Multiple sequence alignment - TraesCS3D01G495900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G495900 chr3D 100.000 3993 0 0 1 3993 587907082 587903090 0.000000e+00 7374.0
1 TraesCS3D01G495900 chr3D 86.797 462 51 3 1800 2252 587874283 587873823 1.280000e-139 507.0
2 TraesCS3D01G495900 chr3D 93.651 63 4 0 2162 2224 587904826 587904764 1.180000e-15 95.3
3 TraesCS3D01G495900 chr3D 93.651 63 4 0 2257 2319 587904921 587904859 1.180000e-15 95.3
4 TraesCS3D01G495900 chr3D 89.552 67 6 1 924 990 114693417 114693352 2.560000e-12 84.2
5 TraesCS3D01G495900 chr3D 92.982 57 3 1 934 990 97567149 97567094 9.200000e-12 82.4
6 TraesCS3D01G495900 chr3A 94.540 1337 53 1 984 2320 717492919 717491603 0.000000e+00 2047.0
7 TraesCS3D01G495900 chr3A 92.509 534 33 6 2320 2852 717491190 717490663 0.000000e+00 758.0
8 TraesCS3D01G495900 chr3A 85.683 454 23 15 2870 3321 717490505 717490092 1.320000e-119 440.0
9 TraesCS3D01G495900 chr3A 88.889 189 20 1 203 391 717493387 717493200 8.630000e-57 231.0
10 TraesCS3D01G495900 chr3A 89.091 165 4 4 405 564 717493217 717493062 4.070000e-45 193.0
11 TraesCS3D01G495900 chr3A 82.178 202 30 4 2 198 717526281 717526081 6.860000e-38 169.0
12 TraesCS3D01G495900 chr3B 95.768 638 15 5 1 628 785312544 785311909 0.000000e+00 1018.0
13 TraesCS3D01G495900 chr3B 86.660 967 55 31 3038 3977 785306153 785305234 0.000000e+00 1003.0
14 TraesCS3D01G495900 chr3B 94.434 521 29 0 1441 1961 785308284 785307764 0.000000e+00 802.0
15 TraesCS3D01G495900 chr3B 91.667 576 41 6 2401 2975 785306748 785306179 0.000000e+00 791.0
16 TraesCS3D01G495900 chr3B 84.072 609 59 17 1443 2048 783414036 783414609 1.620000e-153 553.0
17 TraesCS3D01G495900 chr3B 96.084 332 12 1 1949 2279 785307746 785307415 1.260000e-149 540.0
18 TraesCS3D01G495900 chr3B 88.274 452 46 3 1805 2252 785303982 785303534 5.870000e-148 534.0
19 TraesCS3D01G495900 chr3B 94.224 277 16 0 984 1260 785311875 785311599 1.330000e-114 424.0
20 TraesCS3D01G495900 chr3B 83.375 397 34 19 1000 1364 783413488 783413884 4.940000e-89 339.0
21 TraesCS3D01G495900 chr3B 95.238 63 3 0 868 930 785311919 785311857 2.540000e-17 100.0
22 TraesCS3D01G495900 chr3B 94.231 52 3 0 1287 1338 785311602 785311551 3.310000e-11 80.5
23 TraesCS3D01G495900 chr4A 93.478 230 15 0 629 858 491720640 491720869 3.820000e-90 342.0
24 TraesCS3D01G495900 chr6B 93.023 215 14 1 628 841 236474409 236474623 3.000000e-81 313.0
25 TraesCS3D01G495900 chr2B 90.123 162 15 1 703 864 53663398 53663238 4.040000e-50 209.0
26 TraesCS3D01G495900 chr1D 91.935 124 9 1 627 750 339105097 339104975 5.310000e-39 172.0
