Multiple sequence alignment - TraesCS3D01G497800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G497800 chr3D 100.000 3359 0 0 1 3359 588836003 588832645 0.000000e+00 6204.0
1 TraesCS3D01G497800 chr3D 87.737 1737 160 24 645 2378 589217070 589218756 0.000000e+00 1978.0
2 TraesCS3D01G497800 chr3A 87.950 1751 155 23 756 2484 719110181 719108465 0.000000e+00 2013.0
3 TraesCS3D01G497800 chr3A 89.020 255 24 4 26 277 127914788 127915041 2.520000e-81 313.0
4 TraesCS3D01G497800 chr3A 95.000 80 4 0 1334 1413 572568170 572568249 3.520000e-25 126.0
5 TraesCS3D01G497800 chr3A 100.000 28 0 0 1 28 719110292 719110265 6.000000e-03 52.8
6 TraesCS3D01G497800 chr3B 89.325 1527 137 17 976 2481 787567970 787566449 0.000000e+00 1893.0
7 TraesCS3D01G497800 chr3B 92.175 639 19 6 828 1455 787459607 787458989 0.000000e+00 874.0
8 TraesCS3D01G497800 chr3B 95.686 510 21 1 1583 2092 787443407 787442899 0.000000e+00 819.0
9 TraesCS3D01G497800 chr3B 97.378 267 7 0 2099 2365 787441265 787440999 3.950000e-124 455.0
10 TraesCS3D01G497800 chr3B 88.401 319 34 1 973 1288 787797659 787797977 6.800000e-102 381.0
11 TraesCS3D01G497800 chr3B 90.625 192 18 0 1922 2113 787797997 787798188 4.300000e-64 255.0
12 TraesCS3D01G497800 chr3B 86.449 214 22 6 648 858 787568378 787568169 9.380000e-56 228.0
13 TraesCS3D01G497800 chr3B 82.609 207 25 5 278 482 585141726 585141529 4.460000e-39 172.0
14 TraesCS3D01G497800 chr3B 97.849 93 2 0 1495 1587 787458993 787458901 9.640000e-36 161.0
15 TraesCS3D01G497800 chr3B 85.938 128 18 0 1291 1418 763308061 763307934 1.630000e-28 137.0
16 TraesCS3D01G497800 chr3B 100.000 31 0 0 772 802 787459631 787459601 1.300000e-04 58.4
17 TraesCS3D01G497800 chr1D 88.367 851 54 13 2554 3359 429030509 429029659 0.000000e+00 981.0
18 TraesCS3D01G497800 chr1D 87.843 839 73 12 2536 3356 452210561 452209734 0.000000e+00 957.0
19 TraesCS3D01G497800 chr1D 90.196 255 21 4 26 277 397219720 397219973 2.500000e-86 329.0
20 TraesCS3D01G497800 chr2B 86.774 809 79 18 2567 3356 422508243 422507444 0.000000e+00 876.0
21 TraesCS3D01G497800 chr1B 89.608 510 50 3 2848 3356 622078519 622078012 0.000000e+00 645.0
22 TraesCS3D01G497800 chr1B 85.407 418 56 3 2941 3356 656108510 656108096 2.390000e-116 429.0
23 TraesCS3D01G497800 chr1B 79.114 158 30 3 268 424 655590559 655590714 4.580000e-19 106.0
24 TraesCS3D01G497800 chr4D 83.913 690 72 8 2537 3201 505448900 505448225 1.020000e-174 623.0
25 TraesCS3D01G497800 chr5B 84.554 505 74 4 2854 3356 26969179 26969681 6.470000e-137 497.0
26 TraesCS3D01G497800 chr5B 79.470 151 29 2 277 425 146827435 146827585 4.580000e-19 106.0
27 TraesCS3D01G497800 chrUn 85.407 418 56 3 2941 3356 8191338 8191752 2.390000e-116 429.0
28 TraesCS3D01G497800 chrUn 83.824 408 57 4 2941 3342 175732590 175732994 2.450000e-101 379.0
29 TraesCS3D01G497800 chr6D 90.873 252 19 4 27 277 296691409 296691657 5.370000e-88 335.0
30 TraesCS3D01G497800 chr6D 90.514 253 22 2 27 277 255024553 255024805 1.930000e-87 333.0
31 TraesCS3D01G497800 chr6A 90.909 253 18 5 27 277 423315764 423316013 5.370000e-88 335.0
32 TraesCS3D01G497800 chr6B 90.119 253 22 3 27 277 352066415 352066164 3.230000e-85 326.0
33 TraesCS3D01G497800 chr6B 89.723 253 21 5 27 277 460499205 460498956 5.410000e-83 318.0
34 TraesCS3D01G497800 chr6B 86.029 136 19 0 312 447 237704138 237704003 2.700000e-31 147.0
35 TraesCS3D01G497800 chr7A 89.062 256 22 5 23 276 700429552 700429301 2.520000e-81 313.0
36 TraesCS3D01G497800 chr1A 89.020 255 23 4 24 276 481273982 481274233 9.050000e-81 311.0
37 TraesCS3D01G497800 chr1A 86.420 81 9 2 546 626 356464564 356464642 1.660000e-13 87.9
38 TraesCS3D01G497800 chr2D 84.898 245 32 5 276 517 649604430 649604188 3.350000e-60 243.0
39 TraesCS3D01G497800 chr2D 84.343 198 27 4 287 482 572061588 572061393 1.230000e-44 191.0
40 TraesCS3D01G497800 chr2D 92.913 127 9 0 1291 1417 156599412 156599286 5.720000e-43 185.0
41 TraesCS3D01G497800 chr2A 84.298 242 34 3 278 517 140644548 140644787 2.020000e-57 233.0
42 TraesCS3D01G497800 chr2A 83.951 243 32 6 275 517 683634581 683634346 3.370000e-55 226.0
43 TraesCS3D01G497800 chr4B 83.974 156 23 2 292 446 607645389 607645235 7.510000e-32 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G497800 chr3D 588832645 588836003 3358 True 6204.000000 6204 100.000000 1 3359 1 chr3D.!!$R1 3358
1 TraesCS3D01G497800 chr3D 589217070 589218756 1686 False 1978.000000 1978 87.737000 645 2378 1 chr3D.!!$F1 1733
2 TraesCS3D01G497800 chr3A 719108465 719110292 1827 True 1032.900000 2013 93.975000 1 2484 2 chr3A.!!$R1 2483
3 TraesCS3D01G497800 chr3B 787566449 787568378 1929 True 1060.500000 1893 87.887000 648 2481 2 chr3B.!!$R5 1833
4 TraesCS3D01G497800 chr3B 787440999 787443407 2408 True 637.000000 819 96.532000 1583 2365 2 chr3B.!!$R3 782
5 TraesCS3D01G497800 chr3B 787458901 787459631 730 True 364.466667 874 96.674667 772 1587 3 chr3B.!!$R4 815
6 TraesCS3D01G497800 chr3B 787797659 787798188 529 False 318.000000 381 89.513000 973 2113 2 chr3B.!!$F1 1140
7 TraesCS3D01G497800 chr1D 429029659 429030509 850 True 981.000000 981 88.367000 2554 3359 1 chr1D.!!$R1 805
8 TraesCS3D01G497800 chr1D 452209734 452210561 827 True 957.000000 957 87.843000 2536 3356 1 chr1D.!!$R2 820
9 TraesCS3D01G497800 chr2B 422507444 422508243 799 True 876.000000 876 86.774000 2567 3356 1 chr2B.!!$R1 789
10 TraesCS3D01G497800 chr1B 622078012 622078519 507 True 645.000000 645 89.608000 2848 3356 1 chr1B.!!$R1 508
11 TraesCS3D01G497800 chr4D 505448225 505448900 675 True 623.000000 623 83.913000 2537 3201 1 chr4D.!!$R1 664
12 TraesCS3D01G497800 chr5B 26969179 26969681 502 False 497.000000 497 84.554000 2854 3356 1 chr5B.!!$F1 502

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
367 368 0.108329 ATGGACAACTACGGCGGAAG 60.108 55.0 13.24 11.09 0.0 3.46 F
1231 1409 0.037046 GCCTGCCAAACCCAAATCTG 60.037 55.0 0.00 0.00 0.0 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1770 1948 0.609957 TCAGCGTCCCGGAGAAGTTA 60.610 55.0 0.73 0.0 0.00 2.24 R
3053 4963 0.840722 AGGGAACAACCTCCACCGAT 60.841 55.0 0.00 0.0 35.43 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 8.770010 TCTTCTATATCTAAATAGCTAGCCCC 57.230 38.462 12.13 0.00 30.79 5.80
53 54 7.785506 TCTTCTATATCTAAATAGCTAGCCCCC 59.214 40.741 12.13 0.00 30.79 5.40
54 55 6.993408 TCTATATCTAAATAGCTAGCCCCCA 58.007 40.000 12.13 0.00 30.79 4.96
55 56 5.959583 ATATCTAAATAGCTAGCCCCCAC 57.040 43.478 12.13 0.00 0.00 4.61
56 57 3.346146 TCTAAATAGCTAGCCCCCACT 57.654 47.619 12.13 0.00 0.00 4.00
57 58 4.480777 TCTAAATAGCTAGCCCCCACTA 57.519 45.455 12.13 0.00 0.00 2.74
58 59 4.823107 TCTAAATAGCTAGCCCCCACTAA 58.177 43.478 12.13 0.00 0.00 2.24
59 60 3.859061 AAATAGCTAGCCCCCACTAAC 57.141 47.619 12.13 0.00 0.00 2.34
60 61 2.797285 ATAGCTAGCCCCCACTAACT 57.203 50.000 12.13 0.00 0.00 2.24
