 313 5.956642 TGTACTAGCGTGTGAATACAATGA 58.043 37.500 0.00 0.00 38.82 2.57
313 314 6.310467 ACTTGTACTAGCGTGTGAATACAATG 59.690 38.462 4.10 0.00 38.82 2.82
314 315 6.395629 ACTTGTACTAGCGTGTGAATACAAT 58.604 36.000 4.10 0.00 38.82 2.71
315 316 5.775686 ACTTGTACTAGCGTGTGAATACAA 58.224 37.500 4.10 0.00 38.82 2.41
316 317 5.381174 ACTTGTACTAGCGTGTGAATACA 57.619 39.130 4.10 0.00 0.00 2.29
317 318 7.982371 ATAACTTGTACTAGCGTGTGAATAC 57.018 36.000 4.10 0.00 0.00 1.89
319 320 9.595823 AATAATAACTTGTACTAGCGTGTGAAT 57.404 29.630 4.10 0.00 0.00 2.57
320 321 8.991243 AATAATAACTTGTACTAGCGTGTGAA 57.009 30.769 4.10 0.00 0.00 3.18
377 378 5.243730 CACCACCATTTACCTTGTTTCAGAT 59.756 40.000 0.00 0.00 0.00 2.90
395 396 2.306847 ACCATGTTTTCTGACACCACC 58.693 47.619 0.00 0.00 31.30 4.61
396 397 3.059188 CGTACCATGTTTTCTGACACCAC 60.059 47.826 0.00 0.00 31.30 4.16
397 398 3.135225 CGTACCATGTTTTCTGACACCA 58.865 45.455 0.00 0.00 31.30 4.17
398 399 3.395639 TCGTACCATGTTTTCTGACACC 58.604 45.455 0.00 0.00 31.30 4.16
399 400 5.408604 AGATTCGTACCATGTTTTCTGACAC 59.591 40.000 0.00 0.00 31.30 3.67
400 401 5.547465 AGATTCGTACCATGTTTTCTGACA 58.453 37.500 0.00 0.00 0.00 3.58
401 402 6.481954 AAGATTCGTACCATGTTTTCTGAC 57.518 37.500 0.00 0.00 0.00 3.51
402 403 8.610248 TTTAAGATTCGTACCATGTTTTCTGA 57.390 30.769 0.00 0.00 0.00 3.27
405 406 7.302524 TGCTTTAAGATTCGTACCATGTTTTC 58.697 34.615 0.00 0.00 0.00 2.29
415 416 4.092383 GTCCGCTTTGCTTTAAGATTCGTA 59.908 41.667 0.00 0.00 0.00 3.43
417 418 3.417185 GTCCGCTTTGCTTTAAGATTCG 58.583 45.455 0.00 0.00 0.00 3.34
419 420 2.161609 CCGTCCGCTTTGCTTTAAGATT 59.838 45.455 0.00 0.00 0.00 2.40
424 425 1.231958 CCACCGTCCGCTTTGCTTTA 61.232 55.000 0.00 0.00 0.00 1.85
432 433 2.363276 TACCATCCACCGTCCGCT 60.363 61.111 0.00 0.00 0.00 5.52
434 435 0.533491 TTTCTACCATCCACCGTCCG 59.467 55.000 0.00 0.00 0.00 4.79
456 458 5.251700 AGTTCCACCTCTTCCATAGTGATTT 59.748 40.000 0.00 0.00 31.79 2.17
457 459 4.785376 AGTTCCACCTCTTCCATAGTGATT 59.215 41.667 0.00 0.00 31.79 2.57
459 461 3.791320 AGTTCCACCTCTTCCATAGTGA 58.209 45.455 0.00 0.00 31.79 3.41
460 462 4.559862 AAGTTCCACCTCTTCCATAGTG 57.440 45.455 0.00 0.00 0.00 2.74
467 469 3.636153 AGGCATAAGTTCCACCTCTTC 57.364 47.619 0.00 0.00 0.00 2.87
470 472 2.167900 ACGTAGGCATAAGTTCCACCTC 59.832 50.000 0.00 0.00 31.79 3.85
476 478 1.933853 CCAGCACGTAGGCATAAGTTC 59.066 52.381 0.00 0.00 35.83 3.01
