Multiple sequence alignment - TraesCS3D01G498300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G498300 chr3D 100.000 3344 0 0 1 3344 589216394 589219737 0.000000e+00 6176.0
1 TraesCS3D01G498300 chr3D 87.774 1734 159 24 680 2363 588835356 588833626 0.000000e+00 1978.0
2 TraesCS3D01G498300 chr3D 90.141 142 14 0 3154 3295 588831492 588831351 5.700000e-43 185.0
3 TraesCS3D01G498300 chr3D 90.526 95 5 4 2475 2566 336539264 336539171 4.530000e-24 122.0
4 TraesCS3D01G498300 chr3A 88.700 1646 125 31 788 2378 719110181 719108542 0.000000e+00 1953.0
5 TraesCS3D01G498300 chr3A 96.250 80 3 0 1325 1404 572568170 572568249 7.530000e-27 132.0
6 TraesCS3D01G498300 chr3B 91.279 1376 104 8 985 2345 787567960 787566586 0.000000e+00 1862.0
7 TraesCS3D01G498300 chr3B 85.795 880 113 9 4 879 787796722 787797593 0.000000e+00 922.0
8 TraesCS3D01G498300 chr3B 84.780 887 113 15 30 906 787569025 787568151 0.000000e+00 870.0
9 TraesCS3D01G498300 chr3B 93.137 510 34 1 1574 2083 787443407 787442899 0.000000e+00 747.0
10 TraesCS3D01G498300 chr3B 88.747 471 43 7 985 1446 787459458 787458989 4.840000e-158 568.0
11 TraesCS3D01G498300 chr3B 80.092 653 101 24 2701 3340 787821552 787822188 3.040000e-125 459.0
12 TraesCS3D01G498300 chr3B 85.714 434 49 8 469 901 787790305 787790726 2.370000e-121 446.0
13 TraesCS3D01G498300 chr3B 85.443 316 33 5 985 1288 787797672 787797986 1.940000e-82 316.0
14 TraesCS3D01G498300 chr3B 81.407 398 63 7 30 424 787691644 787692033 6.960000e-82 315.0
15 TraesCS3D01G498300 chr3B 94.180 189 10 1 1907 2095 787797992 787798179 1.520000e-73 287.0
16 TraesCS3D01G498300 chr3B 86.508 252 34 0 2099 2350 787441250 787440999 9.140000e-71 278.0
17 TraesCS3D01G498300 chr3B 88.953 172 16 1 1021 1189 787790737 787790908 3.380000e-50 209.0
18 TraesCS3D01G498300 chr3B 85.938 128 18 0 1282 1409 763308061 763307934 1.620000e-28 137.0
19 TraesCS3D01G498300 chr2D 93.023 129 5 3 1282 1408 156599412 156599286 5.700000e-43 185.0
20 TraesCS3D01G498300 chr2D 91.304 115 8 1 997 1109 559182230 559182116 4.470000e-34 156.0
21 TraesCS3D01G498300 chr2D 86.957 115 7 7 2447 2557 296173786 296173676 4.530000e-24 122.0
22 TraesCS3D01G498300 chr5D 92.920 113 8 0 997 1109 379405675 379405563 7.420000e-37 165.0
23 TraesCS3D01G498300 chr4A 71.542 629 138 32 1727 2336 1913242 1912636 7.530000e-27 132.0
24 TraesCS3D01G498300 chr4A 86.792 106 13 1 2463 2567 150668663 150668558 2.110000e-22 117.0
25 TraesCS3D01G498300 chr4B 92.045 88 5 2 2475 2560 507357772 507357685 4.530000e-24 122.0
26 TraesCS3D01G498300 chr7B 90.323 93 7 2 2470 2560 476201121 476201213 1.630000e-23 121.0
27 TraesCS3D01G498300 chr6D 84.615 117 14 4 2445 2557 85081752 85081868 2.730000e-21 113.0
28 TraesCS3D01G498300 chrUn 84.348 115 13 4 2449 2560 222975879 222975767 1.270000e-19 108.0
29 TraesCS3D01G498300 chrUn 84.348 115 13 4 2449 2560 303648013 303647901 1.270000e-19 108.0
30 TraesCS3D01G498300 chr7D 84.348 115 13 4 2449 2560 624842143 624842031 1.270000e-19 108.0
31 TraesCS3D01G498300 chr1D 89.474 57 5 1 2956 3011 306049684 306049628 1.660000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G498300 chr3D 589216394 589219737 3343 False 6176.000000 6176 100.000000 1 3344 1 chr3D.!!$F1 3343
1 TraesCS3D01G498300 chr3D 588831351 588835356 4005 True 1081.500000 1978 88.957500 680 3295 2 chr3D.!!$R2 2615
2 TraesCS3D01G498300 chr3A 719108542 719110181 1639 True 1953.000000 1953 88.700000 788 2378 1 chr3A.!!$R1 1590
3 TraesCS3D01G498300 chr3B 787566586 787569025 2439 True 1366.000000 1862 88.029500 30 2345 2 chr3B.!!$R4 2315
4 TraesCS3D01G498300 chr3B 787440999 787443407 2408 True 512.500000 747 89.822500 1574 2350 2 chr3B.!!$R3 776
5 TraesCS3D01G498300 chr3B 787796722 787798179 1457 False 508.333333 922 88.472667 4 2095 3 chr3B.!!$F4 2091
6 TraesCS3D01G498300 chr3B 787821552 787822188 636 False 459.000000 459 80.092000 2701 3340 1 chr3B.!!$F2 639
7 TraesCS3D01G498300 chr3B 787790305 787790908 603 False 327.500000 446 87.333500 469 1189 2 chr3B.!!$F3 720

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
347 355 0.033503 CCGGCCACCCCTTTAAATCT 60.034 55.0 2.24 0.0 0.0 2.40 F
960 1119 0.039074 CACCTTCGCGTCTCACTTCT 60.039 55.0 5.77 0.0 0.0 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1221 1410 0.240945 ACGATCGGCCTTTGCTTTTG 59.759 50.0 20.98 0.0 37.74 2.44 R
2798 5804 0.036164 TCGCAACCACAGGCTACATT 59.964 50.0 0.00 0.0 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.923508 TGATCTAGCATATTTAGTTGGACACG 59.076 38.462 0.00 0.00 0.00 4.49
28 29 2.680841 GCATATTTAGTTGGACACGGCA 59.319 45.455 0.00 0.00 0.00 5.69
53 54 6.441093 TGATGTTCATGCACTATTTCCTTC 57.559 37.500 0.00 0.00 0.00 3.46
56 57 4.943705 TGTTCATGCACTATTTCCTTCCTC 59.056 41.667 0.00 0.00 0.00 3.71
92 93 2.943449 GGAACCCTCTCGTTGTCTAG 57.057 55.000 0.00 0.00 0.00 2.43
99 100 2.296471 CCTCTCGTTGTCTAGGTGTTGT 59.704 50.000 0.00 0.00 0.00 3.32
114 115 5.136828 AGGTGTTGTCAATGATGTTGGTAA 58.863 37.500 0.00 0.00 0.00 2.85
118 119 6.747280 GTGTTGTCAATGATGTTGGTAATAGC 59.253 38.462 0.00 0.00 0.00 2.97
124 125 9.224267 GTCAATGATGTTGGTAATAGCTGATAT 57.776 33.333 0.00 0.00 0.00 1.63
125 126 9.223099 TCAATGATGTTGGTAATAGCTGATATG 57.777 33.333 0.00 0.00 0.00 1.78
126 127 9.006839 CAATGATGTTGGTAATAGCTGATATGT 57.993 33.333 0.00 0.00 0.00 2.29
131 132 7.505258 TGTTGGTAATAGCTGATATGTTGCTA 58.495 34.615 0.00 0.00 42.44 3.49
132 133 7.441157 TGTTGGTAATAGCTGATATGTTGCTAC 59.559 37.037 0.00 0.00 41.29 3.58
133 134 7.061566 TGGTAATAGCTGATATGTTGCTACA 57.938 36.000 2.82 2.82 41.29 2.74
134 135 7.505258 TGGTAATAGCTGATATGTTGCTACAA 58.495 34.615 4.79 0.00 41.29 2.41
140 141 3.938963 CTGATATGTTGCTACAACGGGTT 59.061 43.478 4.79 0.00 37.91 4.11
141 142 5.087391 TGATATGTTGCTACAACGGGTTA 57.913 39.130 4.79 0.00 37.91 2.85
143 144 5.756347 TGATATGTTGCTACAACGGGTTATC 59.244 40.000 4.79 7.57 37.91 1.75
145 146 2.303600 TGTTGCTACAACGGGTTATCCT 59.696 45.455 0.00 0.00 0.00 3.24
174 175 2.765502 GTGATCCCTAAGGGTCCTCTT 58.234 52.381 1.68 0.00 44.74 2.85
175 176 2.701423 GTGATCCCTAAGGGTCCTCTTC 59.299 54.545 1.68 0.00 44.74 2.87
213 214 6.112734 CCTGGTTGTGTGCATCTTAATAGTA 58.887 40.000 0.00 0.00 0.00 1.82
214 215 6.037172 CCTGGTTGTGTGCATCTTAATAGTAC 59.963 42.308 0.00 0.00 0.00 2.73
215 216 6.468543 TGGTTGTGTGCATCTTAATAGTACA 58.531 36.000 0.00 0.00 0.00 2.90
226 227 7.436673 GCATCTTAATAGTACAGAAGTCAGGTG 59.563 40.741 0.00 0.00 0.00 4.00
234 235 4.060038 ACAGAAGTCAGGTGTGTACTTG 57.940 45.455 0.00 0.00 33.72 3.16
252 255 7.953710 GTGTACTTGTTGTATTTTGTACCGATC 59.046 37.037 0.00 0.00 33.23 3.69
255 258 8.836268 ACTTGTTGTATTTTGTACCGATCTAA 57.164 30.769 0.00 0.00 0.00 2.10
258 261 8.203937 TGTTGTATTTTGTACCGATCTAATGG 57.796 34.615 0.00 0.00 0.00 3.16
301 304 2.531685 CCACCCCTCCCTTGACCA 60.532 66.667 0.00 0.00 0.00 4.02
303 306 1.609783 CACCCCTCCCTTGACCATC 59.390 63.158 0.00 0.00 0.00 3.51
310 313 2.370189 CCTCCCTTGACCATCACCTATC 59.630 54.545 0.00 0.00 0.00 2.08
317 320 1.070758 GACCATCACCTATCGCCATGT 59.929 52.381 0.00 0.00 0.00 3.21
319 322 2.146342 CCATCACCTATCGCCATGTTC 58.854 52.381 0.00 0.00 0.00 3.18
322 325 1.067060 TCACCTATCGCCATGTTCTCG 59.933 52.381 0.00 0.00 0.00 4.04
346 354 1.040893 CCCGGCCACCCCTTTAAATC 61.041 60.000 2.24 0.00 0.00 2.17
347 355 0.033503 CCGGCCACCCCTTTAAATCT 60.034 55.000 2.24 0.00 0.00 2.40
351 359 1.288037 GCCACCCCTTTAAATCTCCCT 59.712 52.381 0.00 0.00 0.00 4.20
358 366 3.394940 CCCTTTAAATCTCCCTACCTCCC 59.605 52.174 0.00 0.00 0.00 4.30
369 377 2.622452 CCCTACCTCCCGTTCTTCTACA 60.622 54.545 0.00 0.00 0.00 2.74
370 378 3.297736 CCTACCTCCCGTTCTTCTACAT 58.702 50.000 0.00 0.00 0.00 2.29
376 384 1.560923 CCGTTCTTCTACATCGCCAG 58.439 55.000 0.00 0.00 0.00 4.85
407 415 2.529136 CCCCTCCACCTGTCCACA 60.529 66.667 0.00 0.00 0.00 4.17
410 418 1.071471 CCTCCACCTGTCCACACAC 59.929 63.158 0.00 0.00 0.00 3.82
414 422 2.367648 ACCTGTCCACACACCCCA 60.368 61.111 0.00 0.00 0.00 4.96
427 435 1.854280 ACACCCCAAACCCTCAACTTA 59.146 47.619 0.00 0.00 0.00 2.24
453 461 1.300620 CTTCCACCTGCGACGTCAA 60.301 57.895 17.16 1.73 0.00 3.18
456 464 1.374125 CCACCTGCGACGTCAATGA 60.374 57.895 17.16 0.00 0.00 2.57
505 514 3.740397 CGAGGTCACGCCACGGTA 61.740 66.667 0.00 0.00 45.55 4.02
506 515 2.652530 GAGGTCACGCCACGGTAA 59.347 61.111 0.00 0.00 40.61 2.85
549 558 2.916181 CCCTACCCCCGATCGACC 60.916 72.222 18.66 0.00 0.00 4.79
594 603 6.812656 CAGTTGCCTATGAAATAACAATTGCA 59.187 34.615 5.05 0.00 31.13 4.08