61 62 3.917324 ATAGCTAGCCCCCACTAACTA 57.083 47.619 12.13 0.00 0.00 2.24
62 63 2.797285 AGCTAGCCCCCACTAACTAT 57.203 50.000 12.13 0.00 0.00 2.12
63 64 3.061909 AGCTAGCCCCCACTAACTATT 57.938 47.619 12.13 0.00 0.00 1.73
64 65 3.394645 AGCTAGCCCCCACTAACTATTT 58.605 45.455 12.13 0.00 0.00 1.40
65 66 3.391626 AGCTAGCCCCCACTAACTATTTC 59.608 47.826 12.13 0.00 0.00 2.17
66 67 3.391626 GCTAGCCCCCACTAACTATTTCT 59.608 47.826 2.29 0.00 0.00 2.52
67 68 4.503469 GCTAGCCCCCACTAACTATTTCTC 60.503 50.000 2.29 0.00 0.00 2.87
68 69 3.737263 AGCCCCCACTAACTATTTCTCT 58.263 45.455 0.00 0.00 0.00 3.10
69 70 4.112331 AGCCCCCACTAACTATTTCTCTT 58.888 43.478 0.00 0.00 0.00 2.85
70 71 5.286221 AGCCCCCACTAACTATTTCTCTTA 58.714 41.667 0.00 0.00 0.00 2.10
71 72 5.729718 AGCCCCCACTAACTATTTCTCTTAA 59.270 40.000 0.00 0.00 0.00 1.85
72 73 5.821470 GCCCCCACTAACTATTTCTCTTAAC 59.179 44.000 0.00 0.00 0.00 2.01
73 74 6.577638 GCCCCCACTAACTATTTCTCTTAACA 60.578 42.308 0.00 0.00 0.00 2.41
74 75 7.574607 CCCCCACTAACTATTTCTCTTAACAT 58.425 38.462 0.00 0.00 0.00 2.71
75 76 7.499232 CCCCCACTAACTATTTCTCTTAACATG 59.501 40.741 0.00 0.00 0.00 3.21
76 77 7.012421 CCCCACTAACTATTTCTCTTAACATGC 59.988 40.741 0.00 0.00 0.00 4.06
77 78 7.552687 CCCACTAACTATTTCTCTTAACATGCA 59.447 37.037 0.00 0.00 0.00 3.96
78 79 8.946085 CCACTAACTATTTCTCTTAACATGCAA 58.054 33.333 0.00 0.00 0.00 4.08
79 80 9.979270 CACTAACTATTTCTCTTAACATGCAAG 57.021 33.333 0.00 0.00 0.00 4.01
80 81 8.669243 ACTAACTATTTCTCTTAACATGCAAGC 58.331 33.333 0.00 0.00 0.00 4.01
81 82 7.452880 AACTATTTCTCTTAACATGCAAGCA 57.547 32.000 0.00 0.00 0.00 3.91
82 83 7.636150 ACTATTTCTCTTAACATGCAAGCAT 57.364 32.000 0.86 0.86 37.08 3.79
94 95 3.544615 CAAGCATGCCACATCATCG 57.455 52.632 15.66 0.00 0.00 3.84
95 96 0.594028 CAAGCATGCCACATCATCGC 60.594 55.000 15.66 0.00 0.00 4.58
96 97 2.051614 GCATGCCACATCATCGCG 60.052 61.111 6.36 0.00 0.00 5.87
97 98 2.051614 CATGCCACATCATCGCGC 60.052 61.111 0.00 0.00 0.00 6.86
98 99 2.514360 ATGCCACATCATCGCGCA 60.514 55.556 8.75 0.00 0.00 6.09
99 100 2.114051 ATGCCACATCATCGCGCAA 61.114 52.632 8.75 0.00 32.35 4.85
100 101 2.277501 GCCACATCATCGCGCAAC 60.278 61.111 8.75 0.00 0.00 4.17
101 102 3.037992 GCCACATCATCGCGCAACA 62.038 57.895 8.75 0.00 0.00 3.33
102 103 1.723273 CCACATCATCGCGCAACAT 59.277 52.632 8.75 0.00 0.00 2.71
103 104 0.590481 CCACATCATCGCGCAACATG 60.590 55.000 8.75 6.42 0.00 3.21
104 105 1.063006 ACATCATCGCGCAACATGC 59.937 52.632 8.75 0.00 40.69 4.06
105 106 1.062845 CATCATCGCGCAACATGCA 59.937 52.632 8.75 0.00 45.36 3.96
106 107 0.523757 CATCATCGCGCAACATGCAA 60.524 50.000 8.75 0.00 45.36 4.08
107 108 0.248336 ATCATCGCGCAACATGCAAG 60.248 50.000 8.75 0.00 45.36 4.01
108 109 1.135108 CATCGCGCAACATGCAAGA 59.865 52.632 8.75 1.57 45.36 3.02
109 110 0.860203 CATCGCGCAACATGCAAGAG 60.860 55.000 8.75 0.00 45.36 2.85
110 111 1.020861 ATCGCGCAACATGCAAGAGA 61.021 50.000 8.75 0.00 45.36 3.10
111 112 1.207339 CGCGCAACATGCAAGAGAA 59.793 52.632 8.75 0.00 45.36 2.87
112 113 0.385849 CGCGCAACATGCAAGAGAAA 60.386 50.000 8.75 0.00 45.36 2.52
113 114 1.769733 GCGCAACATGCAAGAGAAAA 58.230 45.000 0.30 0.00 45.36 2.29
114 115 2.331194 GCGCAACATGCAAGAGAAAAT 58.669 42.857 0.30 0.00 45.36 1.82
115 116 2.091588 GCGCAACATGCAAGAGAAAATG 59.908 45.455 0.30 0.00 45.36 2.32
116 117 2.091588 CGCAACATGCAAGAGAAAATGC 59.908 45.455 0.00 0.00 45.36 3.56
117 118 2.414138 GCAACATGCAAGAGAAAATGCC 59.586 45.455 0.00 0.00 44.26 4.40
118 119 2.997986 CAACATGCAAGAGAAAATGCCC 59.002 45.455 0.00 0.00 41.87 5.36
119 120 2.250031 ACATGCAAGAGAAAATGCCCA 58.750 42.857 0.00 0.00 41.87 5.36
120 121 2.028748 ACATGCAAGAGAAAATGCCCAC 60.029 45.455 0.00 0.00 41.87 4.61
121 122 0.968405 TGCAAGAGAAAATGCCCACC 59.032 50.000 0.00 0.00 41.87 4.61
122 123 0.968405 GCAAGAGAAAATGCCCACCA 59.032 50.000 0.00 0.00 36.56 4.17
123 124 1.551883 GCAAGAGAAAATGCCCACCAT 59.448 47.619 0.00 0.00 36.56 3.55
124 125 2.417787 GCAAGAGAAAATGCCCACCATC 60.418 50.000 0.00 0.00 36.56 3.51
125 126 2.827322 CAAGAGAAAATGCCCACCATCA 59.173 45.455 0.00 0.00 31.43 3.07
126 127 2.450476 AGAGAAAATGCCCACCATCAC 58.550 47.619 0.00 0.00 31.43 3.06
127 128 2.042162 AGAGAAAATGCCCACCATCACT 59.958 45.455 0.00 0.00 31.43 3.41
128 129 3.266772 AGAGAAAATGCCCACCATCACTA 59.733 43.478 0.00 0.00 31.43 2.74
129 130 3.356290 AGAAAATGCCCACCATCACTAC 58.644 45.455 0.00 0.00 31.43 2.73
130 131 2.143876 AAATGCCCACCATCACTACC 57.856 50.000 0.00 0.00 31.43 3.18
131 132 0.998928 AATGCCCACCATCACTACCA 59.001 50.000 0.00 0.00 31.43 3.25
132 133 1.225373 ATGCCCACCATCACTACCAT 58.775 50.000 0.00 0.00 0.00 3.55
133 134 1.886422 TGCCCACCATCACTACCATA 58.114 50.000 0.00 0.00 0.00 2.74
134 135 2.417652 TGCCCACCATCACTACCATAT 58.582 47.619 0.00 0.00 0.00 1.78
135 136 2.106338 TGCCCACCATCACTACCATATG 59.894 50.000 0.00 0.00 0.00 1.78
136 137 2.106511 GCCCACCATCACTACCATATGT 59.893 50.000 1.24 0.00 0.00 2.29
137 138 3.435026 GCCCACCATCACTACCATATGTT 60.435 47.826 1.24 0.00 0.00 2.71
138 139 4.792068 CCCACCATCACTACCATATGTTT 58.208 43.478 1.24 0.00 0.00 2.83
139 140 4.821805 CCCACCATCACTACCATATGTTTC 59.178 45.833 1.24 0.00 0.00 2.78
140 141 5.397899 CCCACCATCACTACCATATGTTTCT 60.398 44.000 1.24 0.00 0.00 2.52
141 142 5.760253 CCACCATCACTACCATATGTTTCTC 59.240 44.000 1.24 0.00 0.00 2.87
142 143 6.348498 CACCATCACTACCATATGTTTCTCA 58.652 40.000 1.24 0.00 0.00 3.27
143 144 6.823182 CACCATCACTACCATATGTTTCTCAA 59.177 38.462 1.24 0.00 0.00 3.02
144 145 6.823689 ACCATCACTACCATATGTTTCTCAAC 59.176 38.462 1.24 0.00 0.00 3.18
156 157 5.627499 TGTTTCTCAACATGTAAGGATGC 57.373 39.130 0.00 0.00 38.03 3.91
157 158 4.458989 TGTTTCTCAACATGTAAGGATGCC 59.541 41.667 0.00 0.00 38.03 4.40
158 159 3.998913 TCTCAACATGTAAGGATGCCA 57.001 42.857 0.00 0.00 0.00 4.92
159 160 3.609853 TCTCAACATGTAAGGATGCCAC 58.390 45.455 0.00 0.00 0.00 5.01
160 161 3.264193 TCTCAACATGTAAGGATGCCACT 59.736 43.478 0.00 0.00 0.00 4.00
161 162 4.012374 CTCAACATGTAAGGATGCCACTT 58.988 43.478 0.00 0.00 0.00 3.16
162 163 4.009675 TCAACATGTAAGGATGCCACTTC 58.990 43.478 0.00 0.00 0.00 3.01
163 164 3.719268 ACATGTAAGGATGCCACTTCA 57.281 42.857 0.00 0.00 0.00 3.02
164 165 4.240881 ACATGTAAGGATGCCACTTCAT 57.759 40.909 0.00 0.00 0.00 2.57
165 166 4.202441 ACATGTAAGGATGCCACTTCATC 58.798 43.478 0.00 0.00 41.51 2.92
166 167 3.998913 TGTAAGGATGCCACTTCATCA 57.001 42.857 6.16 0.00 43.44 3.07
167 168 4.508551 TGTAAGGATGCCACTTCATCAT 57.491 40.909 6.16 0.00 43.44 2.45
168 169 4.201657 TGTAAGGATGCCACTTCATCATG 58.798 43.478 6.16 0.00 43.44 3.07
169 170 3.657398 AAGGATGCCACTTCATCATGA 57.343 42.857 0.00 0.00 43.44 3.07
170 171 3.657398 AGGATGCCACTTCATCATGAA 57.343 42.857 0.00 0.00 43.44 2.57
171 172 3.972133 AGGATGCCACTTCATCATGAAA 58.028 40.909 0.00 0.00 43.44 2.69