27 TraesCS3D01G495900 chr1D 89.286 84 9 0 787 870 339104977 339104894 5.460000e-19 106.0
28 TraesCS3D01G495900 chr5D 95.082 61 3 0 930 990 456815260 456815320 3.280000e-16 97.1
29 TraesCS3D01G495900 chr2A 94.828 58 3 0 933 990 621027450 621027393 1.530000e-14 91.6
30 TraesCS3D01G495900 chr2A 94.444 54 2 1 932 984 20001282 20001335 9.200000e-12 82.4
31 TraesCS3D01G495900 chrUn 93.333 60 3 1 932 990 110475904 110475845 1.980000e-13 87.9
32 TraesCS3D01G495900 chr4B 94.643 56 3 0 935 990 495118314 495118259 1.980000e-13 87.9
33 TraesCS3D01G495900 chr7D 90.625 64 6 0 927 990 220964702 220964765 7.110000e-13 86.1
34 TraesCS3D01G495900 chr4D 90.625 64 4 2 929 990 95174520 95174457 2.560000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G495900 chr3D 587903090 587907082 3992 True 2521.533333 7374 95.767333 1 3993 3 chr3D.!!$R4 3992
1 TraesCS3D01G495900 chr3A 717490092 717493387 3295 True 733.800000 2047 90.142400 203 3321 5 chr3A.!!$R2 3118
2 TraesCS3D01G495900 chr3B 785303534 785312544 9010 True 588.055556 1018 92.953333 1 3977 9 chr3B.!!$R1 3976
3 TraesCS3D01G495900 chr3B 783413488 783414609 1121 False 446.000000 553 83.723500 1000 2048 2 chr3B.!!$F1 1048

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
757 818 0.034896 ATTTCGGTCGGCAGTTCAGT 59.965 50.0 0.0 0.0 0.00 3.41 F
1273 1357 0.036010 AGCTCCTGATTTGGGACACG 60.036 55.0 0.0 0.0 39.29 4.49 F
1434 4753 0.037590 TTTGTCATGCCGTAAGCCCT 59.962 50.0 0.0 0.0 42.71 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2124 5476 0.036732 AGGCGTTTCTGCTTCATCCA 59.963 50.0 0.00 0.00 34.52 3.41 R
2975 7444 0.461339 CATTAACCACGGTAGCGGCT 60.461 55.0 19.72 7.98 0.00 5.52 R
3351 7837 0.242825 CACGACGCTTAGGTTCCTCA 59.757 55.0 0.00 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 125 6.057533 TCAAGCAGTACCAATATCAATCAGG 58.942 40.000 0.00 0.00 0.00 3.86
578 633 1.495951 GTTGTGGATCGGCGAACAC 59.504 57.895 29.36 29.36 0.00 3.32
582 637 0.669318 GTGGATCGGCGAACACTTCA 60.669 55.000 29.01 12.03 0.00 3.02
599 654 0.107643 TCACTGCATCAAACGGTCCA 59.892 50.000 0.00 0.00 0.00 4.02
617 678 2.103143 CCGCACTCACTCTAGCCG 59.897 66.667 0.00 0.00 0.00 5.52
618 679 2.580867 CGCACTCACTCTAGCCGC 60.581 66.667 0.00 0.00 0.00 6.53
619 680 2.202810 GCACTCACTCTAGCCGCC 60.203 66.667 0.00 0.00 0.00 6.13
620 681 2.716017 GCACTCACTCTAGCCGCCT 61.716 63.158 0.00 0.00 0.00 5.52
621 682 1.435515 CACTCACTCTAGCCGCCTC 59.564 63.158 0.00 0.00 0.00 4.70
622 683 2.115911 ACTCACTCTAGCCGCCTCG 61.116 63.158 0.00 0.00 0.00 4.63