639 648 1.072505 ATGGCGGTGAAGTCGGTTT 59.927 52.632 0.00 0.00 0.00 3.27
640 649 0.953960 ATGGCGGTGAAGTCGGTTTC 60.954 55.000 0.00 0.00 0.00 2.78
650 659 0.600255 AGTCGGTTTCGAGCTTGTGG 60.600 55.000 0.00 0.00 46.91 4.17
666 675 5.183228 GCTTGTGGCTATAAACCTAACTGA 58.817 41.667 0.00 0.00 38.06 3.41
708 717 4.072131 TCTCCAAAGCCATGACAAGTTAC 58.928 43.478 0.00 0.00 0.00 2.50
774 785 4.021925 GAGCCTTCGCCACCTGGT 62.022 66.667 0.00 0.00 37.57 4.00
782 793 2.730094 GCCACCTGGTTGCAACAG 59.270 61.111 29.55 22.46 37.57 3.16
816 828 4.861462 GCCTACCTACTTTCTTTGTACGAC 59.139 45.833 0.00 0.00 0.00 4.34
819 831 5.526506 ACCTACTTTCTTTGTACGACTGT 57.473 39.130 0.00 0.00 0.00 3.55
820 832 6.639632 ACCTACTTTCTTTGTACGACTGTA 57.360 37.500 0.00 0.00 0.00 2.74
867 880 0.953471 TCAACCGGCCAAAGTCATCG 60.953 55.000 0.00 0.00 0.00 3.84
888 913 4.569023 CATGCATGGCAGCGGCAG 62.569 66.667 19.40 0.72 43.65 4.85
911 1051 7.436673 GCAGAGAATTCTTGGCCTATATATACG 59.563 40.741 9.87 0.00 0.00 3.06
913 1053 6.273825 AGAATTCTTGGCCTATATATACGCG 58.726 40.000 3.53 3.53 0.00 6.01
956 1102 3.112709 GCCACCTTCGCGTCTCAC 61.113 66.667 5.77 0.00 0.00 3.51
960 1119 0.039074 CACCTTCGCGTCTCACTTCT 60.039 55.000 5.77 0.00 0.00 2.85
982 1141 8.801882 TTCTCCATCCTTAATTTATCACGTTT 57.198 30.769 0.00 0.00 0.00 3.60
987 1146 8.273557 CCATCCTTAATTTATCACGTTTACGAG 58.726 37.037 9.53 0.95 43.02 4.18
993 1152 6.807708 ATTTATCACGTTTACGAGCACTAG 57.192 37.500 9.53 0.00 43.02 2.57
1010 1187 2.301346 CTAGGCAACCATGTCCATTCC 58.699 52.381 0.00 0.00 37.17 3.01
1024 1201 3.456277 GTCCATTCCAAGACTATCCACCT 59.544 47.826 0.00 0.00 0.00 4.00
1031 1208 2.761208 CAAGACTATCCACCTTCCTCGT 59.239 50.000 0.00 0.00 0.00 4.18
1112 1292 3.983494 ACGCTCACACTCGCTGCT 61.983 61.111 0.00 0.00 0.00 4.24
1236 1425 0.827368 AAACCAAAAGCAAAGGCCGA 59.173 45.000 0.00 0.00 42.56 5.54
1410 1599 3.307906 CCCAAGTCGTCCCCGTCA 61.308 66.667 0.00 0.00 35.01 4.35
1701 1890 2.650116 GCCGCTCTCCTTCCTGTCA 61.650 63.158 0.00 0.00 0.00 3.58
1724 1913 1.183676 ACGAAGGACACCTACGGCTT 61.184 55.000 0.00 0.00 31.13 4.35
1830 2019 3.964221 TAAGACGACGCCGCTGCTG 62.964 63.158 0.00 0.00 39.95 4.41
1989 2178 2.281484 ACCATGTTCACGCGGCTT 60.281 55.556 12.47 0.00 0.00 4.35
2095 3911 3.116531 GCTACAACGTGACCGGCC 61.117 66.667 0.00 0.00 38.78 6.13
2096 3912 2.654877 CTACAACGTGACCGGCCT 59.345 61.111 0.00 0.00 38.78 5.19
2127 3949 1.275657 CGTGACGTTCGCTTTTGCT 59.724 52.632 0.00 0.00 44.80 3.91
2187 4009 1.135915 GTGATGATCCACAGCTCGTCT 59.864 52.381 0.00 0.00 37.04 4.18
2197 4019 4.357947 GCTCGTCTGGCGGTGTCA 62.358 66.667 0.30 0.00 41.72 3.58
2250 4072 2.746277 GTGAACGCCGGGCTCAAT 60.746 61.111 18.34 0.00 0.00 2.57
2283 4105 2.281070 CAGCAGCAGAACCACCGT 60.281 61.111 0.00 0.00 0.00 4.83
2346 4168 0.835276 AGCTATGCACTGCCTGATCA 59.165 50.000 8.87 0.00 0.00 2.92
2351 4173 4.142665 GCTATGCACTGCCTGATCAATATG 60.143 45.833 0.00 0.00 0.00 1.78
2374 4196 2.361407 CGCGCGAAGAGTAACTAGTAC 58.639 52.381 28.94 0.00 0.00 2.73
2378 4200 2.939103 GCGAAGAGTAACTAGTACGGGA 59.061 50.000 0.00 0.00 37.81 5.14
2380 4202 4.142600 GCGAAGAGTAACTAGTACGGGAAA 60.143 45.833 0.00 0.00 37.81 3.13
2382 4204 6.558909 CGAAGAGTAACTAGTACGGGAAAAT 58.441 40.000 0.00 0.00 37.81 1.82
2383 4205 6.690528 CGAAGAGTAACTAGTACGGGAAAATC 59.309 42.308 0.00 0.00 37.81 2.17
2385 4207 7.332213 AGAGTAACTAGTACGGGAAAATCTC 57.668 40.000 0.00 0.00 37.81 2.75
2387 4209 4.382345 AACTAGTACGGGAAAATCTCGG 57.618 45.455 4.50 0.00 46.41 4.63
2389 4211 2.955477 AGTACGGGAAAATCTCGGTC 57.045 50.000 4.50 0.00 46.41 4.79
2390 4212 1.133790 AGTACGGGAAAATCTCGGTCG 59.866 52.381 4.50 0.00 46.41 4.79
2391 4213 1.133025 GTACGGGAAAATCTCGGTCGA 59.867 52.381 4.50 0.00 46.41 4.20
2392 4214 0.822164 ACGGGAAAATCTCGGTCGAT 59.178 50.000 4.50 0.00 46.41 3.59
2393 4215 1.202382 ACGGGAAAATCTCGGTCGATC 60.202 52.381 4.50 0.00 46.41 3.69
2394 4216 1.202371 CGGGAAAATCTCGGTCGATCA 60.202 52.381 0.00 0.00 36.56 2.92
2395 4217 2.737359 CGGGAAAATCTCGGTCGATCAA 60.737 50.000 0.00 0.00 36.56 2.57
2396 4218 3.267483 GGGAAAATCTCGGTCGATCAAA 58.733 45.455 0.00 0.00 0.00 2.69
2398 4220 4.436986 GGGAAAATCTCGGTCGATCAAAAC 60.437 45.833 0.00 0.00 0.00 2.43
2400 4222 5.106673 GGAAAATCTCGGTCGATCAAAACTT 60.107 40.000 0.00 0.00 0.00 2.66
2401 4223 6.091713 GGAAAATCTCGGTCGATCAAAACTTA 59.908 38.462 0.00 0.00 0.00 2.24
2402 4224 7.360607 GGAAAATCTCGGTCGATCAAAACTTAA 60.361 37.037 0.00 0.00 0.00 1.85
2403 4225 6.404712 AATCTCGGTCGATCAAAACTTAAC 57.595 37.500 0.00 0.00 0.00 2.01
2404 4226 4.240096 TCTCGGTCGATCAAAACTTAACC 58.760 43.478 0.00 0.00 0.00 2.85
2405 4227 3.991773 CTCGGTCGATCAAAACTTAACCA 59.008 43.478 0.00 0.00 0.00 3.67
2407 4229 4.815308 TCGGTCGATCAAAACTTAACCAAA 59.185 37.500 0.00 0.00 0.00 3.28
2408 4230 5.470777 TCGGTCGATCAAAACTTAACCAAAT 59.529 36.000 0.00 0.00 0.00 2.32
2409 4231 5.793457 CGGTCGATCAAAACTTAACCAAATC 59.207 40.000 0.00 0.00 0.00 2.17
2410 4232 6.348213 CGGTCGATCAAAACTTAACCAAATCT 60.348 38.462 0.00 0.00 0.00 2.40
2411 4233 7.021790 GGTCGATCAAAACTTAACCAAATCTC 58.978 38.462 0.00 0.00 0.00 2.75
2412 4234 7.308348 GGTCGATCAAAACTTAACCAAATCTCA 60.308 37.037 0.00 0.00 0.00 3.27
2413 4235 7.746475 GTCGATCAAAACTTAACCAAATCTCAG 59.254 37.037 0.00 0.00 0.00 3.35
2414 4236 7.444183 TCGATCAAAACTTAACCAAATCTCAGT 59.556 33.333 0.00 0.00 0.00 3.41
2415 4237 7.746475 CGATCAAAACTTAACCAAATCTCAGTC 59.254 37.037 0.00 0.00 0.00 3.51
2416 4238 8.697507 ATCAAAACTTAACCAAATCTCAGTCT 57.302 30.769 0.00 0.00 0.00 3.24
2417 4239 7.930217 TCAAAACTTAACCAAATCTCAGTCTG 58.070 34.615 0.00 0.00 0.00 3.51
2418 4240 7.556275 TCAAAACTTAACCAAATCTCAGTCTGT 59.444 33.333 0.00 0.00 0.00 3.41
2419 4241 7.881775 AAACTTAACCAAATCTCAGTCTGTT 57.118 32.000 0.00 0.00 0.00 3.16
2420 4242 8.974060 AAACTTAACCAAATCTCAGTCTGTTA 57.026 30.769 0.00 0.00 0.00 2.41
2421 4243 8.974060 AACTTAACCAAATCTCAGTCTGTTAA 57.026 30.769 0.00 0.00 0.00 2.01
2422 4244 8.608844 ACTTAACCAAATCTCAGTCTGTTAAG 57.391 34.615 14.35 14.35 44.40 1.85
2423 4245 8.429641 ACTTAACCAAATCTCAGTCTGTTAAGA 58.570 33.333 20.01 7.10 42.84 2.10
2437 4259 6.192234 TCTGTTAAGACTTACGTGGAGATC 57.808 41.667 0.00 0.00 0.00 2.75
2438 4260 5.125097 TCTGTTAAGACTTACGTGGAGATCC 59.875 44.000 0.00 0.00 0.00 3.36
2439 4261 4.142534 TGTTAAGACTTACGTGGAGATCCG 60.143 45.833 0.00 0.00 39.43 4.18
2440 4262 2.125773 AGACTTACGTGGAGATCCGT 57.874 50.000 0.00 0.55 40.87 4.69
2441 4263 1.743958 AGACTTACGTGGAGATCCGTG 59.256 52.381 0.00 0.00 37.91 4.94
2442 4264 1.741706 GACTTACGTGGAGATCCGTGA 59.258 52.381 0.00 0.00 37.91 4.35
2443 4265 2.163010 GACTTACGTGGAGATCCGTGAA 59.837 50.000 0.00 0.00 37.91 3.18
2444 4266 2.559668 ACTTACGTGGAGATCCGTGAAA 59.440 45.455 0.00 0.00 37.91 2.69
2445 4267 3.194968 ACTTACGTGGAGATCCGTGAAAT 59.805 43.478 0.00 0.00 37.91 2.17
2446 4268 2.762535 ACGTGGAGATCCGTGAAATT 57.237 45.000 0.00 0.00 39.43 1.82
2447 4269 3.053831 ACGTGGAGATCCGTGAAATTT 57.946 42.857 0.00 0.00 39.43 1.82
2448 4270 3.408634 ACGTGGAGATCCGTGAAATTTT 58.591 40.909 0.00 0.00 39.43 1.82
2449 4271 3.818773 ACGTGGAGATCCGTGAAATTTTT 59.181 39.130 0.00 0.00 39.43 1.94
2450 4272 4.083484 ACGTGGAGATCCGTGAAATTTTTC 60.083 41.667 0.00 0.00 39.43 2.29
2451 4273 4.154195 CGTGGAGATCCGTGAAATTTTTCT 59.846 41.667 4.80 0.00 39.43 2.52
2452 4274 5.334879 CGTGGAGATCCGTGAAATTTTTCTT 60.335 40.000 4.80 0.00 39.43 2.52
2453 4275 6.447162 GTGGAGATCCGTGAAATTTTTCTTT 58.553 36.000 4.80 0.00 39.43 2.52
2454 4276 6.923508 GTGGAGATCCGTGAAATTTTTCTTTT 59.076 34.615 4.80 0.00 39.43 2.27
2455 4277 7.438160 GTGGAGATCCGTGAAATTTTTCTTTTT 59.562 33.333 4.80 0.00 39.43 1.94
2456 4278 7.437862 TGGAGATCCGTGAAATTTTTCTTTTTG 59.562 33.333 4.80 0.00 39.43 2.44
2457 4279 7.651704 GGAGATCCGTGAAATTTTTCTTTTTGA 59.348 33.333 4.80 0.00 38.02 2.69
2458 4280 8.352752 AGATCCGTGAAATTTTTCTTTTTGAC 57.647 30.769 4.80 0.00 38.02 3.18
2459 4281 8.197439 AGATCCGTGAAATTTTTCTTTTTGACT 58.803 29.630 4.80 0.00 38.02 3.41
2460 4282 8.716646 ATCCGTGAAATTTTTCTTTTTGACTT 57.283 26.923 4.80 0.00 38.02 3.01
2461 4283 8.541133 TCCGTGAAATTTTTCTTTTTGACTTT 57.459 26.923 4.80 0.00 38.02 2.66
2462 4284 8.652463 TCCGTGAAATTTTTCTTTTTGACTTTC 58.348 29.630 4.80 0.00 38.02 2.62
2463 4285 8.655970 CCGTGAAATTTTTCTTTTTGACTTTCT 58.344 29.630 4.80 0.00 38.02 2.52
2479 4301 9.543783 TTTGACTTTCTTCTTCTTTAGTACTCC 57.456 33.333 0.00 0.00 0.00 3.85
2480 4302 7.668492 TGACTTTCTTCTTCTTTAGTACTCCC 58.332 38.462 0.00 0.00 0.00 4.30
2481 4303 7.509659 TGACTTTCTTCTTCTTTAGTACTCCCT 59.490 37.037 0.00 0.00 0.00 4.20