172 173 3.698040 AGGATGCCACTTCATCATGAAAC 59.302 43.478 0.00 0.00 43.44 2.78
173 174 3.444742 GGATGCCACTTCATCATGAAACA 59.555 43.478 0.00 0.00 43.44 2.83
174 175 4.098960 GGATGCCACTTCATCATGAAACAT 59.901 41.667 0.00 3.43 43.44 2.71
175 176 4.443913 TGCCACTTCATCATGAAACATG 57.556 40.909 0.00 5.51 35.73 3.21
176 177 3.184541 GCCACTTCATCATGAAACATGC 58.815 45.455 0.00 0.00 35.73 4.06
177 178 3.367600 GCCACTTCATCATGAAACATGCA 60.368 43.478 0.00 0.00 35.73 3.96
178 179 4.679639 GCCACTTCATCATGAAACATGCAT 60.680 41.667 0.00 0.00 35.73 3.96
179 180 4.803613 CCACTTCATCATGAAACATGCATG 59.196 41.667 25.09 25.09 43.39 4.06
180 181 4.803613 CACTTCATCATGAAACATGCATGG 59.196 41.667 29.41 11.47 42.53 3.66
181 182 4.707934 ACTTCATCATGAAACATGCATGGA 59.292 37.500 29.41 16.34 42.53 3.41
182 183 5.186215 ACTTCATCATGAAACATGCATGGAA 59.814 36.000 29.41 17.55 42.53 3.53
183 184 5.662674 TCATCATGAAACATGCATGGAAA 57.337 34.783 29.41 13.07 42.53 3.13
184 185 6.038997 TCATCATGAAACATGCATGGAAAA 57.961 33.333 29.41 13.42 42.53 2.29
185 186 6.465084 TCATCATGAAACATGCATGGAAAAA 58.535 32.000 29.41 12.03 42.53 1.94
204 205 5.534207 AAAAAGACCATCTCAACATGCAA 57.466 34.783 0.00 0.00 0.00 4.08
205 206 5.534207 AAAAGACCATCTCAACATGCAAA 57.466 34.783 0.00 0.00 0.00 3.68
206 207 5.534207 AAAGACCATCTCAACATGCAAAA 57.466 34.783 0.00 0.00 0.00 2.44
207 208 5.534207 AAGACCATCTCAACATGCAAAAA 57.466 34.783 0.00 0.00 0.00 1.94
208 209 5.733620 AGACCATCTCAACATGCAAAAAT 57.266 34.783 0.00 0.00 0.00 1.82
209 210 6.839124 AGACCATCTCAACATGCAAAAATA 57.161 33.333 0.00 0.00 0.00 1.40
210 211 6.624423 AGACCATCTCAACATGCAAAAATAC 58.376 36.000 0.00 0.00 0.00 1.89
211 212 6.209192 AGACCATCTCAACATGCAAAAATACA 59.791 34.615 0.00 0.00 0.00 2.29
212 213 6.938507 ACCATCTCAACATGCAAAAATACAT 58.061 32.000 0.00 0.00 0.00 2.29
214 215 7.036829 CCATCTCAACATGCAAAAATACATGA 58.963 34.615 9.77 0.00 45.23 3.07
215 216 7.222031 CCATCTCAACATGCAAAAATACATGAG 59.778 37.037 9.77 0.00 45.23 2.90
216 217 7.451501 TCTCAACATGCAAAAATACATGAGA 57.548 32.000 9.77 0.00 45.23 3.27
217 218 7.884257 TCTCAACATGCAAAAATACATGAGAA 58.116 30.769 9.77 0.00 45.23 2.87
218 219 8.525316 TCTCAACATGCAAAAATACATGAGAAT 58.475 29.630 9.77 0.00 45.23 2.40
219 220 9.146984 CTCAACATGCAAAAATACATGAGAATT 57.853 29.630 9.77 0.00 45.23 2.17
220 221 9.491675 TCAACATGCAAAAATACATGAGAATTT 57.508 25.926 9.77 0.00 45.23 1.82
221 222 9.749490 CAACATGCAAAAATACATGAGAATTTC 57.251 29.630 9.77 0.00 45.23 2.17
222 223 9.491675 AACATGCAAAAATACATGAGAATTTCA 57.508 25.926 9.77 0.00 45.23 2.69
291 292 7.881775 AGTAATCAAATACTCCAACCATTCC 57.118 36.000 0.00 0.00 30.26 3.01
292 293 7.410174 AGTAATCAAATACTCCAACCATTCCA 58.590 34.615 0.00 0.00 30.26 3.53
293 294 8.061304 AGTAATCAAATACTCCAACCATTCCAT 58.939 33.333 0.00 0.00 30.26 3.41
294 295 9.349713 GTAATCAAATACTCCAACCATTCCATA 57.650 33.333 0.00 0.00 0.00 2.74
295 296 8.837099 AATCAAATACTCCAACCATTCCATAA 57.163 30.769 0.00 0.00 0.00 1.90
296 297 9.438163 AATCAAATACTCCAACCATTCCATAAT 57.562 29.630 0.00 0.00 0.00 1.28
297 298 8.236585 TCAAATACTCCAACCATTCCATAATG 57.763 34.615 0.00 0.00 41.90 1.90
298 299 7.838696 TCAAATACTCCAACCATTCCATAATGT 59.161 33.333 0.00 0.00 40.84 2.71
299 300 9.130661 CAAATACTCCAACCATTCCATAATGTA 57.869 33.333 0.00 0.00 40.84 2.29
300 301 8.924511 AATACTCCAACCATTCCATAATGTAG 57.075 34.615 0.00 0.00 40.84 2.74
301 302 6.327386 ACTCCAACCATTCCATAATGTAGT 57.673 37.500 0.00 0.00 40.84 2.73
302 303 6.122277 ACTCCAACCATTCCATAATGTAGTG 58.878 40.000 0.00 0.00 40.84 2.74
303 304 4.887071 TCCAACCATTCCATAATGTAGTGC 59.113 41.667 0.00 0.00 40.84 4.40
304 305 4.644234 CCAACCATTCCATAATGTAGTGCA 59.356 41.667 0.00 0.00 40.84 4.57
305 306 5.302568 CCAACCATTCCATAATGTAGTGCAT 59.697 40.000 0.00 0.00 40.84 3.96
306 307 6.441274 CAACCATTCCATAATGTAGTGCATC 58.559 40.000 0.00 0.00 40.84 3.91
307 308 5.693961 ACCATTCCATAATGTAGTGCATCA 58.306 37.500 0.00 0.00 40.84 3.07
308 309 5.532406 ACCATTCCATAATGTAGTGCATCAC 59.468 40.000 0.00 0.00 40.84 3.06
309 310 5.532032 CCATTCCATAATGTAGTGCATCACA 59.468 40.000 5.88 5.88 40.84 3.58
310 311 6.208007 CCATTCCATAATGTAGTGCATCACAT 59.792 38.462 9.62 9.62 40.84 3.21
311 312 7.255695 CCATTCCATAATGTAGTGCATCACATT 60.256 37.037 23.88 23.88 45.07 2.71
312 313 7.643569 TTCCATAATGTAGTGCATCACATTT 57.356 32.000 24.95 14.72 41.43 2.32
313 314 7.643569 TCCATAATGTAGTGCATCACATTTT 57.356 32.000 24.95 17.96 41.43 1.82
314 315 8.065473 TCCATAATGTAGTGCATCACATTTTT 57.935 30.769 24.95 15.05 41.43 1.94
350 351 9.487790 AGTTTGACCATAAATTTAACCAACATG 57.512 29.630 1.21 0.00 0.00 3.21
351 352 8.716909 GTTTGACCATAAATTTAACCAACATGG 58.283 33.333 10.89 10.89 45.02 3.66
352 353 7.782897 TGACCATAAATTTAACCAACATGGA 57.217 32.000 17.01 0.00 40.96 3.41
353 354 7.607250 TGACCATAAATTTAACCAACATGGAC 58.393 34.615 17.01 12.59 40.96 4.02
354 355 7.233553 TGACCATAAATTTAACCAACATGGACA 59.766 33.333 17.01 14.47 40.96 4.02
355 356 7.967908 ACCATAAATTTAACCAACATGGACAA 58.032 30.769 17.01 0.00 40.96 3.18
356 357 7.875554 ACCATAAATTTAACCAACATGGACAAC 59.124 33.333 17.01 0.00 40.96 3.32
357 358 8.093927 CCATAAATTTAACCAACATGGACAACT 58.906 33.333 1.21 0.00 40.96 3.16
360 361 5.676532 TTTAACCAACATGGACAACTACG 57.323 39.130 2.85 0.00 40.96 3.51
361 362 2.178912 ACCAACATGGACAACTACGG 57.821 50.000 2.85 0.00 40.96 4.02
362 363 0.802494 CCAACATGGACAACTACGGC 59.198 55.000 0.00 0.00 40.96 5.68
363 364 0.442310 CAACATGGACAACTACGGCG 59.558 55.000 4.80 4.80 0.00 6.46
364 365 0.672401 AACATGGACAACTACGGCGG 60.672 55.000 13.24 0.00 0.00 6.13
365 366 1.216977 CATGGACAACTACGGCGGA 59.783 57.895 13.24 0.00 0.00 5.54
366 367 0.390603 CATGGACAACTACGGCGGAA 60.391 55.000 13.24 0.00 0.00 4.30
367 368 0.108329 ATGGACAACTACGGCGGAAG 60.108 55.000 13.24 11.09 0.00 3.46
384 385 5.852738 CGGAAGCATGATAGATACCTTTG 57.147 43.478 0.00 0.00 0.00 2.77
385 386 5.541845 CGGAAGCATGATAGATACCTTTGA 58.458 41.667 0.00 0.00 0.00 2.69
386 387 5.991606 CGGAAGCATGATAGATACCTTTGAA 59.008 40.000 0.00 0.00 0.00 2.69
387 388 6.652481 CGGAAGCATGATAGATACCTTTGAAT 59.348 38.462 0.00 0.00 0.00 2.57
388 389 7.173907 CGGAAGCATGATAGATACCTTTGAATT 59.826 37.037 0.00 0.00 0.00 2.17
389 390 8.510505 GGAAGCATGATAGATACCTTTGAATTC 58.489 37.037 0.00 0.00 0.00 2.17
390 391 8.985315 AAGCATGATAGATACCTTTGAATTCA 57.015 30.769 3.38 3.38 0.00 2.57
391 392 8.388484 AGCATGATAGATACCTTTGAATTCAC 57.612 34.615 7.89 0.00 0.00 3.18
392 393 7.994911 AGCATGATAGATACCTTTGAATTCACA 59.005 33.333 7.89 0.00 0.00 3.58
393 394 8.790718 GCATGATAGATACCTTTGAATTCACAT 58.209 33.333 7.89 0.93 0.00 3.21
400 401 9.918630 AGATACCTTTGAATTCACATTTGAAAG 57.081 29.630 7.89 7.19 45.01 2.62
401 402 9.912634 GATACCTTTGAATTCACATTTGAAAGA 57.087 29.630 7.89 0.00 45.01 2.52
403 404 8.652810 ACCTTTGAATTCACATTTGAAAGAAG 57.347 30.769 7.89 5.05 45.01 2.85
404 405 8.260114 ACCTTTGAATTCACATTTGAAAGAAGT 58.740 29.630 7.89 0.00 45.01 3.01