623 684 3.477224 CTCACTCTAGCCGCCTCGC 62.477 68.421 0.00 0.00 0.00 5.03
636 697 4.148825 CTCGCGCACTAAGGGGCT 62.149 66.667 8.75 0.00 43.79 5.19
637 698 4.451150 TCGCGCACTAAGGGGCTG 62.451 66.667 8.75 0.00 43.79 4.85
638 699 4.760047 CGCGCACTAAGGGGCTGT 62.760 66.667 8.75 0.00 43.79 4.40
639 700 2.359975 GCGCACTAAGGGGCTGTT 60.360 61.111 0.30 0.00 42.79 3.16
640 701 1.971695 GCGCACTAAGGGGCTGTTT 60.972 57.895 0.30 0.00 42.79 2.83
641 702 1.875963 CGCACTAAGGGGCTGTTTG 59.124 57.895 0.00 0.00 0.00 2.93
642 703 1.586154 CGCACTAAGGGGCTGTTTGG 61.586 60.000 0.00 0.00 0.00 3.28
643 704 0.251165 GCACTAAGGGGCTGTTTGGA 60.251 55.000 0.00 0.00 0.00 3.53
644 705 1.534729 CACTAAGGGGCTGTTTGGAC 58.465 55.000 0.00 0.00 0.00 4.02
645 706 0.036306 ACTAAGGGGCTGTTTGGACG 59.964 55.000 0.00 0.00 0.00 4.79
646 707 0.323629 CTAAGGGGCTGTTTGGACGA 59.676 55.000 0.00 0.00 0.00 4.20
647 708 0.988832 TAAGGGGCTGTTTGGACGAT 59.011 50.000 0.00 0.00 0.00 3.73
648 709 0.988832 AAGGGGCTGTTTGGACGATA 59.011 50.000 0.00 0.00 0.00 2.92
649 710 0.541863 AGGGGCTGTTTGGACGATAG 59.458 55.000 0.00 0.00 46.19 2.08
650 711 1.095807 GGGGCTGTTTGGACGATAGC 61.096 60.000 0.00 0.00 42.67 2.97
651 712 2.394604 GGCTGTTTGGACGATAGCC 58.605 57.895 0.00 0.00 46.04 3.93
652 713 1.095807 GGCTGTTTGGACGATAGCCC 61.096 60.000 0.00 0.00 46.29 5.19
657 718 3.536917 TGGACGATAGCCCAGCGG 61.537 66.667 0.00 0.00 46.76 5.52
669 730 3.053291 CAGCGGCGCCTTACCAAA 61.053 61.111 30.40 0.00 0.00 3.28
670 731 2.281900 AGCGGCGCCTTACCAAAA 60.282 55.556 30.40 0.00 0.00 2.44
671 732 1.677633 AGCGGCGCCTTACCAAAAT 60.678 52.632 30.40 1.94 0.00 1.82
672 733 1.214325 GCGGCGCCTTACCAAAATT 59.786 52.632 26.68 0.00 0.00 1.82
673 734 0.389296 GCGGCGCCTTACCAAAATTT 60.389 50.000 26.68 0.00 0.00 1.82
674 735 1.937562 GCGGCGCCTTACCAAAATTTT 60.938 47.619 26.68 0.00 0.00 1.82
675 736 1.724082 CGGCGCCTTACCAAAATTTTG 59.276 47.619 26.68 21.65 37.90 2.44
686 747 3.584095 CAAAATTTTGGCGTTGACCAC 57.416 42.857 21.00 0.00 40.19 4.16
687 748 3.194062 CAAAATTTTGGCGTTGACCACT 58.806 40.909 21.00 0.00 40.19 4.00
688 749 2.507339 AATTTTGGCGTTGACCACTG 57.493 45.000 0.00 0.00 40.19 3.66
689 750 0.673437 ATTTTGGCGTTGACCACTGG 59.327 50.000 0.00 0.00 40.19 4.00
690 751 2.010582 TTTTGGCGTTGACCACTGGC 62.011 55.000 0.00 0.00 40.19 4.85
691 752 2.902423 TTTGGCGTTGACCACTGGCT 62.902 55.000 0.00 0.00 40.19 4.75
692 753 2.594592 GGCGTTGACCACTGGCTT 60.595 61.111 0.00 0.00 0.00 4.35
693 754 2.639286 GCGTTGACCACTGGCTTG 59.361 61.111 0.00 0.00 0.00 4.01
694 755 2.908073 GCGTTGACCACTGGCTTGG 61.908 63.158 4.37 4.37 43.04 3.61