2482 4304 7.898918 ACTTTCTTCTTCTTTAGTACTCCCTC 58.101 38.462 0.00 0.00 0.00 4.30
2483 4305 7.731235 ACTTTCTTCTTCTTTAGTACTCCCTCT 59.269 37.037 0.00 0.00 0.00 3.69
2484 4306 7.469537 TTCTTCTTCTTTAGTACTCCCTCTG 57.530 40.000 0.00 0.00 0.00 3.35
2485 4307 6.553857 TCTTCTTCTTTAGTACTCCCTCTGT 58.446 40.000 0.00 0.00 0.00 3.41
2486 4308 6.660094 TCTTCTTCTTTAGTACTCCCTCTGTC 59.340 42.308 0.00 0.00 0.00 3.51
2487 4309 5.262804 TCTTCTTTAGTACTCCCTCTGTCC 58.737 45.833 0.00 0.00 0.00 4.02
2488 4310 3.978610 TCTTTAGTACTCCCTCTGTCCC 58.021 50.000 0.00 0.00 0.00 4.46
2489 4311 3.335786 TCTTTAGTACTCCCTCTGTCCCA 59.664 47.826 0.00 0.00 0.00 4.37
2490 4312 4.016479 TCTTTAGTACTCCCTCTGTCCCAT 60.016 45.833 0.00 0.00 0.00 4.00
2491 4313 5.195146 TCTTTAGTACTCCCTCTGTCCCATA 59.805 44.000 0.00 0.00 0.00 2.74
2492 4314 5.476950 TTAGTACTCCCTCTGTCCCATAA 57.523 43.478 0.00 0.00 0.00 1.90
2493 4315 4.561254 AGTACTCCCTCTGTCCCATAAT 57.439 45.455 0.00 0.00 0.00 1.28
2494 4316 5.681494 AGTACTCCCTCTGTCCCATAATA 57.319 43.478 0.00 0.00 0.00 0.98
2495 4317 5.646215 AGTACTCCCTCTGTCCCATAATAG 58.354 45.833 0.00 0.00 0.00 1.73
2496 4318 4.834406 ACTCCCTCTGTCCCATAATAGA 57.166 45.455 0.00 0.00 0.00 1.98
2497 4319 5.157770 ACTCCCTCTGTCCCATAATAGAA 57.842 43.478 0.00 0.00 0.00 2.10
2498 4320 5.151454 ACTCCCTCTGTCCCATAATAGAAG 58.849 45.833 0.00 0.00 0.00 2.85
2499 4321 5.103043 ACTCCCTCTGTCCCATAATAGAAGA 60.103 44.000 0.00 0.00 0.00 2.87
2500 4322 5.788430 TCCCTCTGTCCCATAATAGAAGAA 58.212 41.667 0.00 0.00 0.00 2.52
2501 4323 5.602978 TCCCTCTGTCCCATAATAGAAGAAC 59.397 44.000 0.00 0.00 0.00 3.01
2502 4324 5.509840 CCCTCTGTCCCATAATAGAAGAACG 60.510 48.000 0.00 0.00 0.00 3.95
2503 4325 5.069251 CCTCTGTCCCATAATAGAAGAACGT 59.931 44.000 0.00 0.00 0.00 3.99
2504 4326 6.407074 CCTCTGTCCCATAATAGAAGAACGTT 60.407 42.308 0.00 0.00 0.00 3.99
2505 4327 6.942976 TCTGTCCCATAATAGAAGAACGTTT 58.057 36.000 0.46 0.00 0.00 3.60
2506 4328 7.391620 TCTGTCCCATAATAGAAGAACGTTTT 58.608 34.615 0.46 0.00 0.00 2.43
2507 4329 8.533657 TCTGTCCCATAATAGAAGAACGTTTTA 58.466 33.333 0.46 0.00 0.00 1.52
2508 4330 8.712285 TGTCCCATAATAGAAGAACGTTTTAG 57.288 34.615 0.46 0.00 0.00 1.85
2509 4331 7.279313 TGTCCCATAATAGAAGAACGTTTTAGC 59.721 37.037 0.46 0.00 0.00 3.09
2510 4332 7.279313 GTCCCATAATAGAAGAACGTTTTAGCA 59.721 37.037 0.46 0.00 0.00 3.49
2511 4333 7.494625 TCCCATAATAGAAGAACGTTTTAGCAG 59.505 37.037 0.46 0.00 0.00 4.24
2512 4334 7.280205 CCCATAATAGAAGAACGTTTTAGCAGT 59.720 37.037 0.46 0.00 0.00 4.40
2513 4335 9.309516 CCATAATAGAAGAACGTTTTAGCAGTA 57.690 33.333 0.46 0.00 0.00 2.74
2516 4338 7.813852 ATAGAAGAACGTTTTAGCAGTAGTG 57.186 36.000 0.46 0.00 0.00 2.74
2517 4339 5.598769 AGAAGAACGTTTTAGCAGTAGTGT 58.401 37.500 0.46 0.00 0.00 3.55
2518 4340 6.742109 AGAAGAACGTTTTAGCAGTAGTGTA 58.258 36.000 0.46 0.00 0.00 2.90
2519 4341 6.862090 AGAAGAACGTTTTAGCAGTAGTGTAG 59.138 38.462 0.46 0.00 0.00 2.74
2520 4342 6.081872 AGAACGTTTTAGCAGTAGTGTAGT 57.918 37.500 0.46 0.00 0.00 2.73
2521 4343 5.919141 AGAACGTTTTAGCAGTAGTGTAGTG 59.081 40.000 0.46 0.00 0.00 2.74
2532 4354 6.137227 CAGTAGTGTAGTGCTAAAACGTTC 57.863 41.667 0.00 0.00 0.00 3.95
2533 4355 5.919141 CAGTAGTGTAGTGCTAAAACGTTCT 59.081 40.000 0.00 0.00 0.00 3.01
2534 4356 6.420008 CAGTAGTGTAGTGCTAAAACGTTCTT 59.580 38.462 0.00 1.04 0.00 2.52
2535 4357 7.592533 CAGTAGTGTAGTGCTAAAACGTTCTTA 59.407 37.037 0.00 2.24 0.00 2.10
2536 4358 8.302438 AGTAGTGTAGTGCTAAAACGTTCTTAT 58.698 33.333 0.00 0.00 0.00 1.73
2537 4359 9.559958 GTAGTGTAGTGCTAAAACGTTCTTATA 57.440 33.333 0.00 0.00 0.00 0.98
2539 4361 9.649167 AGTGTAGTGCTAAAACGTTCTTATATT 57.351 29.630 0.00 0.00 0.00 1.28
2544 4366 9.052759 AGTGCTAAAACGTTCTTATATTATGGG 57.947 33.333 0.00 0.00 0.00 4.00
2545 4367 9.048446 GTGCTAAAACGTTCTTATATTATGGGA 57.952 33.333 0.00 0.00 0.00 4.37
2546 4368 9.048446 TGCTAAAACGTTCTTATATTATGGGAC 57.952 33.333 0.00 0.00 0.00 4.46
2547 4369 8.219105 GCTAAAACGTTCTTATATTATGGGACG 58.781 37.037 0.00 9.33 0.00 4.79
2548 4370 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
2549 4371 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
2550 4372 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
2551 4373 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
2552 4374 5.184479 CGTTCTTATATTATGGGACGGAGGA 59.816 44.000 0.00 0.00 0.00 3.71
2553 4375 6.294899 CGTTCTTATATTATGGGACGGAGGAA 60.295 42.308 0.00 0.00 0.00 3.36
2554 4376 6.852420 TCTTATATTATGGGACGGAGGAAG 57.148 41.667 0.00 0.00 0.00 3.46
2555 4377 6.320518 TCTTATATTATGGGACGGAGGAAGT 58.679 40.000 0.00 0.00 0.00 3.01
2556 4378 7.472741 TCTTATATTATGGGACGGAGGAAGTA 58.527 38.462 0.00 0.00 0.00 2.24
2557 4379 5.997384 ATATTATGGGACGGAGGAAGTAC 57.003 43.478 0.00 0.00 0.00 2.73
2558 4380 2.832643 TATGGGACGGAGGAAGTACA 57.167 50.000 0.00 0.00 0.00 2.90
2559 4381 2.176247 ATGGGACGGAGGAAGTACAT 57.824 50.000 0.00 0.00 0.00 2.29
2560 4382 1.191535 TGGGACGGAGGAAGTACATG 58.808 55.000 0.00 0.00 0.00 3.21
2561 4383 0.179081 GGGACGGAGGAAGTACATGC 60.179 60.000 0.00 0.00 0.00 4.06
2562 4384 0.824759 GGACGGAGGAAGTACATGCT 59.175 55.000 0.00 0.00 0.00 3.79
2563 4385 2.029623 GGACGGAGGAAGTACATGCTA 58.970 52.381 0.00 0.00 0.00 3.49
2564 4386 2.628657 GGACGGAGGAAGTACATGCTAT 59.371 50.000 0.00 0.00 0.00 2.97
2565 4387 3.553096 GGACGGAGGAAGTACATGCTATG 60.553 52.174 0.00 0.00 0.00 2.23
2566 4388 2.224066 ACGGAGGAAGTACATGCTATGC 60.224 50.000 0.00 0.00 0.00 3.14
2567 4389 2.772287 GGAGGAAGTACATGCTATGCC 58.228 52.381 0.00 0.00 0.00 4.40
2568 4390 2.104792 GGAGGAAGTACATGCTATGCCA 59.895 50.000 0.00 0.00 0.00 4.92
2569 4391 3.134458 GAGGAAGTACATGCTATGCCAC 58.866 50.000 0.00 0.00 0.00 5.01
2570 4392 2.774234 AGGAAGTACATGCTATGCCACT 59.226 45.455 0.00 0.00 32.21 4.00
2571 4393 3.200825 AGGAAGTACATGCTATGCCACTT 59.799 43.478 12.36 12.36 39.86 3.16
2572 4394 3.313526 GGAAGTACATGCTATGCCACTTG 59.686 47.826 15.16 0.00 38.32 3.16
2573 4395 3.912496 AGTACATGCTATGCCACTTGA 57.088 42.857 0.00 0.00 0.00 3.02
2574 4396 3.535561 AGTACATGCTATGCCACTTGAC 58.464 45.455 0.00 0.00 0.00 3.18
2575 4397 1.372582 ACATGCTATGCCACTTGACG 58.627 50.000 0.00 0.00 0.00 4.35
2576 4398 1.066215 ACATGCTATGCCACTTGACGA 60.066 47.619 0.00 0.00 0.00 4.20
2577 4399 2.009051 CATGCTATGCCACTTGACGAA 58.991 47.619 0.00 0.00 0.00 3.85
2578 4400 1.725641 TGCTATGCCACTTGACGAAG 58.274 50.000 0.00 0.00 35.07 3.79
2579 4401 1.275010 TGCTATGCCACTTGACGAAGA 59.725 47.619 0.00 0.00 32.98 2.87
2580 4402 1.661112 GCTATGCCACTTGACGAAGAC 59.339 52.381 0.00 0.00 32.98 3.01
2581 4403 2.675317 GCTATGCCACTTGACGAAGACT 60.675 50.000 0.00 0.00 32.98 3.24
2582 4404 2.550830 ATGCCACTTGACGAAGACTT 57.449 45.000 0.00 0.00 32.98 3.01
2583 4405 1.581934 TGCCACTTGACGAAGACTTG 58.418 50.000 0.00 0.00 32.98 3.16
2584 4406 0.868406 GCCACTTGACGAAGACTTGG 59.132 55.000 0.00 0.00 32.98 3.61
2585 4407 1.810412 GCCACTTGACGAAGACTTGGT 60.810 52.381 2.09 2.09 32.98 3.67
2586 4408 2.561569 CCACTTGACGAAGACTTGGTT 58.438 47.619 4.22 0.00 32.98 3.67
2587 4409 3.724374 CCACTTGACGAAGACTTGGTTA 58.276 45.455 4.22 0.00 32.98 2.85
2588 4410 4.124238 CCACTTGACGAAGACTTGGTTAA 58.876 43.478 4.22 5.92 32.98 2.01
2589 4411 4.573201 CCACTTGACGAAGACTTGGTTAAA 59.427 41.667 4.22 2.55 32.98 1.52
2590 4412 5.238650 CCACTTGACGAAGACTTGGTTAAAT 59.761 40.000 4.22 0.00 32.98 1.40
2591 4413 6.238648 CCACTTGACGAAGACTTGGTTAAATT 60.239 38.462 4.22 0.00 32.98 1.82
2592 4414 7.193595 CACTTGACGAAGACTTGGTTAAATTT 58.806 34.615 4.22 0.00 32.98 1.82
2593 4415 7.165812 CACTTGACGAAGACTTGGTTAAATTTG 59.834 37.037 4.22 1.66 32.98 2.32
2594 4416 6.928979 TGACGAAGACTTGGTTAAATTTGA 57.071 33.333 4.22 0.00 0.00 2.69
2595 4417 7.323049 TGACGAAGACTTGGTTAAATTTGAA 57.677 32.000 4.22 0.00 0.00 2.69
2596 4418 7.936584 TGACGAAGACTTGGTTAAATTTGAAT 58.063 30.769 4.22 0.00 0.00 2.57
2597 4419 8.073768 TGACGAAGACTTGGTTAAATTTGAATC 58.926 33.333 4.22 0.00 0.00 2.52
2598 4420 7.075741 ACGAAGACTTGGTTAAATTTGAATCG 58.924 34.615 0.00 0.00 0.00 3.34
2599 4421 7.041644 ACGAAGACTTGGTTAAATTTGAATCGA 60.042 33.333 0.00 0.00 0.00 3.59
2600 4422 7.268447 CGAAGACTTGGTTAAATTTGAATCGAC 59.732 37.037 0.00 0.00 0.00 4.20
2601 4423 7.745620 AGACTTGGTTAAATTTGAATCGACT 57.254 32.000 0.00 0.00 0.00 4.18
2602 4424 8.842358 AGACTTGGTTAAATTTGAATCGACTA 57.158 30.769 0.00 0.00 0.00 2.59
2603 4425 9.280174 AGACTTGGTTAAATTTGAATCGACTAA 57.720 29.630 0.00 0.00 0.00 2.24
2604 4426 9.543018 GACTTGGTTAAATTTGAATCGACTAAG 57.457 33.333 0.00 6.20 32.57 2.18
2605 4427 9.280174 ACTTGGTTAAATTTGAATCGACTAAGA 57.720 29.630 0.00 0.00 31.36 2.10