405 406 9.101655 CCTTTGAATTCACATTTGAAAGAAGTT 57.898 29.630 7.89 0.00 45.01 2.66
409 410 9.650539 TGAATTCACATTTGAAAGAAGTTTTCA 57.349 25.926 3.38 0.16 45.01 2.69
471 472 9.762381 ATGGGTCTAATTTATGGTTAAAGTTGA 57.238 29.630 0.00 0.00 31.07 3.18
472 473 9.589461 TGGGTCTAATTTATGGTTAAAGTTGAA 57.411 29.630 0.00 0.00 32.10 2.69
484 485 9.971922 ATGGTTAAAGTTGAATCTCAAAAAGAG 57.028 29.630 0.00 0.00 46.14 2.85
485 486 8.966868 TGGTTAAAGTTGAATCTCAAAAAGAGT 58.033 29.630 0.00 0.00 44.98 3.24
490 491 9.503427 AAAGTTGAATCTCAAAAAGAGTAAACG 57.497 29.630 0.00 0.00 44.72 3.60
491 492 8.209917 AGTTGAATCTCAAAAAGAGTAAACGT 57.790 30.769 0.00 0.00 44.72 3.99
492 493 9.321562 AGTTGAATCTCAAAAAGAGTAAACGTA 57.678 29.630 0.00 0.00 44.72 3.57
493 494 9.366513 GTTGAATCTCAAAAAGAGTAAACGTAC 57.633 33.333 0.00 0.00 44.98 3.67
494 495 8.882415 TGAATCTCAAAAAGAGTAAACGTACT 57.118 30.769 0.00 0.00 44.98 2.73
495 496 9.970395 TGAATCTCAAAAAGAGTAAACGTACTA 57.030 29.630 0.00 0.00 44.98 1.82
497 498 8.754230 ATCTCAAAAAGAGTAAACGTACTACC 57.246 34.615 0.00 0.00 44.98 3.18
498 499 7.945134 TCTCAAAAAGAGTAAACGTACTACCT 58.055 34.615 0.00 0.00 44.98 3.08
499 500 8.416329 TCTCAAAAAGAGTAAACGTACTACCTT 58.584 33.333 0.00 0.00 44.98 3.50
500 501 9.683069 CTCAAAAAGAGTAAACGTACTACCTTA 57.317 33.333 0.00 0.00 40.82 2.69
511 512 8.953368 AAACGTACTACCTTATAAAATGGAGG 57.047 34.615 0.00 0.00 35.39 4.30
512 513 7.902920 ACGTACTACCTTATAAAATGGAGGA 57.097 36.000 0.00 0.00 33.47 3.71
513 514 8.310122 ACGTACTACCTTATAAAATGGAGGAA 57.690 34.615 0.00 0.00 33.47 3.36
514 515 8.419442 ACGTACTACCTTATAAAATGGAGGAAG 58.581 37.037 0.00 0.00 33.47 3.46
515 516 8.419442 CGTACTACCTTATAAAATGGAGGAAGT 58.581 37.037 0.00 0.00 33.47 3.01
623 624 4.752661 GTTGTAAACTATTCCCGCAACA 57.247 40.909 0.00 0.00 45.32 3.33
624 625 5.110940 GTTGTAAACTATTCCCGCAACAA 57.889 39.130 0.00 0.00 45.32 2.83
625 626 4.752661 TGTAAACTATTCCCGCAACAAC 57.247 40.909 0.00 0.00 0.00 3.32
626 627 4.391155 TGTAAACTATTCCCGCAACAACT 58.609 39.130 0.00 0.00 0.00 3.16
627 628 4.822896 TGTAAACTATTCCCGCAACAACTT 59.177 37.500 0.00 0.00 0.00 2.66
628 629 5.996513 TGTAAACTATTCCCGCAACAACTTA 59.003 36.000 0.00 0.00 0.00 2.24
629 630 5.366829 AAACTATTCCCGCAACAACTTAC 57.633 39.130 0.00 0.00 0.00 2.34
630 631 2.997986 ACTATTCCCGCAACAACTTACG 59.002 45.455 0.00 0.00 0.00 3.18
631 632 1.161843 ATTCCCGCAACAACTTACGG 58.838 50.000 0.00 0.00 45.21 4.02
633 634 3.259930 CCGCAACAACTTACGGGG 58.740 61.111 0.00 0.00 41.95 5.73
634 635 1.598685 CCGCAACAACTTACGGGGT 60.599 57.895 0.00 0.00 41.95 4.95
635 636 0.320596 CCGCAACAACTTACGGGGTA 60.321 55.000 0.00 0.00 41.95 3.69
636 637 1.676615 CCGCAACAACTTACGGGGTAT 60.677 52.381 0.00 0.00 41.95 2.73
637 638 1.662122 CGCAACAACTTACGGGGTATC 59.338 52.381 0.00 0.00 0.00 2.24
638 639 2.702261 GCAACAACTTACGGGGTATCA 58.298 47.619 0.00 0.00 0.00 2.15
639 640 3.275999 GCAACAACTTACGGGGTATCAT 58.724 45.455 0.00 0.00 0.00 2.45
640 641 3.311596 GCAACAACTTACGGGGTATCATC 59.688 47.826 0.00 0.00 0.00 2.92
641 642 4.766375 CAACAACTTACGGGGTATCATCT 58.234 43.478 0.00 0.00 0.00 2.90
642 643 4.667519 ACAACTTACGGGGTATCATCTC 57.332 45.455 0.00 0.00 0.00 2.75
643 644 3.067742 ACAACTTACGGGGTATCATCTCG 59.932 47.826 0.00 0.00 0.00 4.04
644 645 2.941480 ACTTACGGGGTATCATCTCGT 58.059 47.619 0.00 0.00 37.78 4.18
654 655 7.094631 CGGGGTATCATCTCGTTCATATAAAA 58.905 38.462 0.00 0.00 0.00 1.52
675 676 5.695851 AACTCTAAAGCCATGACAAGTTG 57.304 39.130 0.00 0.00 0.00 3.16
676 677 4.973168 ACTCTAAAGCCATGACAAGTTGA 58.027 39.130 10.54 0.00 0.00 3.18
685 686 3.306989 CCATGACAAGTTGACAGGCTAGA 60.307 47.826 10.54 0.00 0.00 2.43
692 693 6.769512 ACAAGTTGACAGGCTAGAATTCTAA 58.230 36.000 15.85 0.00 0.00 2.10
693 694 7.224297 ACAAGTTGACAGGCTAGAATTCTAAA 58.776 34.615 15.85 3.40 0.00 1.85
697 698 8.103305 AGTTGACAGGCTAGAATTCTAAATCAA 58.897 33.333 15.85 15.66 0.00 2.57
704 705 9.566432 AGGCTAGAATTCTAAATCAATTGGTAG 57.434 33.333 15.85 5.63 0.00 3.18
709 710 8.470002 AGAATTCTAAATCAATTGGTAGTTGGC 58.530 33.333 6.06 0.00 0.00 4.52
733 763 3.458163 TACCCTCGAGCGCCTTGG 61.458 66.667 6.99 4.10 0.00 3.61
740 770 3.741476 GAGCGCCTTGGCCAACTG 61.741 66.667 16.05 10.10 0.00 3.16
752 782 1.300388 CCAACTGGCTGCAACAAGC 60.300 57.895 0.50 0.00 45.96 4.01
809 840 3.181506 GCAAAGATAAAGTCAAGAGGCCG 60.182 47.826 0.00 0.00 0.00 6.13
812 843 4.762289 AGATAAAGTCAAGAGGCCGAAT 57.238 40.909 0.00 0.00 0.00 3.34
817 848 5.819825 AAAGTCAAGAGGCCGAATAATTC 57.180 39.130 0.00 0.00 0.00 2.17
908 1059 1.753930 TACACCTCGACGCTTCCATA 58.246 50.000 0.00 0.00 0.00 2.74
1015 1190 3.320541 AGCAACCATGTCCATTCGAAAAA 59.679 39.130 0.00 0.00 0.00 1.94
1222 1400 4.347453 CAGCCGTGCCTGCCAAAC 62.347 66.667 0.00 0.00 0.00 2.93
1231 1409 0.037046 GCCTGCCAAACCCAAATCTG 60.037 55.000 0.00 0.00 0.00 2.90
1563 1741 3.998672 GGGTCGTCCACGCTCCAA 61.999 66.667 0.04 0.00 39.60 3.53
1740 1918 1.183676 ACACCTACGGCTCGGTCTTT 61.184 55.000 0.00 0.00 0.00 2.52
1770 1948 0.331954 TCCCGAGCTACAAGTCCTCT 59.668 55.000 0.00 0.00 0.00 3.69
1798 1976 4.704833 GGACGCTGAGGCTTGGCA 62.705 66.667 11.89 0.00 36.09 4.92
1799 1977 3.123620 GACGCTGAGGCTTGGCAG 61.124 66.667 11.89 5.56 36.09 4.85
2095 2273 0.505655 GTTCGACACGTGCTACAACC 59.494 55.000 17.22 0.00 0.00 3.77
2104 3909 2.345991 GCTACAACCTGACCGGCA 59.654 61.111 0.00 0.00 35.61 5.69
2367 4172 1.276138 TGCACGGCCTGATCCATATAG 59.724 52.381 0.00 0.00 0.00 1.31
2378 4183 2.094659 CCATATAGGCGCGCGAAGG 61.095 63.158 37.18 15.17 0.00 3.46
2379 4184 1.080772 CATATAGGCGCGCGAAGGA 60.081 57.895 37.18 15.65 0.00 3.36
2386 4229 2.296480 GCGCGCGAAGGATGAGTAG 61.296 63.158 37.18 0.00 0.00 2.57
2395 4238 5.638657 CGCGAAGGATGAGTAGTAGTAGTAT 59.361 44.000 0.00 0.00 0.00 2.12
2396 4239 6.810676 CGCGAAGGATGAGTAGTAGTAGTATA 59.189 42.308 0.00 0.00 0.00 1.47
2397 4240 7.009448 CGCGAAGGATGAGTAGTAGTAGTATAG 59.991 44.444 0.00 0.00 0.00 1.31
2399 4242 8.313292 CGAAGGATGAGTAGTAGTAGTATAGGT 58.687 40.741 0.00 0.00 0.00 3.08
2484 4328 4.142708 CGCATGGCACTAAGAAATGTTGTA 60.143 41.667 0.00 0.00 0.00 2.41
2485 4329 5.449041 CGCATGGCACTAAGAAATGTTGTAT 60.449 40.000 0.00 0.00 0.00 2.29
2486 4330 5.973565 GCATGGCACTAAGAAATGTTGTATC 59.026 40.000 0.00 0.00 0.00 2.24
2487 4331 6.404623 GCATGGCACTAAGAAATGTTGTATCA 60.405 38.462 0.00 0.00 0.00 2.15
2488 4332 7.682741 GCATGGCACTAAGAAATGTTGTATCAT 60.683 37.037 0.00 0.00 0.00 2.45
2489 4333 8.839343 CATGGCACTAAGAAATGTTGTATCATA 58.161 33.333 0.00 0.00 0.00 2.15
2490 4334 8.208718 TGGCACTAAGAAATGTTGTATCATAC 57.791 34.615 0.00 0.00 0.00 2.39
2491 4335 7.282224 TGGCACTAAGAAATGTTGTATCATACC 59.718 37.037 0.00 0.00 0.00 2.73
2492 4336 7.282224 GGCACTAAGAAATGTTGTATCATACCA 59.718 37.037 0.00 0.00 0.00 3.25
2493 4337 8.122952 GCACTAAGAAATGTTGTATCATACCAC 58.877 37.037 0.00 0.00 0.00 4.16