482 484 2.244117 CTCACCCAGCACGTAGGCAT 62.244 60.000 0.36 0.00 35.83 4.40
516 521 4.222588 CCAAAGGTTTGATTGGGAATGCTA 59.777 41.667 3.95 0.00 41.93 3.49
518 523 3.337358 CCAAAGGTTTGATTGGGAATGC 58.663 45.455 3.95 0.00 41.93 3.56
521 526 2.402564 TGCCAAAGGTTTGATTGGGAA 58.597 42.857 3.95 0.00 43.01 3.97
559 564 4.279922 AGCGGTAGTATTTGCCAACTTTTT 59.720 37.500 0.00 0.00 0.00 1.94
560 565 3.824443 AGCGGTAGTATTTGCCAACTTTT 59.176 39.130 0.00 0.00 0.00 2.27
561 566 3.418047 AGCGGTAGTATTTGCCAACTTT 58.582 40.909 0.00 0.00 0.00 2.66
562 567 3.007635 GAGCGGTAGTATTTGCCAACTT 58.992 45.455 0.00 0.00 0.00 2.66
563 568 2.629051 GAGCGGTAGTATTTGCCAACT 58.371 47.619 0.00 0.00 0.00 3.16
568 573 1.264288 GCATGGAGCGGTAGTATTTGC 59.736 52.381 0.00 0.00 0.00 3.68
587 592 2.317609 ATCGTGCCACTGTCGTTGC 61.318 57.895 0.00 0.00 32.75 4.17
589 594 1.667830 CCATCGTGCCACTGTCGTT 60.668 57.895 0.00 0.00 0.00 3.85
625 630 3.799755 GCGTGCGTGGGTTCCATC 61.800 66.667 0.00 0.00 35.28 3.51
701 710 4.410400 GGTCCGACTTGGCAGGGG 62.410 72.222 0.44 0.00 37.80 4.79
735 744 1.500512 TTGGCGACGGAAAAGTTCGG 61.501 55.000 0.00 0.00 36.23 4.30
753 762 0.387239 GCACGGCGAAAATCTGCTTT 60.387 50.000 16.62 0.00 0.00 3.51
766 775 1.324736 CGTAGATGAGAAAAGCACGGC 59.675 52.381 0.00 0.00 0.00 5.68
791 811 2.103538 GCGTAACGGCCGAGATGA 59.896 61.111 35.90 8.74 0.00 2.92
803 823 4.433877 GGGGGCGTACGTGCGTAA 62.434 66.667 26.31 0.00 35.06 3.18
847 881 1.592400 CGGCGGGTCAGTAGTCTTCA 61.592 60.000 0.00 0.00 0.00 3.02
879 914 5.755409 TTGCACAGGAGGTTATTCTTCTA 57.245 39.130 0.00 0.00 0.00 2.10
887 922 0.392461 GCGGATTGCACAGGAGGTTA 60.392 55.000 0.00 0.00 45.45 2.85
1101 1164 5.912892 AGAGGCTCTTGATAAGACTTTAGC 58.087 41.667 12.24 0.00 30.16 3.09
1157 1248 0.740868 CTCAGCTCGCCCGATTTTGA 60.741 55.000 0.00 0.00 0.00 2.69
1380 1486 4.753662 CGTCGTCCCCCTCCTCCA 62.754 72.222 0.00 0.00 0.00 3.86
1389 1495 2.750637 TCCTCAGCTCGTCGTCCC 60.751 66.667 0.00 0.00 0.00 4.46
1469 1575 3.402681 CATCCGGCCCAGACTGGT 61.403 66.667 20.24 0.00 35.17 4.00
1474 1580 4.113815 CCAAGCATCCGGCCCAGA 62.114 66.667 0.00 0.00 46.50 3.86
1631 1743 2.080286 TGCAAGACGAAACTAGGAGC 57.920 50.000 0.00 0.00 0.00 4.70
1661 1791 1.125266 CGAACGAACGAACGAGTGC 59.875 57.895 11.97 0.00 37.03 4.40
1663 1793 1.115639 GAACGAACGAACGAACGAGT 58.884 50.000 18.31 6.79 37.03 4.18