2606 4428 9.543018 CTTGGTTAAATTTGAATCGACTAAGAC 57.457 33.333 0.00 0.00 0.00 3.01
2607 4429 8.036273 TGGTTAAATTTGAATCGACTAAGACC 57.964 34.615 0.00 0.00 0.00 3.85
2608 4430 7.881232 TGGTTAAATTTGAATCGACTAAGACCT 59.119 33.333 0.00 0.00 0.00 3.85
2609 4431 9.374838 GGTTAAATTTGAATCGACTAAGACCTA 57.625 33.333 0.00 0.00 0.00 3.08
2614 4436 9.804758 AATTTGAATCGACTAAGACCTAACTAG 57.195 33.333 0.00 0.00 0.00 2.57
2615 4437 7.934855 TTGAATCGACTAAGACCTAACTAGT 57.065 36.000 0.00 0.00 0.00 2.57
2616 4438 9.453572 TTTGAATCGACTAAGACCTAACTAGTA 57.546 33.333 0.00 0.00 0.00 1.82
2617 4439 9.624373 TTGAATCGACTAAGACCTAACTAGTAT 57.376 33.333 0.00 0.00 0.00 2.12
2618 4440 9.053840 TGAATCGACTAAGACCTAACTAGTATG 57.946 37.037 0.00 0.00 0.00 2.39
2619 4441 8.977267 AATCGACTAAGACCTAACTAGTATGT 57.023 34.615 0.00 0.00 0.00 2.29
2621 4443 8.879342 TCGACTAAGACCTAACTAGTATGTAC 57.121 38.462 0.00 0.00 0.00 2.90
2622 4444 8.700051 TCGACTAAGACCTAACTAGTATGTACT 58.300 37.037 0.00 0.00 40.24 2.73
2623 4445 8.977505 CGACTAAGACCTAACTAGTATGTACTC 58.022 40.741 0.00 0.00 37.73 2.59
2624 4446 9.271828 GACTAAGACCTAACTAGTATGTACTCC 57.728 40.741 0.00 0.00 37.73 3.85
2625 4447 8.217111 ACTAAGACCTAACTAGTATGTACTCCC 58.783 40.741 0.00 0.00 37.73 4.30
2626 4448 6.587560 AGACCTAACTAGTATGTACTCCCA 57.412 41.667 0.00 0.00 37.73 4.37
2627 4449 7.164233 AGACCTAACTAGTATGTACTCCCAT 57.836 40.000 0.00 0.00 37.73 4.00
2628 4450 7.593653 AGACCTAACTAGTATGTACTCCCATT 58.406 38.462 0.00 0.00 37.73 3.16
2629 4451 7.724951 AGACCTAACTAGTATGTACTCCCATTC 59.275 40.741 0.00 0.00 37.73 2.67
2630 4452 7.359849 ACCTAACTAGTATGTACTCCCATTCA 58.640 38.462 0.00 0.00 37.73 2.57
2631 4453 8.011290 ACCTAACTAGTATGTACTCCCATTCAT 58.989 37.037 0.00 0.00 37.73 2.57
2632 4454 8.307483 CCTAACTAGTATGTACTCCCATTCATG 58.693 40.741 0.00 0.00 37.73 3.07
2633 4455 7.676683 AACTAGTATGTACTCCCATTCATGT 57.323 36.000 0.00 0.00 37.73 3.21
2634 4456 7.291411 ACTAGTATGTACTCCCATTCATGTC 57.709 40.000 0.00 0.00 37.73 3.06
2635 4457 6.839134 ACTAGTATGTACTCCCATTCATGTCA 59.161 38.462 0.00 0.00 37.73 3.58
2636 4458 6.753913 AGTATGTACTCCCATTCATGTCAT 57.246 37.500 0.00 0.00 0.00 3.06
2637 4459 6.763355 AGTATGTACTCCCATTCATGTCATC 58.237 40.000 0.00 0.00 0.00 2.92
2638 4460 4.058721 TGTACTCCCATTCATGTCATCG 57.941 45.455 0.00 0.00 0.00 3.84
2639 4461 3.450817 TGTACTCCCATTCATGTCATCGT 59.549 43.478 0.00 0.00 0.00 3.73
2640 4462 2.910199 ACTCCCATTCATGTCATCGTG 58.090 47.619 0.00 0.00 0.00 4.35
2641 4463 2.237143 ACTCCCATTCATGTCATCGTGT 59.763 45.455 0.00 0.00 32.85 4.49
2642 4464 3.450817 ACTCCCATTCATGTCATCGTGTA 59.549 43.478 0.00 0.00 32.85 2.90
2643 4465 4.101585 ACTCCCATTCATGTCATCGTGTAT 59.898 41.667 0.00 0.00 32.85 2.29
2644 4466 5.034852 TCCCATTCATGTCATCGTGTATT 57.965 39.130 0.00 0.00 32.85 1.89
2645 4467 6.168270 TCCCATTCATGTCATCGTGTATTA 57.832 37.500 0.00 0.00 32.85 0.98
2646 4468 6.768483 TCCCATTCATGTCATCGTGTATTAT 58.232 36.000 0.00 0.00 32.85 1.28
2647 4469 6.650390 TCCCATTCATGTCATCGTGTATTATG 59.350 38.462 0.00 0.00 32.85 1.90
2648 4470 6.309436 CCATTCATGTCATCGTGTATTATGC 58.691 40.000 0.00 0.00 32.85 3.14
2649 4471 6.148315 CCATTCATGTCATCGTGTATTATGCT 59.852 38.462 0.00 0.00 32.85 3.79
2650 4472 7.331687 CCATTCATGTCATCGTGTATTATGCTA 59.668 37.037 0.00 0.00 32.85 3.49
2651 4473 7.637709 TTCATGTCATCGTGTATTATGCTAC 57.362 36.000 0.00 0.00 32.85 3.58
2652 4474 6.981722 TCATGTCATCGTGTATTATGCTACT 58.018 36.000 0.00 0.00 32.85 2.57
2653 4475 7.433680 TCATGTCATCGTGTATTATGCTACTT 58.566 34.615 0.00 0.00 32.85 2.24
2654 4476 7.382218 TCATGTCATCGTGTATTATGCTACTTG 59.618 37.037 0.00 0.00 32.85 3.16
2655 4477 5.983118 TGTCATCGTGTATTATGCTACTTGG 59.017 40.000 0.00 0.00 0.00 3.61
2656 4478 4.988540 TCATCGTGTATTATGCTACTTGGC 59.011 41.667 0.00 0.00 0.00 4.52
2657 4479 4.394439 TCGTGTATTATGCTACTTGGCA 57.606 40.909 0.00 0.00 46.63 4.92
2658 4480 4.368315 TCGTGTATTATGCTACTTGGCAG 58.632 43.478 0.00 0.00 45.75 4.85
2659 4481 4.119862 CGTGTATTATGCTACTTGGCAGT 58.880 43.478 0.00 0.00 45.75 4.40
2660 4482 4.025730 CGTGTATTATGCTACTTGGCAGTG 60.026 45.833 0.00 0.00 45.75 3.66
2661 4483 4.273480 GTGTATTATGCTACTTGGCAGTGG 59.727 45.833 0.00 0.00 45.75 4.00
2662 4484 2.418368 TTATGCTACTTGGCAGTGGG 57.582 50.000 0.00 0.00 45.75 4.61
2663 4485 0.107214 TATGCTACTTGGCAGTGGGC 60.107 55.000 0.00 0.00 45.75 5.36
2670 4492 4.007644 TGGCAGTGGGCAGTCGAG 62.008 66.667 0.00 0.00 45.76 4.04
2672 4494 2.970639 GCAGTGGGCAGTCGAGTA 59.029 61.111 0.00 0.00 43.97 2.59
2673 4495 1.153745 GCAGTGGGCAGTCGAGTAG 60.154 63.158 0.00 0.00 43.97 2.57
2686 4508 6.098017 GCAGTCGAGTAGTAGGTTTGTATTT 58.902 40.000 0.00 0.00 0.00 1.40
2687 4509 6.034683 GCAGTCGAGTAGTAGGTTTGTATTTG 59.965 42.308 0.00 0.00 0.00 2.32
2688 4510 6.034683 CAGTCGAGTAGTAGGTTTGTATTTGC 59.965 42.308 0.00 0.00 0.00 3.68
2690 4512 5.047164 TCGAGTAGTAGGTTTGTATTTGCCA 60.047 40.000 0.00 0.00 0.00 4.92
2691 4513 5.815740 CGAGTAGTAGGTTTGTATTTGCCAT 59.184 40.000 0.00 0.00 0.00 4.40
2692 4514 6.238103 CGAGTAGTAGGTTTGTATTTGCCATG 60.238 42.308 0.00 0.00 0.00 3.66
2694 4516 4.023291 AGTAGGTTTGTATTTGCCATGGG 58.977 43.478 15.13 0.00 0.00 4.00
2697 4519 3.260632 AGGTTTGTATTTGCCATGGGAAC 59.739 43.478 19.51 8.98 0.00 3.62
2721 4543 2.799412 GGTGATTTTGTTTTGCGCATGA 59.201 40.909 12.75 0.00 0.00 3.07
2728 4550 2.993545 TGTTTTGCGCATGACACTAAC 58.006 42.857 12.75 7.94 0.00 2.34
2729 4551 2.616376 TGTTTTGCGCATGACACTAACT 59.384 40.909 12.75 0.00 0.00 2.24
2739 5745 6.243551 CGCATGACACTAACTAAGAAATGTG 58.756 40.000 0.00 0.00 0.00 3.21
2742 5748 7.521529 CATGACACTAACTAAGAAATGTGGTG 58.478 38.462 0.00 0.00 0.00 4.17
2743 5749 6.588204 TGACACTAACTAAGAAATGTGGTGT 58.412 36.000 0.00 0.00 36.99 4.16
2750 5756 5.690865 ACTAAGAAATGTGGTGTTTCTGGA 58.309 37.500 2.27 0.00 43.19 3.86
2752 5758 6.777580 ACTAAGAAATGTGGTGTTTCTGGATT 59.222 34.615 2.27 0.00 43.19 3.01
2761 5767 7.108847 TGTGGTGTTTCTGGATTCAAAATTTT 58.891 30.769 0.00 0.00 0.00 1.82
2798 5804 9.090103 TCTGAAGTTGTATCTTTCTTCTAGGAA 57.910 33.333 0.00 0.00 37.67 3.36
2799 5805 9.712305 CTGAAGTTGTATCTTTCTTCTAGGAAA 57.288 33.333 0.00 0.00 37.67 3.13
2808 5814 6.644347 TCTTTCTTCTAGGAAATGTAGCCTG 58.356 40.000 0.00 0.00 35.12 4.85
2809 5815 6.213600 TCTTTCTTCTAGGAAATGTAGCCTGT 59.786 38.462 0.00 0.00 35.12 4.00
2811 5817 4.162320 TCTTCTAGGAAATGTAGCCTGTGG 59.838 45.833 0.00 0.00 35.73 4.17
2813 5819 3.844211 TCTAGGAAATGTAGCCTGTGGTT 59.156 43.478 0.00 0.00 35.73 3.67
2814 5820 2.795329 AGGAAATGTAGCCTGTGGTTG 58.205 47.619 0.00 0.00 32.06 3.77
2815 5821 1.202348 GGAAATGTAGCCTGTGGTTGC 59.798 52.381 0.00 0.00 0.00 4.17
2816 5822 0.881118 AAATGTAGCCTGTGGTTGCG 59.119 50.000 0.00 0.00 0.00 4.85
2818 5824 0.391661 ATGTAGCCTGTGGTTGCGAG 60.392 55.000 0.00 0.00 0.00 5.03
2819 5825 2.047274 TAGCCTGTGGTTGCGAGC 60.047 61.111 0.00 0.00 0.00 5.03
2855 5863 3.385577 AGTTCGTCTGCTCAAGAAACTC 58.614 45.455 0.00 0.00 32.72 3.01
2863 5871 4.999950 TCTGCTCAAGAAACTCTTCCATTC 59.000 41.667 0.00 0.00 33.78 2.67
2864 5872 4.074970 TGCTCAAGAAACTCTTCCATTCC 58.925 43.478 0.00 0.00 33.78 3.01
2865 5873 3.441922 GCTCAAGAAACTCTTCCATTCCC 59.558 47.826 0.00 0.00 33.78 3.97
2866 5874 4.013050 CTCAAGAAACTCTTCCATTCCCC 58.987 47.826 0.00 0.00 33.78 4.81
2867 5875 3.092301 CAAGAAACTCTTCCATTCCCCC 58.908 50.000 0.00 0.00 33.78 5.40
2868 5876 1.282157 AGAAACTCTTCCATTCCCCCG 59.718 52.381 0.00 0.00 31.28 5.73
2869 5877 0.323451 AAACTCTTCCATTCCCCCGC 60.323 55.000 0.00 0.00 0.00 6.13
2870 5878 1.497309 AACTCTTCCATTCCCCCGCA 61.497 55.000 0.00 0.00 0.00 5.69
2871 5879 1.302949 CTCTTCCATTCCCCCGCAA 59.697 57.895 0.00 0.00 0.00 4.85
2872 5880 0.323360 CTCTTCCATTCCCCCGCAAA 60.323 55.000 0.00 0.00 0.00 3.68
2874 5882 0.972883 CTTCCATTCCCCCGCAAAAA 59.027 50.000 0.00 0.00 0.00 1.94
2921 5942 8.788325 ATACACATCACTTAAACTTCCCTAAC 57.212 34.615 0.00 0.00 0.00 2.34
2926 5947 7.778382 ACATCACTTAAACTTCCCTAACTTTGT 59.222 33.333 0.00 0.00 0.00 2.83
2928 5949 8.667076 TCACTTAAACTTCCCTAACTTTGTAC 57.333 34.615 0.00 0.00 0.00 2.90
2939 5960 8.754991 TCCCTAACTTTGTACTTTCAATGAAA 57.245 30.769 8.25 8.25 0.00 2.69
2945 5966 6.041979 ACTTTGTACTTTCAATGAAATGCCCT 59.958 34.615 9.02 0.00 30.85 5.19
2953 5974 4.603131 TCAATGAAATGCCCTTCTAGCTT 58.397 39.130 0.00 0.00 0.00 3.74
2957 5978 4.770795 TGAAATGCCCTTCTAGCTTAGTC 58.229 43.478 0.00 0.00 0.00 2.59
2983 6004 3.075148 GACCACAAGGCTCTTAACCTTC 58.925 50.000 0.00 0.00 44.35 3.46
3023 6045 3.428862 CCAAGGTGGGCGATAATGTTTTC 60.429 47.826 0.00 0.00 32.67 2.29