2494 4338 8.612619 CACTAAGAAATGTTGTATCATACCACC 58.387 37.037 0.00 0.00 0.00 4.61
2495 4339 8.325787 ACTAAGAAATGTTGTATCATACCACCA 58.674 33.333 0.00 0.00 0.00 4.17
2496 4340 9.173021 CTAAGAAATGTTGTATCATACCACCAA 57.827 33.333 0.00 0.00 0.00 3.67
2497 4341 7.391148 AGAAATGTTGTATCATACCACCAAC 57.609 36.000 0.00 0.00 36.74 3.77
2498 4342 7.175104 AGAAATGTTGTATCATACCACCAACT 58.825 34.615 0.00 0.00 37.04 3.16
2499 4343 8.325787 AGAAATGTTGTATCATACCACCAACTA 58.674 33.333 0.00 0.00 37.04 2.24
2500 4344 7.859325 AATGTTGTATCATACCACCAACTAC 57.141 36.000 0.00 0.00 37.04 2.73
2501 4345 6.361768 TGTTGTATCATACCACCAACTACA 57.638 37.500 0.00 0.00 37.04 2.74
2502 4346 6.403049 TGTTGTATCATACCACCAACTACAG 58.597 40.000 0.00 0.00 37.04 2.74
2503 4347 5.018539 TGTATCATACCACCAACTACAGC 57.981 43.478 0.00 0.00 0.00 4.40
2504 4348 4.714802 TGTATCATACCACCAACTACAGCT 59.285 41.667 0.00 0.00 0.00 4.24
2505 4349 3.887621 TCATACCACCAACTACAGCTC 57.112 47.619 0.00 0.00 0.00 4.09
2506 4350 3.441101 TCATACCACCAACTACAGCTCT 58.559 45.455 0.00 0.00 0.00 4.09
2507 4351 3.447586 TCATACCACCAACTACAGCTCTC 59.552 47.826 0.00 0.00 0.00 3.20
2508 4352 2.016905 ACCACCAACTACAGCTCTCT 57.983 50.000 0.00 0.00 0.00 3.10
2509 4353 2.330216 ACCACCAACTACAGCTCTCTT 58.670 47.619 0.00 0.00 0.00 2.85
2510 4354 2.706190 ACCACCAACTACAGCTCTCTTT 59.294 45.455 0.00 0.00 0.00 2.52
2511 4355 3.136626 ACCACCAACTACAGCTCTCTTTT 59.863 43.478 0.00 0.00 0.00 2.27
2512 4356 4.137543 CCACCAACTACAGCTCTCTTTTT 58.862 43.478 0.00 0.00 0.00 1.94
2550 4394 4.753662 TCTCTCCCCGACCCCGTG 62.754 72.222 0.00 0.00 0.00 4.94
2753 4598 2.113243 GACTCGGGTGGGTTTGCTCT 62.113 60.000 0.00 0.00 0.00 4.09
2948 4857 2.032528 GGTGGCTACTGTGCTGCA 59.967 61.111 0.00 0.00 0.00 4.41
2977 4887 3.793144 GCAGCAGCGGGAACTTCG 61.793 66.667 0.00 0.00 0.00 3.79
3184 5094 0.603975 GGTGTCCTCAAGACTGTGCC 60.604 60.000 0.00 0.00 46.46 5.01
3247 5158 1.162329 TCCTGGGGTGTGGGTGTAT 59.838 57.895 0.00 0.00 0.00 2.29
3343 5254 1.190178 GGGTGTCGGGTGTACCTCTT 61.190 60.000 0.44 0.00 36.97 2.85
3356 5267 3.335786 TGTACCTCTTCCTCACTTCCCTA 59.664 47.826 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.565398 TGGGGGCTAGCTATTTAGATATAGAAG 59.435 40.741 15.72 0.00 31.10 2.85
29 30 7.344871 GTGGGGGCTAGCTATTTAGATATAGAA 59.655 40.741 15.72 0.00 31.10 2.10
30 31 6.839657 GTGGGGGCTAGCTATTTAGATATAGA 59.160 42.308 15.72 0.00 31.10 1.98
31 32 6.841755 AGTGGGGGCTAGCTATTTAGATATAG 59.158 42.308 15.72 0.00 0.00 1.31
32 33 6.753134 AGTGGGGGCTAGCTATTTAGATATA 58.247 40.000 15.72 0.00 0.00 0.86
33 34 5.604752 AGTGGGGGCTAGCTATTTAGATAT 58.395 41.667 15.72 0.00 0.00 1.63
34 35 5.024803 AGTGGGGGCTAGCTATTTAGATA 57.975 43.478 15.72 0.00 0.00 1.98
35 36 3.875571 AGTGGGGGCTAGCTATTTAGAT 58.124 45.455 15.72 0.00 0.00 1.98
36 37 3.346146 AGTGGGGGCTAGCTATTTAGA 57.654 47.619 15.72 0.00 0.00 2.10
37 38 4.593634 AGTTAGTGGGGGCTAGCTATTTAG 59.406 45.833 15.72 0.00 32.08 1.85
38 39 4.563782 AGTTAGTGGGGGCTAGCTATTTA 58.436 43.478 15.72 0.00 32.08 1.40
39 40 3.394645 AGTTAGTGGGGGCTAGCTATTT 58.605 45.455 15.72 0.00 32.08 1.40
40 41 3.061909 AGTTAGTGGGGGCTAGCTATT 57.938 47.619 15.72 0.00 32.08 1.73
41 42 2.797285 AGTTAGTGGGGGCTAGCTAT 57.203 50.000 15.72 0.00 32.08 2.97
42 43 3.917324 ATAGTTAGTGGGGGCTAGCTA 57.083 47.619 15.72 0.00 38.49 3.32
43 44 2.797285 ATAGTTAGTGGGGGCTAGCT 57.203 50.000 15.72 0.00 36.65 3.32
44 45 3.391626 AGAAATAGTTAGTGGGGGCTAGC 59.608 47.826 6.04 6.04 0.00 3.42
45 46 4.902448 AGAGAAATAGTTAGTGGGGGCTAG 59.098 45.833 0.00 0.00 0.00 3.42
46 47 4.892198 AGAGAAATAGTTAGTGGGGGCTA 58.108 43.478 0.00 0.00 0.00 3.93
47 48 3.737263 AGAGAAATAGTTAGTGGGGGCT 58.263 45.455 0.00 0.00 0.00 5.19
48 49 4.505324 AAGAGAAATAGTTAGTGGGGGC 57.495 45.455 0.00 0.00 0.00 5.80
49 50 6.954232 TGTTAAGAGAAATAGTTAGTGGGGG 58.046 40.000 0.00 0.00 0.00 5.40
50 51 7.012421 GCATGTTAAGAGAAATAGTTAGTGGGG 59.988 40.741 0.00 0.00 0.00 4.96
51 52 7.552687 TGCATGTTAAGAGAAATAGTTAGTGGG 59.447 37.037 0.00 0.00 0.00 4.61
52 53 8.492673 TGCATGTTAAGAGAAATAGTTAGTGG 57.507 34.615 0.00 0.00 0.00 4.00
53 54 9.979270 CTTGCATGTTAAGAGAAATAGTTAGTG 57.021 33.333 6.11 0.00 0.00 2.74
54 55 8.669243 GCTTGCATGTTAAGAGAAATAGTTAGT 58.331 33.333 13.75 0.00 0.00 2.24
55 56 8.668353 TGCTTGCATGTTAAGAGAAATAGTTAG 58.332 33.333 13.75 0.00 0.00 2.34
56 57 8.560355 TGCTTGCATGTTAAGAGAAATAGTTA 57.440 30.769 13.75 0.00 0.00 2.24
57 58 7.452880 TGCTTGCATGTTAAGAGAAATAGTT 57.547 32.000 13.75 0.00 0.00 2.24
58 59 7.478322 CATGCTTGCATGTTAAGAGAAATAGT 58.522 34.615 23.00 0.00 0.00 2.12
59 60 7.909777 CATGCTTGCATGTTAAGAGAAATAG 57.090 36.000 23.00 0.00 0.00 1.73
76 77 0.594028 GCGATGATGTGGCATGCTTG 60.594 55.000 18.92 0.34 0.00 4.01
77 78 1.731700 GCGATGATGTGGCATGCTT 59.268 52.632 18.92 0.00 0.00 3.91
78 79 2.540228 CGCGATGATGTGGCATGCT 61.540 57.895 18.92 0.00 0.00 3.79
79 80 2.051614 CGCGATGATGTGGCATGC 60.052 61.111 9.90 9.90 0.00 4.06
80 81 2.051614 GCGCGATGATGTGGCATG 60.052 61.111 12.10 0.00 0.00 4.06
81 82 2.114051 TTGCGCGATGATGTGGCAT 61.114 52.632 12.10 0.00 33.08 4.40
82 83 2.745492 TTGCGCGATGATGTGGCA 60.745 55.556 12.10 0.00 0.00 4.92
83 84 2.277501 GTTGCGCGATGATGTGGC 60.278 61.111 12.10 0.00 0.00 5.01
84 85 0.590481 CATGTTGCGCGATGATGTGG 60.590 55.000 12.10 0.00 0.00 4.17
85 86 1.197988 GCATGTTGCGCGATGATGTG 61.198 55.000 12.10 1.45 31.71 3.21
86 87 1.063006 GCATGTTGCGCGATGATGT 59.937 52.632 12.10 0.00 31.71 3.06
87 88 3.898010 GCATGTTGCGCGATGATG 58.102 55.556 12.10 14.30 31.71 3.07
96 97 2.414138 GGCATTTTCTCTTGCATGTTGC 59.586 45.455 0.00 0.00 45.29 4.17
97 98 2.997986 GGGCATTTTCTCTTGCATGTTG 59.002 45.455 0.00 0.00 40.66 3.33
98 99 2.633967 TGGGCATTTTCTCTTGCATGTT 59.366 40.909 0.00 0.00 40.66 2.71
99 100 2.028748 GTGGGCATTTTCTCTTGCATGT 60.029 45.455 0.00 0.00 40.66 3.21
100 101 2.613691 GTGGGCATTTTCTCTTGCATG 58.386 47.619 0.00 0.00 40.66 4.06
101 102 1.551883 GGTGGGCATTTTCTCTTGCAT 59.448 47.619 0.00 0.00 40.66 3.96
102 103 0.968405 GGTGGGCATTTTCTCTTGCA 59.032 50.000 0.00 0.00 40.66 4.08
103 104 0.968405 TGGTGGGCATTTTCTCTTGC 59.032 50.000 0.00 0.00 38.14 4.01
104 105 2.827322 TGATGGTGGGCATTTTCTCTTG 59.173 45.455 0.00 0.00 0.00 3.02
105 106 2.827921 GTGATGGTGGGCATTTTCTCTT 59.172 45.455 0.00 0.00 0.00 2.85
106 107 2.042162 AGTGATGGTGGGCATTTTCTCT 59.958 45.455 0.00 0.00 0.00 3.10
107 108 2.450476 AGTGATGGTGGGCATTTTCTC 58.550 47.619 0.00 0.00 0.00 2.87
108 109 2.610438 AGTGATGGTGGGCATTTTCT 57.390 45.000 0.00 0.00 0.00 2.52
109 110 2.427095 GGTAGTGATGGTGGGCATTTTC 59.573 50.000 0.00 0.00 0.00 2.29
110 111 2.225242 TGGTAGTGATGGTGGGCATTTT 60.225 45.455 0.00 0.00 0.00 1.82
111 112 1.357420 TGGTAGTGATGGTGGGCATTT 59.643 47.619 0.00 0.00 0.00 2.32
112 113 0.998928 TGGTAGTGATGGTGGGCATT 59.001 50.000 0.00 0.00 0.00 3.56
113 114 1.225373 ATGGTAGTGATGGTGGGCAT 58.775 50.000 0.00 0.00 0.00 4.40