695 756 2.260869 CGTTGACCACTGGCTTGGG 61.261 63.158 10.03 0.00 41.49 4.12
696 757 2.203480 TTGACCACTGGCTTGGGC 60.203 61.111 10.03 7.53 46.30 5.36
697 758 2.766925 TTGACCACTGGCTTGGGCT 61.767 57.895 12.14 0.00 46.26 5.19
698 759 2.674380 GACCACTGGCTTGGGCTG 60.674 66.667 10.03 0.00 42.18 4.85
699 760 4.982701 ACCACTGGCTTGGGCTGC 62.983 66.667 10.03 0.00 41.49 5.25
705 766 4.362476 GGCTTGGGCTGCCGTTTG 62.362 66.667 13.40 4.00 41.03 2.93
706 767 4.362476 GCTTGGGCTGCCGTTTGG 62.362 66.667 13.40 2.20 35.12 3.28
707 768 2.597217 CTTGGGCTGCCGTTTGGA 60.597 61.111 13.40 0.00 37.49 3.53
708 769 1.978617 CTTGGGCTGCCGTTTGGAT 60.979 57.895 13.40 0.00 37.49 3.41
709 770 1.937546 CTTGGGCTGCCGTTTGGATC 61.938 60.000 13.40 0.00 37.49 3.36
710 771 2.361104 GGGCTGCCGTTTGGATCA 60.361 61.111 13.40 0.00 37.49 2.92
711 772 1.976474 GGGCTGCCGTTTGGATCAA 60.976 57.895 13.40 0.00 37.49 2.57
712 773 1.508088 GGCTGCCGTTTGGATCAAG 59.492 57.895 1.35 0.00 37.49 3.02
713 774 1.508088 GCTGCCGTTTGGATCAAGG 59.492 57.895 0.00 0.00 37.49 3.61
715 776 1.937546 CTGCCGTTTGGATCAAGGCC 61.938 60.000 0.00 0.00 46.67 5.19
716 777 1.976474 GCCGTTTGGATCAAGGCCA 60.976 57.895 5.01 0.00 41.81 5.36
717 778 1.531739 GCCGTTTGGATCAAGGCCAA 61.532 55.000 5.01 0.00 43.31 4.52
743 804 3.090952 TGGTTGTCTGCCAAAATTTCG 57.909 42.857 0.00 0.00 34.07 3.46
744 805 2.223923 TGGTTGTCTGCCAAAATTTCGG 60.224 45.455 0.00 0.00 34.07 4.30
745 806 2.223947 GGTTGTCTGCCAAAATTTCGGT 60.224 45.455 0.00 0.00 34.07 4.69
746 807 3.049912 GTTGTCTGCCAAAATTTCGGTC 58.950 45.455 0.00 0.00 34.07 4.79
747 808 1.265635 TGTCTGCCAAAATTTCGGTCG 59.734 47.619 0.00 0.00 0.00 4.79
748 809 0.878416 TCTGCCAAAATTTCGGTCGG 59.122 50.000 0.00 0.00 0.00 4.79
749 810 0.732538 CTGCCAAAATTTCGGTCGGC 60.733 55.000 0.00 3.28 40.02 5.54
750 811 1.287503 GCCAAAATTTCGGTCGGCA 59.712 52.632 0.00 0.00 39.38 5.69
751 812 0.732538 GCCAAAATTTCGGTCGGCAG 60.733 55.000 0.00 0.00 39.38 4.85
752 813 0.596082 CCAAAATTTCGGTCGGCAGT 59.404 50.000 0.00 0.00 0.00 4.40
753 814 1.000717 CCAAAATTTCGGTCGGCAGTT 60.001 47.619 0.00 0.00 0.00 3.16
754 815 2.315901 CAAAATTTCGGTCGGCAGTTC 58.684 47.619 0.00 0.00 0.00 3.01
755 816 1.600023 AAATTTCGGTCGGCAGTTCA 58.400 45.000 0.00 0.00 0.00 3.18
756 817 1.156736 AATTTCGGTCGGCAGTTCAG 58.843 50.000 0.00 0.00 0.00 3.02
757 818 0.034896 ATTTCGGTCGGCAGTTCAGT 59.965 50.000 0.00 0.00 0.00 3.41
758 819 0.179067 TTTCGGTCGGCAGTTCAGTT 60.179 50.000 0.00 0.00 0.00 3.16
759 820 0.179067 TTCGGTCGGCAGTTCAGTTT 60.179 50.000 0.00 0.00 0.00 2.66