3026 6048 4.850680 AGGTGGGCGATAATGTTTTCTTA 58.149 39.130 0.00 0.00 0.00 2.10
3027 6049 5.445964 AGGTGGGCGATAATGTTTTCTTAT 58.554 37.500 0.00 0.00 0.00 1.73
3029 6051 5.067283 GGTGGGCGATAATGTTTTCTTATGT 59.933 40.000 0.00 0.00 0.00 2.29
3031 6053 6.472163 GTGGGCGATAATGTTTTCTTATGTTG 59.528 38.462 0.00 0.00 0.00 3.33
3032 6054 5.458779 GGGCGATAATGTTTTCTTATGTTGC 59.541 40.000 0.00 0.00 0.00 4.17
3034 6056 6.265577 GCGATAATGTTTTCTTATGTTGCCT 58.734 36.000 0.00 0.00 0.00 4.75
3047 6069 7.315142 TCTTATGTTGCCTTTAGCTTTTGATG 58.685 34.615 0.00 0.00 44.23 3.07
3055 6077 6.820656 TGCCTTTAGCTTTTGATGAAACAAAA 59.179 30.769 0.00 0.00 43.90 2.44
3056 6078 7.335422 TGCCTTTAGCTTTTGATGAAACAAAAA 59.665 29.630 0.00 0.00 45.04 1.94
3057 6079 8.344831 GCCTTTAGCTTTTGATGAAACAAAAAT 58.655 29.630 0.00 0.00 45.04 1.82
3062 6084 8.380743 AGCTTTTGATGAAACAAAAATATGCA 57.619 26.923 0.53 0.00 45.04 3.96
3084 6121 5.048713 GCAATGTTCCATATAACTAGGTGGC 60.049 44.000 0.00 0.00 0.00 5.01
3149 6186 5.423015 TCTAGTCACCTTTTGCATCTCATC 58.577 41.667 0.00 0.00 0.00 2.92
3165 6641 6.698766 GCATCTCATCCAAACCACAAATATTC 59.301 38.462 0.00 0.00 0.00 1.75
3172 6648 7.880160 TCCAAACCACAAATATTCCTGATAG 57.120 36.000 0.00 0.00 0.00 2.08
3226 6702 4.495349 CGATGTTCTCCAAGAATCATGCAC 60.495 45.833 0.00 0.00 36.50 4.57
3255 6731 7.753309 AGTTACATAACACCTAATTTGCACA 57.247 32.000 4.67 0.00 38.62 4.57
3266 6742 4.396166 CCTAATTTGCACAAGGTGGACTAG 59.604 45.833 0.00 0.00 32.77 2.57
3296 6772 1.538047 TTGGAAAGCTGCATGAGTCC 58.462 50.000 1.02 1.40 0.00 3.85
3300 6776 3.282021 GGAAAGCTGCATGAGTCCAATA 58.718 45.455 1.02 0.00 0.00 1.90
3302 6778 4.023365 GGAAAGCTGCATGAGTCCAATATC 60.023 45.833 1.02 0.00 0.00 1.63
3306 6783 3.747010 GCTGCATGAGTCCAATATCTGAG 59.253 47.826 0.00 0.00 0.00 3.35
3321 6798 7.042456 CCAATATCTGAGAACCTAACATCGTTG 60.042 40.741 0.00 0.00 0.00 4.10
3323 6800 5.661056 TCTGAGAACCTAACATCGTTGAT 57.339 39.130 0.00 0.00 0.00 2.57
3328 6805 6.535150 TGAGAACCTAACATCGTTGATCATTC 59.465 38.462 0.00 0.00 0.00 2.67
3329 6806 6.406370 AGAACCTAACATCGTTGATCATTCA 58.594 36.000 0.00 0.00 0.00 2.57
3335 6812 4.318332 ACATCGTTGATCATTCACACACT 58.682 39.130 0.00 0.00 0.00 3.55
3336 6813 4.756642 ACATCGTTGATCATTCACACACTT 59.243 37.500 0.00 0.00 0.00 3.16
3338 6815 5.094429 TCGTTGATCATTCACACACTTTG 57.906 39.130 0.00 0.00 0.00 2.77
3339 6816 4.024133 TCGTTGATCATTCACACACTTTGG 60.024 41.667 0.00 0.00 0.00 3.28
3340 6817 3.921119 TGATCATTCACACACTTTGGC 57.079 42.857 0.00 0.00 0.00 4.52
3341 6818 3.489355 TGATCATTCACACACTTTGGCT 58.511 40.909 0.00 0.00 0.00 4.75
3342 6819 3.253921 TGATCATTCACACACTTTGGCTG 59.746 43.478 0.00 0.00 0.00 4.85
3343 6820 2.929641 TCATTCACACACTTTGGCTGA 58.070 42.857 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.923508 CGTGTCCAACTAAATATGCTAGATCA 59.076 38.462 0.00 0.00 0.00 2.92
2 3 6.223852 CCGTGTCCAACTAAATATGCTAGAT 58.776 40.000 0.00 0.00 0.00 1.98
7 8 2.680841 TGCCGTGTCCAACTAAATATGC 59.319 45.455 0.00 0.00 0.00 3.14
9 10 5.189928 TCATTGCCGTGTCCAACTAAATAT 58.810 37.500 0.00 0.00 0.00 1.28
13 14 2.552599 TCATTGCCGTGTCCAACTAA 57.447 45.000 0.00 0.00 0.00 2.24
17 18 1.539388 GAACATCATTGCCGTGTCCAA 59.461 47.619 0.00 0.00 0.00 3.53
22 23 1.135344 TGCATGAACATCATTGCCGTG 60.135 47.619 0.00 0.00 34.28 4.94
23 24 1.135315 GTGCATGAACATCATTGCCGT 60.135 47.619 0.00 0.00 34.28 5.68
24 25 1.133598 AGTGCATGAACATCATTGCCG 59.866 47.619 6.60 0.00 34.28 5.69
25 26 2.953466 AGTGCATGAACATCATTGCC 57.047 45.000 6.60 4.88 34.28 4.52
28 29 7.414222 AAGGAAATAGTGCATGAACATCATT 57.586 32.000 6.60 0.00 34.28 2.57
53 54 0.523072 CCAACATTGACGCCTTGAGG 59.477 55.000 0.00 0.00 38.53 3.86
56 57 0.893270 TCCCCAACATTGACGCCTTG 60.893 55.000 0.00 0.00 0.00 3.61
79 80 3.004419 TGACAACACCTAGACAACGAGAG 59.996 47.826 0.00 0.00 0.00 3.20
90 91 4.724399 ACCAACATCATTGACAACACCTA 58.276 39.130 0.00 0.00 0.00 3.08
92 93 5.446143 TTACCAACATCATTGACAACACC 57.554 39.130 0.00 0.00 0.00 4.16
99 100 9.223099 CATATCAGCTATTACCAACATCATTGA 57.777 33.333 0.00 0.00 0.00 2.57
114 115 4.991056 CCGTTGTAGCAACATATCAGCTAT 59.009 41.667 11.76 0.00 42.21 2.97
118 119 3.531538 ACCCGTTGTAGCAACATATCAG 58.468 45.455 11.76 0.00 34.97 2.90
124 125 2.303600 AGGATAACCCGTTGTAGCAACA 59.696 45.455 11.76 0.00 40.87 3.33
125 126 2.981898 AGGATAACCCGTTGTAGCAAC 58.018 47.619 2.22 2.22 40.87 4.17
126 127 3.262405 AGAAGGATAACCCGTTGTAGCAA 59.738 43.478 0.00 0.00 40.87 3.91
131 132 2.027469 GGTGAGAAGGATAACCCGTTGT 60.027 50.000 0.00 0.00 40.87 3.32
132 133 2.629051 GGTGAGAAGGATAACCCGTTG 58.371 52.381 0.00 0.00 40.87 4.10
133 134 1.558294 GGGTGAGAAGGATAACCCGTT 59.442 52.381 0.00 0.00 42.79 4.44
134 135 1.201424 GGGTGAGAAGGATAACCCGT 58.799 55.000 0.00 0.00 42.79 5.28
140 141 2.317040 GGATCACGGGTGAGAAGGATA 58.683 52.381 7.64 0.00 43.61 2.59
141 142 1.123928 GGATCACGGGTGAGAAGGAT 58.876 55.000 7.64 0.00 43.61 3.24
143 144 0.978146 AGGGATCACGGGTGAGAAGG 60.978 60.000 7.64 0.00 43.61 3.46
145 146 2.108168 CTTAGGGATCACGGGTGAGAA 58.892 52.381 7.64 0.00 43.61 2.87
183 184 0.179020 TGCACACAACCAGGGAAGAG 60.179 55.000 0.00 0.00 0.00 2.85
190 191 6.593770 TGTACTATTAAGATGCACACAACCAG 59.406 38.462 0.00 0.00 0.00 4.00
213 214 3.451178 ACAAGTACACACCTGACTTCTGT 59.549 43.478 0.00 0.00 31.04 3.41
214 215 4.060038 ACAAGTACACACCTGACTTCTG 57.940 45.455 0.00 0.00 31.04 3.02
215 216 4.081087 ACAACAAGTACACACCTGACTTCT 60.081 41.667 0.00 0.00 31.04 2.85
226 227 7.176285 TCGGTACAAAATACAACAAGTACAC 57.824 36.000 0.00 0.00 35.05 2.90
234 235 8.428186 TCCATTAGATCGGTACAAAATACAAC 57.572 34.615 0.00 0.00 0.00 3.32
274 277 0.261696 GGAGGGGTGGTGGCATTATT 59.738 55.000 0.00 0.00 0.00 1.40
276 279 2.313427 GGGAGGGGTGGTGGCATTA 61.313 63.158 0.00 0.00 0.00 1.90
286 289 1.163309 TGATGGTCAAGGGAGGGGT 59.837 57.895 0.00 0.00 0.00 4.95
301 304 2.288457 CGAGAACATGGCGATAGGTGAT 60.288 50.000 0.00 0.00 0.00 3.06
303 306 1.491670 CGAGAACATGGCGATAGGTG 58.508 55.000 0.00 0.00 0.00 4.00
310 313 3.499737 GGTGGCGAGAACATGGCG 61.500 66.667 0.00 0.00 32.50 5.69
339 347 3.727948 ACGGGAGGTAGGGAGATTTAAA 58.272 45.455 0.00 0.00 0.00 1.52
342 350 2.117051 GAACGGGAGGTAGGGAGATTT 58.883 52.381 0.00 0.00 0.00 2.17
346 354 1.112950 GAAGAACGGGAGGTAGGGAG 58.887 60.000 0.00 0.00 0.00 4.30
347 355 0.708802 AGAAGAACGGGAGGTAGGGA 59.291 55.000 0.00 0.00 0.00 4.20
351 359 2.947652 CGATGTAGAAGAACGGGAGGTA 59.052 50.000 0.00 0.00 0.00 3.08
358 366 0.924090 GCTGGCGATGTAGAAGAACG 59.076 55.000 0.00 0.00 0.00 3.95
390 398 2.529136 TGTGGACAGGTGGAGGGG 60.529 66.667 0.00 0.00 0.00 4.79
391 399 2.146724 TGTGTGGACAGGTGGAGGG 61.147 63.158 0.00 0.00 0.00 4.30
400 408 1.076632 GGTTTGGGGTGTGTGGACA 60.077 57.895 0.00 0.00 0.00 4.02
407 415 0.634465 AAGTTGAGGGTTTGGGGTGT 59.366 50.000 0.00 0.00 0.00 4.16
410 418 3.089284 GTCATAAGTTGAGGGTTTGGGG 58.911 50.000 0.00 0.00 34.17 4.96
414 422 3.916989 AGGGAGTCATAAGTTGAGGGTTT 59.083 43.478 0.00 0.00 34.17 3.27
427 435 1.903877 CGCAGGTGGAAGGGAGTCAT 61.904 60.000 0.00 0.00 0.00 3.06
456 464 1.815421 GAAGCCGGCGATGACATGT 60.815 57.895 23.20 0.00 0.00 3.21
493 502 2.435234 GGCATTACCGTGGCGTGA 60.435 61.111 0.00 0.00 34.85 4.35
495 504 1.817941 GATGGCATTACCGTGGCGT 60.818 57.895 0.00 0.00 46.68 5.68
503 512 3.205784 AGAGGCTGAAGATGGCATTAC 57.794 47.619 0.00 0.00 0.00 1.89
505 514 2.106166 CCTAGAGGCTGAAGATGGCATT 59.894 50.000 0.00 0.00 0.00 3.56
506 515 1.698532 CCTAGAGGCTGAAGATGGCAT 59.301 52.381 0.00 0.00 0.00 4.40
528 537 2.841044 GATCGGGGGTAGGGCGAA 60.841 66.667 0.00 0.00 0.00 4.70
534 543 2.203252 TCGGTCGATCGGGGGTAG 60.203 66.667 19.53 1.69 0.00 3.18
604 613 4.935808 CCGCCATGGTAAGAATAAGGATAC 59.064 45.833 14.67 0.00 0.00 2.24
624 633 1.615107 CTCGAAACCGACTTCACCGC 61.615 60.000 0.00 0.00 32.06 5.68
690 699 3.057315 CCTGGTAACTTGTCATGGCTTTG 60.057 47.826 0.00 0.00 37.61 2.77
816 828 8.561738 TTGGCCTCTTACTTTATCTTTTACAG 57.438 34.615 3.32 0.00 0.00 2.74
819 831 8.927675 TGTTTGGCCTCTTACTTTATCTTTTA 57.072 30.769 3.32 0.00 0.00 1.52
820 832 7.833285 TGTTTGGCCTCTTACTTTATCTTTT 57.167 32.000 3.32 0.00 0.00 2.27
867 880 4.865761 CGCTGCCATGCATGCACC 62.866 66.667 25.37 14.86 38.13 5.01
888 913 6.418226 CGCGTATATATAGGCCAAGAATTCTC 59.582 42.308 24.52 0.00 40.09 2.87
913 1053 0.989890 GTGTACATGGAAGCGTCGAC 59.010 55.000 5.18 5.18 0.00 4.20
956 1102 8.438676 AACGTGATAAATTAAGGATGGAGAAG 57.561 34.615 0.00 0.00 0.00 2.85
960 1119 7.980662 TCGTAAACGTGATAAATTAAGGATGGA 59.019 33.333 2.02 0.00 40.80 3.41
982 1141 1.134818 CATGGTTGCCTAGTGCTCGTA 60.135 52.381 5.06 0.00 42.00 3.43