114 115 1.886422 TATGGTAGTGATGGTGGGCA 58.114 50.000 0.00 0.00 0.00 5.36
115 116 2.106511 ACATATGGTAGTGATGGTGGGC 59.893 50.000 7.80 0.00 0.00 5.36
116 117 4.437682 AACATATGGTAGTGATGGTGGG 57.562 45.455 7.80 0.00 0.00 4.61
117 118 5.684704 AGAAACATATGGTAGTGATGGTGG 58.315 41.667 7.80 0.00 0.00 4.61
118 119 6.348498 TGAGAAACATATGGTAGTGATGGTG 58.652 40.000 7.80 0.00 0.00 4.17
119 120 6.560003 TGAGAAACATATGGTAGTGATGGT 57.440 37.500 7.80 0.00 0.00 3.55
120 121 6.823182 TGTTGAGAAACATATGGTAGTGATGG 59.177 38.462 7.80 0.00 0.00 3.51
121 122 7.848223 TGTTGAGAAACATATGGTAGTGATG 57.152 36.000 7.80 0.00 0.00 3.07
122 123 8.049117 ACATGTTGAGAAACATATGGTAGTGAT 58.951 33.333 7.80 0.00 41.12 3.06
123 124 7.394016 ACATGTTGAGAAACATATGGTAGTGA 58.606 34.615 7.80 0.00 41.12 3.41
124 125 7.615582 ACATGTTGAGAAACATATGGTAGTG 57.384 36.000 7.80 0.00 41.12 2.74
125 126 9.383519 CTTACATGTTGAGAAACATATGGTAGT 57.616 33.333 2.30 0.00 41.12 2.73
126 127 8.830580 CCTTACATGTTGAGAAACATATGGTAG 58.169 37.037 2.30 0.00 41.12 3.18
127 128 8.544622 TCCTTACATGTTGAGAAACATATGGTA 58.455 33.333 2.30 1.22 41.12 3.25
128 129 7.402054 TCCTTACATGTTGAGAAACATATGGT 58.598 34.615 2.30 0.00 41.12 3.55
129 130 7.864108 TCCTTACATGTTGAGAAACATATGG 57.136 36.000 2.30 2.92 41.12 2.74
130 131 7.859377 GCATCCTTACATGTTGAGAAACATATG 59.141 37.037 2.30 0.00 41.12 1.78
131 132 7.013655 GGCATCCTTACATGTTGAGAAACATAT 59.986 37.037 2.30 0.00 41.12 1.78
132 133 6.318648 GGCATCCTTACATGTTGAGAAACATA 59.681 38.462 2.30 0.00 41.12 2.29
133 134 5.126061 GGCATCCTTACATGTTGAGAAACAT 59.874 40.000 2.30 0.00 43.64 2.71
134 135 4.458989 GGCATCCTTACATGTTGAGAAACA 59.541 41.667 2.30 0.00 37.05 2.83
135 136 4.458989 TGGCATCCTTACATGTTGAGAAAC 59.541 41.667 2.30 0.00 0.00 2.78
136 137 4.458989 GTGGCATCCTTACATGTTGAGAAA 59.541 41.667 2.30 0.00 0.00 2.52
137 138 4.009675 GTGGCATCCTTACATGTTGAGAA 58.990 43.478 2.30 0.00 0.00 2.87
138 139 3.264193 AGTGGCATCCTTACATGTTGAGA 59.736 43.478 2.30 0.00 0.00 3.27
139 140 3.614092 AGTGGCATCCTTACATGTTGAG 58.386 45.455 2.30 2.59 0.00 3.02
140 141 3.719268 AGTGGCATCCTTACATGTTGA 57.281 42.857 2.30 0.00 0.00 3.18
141 142 3.758023 TGAAGTGGCATCCTTACATGTTG 59.242 43.478 2.30 0.00 0.00 3.33
142 143 4.032960 TGAAGTGGCATCCTTACATGTT 57.967 40.909 2.30 0.00 0.00 2.71
143 144 3.719268 TGAAGTGGCATCCTTACATGT 57.281 42.857 2.69 2.69 0.00 3.21
144 145 4.201657 TGATGAAGTGGCATCCTTACATG 58.798 43.478 0.00 0.00 43.10 3.21
145 146 4.508551 TGATGAAGTGGCATCCTTACAT 57.491 40.909 0.00 0.00 43.10 2.29
146 147 3.998913 TGATGAAGTGGCATCCTTACA 57.001 42.857 0.00 0.00 43.10 2.41
147 148 4.454678 TCATGATGAAGTGGCATCCTTAC 58.545 43.478 0.00 0.00 43.10 2.34
148 149 4.776435 TCATGATGAAGTGGCATCCTTA 57.224 40.909 0.00 0.00 43.10 2.69
149 150 3.657398 TCATGATGAAGTGGCATCCTT 57.343 42.857 0.00 0.00 43.10 3.36
150 151 3.657398 TTCATGATGAAGTGGCATCCT 57.343 42.857 3.29 0.00 43.10 3.24
151 152 3.444742 TGTTTCATGATGAAGTGGCATCC 59.555 43.478 8.01 0.00 43.10 3.51
152 153 4.707030 TGTTTCATGATGAAGTGGCATC 57.293 40.909 8.01 0.00 43.84 3.91
153 154 4.679639 GCATGTTTCATGATGAAGTGGCAT 60.680 41.667 8.01 8.78 37.70 4.40
154 155 3.367600 GCATGTTTCATGATGAAGTGGCA 60.368 43.478 8.01 7.03 37.70 4.92
155 156 3.184541 GCATGTTTCATGATGAAGTGGC 58.815 45.455 8.01 7.52 37.70 5.01
156 157 4.443913 TGCATGTTTCATGATGAAGTGG 57.556 40.909 8.01 1.64 37.70 4.00
157 158 4.803613 CCATGCATGTTTCATGATGAAGTG 59.196 41.667 24.58 9.71 42.84 3.16
158 159 4.707934 TCCATGCATGTTTCATGATGAAGT 59.292 37.500 24.58 0.00 42.84 3.01
159 160 5.257082 TCCATGCATGTTTCATGATGAAG 57.743 39.130 24.58 5.28 42.84 3.02
160 161 5.662674 TTCCATGCATGTTTCATGATGAA 57.337 34.783 24.58 14.11 42.84 2.57
161 162 5.662674 TTTCCATGCATGTTTCATGATGA 57.337 34.783 24.58 8.95 42.84 2.92
162 163 6.729391 TTTTTCCATGCATGTTTCATGATG 57.271 33.333 24.58 6.69 42.84 3.07
182 183 5.534207 TTGCATGTTGAGATGGTCTTTTT 57.466 34.783 0.00 0.00 0.00 1.94
183 184 5.534207 TTTGCATGTTGAGATGGTCTTTT 57.466 34.783 0.00 0.00 0.00 2.27
184 185 5.534207 TTTTGCATGTTGAGATGGTCTTT 57.466 34.783 0.00 0.00 0.00 2.52
185 186 5.534207 TTTTTGCATGTTGAGATGGTCTT 57.466 34.783 0.00 0.00 0.00 3.01
186 187 5.733620 ATTTTTGCATGTTGAGATGGTCT 57.266 34.783 0.00 0.00 0.00 3.85
187 188 6.389091 TGTATTTTTGCATGTTGAGATGGTC 58.611 36.000 0.00 0.00 0.00 4.02
188 189 6.343716 TGTATTTTTGCATGTTGAGATGGT 57.656 33.333 0.00 0.00 0.00 3.55
189 190 7.036829 TCATGTATTTTTGCATGTTGAGATGG 58.963 34.615 0.00 0.00 42.09 3.51
190 191 7.971722 TCTCATGTATTTTTGCATGTTGAGATG 59.028 33.333 0.00 0.00 42.09 2.90
191 192 8.058667 TCTCATGTATTTTTGCATGTTGAGAT 57.941 30.769 0.00 0.00 42.09 2.75
192 193 7.451501 TCTCATGTATTTTTGCATGTTGAGA 57.548 32.000 0.00 0.00 42.09 3.27
193 194 8.697846 ATTCTCATGTATTTTTGCATGTTGAG 57.302 30.769 0.00 0.00 42.09 3.02
194 195 9.491675 AAATTCTCATGTATTTTTGCATGTTGA 57.508 25.926 0.00 0.00 42.09 3.18
195 196 9.749490 GAAATTCTCATGTATTTTTGCATGTTG 57.251 29.630 0.00 0.00 42.09 3.33
196 197 9.491675 TGAAATTCTCATGTATTTTTGCATGTT 57.508 25.926 0.00 0.00 42.09 2.71
197 198 9.661563 ATGAAATTCTCATGTATTTTTGCATGT 57.338 25.926 0.00 0.00 43.49 3.21
265 266 9.574516 GGAATGGTTGGAGTATTTGATTACTAT 57.425 33.333 0.00 0.00 32.59 2.12
266 267 8.553153 TGGAATGGTTGGAGTATTTGATTACTA 58.447 33.333 0.00 0.00 32.59 1.82
267 268 7.410174 TGGAATGGTTGGAGTATTTGATTACT 58.590 34.615 0.00 0.00 35.13 2.24
268 269 7.639113 TGGAATGGTTGGAGTATTTGATTAC 57.361 36.000 0.00 0.00 0.00 1.89
269 270 9.928618 TTATGGAATGGTTGGAGTATTTGATTA 57.071 29.630 0.00 0.00 0.00 1.75
270 271 8.837099 TTATGGAATGGTTGGAGTATTTGATT 57.163 30.769 0.00 0.00 0.00 2.57
271 272 8.863086 CATTATGGAATGGTTGGAGTATTTGAT 58.137 33.333 0.00 0.00 39.10 2.57
272 273 7.838696 ACATTATGGAATGGTTGGAGTATTTGA 59.161 33.333 0.00 0.00 45.83 2.69
273 274 8.010733 ACATTATGGAATGGTTGGAGTATTTG 57.989 34.615 0.00 0.00 45.83 2.32
274 275 9.354673 CTACATTATGGAATGGTTGGAGTATTT 57.645 33.333 0.00 0.00 45.83 1.40
275 276 8.502738 ACTACATTATGGAATGGTTGGAGTATT 58.497 33.333 0.00 0.00 45.83 1.89
276 277 7.939039 CACTACATTATGGAATGGTTGGAGTAT 59.061 37.037 0.00 0.00 45.83 2.12
277 278 7.279615 CACTACATTATGGAATGGTTGGAGTA 58.720 38.462 0.00 0.00 45.83 2.59
278 279 6.122277 CACTACATTATGGAATGGTTGGAGT 58.878 40.000 0.00 0.00 45.83 3.85
279 280 5.009010 GCACTACATTATGGAATGGTTGGAG 59.991 44.000 0.00 0.00 45.83 3.86
280 281 4.887071 GCACTACATTATGGAATGGTTGGA 59.113 41.667 0.00 0.00 45.83 3.53
281 282 4.644234 TGCACTACATTATGGAATGGTTGG 59.356 41.667 0.00 0.00 45.83 3.77
282 283 5.833406 TGCACTACATTATGGAATGGTTG 57.167 39.130 0.00 0.00 45.83 3.77
283 284 6.039717 GTGATGCACTACATTATGGAATGGTT 59.960 38.462 0.00 0.00 45.83 3.67
284 285 5.532406 GTGATGCACTACATTATGGAATGGT 59.468 40.000 0.00 0.00 45.83 3.55
285 286 5.532032 TGTGATGCACTACATTATGGAATGG 59.468 40.000 0.00 0.00 39.88 3.16