1664 1794 0.086901 CGAACGAACGAACGAACGAG 59.913 55.000 18.31 6.30 37.45 4.18
1665 1795 0.588730 ACGAACGAACGAACGAACGA 60.589 50.000 22.26 0.00 38.05 3.85
1666 1796 0.224499 AACGAACGAACGAACGAACG 59.776 50.000 18.31 15.65 39.31 3.95
1667 1797 1.252524 TGAACGAACGAACGAACGAAC 59.747 47.619 18.31 13.29 37.03 3.95
1668 1798 1.543614 TGAACGAACGAACGAACGAA 58.456 45.000 18.31 6.63 37.03 3.85
1669 1799 1.757574 ATGAACGAACGAACGAACGA 58.242 45.000 18.31 3.82 37.03 3.85
1712 1862 8.431222 ACCATTACAACTTTGTACTAGTACCAA 58.569 33.333 26.41 21.16 42.84 3.67
1781 1951 1.267261 ACCGACAATCGATCGAGATCC 59.733 52.381 23.84 11.40 43.74 3.36
1817 1987 7.444629 TCTGAATTCCTCAAGAATCACAAAG 57.555 36.000 2.27 0.00 44.75 2.77
1903 2077 2.317900 TCCTTGATCCCCCTCTGAAGTA 59.682 50.000 0.00 0.00 0.00 2.24
1917 2091 6.916360 TTAATGAAAAAGCAGGTCCTTGAT 57.084 33.333 0.00 0.00 0.00 2.57
1992 2845 1.595993 CTCTTGAAGTCCCGAGCGGA 61.596 60.000 11.05 0.00 38.83 5.54
1993 2846 1.153745 CTCTTGAAGTCCCGAGCGG 60.154 63.158 1.06 1.06 0.00 5.52
1994 2847 1.587054 ACTCTTGAAGTCCCGAGCG 59.413 57.895 0.00 0.00 30.02 5.03
2047 2900 5.130643 GTCCCTAAGTAATTTAGCAGGGACT 59.869 44.000 24.72 4.64 40.91 3.85
2063 2916 6.075984 TCCTTAAGTATAGCTGGTCCCTAAG 58.924 44.000 0.00 0.00 0.00 2.18
2086 2939 2.095212 CGGCCTGAAGGTAAGCTTTTTC 60.095 50.000 3.20 7.63 37.57 2.29
2087 2940 1.886542 CGGCCTGAAGGTAAGCTTTTT 59.113 47.619 3.20 0.00 37.57 1.94
2128 2984 1.658686 GATCTGACGGACACGGAGCT 61.659 60.000 0.00 0.00 46.48 4.09
2129 2985 1.226717 GATCTGACGGACACGGAGC 60.227 63.158 0.00 0.00 46.48 4.70
2167 3067 1.699634 ACATGTACACAGGGTGCTCTT 59.300 47.619 0.00 0.00 36.98 2.85
2196 3098 5.355350 CCATCTTAGAAACGAAGGCTCATTT 59.645 40.000 0.00 0.00 0.00 2.32
2197 3099 4.878397 CCATCTTAGAAACGAAGGCTCATT 59.122 41.667 0.00 0.00 0.00 2.57
2198 3100 4.080863 ACCATCTTAGAAACGAAGGCTCAT 60.081 41.667 0.00 0.00 0.00 2.90
2199 3101 3.260884 ACCATCTTAGAAACGAAGGCTCA 59.739 43.478 0.00 0.00 0.00 4.26
2200 3102 3.619038 CACCATCTTAGAAACGAAGGCTC 59.381 47.826 0.00 0.00 0.00 4.70
2201 3103 3.600388 CACCATCTTAGAAACGAAGGCT 58.400 45.455 0.00 0.00 0.00 4.58
2202 3104 2.678336 CCACCATCTTAGAAACGAAGGC 59.322 50.000 0.00 0.00 0.00 4.35
2203 3105 2.678336 GCCACCATCTTAGAAACGAAGG 59.322 50.000 0.00 0.00 0.00 3.46
2204 3106 3.600388 AGCCACCATCTTAGAAACGAAG 58.400 45.455 0.00 0.00 0.00 3.79
2205 3107 3.695830 AGCCACCATCTTAGAAACGAA 57.304 42.857 0.00 0.00 0.00 3.85