987 1146 0.322456 TGGACATGGTTGCCTAGTGC 60.322 55.000 0.00 0.00 41.77 4.40
993 1152 1.205417 CTTGGAATGGACATGGTTGCC 59.795 52.381 0.00 0.00 0.00 4.52
1010 1187 2.761208 ACGAGGAAGGTGGATAGTCTTG 59.239 50.000 0.00 0.00 0.00 3.02
1024 1201 0.524862 GGTAAGAGCACGACGAGGAA 59.475 55.000 0.00 0.00 0.00 3.36
1031 1208 3.311106 CAAAACGTAGGTAAGAGCACGA 58.689 45.455 0.00 0.00 37.80 4.35
1219 1408 0.603065 GATCGGCCTTTGCTTTTGGT 59.397 50.000 0.00 0.00 37.74 3.67
1221 1410 0.240945 ACGATCGGCCTTTGCTTTTG 59.759 50.000 20.98 0.00 37.74 2.44
1224 1413 1.635663 CGAACGATCGGCCTTTGCTT 61.636 55.000 20.98 1.10 45.32 3.91
1410 1599 3.834799 GAGTCCGTCGGGGCGAAT 61.835 66.667 12.29 0.00 44.97 3.34
1596 1785 4.112341 GTGTAGGACGACGCGGCT 62.112 66.667 11.76 0.00 34.07 5.52
1701 1890 0.879765 CGTAGGTGTCCTTCGTCTGT 59.120 55.000 6.65 0.00 39.10 3.41
1724 1913 1.619977 GGAGGCAGTAGGAGAAGACCA 60.620 57.143 0.00 0.00 0.00 4.02
1830 2019 4.728110 GGGCGGTGGGGGTTGTAC 62.728 72.222 0.00 0.00 0.00 2.90
2157 3979 1.757118 TGGATCATCACGTTCTCCTCC 59.243 52.381 0.00 0.00 0.00 4.30
2193 4015 4.002506 ATCGCCAGGCACGTGACA 62.003 61.111 26.11 1.54 0.00 3.58
2208 4030 2.280186 GATGACCCCGACGCCATC 60.280 66.667 0.00 0.00 0.00 3.51
2215 4037 4.853142 CCCCTCCGATGACCCCGA 62.853 72.222 0.00 0.00 0.00 5.14
2220 4042 1.221021 GTTCACCCCCTCCGATGAC 59.779 63.158 0.00 0.00 0.00 3.06
2221 4043 2.355986 CGTTCACCCCCTCCGATGA 61.356 63.158 0.00 0.00 0.00 2.92
2223 4045 3.782443 GCGTTCACCCCCTCCGAT 61.782 66.667 0.00 0.00 0.00 4.18
2241 4063 3.818787 GCCAGCACATTGAGCCCG 61.819 66.667 2.26 0.00 0.00 6.13
2283 4105 2.428569 GCGACGTCGAAGAGCACA 60.429 61.111 39.74 0.00 43.02 4.57
2331 4153 2.557056 GCATATTGATCAGGCAGTGCAT 59.443 45.455 18.61 7.05 0.00 3.96
2337 4159 1.844771 GCGCGCATATTGATCAGGCA 61.845 55.000 29.10 0.00 0.00 4.75
2351 4173 4.539081 GTTACTCTTCGCGCGCGC 62.539 66.667 45.41 42.65 39.59 6.86
2368 4190 3.547613 CGACCGAGATTTTCCCGTACTAG 60.548 52.174 0.00 0.00 0.00 2.57
2374 4196 1.202371 TGATCGACCGAGATTTTCCCG 60.202 52.381 0.00 0.00 0.00 5.14
2378 4200 5.941948 AAGTTTTGATCGACCGAGATTTT 57.058 34.783 0.00 0.00 0.00 1.82
2380 4202 5.350640 GGTTAAGTTTTGATCGACCGAGATT 59.649 40.000 0.00 0.00 0.00 2.40
2382 4204 4.240096 GGTTAAGTTTTGATCGACCGAGA 58.760 43.478 0.00 0.00 0.00 4.04
2383 4205 3.991773 TGGTTAAGTTTTGATCGACCGAG 59.008 43.478 0.00 0.00 0.00 4.63
2385 4207 4.735662 TTGGTTAAGTTTTGATCGACCG 57.264 40.909 0.00 0.00 0.00 4.79
2386 4208 6.909909 AGATTTGGTTAAGTTTTGATCGACC 58.090 36.000 0.00 0.00 0.00 4.79
2387 4209 7.581476 TGAGATTTGGTTAAGTTTTGATCGAC 58.419 34.615 0.00 0.00 0.00 4.20
2389 4211 7.584987 ACTGAGATTTGGTTAAGTTTTGATCG 58.415 34.615 0.00 0.00 0.00 3.69
2390 4212 8.787852 AGACTGAGATTTGGTTAAGTTTTGATC 58.212 33.333 0.00 0.00 0.00 2.92
2391 4213 8.571336 CAGACTGAGATTTGGTTAAGTTTTGAT 58.429 33.333 0.00 0.00 0.00 2.57
2392 4214 7.556275 ACAGACTGAGATTTGGTTAAGTTTTGA 59.444 33.333 10.08 0.00 0.00 2.69
2393 4215 7.707104 ACAGACTGAGATTTGGTTAAGTTTTG 58.293 34.615 10.08 0.00 0.00 2.44
2394 4216 7.881775 ACAGACTGAGATTTGGTTAAGTTTT 57.118 32.000 10.08 0.00 0.00 2.43
2395 4217 7.881775 AACAGACTGAGATTTGGTTAAGTTT 57.118 32.000 10.08 0.00 0.00 2.66
2396 4218 8.974060 TTAACAGACTGAGATTTGGTTAAGTT 57.026 30.769 10.08 0.00 0.00 2.66
2398 4220 8.713271 GTCTTAACAGACTGAGATTTGGTTAAG 58.287 37.037 10.08 9.92 45.54 1.85
2424 4246 2.933495 TTCACGGATCTCCACGTAAG 57.067 50.000 0.00 0.00 42.04 2.34
2425 4247 3.880047 ATTTCACGGATCTCCACGTAA 57.120 42.857 0.00 0.00 42.04 3.18
2426 4248 3.880047 AATTTCACGGATCTCCACGTA 57.120 42.857 0.00 0.00 42.04 3.57
2427 4249 2.762535 AATTTCACGGATCTCCACGT 57.237 45.000 0.00 0.00 45.25 4.49
2428 4250 4.154195 AGAAAAATTTCACGGATCTCCACG 59.846 41.667 8.47 0.00 39.61 4.94
2429 4251 5.629079 AGAAAAATTTCACGGATCTCCAC 57.371 39.130 8.47 0.00 39.61 4.02
2430 4252 6.648879 AAAGAAAAATTTCACGGATCTCCA 57.351 33.333 8.47 0.00 39.61 3.86
2431 4253 7.651704 TCAAAAAGAAAAATTTCACGGATCTCC 59.348 33.333 8.47 0.00 39.61 3.71
2432 4254 8.480066 GTCAAAAAGAAAAATTTCACGGATCTC 58.520 33.333 8.47 0.00 39.61 2.75
2433 4255 8.197439 AGTCAAAAAGAAAAATTTCACGGATCT 58.803 29.630 8.47 0.00 39.61 2.75
2434 4256 8.352752 AGTCAAAAAGAAAAATTTCACGGATC 57.647 30.769 8.47 0.00 39.61 3.36
2435 4257 8.716646 AAGTCAAAAAGAAAAATTTCACGGAT 57.283 26.923 8.47 0.00 39.61 4.18
2436 4258 8.541133 AAAGTCAAAAAGAAAAATTTCACGGA 57.459 26.923 8.47 0.00 39.61 4.69
2437 4259 8.655970 AGAAAGTCAAAAAGAAAAATTTCACGG 58.344 29.630 8.47 0.00 39.61 4.94
2453 4275 9.543783 GGAGTACTAAAGAAGAAGAAAGTCAAA 57.456 33.333 0.00 0.00 0.00 2.69
2454 4276 8.148999 GGGAGTACTAAAGAAGAAGAAAGTCAA 58.851 37.037 0.00 0.00 0.00 3.18
2455 4277 7.509659 AGGGAGTACTAAAGAAGAAGAAAGTCA 59.490 37.037 0.00 0.00 0.00 3.41
2456 4278 7.898918 AGGGAGTACTAAAGAAGAAGAAAGTC 58.101 38.462 0.00 0.00 0.00 3.01
2457 4279 7.731235 AGAGGGAGTACTAAAGAAGAAGAAAGT 59.269 37.037 0.00 0.00 0.00 2.66
2458 4280 8.032451 CAGAGGGAGTACTAAAGAAGAAGAAAG 58.968 40.741 0.00 0.00 0.00 2.62
2459 4281 7.509659 ACAGAGGGAGTACTAAAGAAGAAGAAA 59.490 37.037 0.00 0.00 0.00 2.52
2460 4282 7.011382 ACAGAGGGAGTACTAAAGAAGAAGAA 58.989 38.462 0.00 0.00 0.00 2.52
2461 4283 6.553857 ACAGAGGGAGTACTAAAGAAGAAGA 58.446 40.000 0.00 0.00 0.00 2.87
2462 4284 6.127563 GGACAGAGGGAGTACTAAAGAAGAAG 60.128 46.154 0.00 0.00 0.00 2.85
2463 4285 5.715753 GGACAGAGGGAGTACTAAAGAAGAA 59.284 44.000 0.00 0.00 0.00 2.52
2464 4286 5.262804 GGACAGAGGGAGTACTAAAGAAGA 58.737 45.833 0.00 0.00 0.00 2.87
2465 4287 4.403113 GGGACAGAGGGAGTACTAAAGAAG 59.597 50.000 0.00 0.00 0.00 2.85
2466 4288 4.202749 TGGGACAGAGGGAGTACTAAAGAA 60.203 45.833 0.00 0.00 0.00 2.52
2467 4289 3.335786 TGGGACAGAGGGAGTACTAAAGA 59.664 47.826 0.00 0.00 0.00 2.52
2468 4290 3.709587 TGGGACAGAGGGAGTACTAAAG 58.290 50.000 0.00 0.00 0.00 1.85
2469 4291 3.839323 TGGGACAGAGGGAGTACTAAA 57.161 47.619 0.00 0.00 0.00 1.85
2484 4306 7.279313 TGCTAAAACGTTCTTCTATTATGGGAC 59.721 37.037 0.00 0.00 0.00 4.46
2485 4307 7.332557 TGCTAAAACGTTCTTCTATTATGGGA 58.667 34.615 0.00 0.00 0.00 4.37
2486 4308 7.280205 ACTGCTAAAACGTTCTTCTATTATGGG 59.720 37.037 0.00 0.00 0.00 4.00
2487 4309 8.197988 ACTGCTAAAACGTTCTTCTATTATGG 57.802 34.615 0.00 0.00 0.00 2.74
2490 4312 9.350357 CACTACTGCTAAAACGTTCTTCTATTA 57.650 33.333 0.00 0.00 0.00 0.98
2491 4313 7.871463 ACACTACTGCTAAAACGTTCTTCTATT 59.129 33.333 0.00 0.00 0.00 1.73
2492 4314 7.376615 ACACTACTGCTAAAACGTTCTTCTAT 58.623 34.615 0.00 0.00 0.00 1.98
2493 4315 6.742109 ACACTACTGCTAAAACGTTCTTCTA 58.258 36.000 0.00 0.00 0.00 2.10
2494 4316 5.598769 ACACTACTGCTAAAACGTTCTTCT 58.401 37.500 0.00 0.00 0.00 2.85
2495 4317 5.902051 ACACTACTGCTAAAACGTTCTTC 57.098 39.130 0.00 0.00 0.00 2.87
2496 4318 6.420008 CACTACACTACTGCTAAAACGTTCTT 59.580 38.462 0.00 1.04 0.00 2.52
2497 4319 5.919141 CACTACACTACTGCTAAAACGTTCT 59.081 40.000 0.00 0.00 0.00 3.01
2498 4320 5.388164 GCACTACACTACTGCTAAAACGTTC 60.388 44.000 0.00 0.00 0.00 3.95
2499 4321 4.446719 GCACTACACTACTGCTAAAACGTT 59.553 41.667 0.00 0.00 0.00 3.99
2500 4322 3.985925 GCACTACACTACTGCTAAAACGT 59.014 43.478 0.00 0.00 0.00 3.99
2501 4323 4.235360 AGCACTACACTACTGCTAAAACG 58.765 43.478 0.00 0.00 39.52 3.60
2505 4327 5.860182 CGTTTTAGCACTACACTACTGCTAA 59.140 40.000 7.14 7.14 46.72 3.09
2506 4328 5.048504 ACGTTTTAGCACTACACTACTGCTA 60.049 40.000 0.00 0.00 41.52 3.49
2507 4329 4.235360 CGTTTTAGCACTACACTACTGCT 58.765 43.478 0.00 0.00 43.67 4.24
2508 4330 3.985925 ACGTTTTAGCACTACACTACTGC 59.014 43.478 0.00 0.00 0.00 4.40
2509 4331 5.919141 AGAACGTTTTAGCACTACACTACTG 59.081 40.000 0.46 0.00 0.00 2.74
2510 4332 6.081872 AGAACGTTTTAGCACTACACTACT 57.918 37.500 0.46 0.00 0.00 2.57
2511 4333 6.760161 AAGAACGTTTTAGCACTACACTAC 57.240 37.500 0.46 0.00 0.00 2.73
2513 4335 9.649167 AATATAAGAACGTTTTAGCACTACACT 57.351 29.630 0.46 0.00 0.00 3.55
2518 4340 9.052759 CCCATAATATAAGAACGTTTTAGCACT 57.947 33.333 0.46 0.00 0.00 4.40
2519 4341 9.048446 TCCCATAATATAAGAACGTTTTAGCAC 57.952 33.333 0.46 0.00 0.00 4.40
2520 4342 9.048446 GTCCCATAATATAAGAACGTTTTAGCA 57.952 33.333 0.46 0.00 0.00 3.49
2521 4343 8.219105 CGTCCCATAATATAAGAACGTTTTAGC 58.781 37.037 0.46 0.00 0.00 3.09
2522 4344 8.706035 CCGTCCCATAATATAAGAACGTTTTAG 58.294 37.037 0.46 0.00 0.00 1.85
2523 4345 8.420222 TCCGTCCCATAATATAAGAACGTTTTA 58.580 33.333 0.46 3.93 0.00 1.52
2524 4346 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
2525 4347 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
2526 4348 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