286 287 6.622833 TGTGATGCACTACATTATGGAATG 57.377 37.500 0.00 0.00 39.84 2.67
287 288 7.828508 AATGTGATGCACTACATTATGGAAT 57.171 32.000 22.09 3.88 43.54 3.01
288 289 7.643569 AAATGTGATGCACTACATTATGGAA 57.356 32.000 23.11 0.00 44.32 3.53
289 290 7.643569 AAAATGTGATGCACTACATTATGGA 57.356 32.000 23.11 0.00 44.32 3.41
324 325 9.487790 CATGTTGGTTAAATTTATGGTCAAACT 57.512 29.630 0.00 0.00 0.00 2.66
325 326 8.716909 CCATGTTGGTTAAATTTATGGTCAAAC 58.283 33.333 0.00 2.26 31.35 2.93
326 327 8.651389 TCCATGTTGGTTAAATTTATGGTCAAA 58.349 29.630 11.74 0.00 39.03 2.69
327 328 8.091449 GTCCATGTTGGTTAAATTTATGGTCAA 58.909 33.333 11.74 6.44 39.03 3.18
328 329 7.233553 TGTCCATGTTGGTTAAATTTATGGTCA 59.766 33.333 11.74 10.18 39.03 4.02
329 330 7.607250 TGTCCATGTTGGTTAAATTTATGGTC 58.393 34.615 11.74 8.27 39.03 4.02
330 331 7.546250 TGTCCATGTTGGTTAAATTTATGGT 57.454 32.000 11.74 0.00 39.03 3.55
331 332 8.093927 AGTTGTCCATGTTGGTTAAATTTATGG 58.906 33.333 7.34 7.34 39.03 2.74
334 335 8.291032 CGTAGTTGTCCATGTTGGTTAAATTTA 58.709 33.333 0.00 0.00 39.03 1.40
335 336 7.142680 CGTAGTTGTCCATGTTGGTTAAATTT 58.857 34.615 0.00 0.00 39.03 1.82
336 337 6.294286 CCGTAGTTGTCCATGTTGGTTAAATT 60.294 38.462 0.00 0.00 39.03 1.82
337 338 5.182380 CCGTAGTTGTCCATGTTGGTTAAAT 59.818 40.000 0.00 0.00 39.03 1.40
338 339 4.515944 CCGTAGTTGTCCATGTTGGTTAAA 59.484 41.667 0.00 0.00 39.03 1.52
339 340 4.066490 CCGTAGTTGTCCATGTTGGTTAA 58.934 43.478 0.00 0.00 39.03 2.01
340 341 3.666274 CCGTAGTTGTCCATGTTGGTTA 58.334 45.455 0.00 0.00 39.03 2.85
341 342 2.500229 CCGTAGTTGTCCATGTTGGTT 58.500 47.619 0.00 0.00 39.03 3.67
342 343 1.880646 GCCGTAGTTGTCCATGTTGGT 60.881 52.381 0.00 0.00 39.03 3.67
343 344 0.802494 GCCGTAGTTGTCCATGTTGG 59.198 55.000 0.00 0.00 39.43 3.77
344 345 0.442310 CGCCGTAGTTGTCCATGTTG 59.558 55.000 0.00 0.00 0.00 3.33
345 346 0.672401 CCGCCGTAGTTGTCCATGTT 60.672 55.000 0.00 0.00 0.00 2.71
346 347 1.079405 CCGCCGTAGTTGTCCATGT 60.079 57.895 0.00 0.00 0.00 3.21
347 348 0.390603 TTCCGCCGTAGTTGTCCATG 60.391 55.000 0.00 0.00 0.00 3.66
348 349 0.108329 CTTCCGCCGTAGTTGTCCAT 60.108 55.000 0.00 0.00 0.00 3.41
349 350 1.290955 CTTCCGCCGTAGTTGTCCA 59.709 57.895 0.00 0.00 0.00 4.02
350 351 2.098831 GCTTCCGCCGTAGTTGTCC 61.099 63.158 0.00 0.00 0.00 4.02
351 352 0.739813 ATGCTTCCGCCGTAGTTGTC 60.740 55.000 0.00 0.00 34.43 3.18
352 353 1.019278 CATGCTTCCGCCGTAGTTGT 61.019 55.000 0.00 0.00 34.43 3.32
353 354 0.739462 TCATGCTTCCGCCGTAGTTG 60.739 55.000 0.00 0.00 34.43 3.16
354 355 0.178068 ATCATGCTTCCGCCGTAGTT 59.822 50.000 0.00 0.00 34.43 2.24
355 356 1.000163 CTATCATGCTTCCGCCGTAGT 60.000 52.381 0.00 0.00 34.43 2.73
356 357 1.269723 TCTATCATGCTTCCGCCGTAG 59.730 52.381 0.00 0.00 34.43 3.51
357 358 1.324383 TCTATCATGCTTCCGCCGTA 58.676 50.000 0.00 0.00 34.43 4.02
358 359 0.681733 ATCTATCATGCTTCCGCCGT 59.318 50.000 0.00 0.00 34.43 5.68
359 360 2.263077 GTATCTATCATGCTTCCGCCG 58.737 52.381 0.00 0.00 34.43 6.46
360 361 2.234908 AGGTATCTATCATGCTTCCGCC 59.765 50.000 0.00 0.00 34.43 6.13
361 362 3.601443 AGGTATCTATCATGCTTCCGC 57.399 47.619 0.00 0.00 0.00 5.54
362 363 5.541845 TCAAAGGTATCTATCATGCTTCCG 58.458 41.667 0.00 0.00 0.00 4.30
363 364 7.992754 ATTCAAAGGTATCTATCATGCTTCC 57.007 36.000 0.00 0.00 0.00 3.46
364 365 9.060347 TGAATTCAAAGGTATCTATCATGCTTC 57.940 33.333 5.45 0.00 0.00 3.86
365 366 8.844244 GTGAATTCAAAGGTATCTATCATGCTT 58.156 33.333 10.35 0.00 0.00 3.91
366 367 7.994911 TGTGAATTCAAAGGTATCTATCATGCT 59.005 33.333 10.35 0.00 0.00 3.79
367 368 8.158169 TGTGAATTCAAAGGTATCTATCATGC 57.842 34.615 10.35 0.00 0.00 4.06
374 375 9.918630 CTTTCAAATGTGAATTCAAAGGTATCT 57.081 29.630 10.35 0.00 43.29 1.98
375 376 9.912634 TCTTTCAAATGTGAATTCAAAGGTATC 57.087 29.630 10.35 0.00 43.29 2.24
377 378 9.748708 CTTCTTTCAAATGTGAATTCAAAGGTA 57.251 29.630 10.35 0.74 43.29 3.08
378 379 8.260114 ACTTCTTTCAAATGTGAATTCAAAGGT 58.740 29.630 10.35 0.61 43.29 3.50
379 380 8.652810 ACTTCTTTCAAATGTGAATTCAAAGG 57.347 30.769 10.35 0.46 43.29 3.11
383 384 9.650539 TGAAAACTTCTTTCAAATGTGAATTCA 57.349 25.926 3.38 3.38 43.29 2.57
445 446 9.762381 TCAACTTTAACCATAAATTAGACCCAT 57.238 29.630 0.00 0.00 30.88 4.00
446 447 9.589461 TTCAACTTTAACCATAAATTAGACCCA 57.411 29.630 0.00 0.00 30.88 4.51
458 459 9.971922 CTCTTTTTGAGATTCAACTTTAACCAT 57.028 29.630 0.00 0.00 45.39 3.55
459 460 8.966868 ACTCTTTTTGAGATTCAACTTTAACCA 58.033 29.630 0.00 0.00 45.39 3.67
464 465 9.503427 CGTTTACTCTTTTTGAGATTCAACTTT 57.497 29.630 0.00 0.00 45.39 2.66
465 466 8.674607 ACGTTTACTCTTTTTGAGATTCAACTT 58.325 29.630 0.00 0.00 45.39 2.66
466 467 8.209917 ACGTTTACTCTTTTTGAGATTCAACT 57.790 30.769 0.00 0.00 45.39 3.16
467 468 9.366513 GTACGTTTACTCTTTTTGAGATTCAAC 57.633 33.333 0.00 0.00 45.39 3.18
468 469 9.321562 AGTACGTTTACTCTTTTTGAGATTCAA 57.678 29.630 0.00 0.00 45.39 2.69
469 470 8.882415 AGTACGTTTACTCTTTTTGAGATTCA 57.118 30.769 0.00 0.00 45.39 2.57
471 472 9.201127 GGTAGTACGTTTACTCTTTTTGAGATT 57.799 33.333 0.00 0.00 45.39 2.40
472 473 8.583296 AGGTAGTACGTTTACTCTTTTTGAGAT 58.417 33.333 0.00 0.00 45.39 2.75
473 474 7.945134 AGGTAGTACGTTTACTCTTTTTGAGA 58.055 34.615 0.00 0.00 45.39 3.27
486 487 8.761689 TCCTCCATTTTATAAGGTAGTACGTTT 58.238 33.333 13.07 4.08 0.00 3.60
487 488 8.310122 TCCTCCATTTTATAAGGTAGTACGTT 57.690 34.615 12.51 12.51 0.00 3.99
488 489 7.902920 TCCTCCATTTTATAAGGTAGTACGT 57.097 36.000 0.00 0.00 0.00 3.57
489 490 8.419442 ACTTCCTCCATTTTATAAGGTAGTACG 58.581 37.037 0.00 0.00 37.64 3.67
593 594 8.614346 GCGGGAATAGTTTACAACACATATTAA 58.386 33.333 0.00 0.00 0.00 1.40
594 595 7.769507 TGCGGGAATAGTTTACAACACATATTA 59.230 33.333 0.00 0.00 0.00 0.98
595 596 6.600032 TGCGGGAATAGTTTACAACACATATT 59.400 34.615 0.00 0.00 0.00 1.28
596 597 6.116806 TGCGGGAATAGTTTACAACACATAT 58.883 36.000 0.00 0.00 0.00 1.78
597 598 5.489249 TGCGGGAATAGTTTACAACACATA 58.511 37.500 0.00 0.00 0.00 2.29
598 599 4.328536 TGCGGGAATAGTTTACAACACAT 58.671 39.130 0.00 0.00 0.00 3.21
599 600 3.741249 TGCGGGAATAGTTTACAACACA 58.259 40.909 0.00 0.00 0.00 3.72
600 601 4.023878 TGTTGCGGGAATAGTTTACAACAC 60.024 41.667 0.00 0.00 40.49 3.32
601 602 4.135306 TGTTGCGGGAATAGTTTACAACA 58.865 39.130 0.00 0.00 42.41 3.33
602 603 4.752661 TGTTGCGGGAATAGTTTACAAC 57.247 40.909 0.00 0.00 37.14 3.32
603 604 4.822896 AGTTGTTGCGGGAATAGTTTACAA 59.177 37.500 0.00 0.00 0.00 2.41
604 605 4.391155 AGTTGTTGCGGGAATAGTTTACA 58.609 39.130 0.00 0.00 0.00 2.41
605 606 5.366829 AAGTTGTTGCGGGAATAGTTTAC 57.633 39.130 0.00 0.00 0.00 2.01
606 607 5.120519 CGTAAGTTGTTGCGGGAATAGTTTA 59.879 40.000 0.00 0.00 38.04 2.01
607 608 4.083696 CGTAAGTTGTTGCGGGAATAGTTT 60.084 41.667 0.00 0.00 38.04 2.66
608 609 3.434299 CGTAAGTTGTTGCGGGAATAGTT 59.566 43.478 0.00 0.00 38.04 2.24
609 610 2.997986 CGTAAGTTGTTGCGGGAATAGT 59.002 45.455 0.00 0.00 38.04 2.12