2206 3108 3.007506 TGAAGCCACCATCTTAGAAACGA 59.992 43.478 0.00 0.00 0.00 3.85
2207 3109 3.334691 TGAAGCCACCATCTTAGAAACG 58.665 45.455 0.00 0.00 0.00 3.60
2208 3110 4.393371 GTCTGAAGCCACCATCTTAGAAAC 59.607 45.833 0.00 0.00 0.00 2.78
2209 3111 4.287067 AGTCTGAAGCCACCATCTTAGAAA 59.713 41.667 0.00 0.00 0.00 2.52
2210 3112 3.840666 AGTCTGAAGCCACCATCTTAGAA 59.159 43.478 0.00 0.00 0.00 2.10
2211 3113 3.445008 AGTCTGAAGCCACCATCTTAGA 58.555 45.455 0.00 0.00 0.00 2.10
2279 3181 1.818363 CTGGACGATGCATGCAGCT 60.818 57.895 31.04 19.15 45.94 4.24
2293 3195 3.473647 CCGGCCTCTGCATCTGGA 61.474 66.667 0.00 0.00 40.13 3.86
2294 3196 4.559063 CCCGGCCTCTGCATCTGG 62.559 72.222 0.00 0.00 40.13 3.86
2307 3209 0.924090 AAAAGGAGGATTACCCCCGG 59.076 55.000 0.00 0.00 36.73 5.73
2339 3241 5.125578 ACTCTCTTTTTCGAAACAAAGGCTT 59.874 36.000 17.88 0.00 31.86 4.35
2492 5093 2.932234 CGCACGAGTCTCCACCCTT 61.932 63.158 0.00 0.00 0.00 3.95
2493 5094 3.374402 CGCACGAGTCTCCACCCT 61.374 66.667 0.00 0.00 0.00 4.34
2497 5098 2.360726 TAGCCGCACGAGTCTCCA 60.361 61.111 0.00 0.00 0.00 3.86
2519 5120 3.583276 AATCCTCGCCGTTGTCGCA 62.583 57.895 0.00 0.00 35.54 5.10
2525 5126 0.381089 CGACTAGAATCCTCGCCGTT 59.619 55.000 0.00 0.00 0.00 4.44
2539 5485 1.340248 GGATCCGGCAAGATTCGACTA 59.660 52.381 0.00 0.00 0.00 2.59
2560 5506 2.207229 CCCGCGGGTCATCCTCATA 61.207 63.158 36.64 0.00 0.00 2.15
2610 5691 1.451067 CAGACCTTACCGAGACGAGT 58.549 55.000 0.00 0.00 0.00 4.18
2621 5703 1.536907 TCAACCCCGCCAGACCTTA 60.537 57.895 0.00 0.00 0.00 2.69
2622 5704 2.852075 TCAACCCCGCCAGACCTT 60.852 61.111 0.00 0.00 0.00 3.50
2641 5723 1.962822 CCTTGCTGTGAAGCTCGCA 60.963 57.895 0.00 0.00 35.36 5.10
2691 5983 1.145945 TCTCTCTGTATCTCCCGCCAT 59.854 52.381 0.00 0.00 0.00 4.40
2697 5989 6.695278 CGTTTTCTTCATCTCTCTGTATCTCC 59.305 42.308 0.00 0.00 0.00 3.71
2757 6050 3.148279 GAGCACCCGACCTCCGAT 61.148 66.667 0.00 0.00 41.76 4.18
2806 7535 0.033796 TGGTAAGGGAGGATCGACGT 60.034 55.000 0.00 0.00 34.37 4.34
2809 7538 0.337082 TGGTGGTAAGGGAGGATCGA 59.663 55.000 0.00 0.00 34.37 3.59
2874 8830 5.726980 ATTGCAACAAGAGCTTTATTCCA 57.273 34.783 0.00 0.00 0.00 3.53
2875 8831 6.856895 ACTATTGCAACAAGAGCTTTATTCC 58.143 36.000 15.62 0.00 0.00 3.01
2911 10930 7.293402 TCTTTGCAACAAGAGATTTGTTTTG 57.707 32.000 0.00 0.00 40.30 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.