2527 4349 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
2528 4350 5.184479 TCCTCCGTCCCATAATATAAGAACG 59.816 44.000 0.00 0.00 0.00 3.95
2529 4351 6.600882 TCCTCCGTCCCATAATATAAGAAC 57.399 41.667 0.00 0.00 0.00 3.01
2530 4352 6.785963 ACTTCCTCCGTCCCATAATATAAGAA 59.214 38.462 0.00 0.00 0.00 2.52
2531 4353 6.320518 ACTTCCTCCGTCCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
2532 4354 6.607004 ACTTCCTCCGTCCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
2533 4355 7.011994 TGTACTTCCTCCGTCCCATAATATAA 58.988 38.462 0.00 0.00 0.00 0.98
2534 4356 6.554784 TGTACTTCCTCCGTCCCATAATATA 58.445 40.000 0.00 0.00 0.00 0.86
2535 4357 5.399991 TGTACTTCCTCCGTCCCATAATAT 58.600 41.667 0.00 0.00 0.00 1.28
2536 4358 4.806892 TGTACTTCCTCCGTCCCATAATA 58.193 43.478 0.00 0.00 0.00 0.98
2537 4359 3.649843 TGTACTTCCTCCGTCCCATAAT 58.350 45.455 0.00 0.00 0.00 1.28
2538 4360 3.104519 TGTACTTCCTCCGTCCCATAA 57.895 47.619 0.00 0.00 0.00 1.90
2539 4361 2.832643 TGTACTTCCTCCGTCCCATA 57.167 50.000 0.00 0.00 0.00 2.74
2540 4362 1.762957 CATGTACTTCCTCCGTCCCAT 59.237 52.381 0.00 0.00 0.00 4.00
2541 4363 1.191535 CATGTACTTCCTCCGTCCCA 58.808 55.000 0.00 0.00 0.00 4.37
2542 4364 0.179081 GCATGTACTTCCTCCGTCCC 60.179 60.000 0.00 0.00 0.00 4.46
2543 4365 0.824759 AGCATGTACTTCCTCCGTCC 59.175 55.000 0.00 0.00 0.00 4.79
2544 4366 3.643763 CATAGCATGTACTTCCTCCGTC 58.356 50.000 0.00 0.00 0.00 4.79
2545 4367 2.224066 GCATAGCATGTACTTCCTCCGT 60.224 50.000 0.00 0.00 0.00 4.69
2546 4368 2.408050 GCATAGCATGTACTTCCTCCG 58.592 52.381 0.00 0.00 0.00 4.63
2547 4369 2.104792 TGGCATAGCATGTACTTCCTCC 59.895 50.000 0.00 0.00 0.00 4.30
2548 4370 3.134458 GTGGCATAGCATGTACTTCCTC 58.866 50.000 0.00 0.00 0.00 3.71
2549 4371 2.774234 AGTGGCATAGCATGTACTTCCT 59.226 45.455 0.00 0.00 0.00 3.36
2550 4372 3.199880 AGTGGCATAGCATGTACTTCC 57.800 47.619 0.00 0.00 0.00 3.46
2551 4373 4.034510 GTCAAGTGGCATAGCATGTACTTC 59.965 45.833 0.00 5.56 37.55 3.01
2552 4374 3.941483 GTCAAGTGGCATAGCATGTACTT 59.059 43.478 0.00 11.30 39.00 2.24
2553 4375 3.535561 GTCAAGTGGCATAGCATGTACT 58.464 45.455 0.00 0.00 33.43 2.73
2554 4376 2.285220 CGTCAAGTGGCATAGCATGTAC 59.715 50.000 0.00 0.00 0.00 2.90
2555 4377 2.167487 TCGTCAAGTGGCATAGCATGTA 59.833 45.455 0.00 0.00 0.00 2.29
2556 4378 1.066215 TCGTCAAGTGGCATAGCATGT 60.066 47.619 0.00 0.00 0.00 3.21
2557 4379 1.655484 TCGTCAAGTGGCATAGCATG 58.345 50.000 0.00 0.00 0.00 4.06
2558 4380 2.093500 TCTTCGTCAAGTGGCATAGCAT 60.093 45.455 0.00 0.00 0.00 3.79
2559 4381 1.275010 TCTTCGTCAAGTGGCATAGCA 59.725 47.619 0.00 0.00 0.00 3.49
2560 4382 1.661112 GTCTTCGTCAAGTGGCATAGC 59.339 52.381 0.00 0.00 0.00 2.97
2561 4383 3.238108 AGTCTTCGTCAAGTGGCATAG 57.762 47.619 0.00 0.00 0.00 2.23
2562 4384 3.325870 CAAGTCTTCGTCAAGTGGCATA 58.674 45.455 0.00 0.00 0.00 3.14
2563 4385 2.146342 CAAGTCTTCGTCAAGTGGCAT 58.854 47.619 0.00 0.00 0.00 4.40
2564 4386 1.581934 CAAGTCTTCGTCAAGTGGCA 58.418 50.000 0.00 0.00 0.00 4.92
2565 4387 0.868406 CCAAGTCTTCGTCAAGTGGC 59.132 55.000 0.00 0.00 0.00 5.01
2566 4388 2.240493 ACCAAGTCTTCGTCAAGTGG 57.760 50.000 0.00 0.00 32.05 4.00
2567 4389 5.728351 TTTAACCAAGTCTTCGTCAAGTG 57.272 39.130 0.00 0.00 0.00 3.16
2568 4390 6.937436 AATTTAACCAAGTCTTCGTCAAGT 57.063 33.333 0.00 0.00 0.00 3.16
2569 4391 7.414436 TCAAATTTAACCAAGTCTTCGTCAAG 58.586 34.615 0.00 0.00 0.00 3.02
2570 4392 7.323049 TCAAATTTAACCAAGTCTTCGTCAA 57.677 32.000 0.00 0.00 0.00 3.18
2571 4393 6.928979 TCAAATTTAACCAAGTCTTCGTCA 57.071 33.333 0.00 0.00 0.00 4.35
2572 4394 7.268447 CGATTCAAATTTAACCAAGTCTTCGTC 59.732 37.037 0.00 0.00 0.00 4.20
2573 4395 7.041644 TCGATTCAAATTTAACCAAGTCTTCGT 60.042 33.333 0.00 0.00 0.00 3.85
2574 4396 7.268447 GTCGATTCAAATTTAACCAAGTCTTCG 59.732 37.037 0.00 0.00 0.00 3.79
2575 4397 8.290325 AGTCGATTCAAATTTAACCAAGTCTTC 58.710 33.333 0.00 0.00 0.00 2.87
2576 4398 8.166422 AGTCGATTCAAATTTAACCAAGTCTT 57.834 30.769 0.00 0.00 0.00 3.01
2577 4399 7.745620 AGTCGATTCAAATTTAACCAAGTCT 57.254 32.000 0.00 0.00 0.00 3.24
2578 4400 9.543018 CTTAGTCGATTCAAATTTAACCAAGTC 57.457 33.333 0.00 0.00 0.00 3.01
2579 4401 9.280174 TCTTAGTCGATTCAAATTTAACCAAGT 57.720 29.630 0.00 0.00 0.00 3.16
2580 4402 9.543018 GTCTTAGTCGATTCAAATTTAACCAAG 57.457 33.333 0.00 0.00 0.00 3.61
2581 4403 8.508875 GGTCTTAGTCGATTCAAATTTAACCAA 58.491 33.333 0.00 0.00 0.00 3.67
2582 4404 7.881232 AGGTCTTAGTCGATTCAAATTTAACCA 59.119 33.333 0.00 0.00 0.00 3.67
2583 4405 8.265165 AGGTCTTAGTCGATTCAAATTTAACC 57.735 34.615 0.00 0.00 0.00 2.85
2588 4410 9.804758 CTAGTTAGGTCTTAGTCGATTCAAATT 57.195 33.333 0.00 0.00 0.00 1.82
2589 4411 8.968969 ACTAGTTAGGTCTTAGTCGATTCAAAT 58.031 33.333 0.00 0.00 0.00 2.32
2590 4412 8.345724 ACTAGTTAGGTCTTAGTCGATTCAAA 57.654 34.615 0.00 0.00 0.00 2.69
2591 4413 7.934855 ACTAGTTAGGTCTTAGTCGATTCAA 57.065 36.000 0.00 0.00 0.00 2.69
2592 4414 9.053840 CATACTAGTTAGGTCTTAGTCGATTCA 57.946 37.037 0.00 0.00 0.00 2.57
2593 4415 9.054922 ACATACTAGTTAGGTCTTAGTCGATTC 57.945 37.037 0.00 0.00 0.00 2.52
2594 4416 8.977267 ACATACTAGTTAGGTCTTAGTCGATT 57.023 34.615 0.00 0.00 0.00 3.34
2595 4417 9.487790 GTACATACTAGTTAGGTCTTAGTCGAT 57.512 37.037 0.00 0.00 0.00 3.59
2596 4418 8.700051 AGTACATACTAGTTAGGTCTTAGTCGA 58.300 37.037 0.00 0.00 34.13 4.20
2597 4419 8.885494 AGTACATACTAGTTAGGTCTTAGTCG 57.115 38.462 0.00 0.00 34.13 4.18
2598 4420 9.271828 GGAGTACATACTAGTTAGGTCTTAGTC 57.728 40.741 0.00 0.00 36.50 2.59
2599 4421 8.217111 GGGAGTACATACTAGTTAGGTCTTAGT 58.783 40.741 0.00 0.00 36.50 2.24
2600 4422 8.216423 TGGGAGTACATACTAGTTAGGTCTTAG 58.784 40.741 0.00 0.00 36.50 2.18
2601 4423 8.106017 TGGGAGTACATACTAGTTAGGTCTTA 57.894 38.462 0.00 0.00 36.50 2.10
2602 4424 6.978261 TGGGAGTACATACTAGTTAGGTCTT 58.022 40.000 0.00 0.00 36.50 3.01
2603 4425 6.587560 TGGGAGTACATACTAGTTAGGTCT 57.412 41.667 0.00 0.00 36.50 3.85
2604 4426 7.504911 TGAATGGGAGTACATACTAGTTAGGTC 59.495 40.741 0.00 0.00 36.50 3.85
2605 4427 7.359849 TGAATGGGAGTACATACTAGTTAGGT 58.640 38.462 0.00 0.00 36.50 3.08
2606 4428 7.834881 TGAATGGGAGTACATACTAGTTAGG 57.165 40.000 0.00 0.00 36.50 2.69
2607 4429 8.861086 ACATGAATGGGAGTACATACTAGTTAG 58.139 37.037 0.00 0.00 36.50 2.34
2608 4430 8.777578 ACATGAATGGGAGTACATACTAGTTA 57.222 34.615 0.00 0.00 36.50 2.24
2609 4431 7.344612 TGACATGAATGGGAGTACATACTAGTT 59.655 37.037 0.00 0.00 36.50 2.24
2610 4432 6.839134 TGACATGAATGGGAGTACATACTAGT 59.161 38.462 0.00 0.00 36.50 2.57
2611 4433 7.290110 TGACATGAATGGGAGTACATACTAG 57.710 40.000 0.00 0.00 36.50 2.57
2612 4434 7.309194 CGATGACATGAATGGGAGTACATACTA 60.309 40.741 0.00 0.00 36.50 1.82
2613 4435 6.517362 CGATGACATGAATGGGAGTACATACT 60.517 42.308 0.00 0.00 39.71 2.12
2614 4436 5.635280 CGATGACATGAATGGGAGTACATAC 59.365 44.000 0.00 0.00 0.00 2.39
2615 4437 5.304357 ACGATGACATGAATGGGAGTACATA 59.696 40.000 0.00 0.00 0.00 2.29
2616 4438 4.101585 ACGATGACATGAATGGGAGTACAT 59.898 41.667 0.00 0.00 0.00 2.29
2617 4439 3.450817 ACGATGACATGAATGGGAGTACA 59.549 43.478 0.00 0.00 0.00 2.90
2618 4440 3.804325 CACGATGACATGAATGGGAGTAC 59.196 47.826 0.00 0.00 0.00 2.73
2619 4441 3.450817 ACACGATGACATGAATGGGAGTA 59.549 43.478 0.00 0.00 0.00 2.59
2620 4442 2.237143 ACACGATGACATGAATGGGAGT 59.763 45.455 0.00 0.00 0.00 3.85
2621 4443 2.910199 ACACGATGACATGAATGGGAG 58.090 47.619 0.00 0.00 0.00 4.30
2622 4444 4.687901 ATACACGATGACATGAATGGGA 57.312 40.909 0.00 0.00 0.00 4.37
2623 4445 6.621380 GCATAATACACGATGACATGAATGGG 60.621 42.308 0.00 0.00 0.00 4.00
2624 4446 6.148315 AGCATAATACACGATGACATGAATGG 59.852 38.462 0.00 0.00 0.00 3.16
2625 4447 7.125536 AGCATAATACACGATGACATGAATG 57.874 36.000 0.00 0.00 0.00 2.67
2626 4448 8.090831 AGTAGCATAATACACGATGACATGAAT 58.909 33.333 0.00 0.00 0.00 2.57
2627 4449 7.433680 AGTAGCATAATACACGATGACATGAA 58.566 34.615 0.00 0.00 0.00 2.57
2628 4450 6.981722 AGTAGCATAATACACGATGACATGA 58.018 36.000 0.00 0.00 0.00 3.07
2629 4451 7.359514 CCAAGTAGCATAATACACGATGACATG 60.360 40.741 0.00 0.00 0.00 3.21
2630 4452 6.646653 CCAAGTAGCATAATACACGATGACAT 59.353 38.462 0.00 0.00 0.00 3.06
2631 4453 5.983118 CCAAGTAGCATAATACACGATGACA 59.017 40.000 0.00 0.00 0.00 3.58
2632 4454 5.107453 GCCAAGTAGCATAATACACGATGAC 60.107 44.000 0.00 0.00 0.00 3.06
2633 4455 4.988540 GCCAAGTAGCATAATACACGATGA 59.011 41.667 0.00 0.00 0.00 2.92
2634 4456 4.749598 TGCCAAGTAGCATAATACACGATG 59.250 41.667 0.00 0.00 38.00 3.84
2635 4457 4.956085 TGCCAAGTAGCATAATACACGAT 58.044 39.130 0.00 0.00 38.00 3.73