610 611 3.651562 CGTAAGTTGTTGCGGGAATAG 57.348 47.619 0.00 0.00 38.04 1.73
617 618 1.662122 GATACCCCGTAAGTTGTTGCG 59.338 52.381 0.00 0.00 41.03 4.85
618 619 2.702261 TGATACCCCGTAAGTTGTTGC 58.298 47.619 0.00 0.00 0.00 4.17
619 620 4.766375 AGATGATACCCCGTAAGTTGTTG 58.234 43.478 0.00 0.00 0.00 3.33
620 621 4.441079 CGAGATGATACCCCGTAAGTTGTT 60.441 45.833 0.00 0.00 0.00 2.83
621 622 3.067742 CGAGATGATACCCCGTAAGTTGT 59.932 47.826 0.00 0.00 0.00 3.32
622 623 3.067742 ACGAGATGATACCCCGTAAGTTG 59.932 47.826 0.00 0.00 0.00 3.16
623 624 3.294214 ACGAGATGATACCCCGTAAGTT 58.706 45.455 0.00 0.00 0.00 2.66
624 625 2.941480 ACGAGATGATACCCCGTAAGT 58.059 47.619 0.00 0.00 0.00 2.24
625 626 3.317149 TGAACGAGATGATACCCCGTAAG 59.683 47.826 0.00 0.00 32.81 2.34
626 627 3.289836 TGAACGAGATGATACCCCGTAA 58.710 45.455 0.00 0.00 32.81 3.18
627 628 2.934887 TGAACGAGATGATACCCCGTA 58.065 47.619 0.00 0.00 32.81 4.02
628 629 1.771565 TGAACGAGATGATACCCCGT 58.228 50.000 0.00 0.00 34.74 5.28
629 630 4.720649 ATATGAACGAGATGATACCCCG 57.279 45.455 0.00 0.00 0.00 5.73
630 631 8.095169 AGTTTTATATGAACGAGATGATACCCC 58.905 37.037 0.00 0.00 32.38 4.95
631 632 9.141400 GAGTTTTATATGAACGAGATGATACCC 57.859 37.037 0.00 0.00 32.38 3.69
632 633 9.915629 AGAGTTTTATATGAACGAGATGATACC 57.084 33.333 0.00 0.00 32.38 2.73
638 639 9.262358 GGCTTTAGAGTTTTATATGAACGAGAT 57.738 33.333 0.00 0.00 32.38 2.75
639 640 8.255206 TGGCTTTAGAGTTTTATATGAACGAGA 58.745 33.333 0.00 0.00 32.38 4.04
640 641 8.420374 TGGCTTTAGAGTTTTATATGAACGAG 57.580 34.615 0.00 0.00 32.38 4.18
641 642 8.826710 CATGGCTTTAGAGTTTTATATGAACGA 58.173 33.333 0.00 0.00 32.38 3.85
642 643 8.826710 TCATGGCTTTAGAGTTTTATATGAACG 58.173 33.333 0.00 0.00 32.38 3.95
643 644 9.937175 GTCATGGCTTTAGAGTTTTATATGAAC 57.063 33.333 0.00 0.00 0.00 3.18
644 645 9.679661 TGTCATGGCTTTAGAGTTTTATATGAA 57.320 29.630 0.00 0.00 0.00 2.57
654 655 4.757149 GTCAACTTGTCATGGCTTTAGAGT 59.243 41.667 0.00 0.00 0.00 3.24
675 676 8.348507 CCAATTGATTTAGAATTCTAGCCTGTC 58.651 37.037 14.63 10.19 0.00 3.51
676 677 7.836183 ACCAATTGATTTAGAATTCTAGCCTGT 59.164 33.333 14.63 1.93 0.00 4.00
685 686 8.034804 GTGCCAACTACCAATTGATTTAGAATT 58.965 33.333 7.12 0.00 0.00 2.17
692 693 5.070313 ACTTTGTGCCAACTACCAATTGATT 59.930 36.000 7.12 0.00 0.00 2.57
693 694 4.588528 ACTTTGTGCCAACTACCAATTGAT 59.411 37.500 7.12 0.00 0.00 2.57
697 698 3.824443 GGTACTTTGTGCCAACTACCAAT 59.176 43.478 11.96 0.00 38.20 3.16
704 705 0.872388 CGAGGGTACTTTGTGCCAAC 59.128 55.000 7.11 0.26 40.07 3.77
709 710 1.352156 GCGCTCGAGGGTACTTTGTG 61.352 60.000 27.73 1.65 0.00 3.33
734 764 1.300388 GCTTGTTGCAGCCAGTTGG 60.300 57.895 3.61 0.00 42.31 3.77
755 785 0.739813 AAAGTAGGTAGCGCGCAAGG 60.740 55.000 35.10 0.00 38.28 3.61
756 786 0.645868 GAAAGTAGGTAGCGCGCAAG 59.354 55.000 35.10 0.00 43.44 4.01
757 787 0.245539 AGAAAGTAGGTAGCGCGCAA 59.754 50.000 35.10 10.05 0.00 4.85
758 788 0.245539 AAGAAAGTAGGTAGCGCGCA 59.754 50.000 35.10 16.82 0.00 6.09
759 789 1.060698 CAAAGAAAGTAGGTAGCGCGC 59.939 52.381 26.66 26.66 0.00 6.86
760 790 2.334838 ACAAAGAAAGTAGGTAGCGCG 58.665 47.619 0.00 0.00 0.00 6.86
761 791 3.302699 CGTACAAAGAAAGTAGGTAGCGC 59.697 47.826 0.00 0.00 0.00 5.92
762 792 3.302699 GCGTACAAAGAAAGTAGGTAGCG 59.697 47.826 0.00 0.00 31.80 4.26
763 793 4.240096 TGCGTACAAAGAAAGTAGGTAGC 58.760 43.478 0.00 0.00 31.80 3.58
809 840 3.194755 ACTTTGGCCGGTTGGAATTATTC 59.805 43.478 1.90 0.00 37.49 1.75
812 843 2.164338 GACTTTGGCCGGTTGGAATTA 58.836 47.619 1.90 0.00 37.49 1.40
817 848 0.893270 TGATGACTTTGGCCGGTTGG 60.893 55.000 1.90 0.00 38.77 3.77
882 913 5.706833 TGGAAGCGTCGAGGTGTATATATAA 59.293 40.000 7.01 0.00 0.00 0.98
908 1059 2.440817 GGTAGCTGGCCGGGTGTAT 61.441 63.158 26.69 0.00 0.00 2.29
1015 1190 0.832135 ACGGCGAGGATGGTGGATAT 60.832 55.000 16.62 0.00 0.00 1.63
1222 1400 1.475682 GCCTTTGCTCTCAGATTTGGG 59.524 52.381 0.00 0.00 33.53 4.12
1231 1409 2.815647 CGACCGGCCTTTGCTCTC 60.816 66.667 0.00 0.00 37.74 3.20
1740 1918 2.058595 GCTCGGGAGGCAGTAGGAA 61.059 63.158 0.00 0.00 0.00 3.36
1770 1948 0.609957 TCAGCGTCCCGGAGAAGTTA 60.610 55.000 0.73 0.00 0.00 2.24
1977 2155 1.968017 CAGCGTGAACATGGTGCCT 60.968 57.895 12.11 0.00 38.72 4.75
2169 3974 1.186200 TCATCACGTTCTCCTCAGGG 58.814 55.000 0.00 0.00 0.00 4.45
2345 4150 1.337384 TATGGATCAGGCCGTGCAGT 61.337 55.000 0.00 0.00 0.00 4.40
2367 4172 3.768185 TACTCATCCTTCGCGCGCC 62.768 63.158 27.95 8.11 0.00 6.53
2442 4285 3.002042 TGCGCAAAACAATCACCAATTTG 59.998 39.130 8.16 0.00 34.84 2.32
2443 4286 3.201290 TGCGCAAAACAATCACCAATTT 58.799 36.364 8.16 0.00 0.00 1.82
2448 4291 1.070038 CCATGCGCAAAACAATCACC 58.930 50.000 17.11 0.00 0.00 4.02
2484 4328 4.033709 AGAGCTGTAGTTGGTGGTATGAT 58.966 43.478 0.00 0.00 0.00 2.45
2485 4329 3.441101 AGAGCTGTAGTTGGTGGTATGA 58.559 45.455 0.00 0.00 0.00 2.15
2486 4330 3.449018 AGAGAGCTGTAGTTGGTGGTATG 59.551 47.826 0.00 0.00 0.00 2.39
2487 4331 3.714144 AGAGAGCTGTAGTTGGTGGTAT 58.286 45.455 0.00 0.00 0.00 2.73
2488 4332 3.170991 AGAGAGCTGTAGTTGGTGGTA 57.829 47.619 0.00 0.00 0.00 3.25
2489 4333 2.016905 AGAGAGCTGTAGTTGGTGGT 57.983 50.000 0.00 0.00 0.00 4.16
2490 4334 3.409026 AAAGAGAGCTGTAGTTGGTGG 57.591 47.619 0.00 0.00 0.00 4.61
2519 4363 4.516195 GAGAGGGTTCGCTCGGGC 62.516 72.222 0.00 0.00 30.63 6.13
2520 4364 2.756283 AGAGAGGGTTCGCTCGGG 60.756 66.667 10.37 0.00 43.28 5.14
2521 4365 2.802106 GAGAGAGGGTTCGCTCGG 59.198 66.667 10.37 0.00 43.28 4.63
2523 4367 2.428085 GGGGAGAGAGGGTTCGCTC 61.428 68.421 8.51 8.51 46.03 5.03
2524 4368 2.364448 GGGGAGAGAGGGTTCGCT 60.364 66.667 0.00 0.00 36.07 4.93
2525 4369 3.839432 CGGGGAGAGAGGGTTCGC 61.839 72.222 0.00 0.00 0.00 4.70
2526 4370 2.044252 TCGGGGAGAGAGGGTTCG 60.044 66.667 0.00 0.00 0.00 3.95
2527 4371 2.059190 GGTCGGGGAGAGAGGGTTC 61.059 68.421 0.00 0.00 0.00 3.62
2528 4372 2.039137 GGTCGGGGAGAGAGGGTT 59.961 66.667 0.00 0.00 0.00 4.11
2529 4373 4.077180 GGGTCGGGGAGAGAGGGT 62.077 72.222 0.00 0.00 0.00 4.34
2530 4374 4.862823 GGGGTCGGGGAGAGAGGG 62.863 77.778 0.00 0.00 0.00 4.30
2532 4376 4.444081 ACGGGGTCGGGGAGAGAG 62.444 72.222 0.00 0.00 41.39 3.20
2533 4377 4.753662 CACGGGGTCGGGGAGAGA 62.754 72.222 0.00 0.00 41.39 3.10
2732 4577 3.047877 CAAACCCACCCGAGTCGC 61.048 66.667 7.12 0.00 0.00 5.19
2789 4634 4.457496 CTCGCCGCCACCTGACAT 62.457 66.667 0.00 0.00 0.00 3.06
3053 4963 0.840722 AGGGAACAACCTCCACCGAT 60.841 55.000 0.00 0.00 35.43 4.18
3054 4964 1.460689 AGGGAACAACCTCCACCGA 60.461 57.895 0.00 0.00 35.43 4.69
3141 5051 1.798813 GACGTCTCACCATGACAAACC 59.201 52.381 8.70 0.00 34.37 3.27
3213 5123 2.722201 GGACCAATCGTCGGCTCCT 61.722 63.158 0.00 0.00 42.99 3.69
3247 5158 3.315470 CGACATAGATTTCTCTCGACCCA 59.685 47.826 0.00 0.00 32.66 4.51
3303 5214 1.067295 TCAAGAAGGATGGTGGCACT 58.933 50.000 18.45 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.