760 821 0.179067 TCGGTCGGCAGTTCAGTTTT 60.179 50.000 0.00 0.00 0.00 2.43
761 822 0.234884 CGGTCGGCAGTTCAGTTTTC 59.765 55.000 0.00 0.00 0.00 2.29
762 823 1.305201 GGTCGGCAGTTCAGTTTTCA 58.695 50.000 0.00 0.00 0.00 2.69
763 824 1.002792 GGTCGGCAGTTCAGTTTTCAC 60.003 52.381 0.00 0.00 0.00 3.18
764 825 0.934496 TCGGCAGTTCAGTTTTCACG 59.066 50.000 0.00 0.00 0.00 4.35
765 826 0.657368 CGGCAGTTCAGTTTTCACGC 60.657 55.000 0.00 0.00 0.00 5.34
766 827 0.317854 GGCAGTTCAGTTTTCACGCC 60.318 55.000 0.00 0.00 0.00 5.68
767 828 0.317854 GCAGTTCAGTTTTCACGCCC 60.318 55.000 0.00 0.00 0.00 6.13
768 829 0.041312 CAGTTCAGTTTTCACGCCCG 60.041 55.000 0.00 0.00 0.00 6.13
769 830 1.370051 GTTCAGTTTTCACGCCCGC 60.370 57.895 0.00 0.00 0.00 6.13
770 831 2.887889 TTCAGTTTTCACGCCCGCG 61.888 57.895 7.69 7.69 46.03 6.46
800 861 4.856801 AGCGGCGGCGGATTTCAT 62.857 61.111 33.02 3.06 46.35 2.57
801 862 4.313675 GCGGCGGCGGATTTCATC 62.314 66.667 33.02 9.65 0.00 2.92
802 863 4.000557 CGGCGGCGGATTTCATCG 62.001 66.667 25.36 0.00 0.00 3.84
808 869 3.712020 GCGGATTTCATCGCCAAAA 57.288 47.368 0.00 0.00 45.42 2.44
809 870 2.208326 GCGGATTTCATCGCCAAAAT 57.792 45.000 0.00 0.00 45.42 1.82
810 871 3.347958 GCGGATTTCATCGCCAAAATA 57.652 42.857 0.00 0.00 45.42 1.40
811 872 3.900941 GCGGATTTCATCGCCAAAATAT 58.099 40.909 0.00 0.00 45.42 1.28
812 873 4.298332 GCGGATTTCATCGCCAAAATATT 58.702 39.130 0.00 0.00 45.42 1.28
813 874 4.148696 GCGGATTTCATCGCCAAAATATTG 59.851 41.667 0.00 0.00 45.42 1.90
821 882 4.802424 CAAAATATTGGCGCGCCA 57.198 50.000 46.88 46.88 45.63 5.69
836 897 2.042741 CCATGGATTGGCAGGGCA 60.043 61.111 5.56 0.00 39.09 5.36
837 898 1.458777 CCATGGATTGGCAGGGCAT 60.459 57.895 5.56 0.00 39.09 4.40
838 899 1.745890 CATGGATTGGCAGGGCATG 59.254 57.895 0.00 0.00 0.00 4.06
839 900 1.046472 CATGGATTGGCAGGGCATGT 61.046 55.000 0.00 0.00 0.00 3.21
840 901 1.046472 ATGGATTGGCAGGGCATGTG 61.046 55.000 0.00 0.00 0.00 3.21
841 902 2.497770 GATTGGCAGGGCATGTGC 59.502 61.111 0.00 0.00 40.42 4.57
842 903 3.420214 GATTGGCAGGGCATGTGCG 62.420 63.158 0.00 0.00 42.19 5.34
851 912 4.241999 GCATGTGCGGGCGTCATC 62.242 66.667 0.00 0.00 0.00 2.92
852 913 3.576356 CATGTGCGGGCGTCATCC 61.576 66.667 0.00 0.00 0.00 3.51
853 914 4.094646 ATGTGCGGGCGTCATCCA 62.095 61.111 0.00 0.00 0.00 3.41
854 915 3.620419 ATGTGCGGGCGTCATCCAA 62.620 57.895 0.00 0.00 0.00 3.53
855 916 3.053291 GTGCGGGCGTCATCCAAA 61.053 61.111 0.00 0.00 0.00 3.28
856 917 3.053291 TGCGGGCGTCATCCAAAC 61.053 61.111 0.00 0.00 0.00 2.93
857 918 3.053291 GCGGGCGTCATCCAAACA 61.053 61.111 0.00 0.00 0.00 2.83