2636 4458 4.142026 ACTGCCAAGTAGCATAATACACGA 60.142 41.667 0.00 0.00 43.09 4.35
2637 4459 4.025730 CACTGCCAAGTAGCATAATACACG 60.026 45.833 0.00 0.00 43.09 4.49
2638 4460 4.273480 CCACTGCCAAGTAGCATAATACAC 59.727 45.833 0.00 0.00 43.09 2.90
2639 4461 4.450976 CCACTGCCAAGTAGCATAATACA 58.549 43.478 0.00 0.00 43.09 2.29
2640 4462 3.815401 CCCACTGCCAAGTAGCATAATAC 59.185 47.826 0.00 0.00 43.09 1.89
2641 4463 3.747388 GCCCACTGCCAAGTAGCATAATA 60.747 47.826 0.00 0.00 43.09 0.98
2642 4464 2.936202 CCCACTGCCAAGTAGCATAAT 58.064 47.619 0.00 0.00 43.09 1.28
2643 4465 1.681780 GCCCACTGCCAAGTAGCATAA 60.682 52.381 0.00 0.00 43.09 1.90
2644 4466 0.107214 GCCCACTGCCAAGTAGCATA 60.107 55.000 0.00 0.00 43.09 3.14
2645 4467 1.379044 GCCCACTGCCAAGTAGCAT 60.379 57.895 0.00 0.00 43.09 3.79
2646 4468 2.034066 GCCCACTGCCAAGTAGCA 59.966 61.111 0.00 0.00 41.46 3.49
2647 4469 2.034066 TGCCCACTGCCAAGTAGC 59.966 61.111 0.00 0.00 40.16 3.58
2648 4470 0.674895 GACTGCCCACTGCCAAGTAG 60.675 60.000 0.00 0.00 40.16 2.57
2649 4471 1.374947 GACTGCCCACTGCCAAGTA 59.625 57.895 0.00 0.00 40.16 2.24
2650 4472 2.113986 GACTGCCCACTGCCAAGT 59.886 61.111 0.00 0.00 40.16 3.16
2651 4473 3.052082 CGACTGCCCACTGCCAAG 61.052 66.667 0.00 0.00 40.16 3.61
2652 4474 3.535629 CTCGACTGCCCACTGCCAA 62.536 63.158 0.00 0.00 40.16 4.52
2653 4475 4.007644 CTCGACTGCCCACTGCCA 62.008 66.667 0.00 0.00 40.16 4.92
2654 4476 2.564553 CTACTCGACTGCCCACTGCC 62.565 65.000 0.00 0.00 40.16 4.85
2655 4477 1.153745 CTACTCGACTGCCCACTGC 60.154 63.158 0.00 0.00 41.77 4.40
2656 4478 1.402259 CTACTACTCGACTGCCCACTG 59.598 57.143 0.00 0.00 0.00 3.66
2657 4479 1.682394 CCTACTACTCGACTGCCCACT 60.682 57.143 0.00 0.00 0.00 4.00
2658 4480 0.739561 CCTACTACTCGACTGCCCAC 59.260 60.000 0.00 0.00 0.00 4.61
2659 4481 0.330604 ACCTACTACTCGACTGCCCA 59.669 55.000 0.00 0.00 0.00 5.36
2660 4482 1.472188 AACCTACTACTCGACTGCCC 58.528 55.000 0.00 0.00 0.00 5.36
2661 4483 2.230750 ACAAACCTACTACTCGACTGCC 59.769 50.000 0.00 0.00 0.00 4.85
2662 4484 3.572604 ACAAACCTACTACTCGACTGC 57.427 47.619 0.00 0.00 0.00 4.40
2663 4485 6.034683 GCAAATACAAACCTACTACTCGACTG 59.965 42.308 0.00 0.00 0.00 3.51
2664 4486 6.098017 GCAAATACAAACCTACTACTCGACT 58.902 40.000 0.00 0.00 0.00 4.18
2665 4487 5.290400 GGCAAATACAAACCTACTACTCGAC 59.710 44.000 0.00 0.00 0.00 4.20
2666 4488 5.047164 TGGCAAATACAAACCTACTACTCGA 60.047 40.000 0.00 0.00 0.00 4.04
2667 4489 5.172934 TGGCAAATACAAACCTACTACTCG 58.827 41.667 0.00 0.00 0.00 4.18
2668 4490 6.038271 CCATGGCAAATACAAACCTACTACTC 59.962 42.308 0.00 0.00 0.00 2.59
2669 4491 5.885912 CCATGGCAAATACAAACCTACTACT 59.114 40.000 0.00 0.00 0.00 2.57
2670 4492 5.067283 CCCATGGCAAATACAAACCTACTAC 59.933 44.000 6.09 0.00 0.00 2.73
2671 4493 5.044772 TCCCATGGCAAATACAAACCTACTA 60.045 40.000 6.09 0.00 0.00 1.82
2672 4494 4.023291 CCCATGGCAAATACAAACCTACT 58.977 43.478 6.09 0.00 0.00 2.57
2673 4495 4.020543 TCCCATGGCAAATACAAACCTAC 58.979 43.478 6.09 0.00 0.00 3.18
2686 4508 0.409092 ATCACCTTGTTCCCATGGCA 59.591 50.000 6.09 0.00 39.04 4.92
2687 4509 1.560505 AATCACCTTGTTCCCATGGC 58.439 50.000 6.09 0.00 39.04 4.40
2688 4510 3.324556 ACAAAATCACCTTGTTCCCATGG 59.675 43.478 4.14 4.14 40.78 3.66
2690 4512 5.628797 AAACAAAATCACCTTGTTCCCAT 57.371 34.783 1.74 0.00 44.25 4.00
2691 4513 5.181748 CAAAACAAAATCACCTTGTTCCCA 58.818 37.500 1.74 0.00 44.25 4.37
2692 4514 4.035091 GCAAAACAAAATCACCTTGTTCCC 59.965 41.667 1.74 0.00 44.25 3.97
2694 4516 4.781883 GCGCAAAACAAAATCACCTTGTTC 60.782 41.667 0.30 0.00 44.25 3.18
2697 4519 2.606725 TGCGCAAAACAAAATCACCTTG 59.393 40.909 8.16 0.00 0.00 3.61
2698 4520 2.898705 TGCGCAAAACAAAATCACCTT 58.101 38.095 8.16 0.00 0.00 3.50
2699 4521 2.593346 TGCGCAAAACAAAATCACCT 57.407 40.000 8.16 0.00 0.00 4.00
2705 4527 2.886081 AGTGTCATGCGCAAAACAAAA 58.114 38.095 24.34 5.16 0.00 2.44
2721 4543 7.773690 AGAAACACCACATTTCTTAGTTAGTGT 59.226 33.333 0.00 0.00 42.46 3.55
2728 4550 6.824305 ATCCAGAAACACCACATTTCTTAG 57.176 37.500 0.00 0.00 42.46 2.18
2729 4551 6.775142 TGAATCCAGAAACACCACATTTCTTA 59.225 34.615 0.00 0.00 42.46 2.10
2739 5745 7.710475 TGAGAAAATTTTGAATCCAGAAACACC 59.290 33.333 8.47 0.00 0.00 4.16
2784 5790 6.213600 ACAGGCTACATTTCCTAGAAGAAAGA 59.786 38.462 0.00 0.00 39.04 2.52
2785 5791 6.314896 CACAGGCTACATTTCCTAGAAGAAAG 59.685 42.308 0.00 0.00 39.04 2.62
2794 5800 2.795329 CAACCACAGGCTACATTTCCT 58.205 47.619 0.00 0.00 0.00 3.36
2798 5804 0.036164 TCGCAACCACAGGCTACATT 59.964 50.000 0.00 0.00 0.00 2.71
2799 5805 0.391661 CTCGCAACCACAGGCTACAT 60.392 55.000 0.00 0.00 0.00 2.29
2804 5810 3.730761 CTGCTCGCAACCACAGGC 61.731 66.667 0.00 0.00 0.00 4.85
2808 5814 2.281484 TTCCCTGCTCGCAACCAC 60.281 61.111 0.00 0.00 0.00 4.16
2809 5815 2.281484 GTTCCCTGCTCGCAACCA 60.281 61.111 0.00 0.00 0.00 3.67
2811 5817 0.668535 AAAAGTTCCCTGCTCGCAAC 59.331 50.000 0.00 0.00 0.00 4.17
2813 5819 0.179032 TGAAAAGTTCCCTGCTCGCA 60.179 50.000 0.00 0.00 0.00 5.10
2814 5820 0.519077 CTGAAAAGTTCCCTGCTCGC 59.481 55.000 0.00 0.00 0.00 5.03
2815 5821 2.072298 CTCTGAAAAGTTCCCTGCTCG 58.928 52.381 0.00 0.00 0.00 5.03
2816 5822 3.133141 ACTCTGAAAAGTTCCCTGCTC 57.867 47.619 0.00 0.00 0.00 4.26
2818 5824 3.906014 GAACTCTGAAAAGTTCCCTGC 57.094 47.619 5.65 0.00 46.16 4.85
2855 5863 0.972883 TTTTTGCGGGGGAATGGAAG 59.027 50.000 0.00 0.00 0.00 3.46
2878 5886 9.167311 GATGTGTATTGTAATGGAAGAGTTTCT 57.833 33.333 0.00 0.00 33.68 2.52
2879 5887 8.946085 TGATGTGTATTGTAATGGAAGAGTTTC 58.054 33.333 0.00 0.00 0.00 2.78
2880 5888 8.730680 GTGATGTGTATTGTAATGGAAGAGTTT 58.269 33.333 0.00 0.00 0.00 2.66
2881 5889 8.103305 AGTGATGTGTATTGTAATGGAAGAGTT 58.897 33.333 0.00 0.00 0.00 3.01
2882 5890 7.624549 AGTGATGTGTATTGTAATGGAAGAGT 58.375 34.615 0.00 0.00 0.00 3.24
2883 5891 8.498054 AAGTGATGTGTATTGTAATGGAAGAG 57.502 34.615 0.00 0.00 0.00 2.85
2884 5892 9.952030 TTAAGTGATGTGTATTGTAATGGAAGA 57.048 29.630 0.00 0.00 0.00 2.87
2887 5895 9.733556 AGTTTAAGTGATGTGTATTGTAATGGA 57.266 29.630 0.00 0.00 0.00 3.41
2894 5902 7.687941 AGGGAAGTTTAAGTGATGTGTATTG 57.312 36.000 0.00 0.00 0.00 1.90
2915 5923 9.410556 CATTTCATTGAAAGTACAAAGTTAGGG 57.589 33.333 16.34 0.00 34.92 3.53
2921 5942 6.458210 AGGGCATTTCATTGAAAGTACAAAG 58.542 36.000 16.34 3.26 34.92 2.77
2926 5947 6.095440 GCTAGAAGGGCATTTCATTGAAAGTA 59.905 38.462 16.34 0.00 34.92 2.24
2928 5949 5.126707 AGCTAGAAGGGCATTTCATTGAAAG 59.873 40.000 16.34 10.03 34.92 2.62
2932 5953 4.996788 AAGCTAGAAGGGCATTTCATTG 57.003 40.909 0.00 0.00 0.00 2.82
2939 5960 1.689273 CCGACTAAGCTAGAAGGGCAT 59.311 52.381 0.00 0.00 0.00 4.40
2945 5966 3.944015 GTGGTCTACCGACTAAGCTAGAA 59.056 47.826 0.00 0.00 40.10 2.10
2953 5974 1.180029 GCCTTGTGGTCTACCGACTA 58.820 55.000 0.00 0.00 40.10 2.59
2957 5978 4.913126 GAGCCTTGTGGTCTACCG 57.087 61.111 0.00 0.00 38.47 4.02
2964 5985 3.425162 AGAAGGTTAAGAGCCTTGTGG 57.575 47.619 0.00 0.00 45.51 4.17
2966 5987 3.425162 CCAGAAGGTTAAGAGCCTTGT 57.575 47.619 0.00 0.00 45.51 3.16
2983 6004 2.646121 GGCTCAAACCCAAGACCAG 58.354 57.895 0.00 0.00 0.00 4.00
3023 6045 7.315142 TCATCAAAAGCTAAAGGCAACATAAG 58.685 34.615 0.00 0.00 44.79 1.73
3026 6048 5.726980 TCATCAAAAGCTAAAGGCAACAT 57.273 34.783 0.00 0.00 44.79 2.71
3027 6049 5.528043 TTCATCAAAAGCTAAAGGCAACA 57.472 34.783 0.00 0.00 44.79 3.33
3029 6051 5.911752 TGTTTCATCAAAAGCTAAAGGCAA 58.088 33.333 0.00 0.00 44.79 4.52
3031 6053 6.843069 TTTGTTTCATCAAAAGCTAAAGGC 57.157 33.333 0.00 0.00 34.90 4.35
3068 6090 9.733556 TTGTATTTATGCCACCTAGTTATATGG 57.266 33.333 0.00 0.00 35.17 2.74
3113 6150 6.926630 AGGTGACTAGAGAGATCACTTTTT 57.073 37.500 9.52 0.00 42.00 1.94
3130 6167 3.084039 TGGATGAGATGCAAAAGGTGAC 58.916 45.455 0.00 0.00 0.00 3.67
3149 6186 7.880160 TCTATCAGGAATATTTGTGGTTTGG 57.120 36.000 0.00 0.00 0.00 3.28
3172 6648 9.315525 GTAAAAGTTGGTTATAGAGATCACCTC 57.684 37.037 0.00 0.00 42.28 3.85
3226 6702 9.341899 GCAAATTAGGTGTTATGTAACTTTCAG 57.658 33.333 4.71 0.00 37.12 3.02
3266 6742 3.062042 CAGCTTTCCAAATCTTTGTGGC 58.938 45.455 2.29 1.64 36.45 5.01
3296 6772 7.706607 TCAACGATGTTAGGTTCTCAGATATTG 59.293 37.037 0.00 0.00 0.00 1.90
3300 6776 5.661056 TCAACGATGTTAGGTTCTCAGAT 57.339 39.130 0.00 0.00 0.00 2.90
3302 6778 5.410924 TGATCAACGATGTTAGGTTCTCAG 58.589 41.667 0.00 0.00 0.00 3.35
3306 6783 6.092122 TGTGAATGATCAACGATGTTAGGTTC 59.908 38.462 0.00 0.00 37.30 3.62
3321 6798 3.503363 TCAGCCAAAGTGTGTGAATGATC 59.497 43.478 0.00 0.00 0.00 2.92
3323 6800 2.929641 TCAGCCAAAGTGTGTGAATGA 58.070 42.857 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.