858 919 2.622011 GCGGGCGTCATCCAAACAA 61.622 57.895 0.00 0.00 0.00 2.83
859 920 1.209127 CGGGCGTCATCCAAACAAC 59.791 57.895 0.00 0.00 0.00 3.32
860 921 1.584495 GGGCGTCATCCAAACAACC 59.416 57.895 0.00 0.00 0.00 3.77
861 922 1.584495 GGCGTCATCCAAACAACCC 59.416 57.895 0.00 0.00 0.00 4.11
862 923 1.584495 GCGTCATCCAAACAACCCC 59.416 57.895 0.00 0.00 0.00 4.95
863 924 0.893727 GCGTCATCCAAACAACCCCT 60.894 55.000 0.00 0.00 0.00 4.79
864 925 1.612199 GCGTCATCCAAACAACCCCTA 60.612 52.381 0.00 0.00 0.00 3.53
865 926 2.785562 CGTCATCCAAACAACCCCTAA 58.214 47.619 0.00 0.00 0.00 2.69
866 927 3.352648 CGTCATCCAAACAACCCCTAAT 58.647 45.455 0.00 0.00 0.00 1.73
867 928 3.377172 CGTCATCCAAACAACCCCTAATC 59.623 47.826 0.00 0.00 0.00 1.75
868 929 3.699538 GTCATCCAAACAACCCCTAATCC 59.300 47.826 0.00 0.00 0.00 3.01
872 933 2.583566 CCAAACAACCCCTAATCCCCTA 59.416 50.000 0.00 0.00 0.00 3.53
909 970 1.106944 CGGAGAAGAGAGGAGGAGCC 61.107 65.000 0.00 0.00 0.00 4.70
930 991 3.224324 GCGTCAGGGCCGGAGATA 61.224 66.667 5.05 0.00 0.00 1.98
931 992 2.574955 GCGTCAGGGCCGGAGATAT 61.575 63.158 5.05 0.00 0.00 1.63
932 993 2.050269 CGTCAGGGCCGGAGATATT 58.950 57.895 5.05 0.00 0.00 1.28
933 994 0.393077 CGTCAGGGCCGGAGATATTT 59.607 55.000 5.05 0.00 0.00 1.40
934 995 1.202651 CGTCAGGGCCGGAGATATTTT 60.203 52.381 5.05 0.00 0.00 1.82
935 996 2.745152 CGTCAGGGCCGGAGATATTTTT 60.745 50.000 5.05 0.00 0.00 1.94
982 1043 8.603242 AATATCGTGAAGATACCAATTACACC 57.397 34.615 0.00 0.00 43.93 4.16
983 1044 4.761975 TCGTGAAGATACCAATTACACCC 58.238 43.478 0.00 0.00 0.00 4.61
984 1045 3.554324 CGTGAAGATACCAATTACACCCG 59.446 47.826 0.00 0.00 0.00 5.28
985 1046 3.875134 GTGAAGATACCAATTACACCCGG 59.125 47.826 0.00 0.00 0.00 5.73
986 1047 2.632987 AGATACCAATTACACCCGGC 57.367 50.000 0.00 0.00 0.00 6.13
987 1048 1.142262 AGATACCAATTACACCCGGCC 59.858 52.381 0.00 0.00 0.00 6.13
1024 1085 2.549329 TCGCTCTACAACTTCACGTACA 59.451 45.455 0.00 0.00 0.00 2.90
1055 1116 1.530013 GACTCAGGTCCGTTCCCGAA 61.530 60.000 0.00 0.00 36.53 4.30
1256 1340 3.558099 GACAACAAGCCCGCCAAGC 62.558 63.158 0.00 0.00 0.00 4.01
1257 1341 3.297620 CAACAAGCCCGCCAAGCT 61.298 61.111 0.00 0.00 44.19 3.74
1258 1342 2.985847 AACAAGCCCGCCAAGCTC 60.986 61.111 0.00 0.00 40.49 4.09
1260 1344 4.729918 CAAGCCCGCCAAGCTCCT 62.730 66.667 0.00 0.00 40.49 3.69
1261 1345 4.729918 AAGCCCGCCAAGCTCCTG 62.730 66.667 0.00 0.00 40.49 3.86
1263 1347 4.496336 GCCCGCCAAGCTCCTGAT 62.496 66.667 0.00 0.00 0.00 2.90
1264 1348 2.273449 CCCGCCAAGCTCCTGATT 59.727 61.111 0.00 0.00 0.00 2.57
1265 1349 1.379044 CCCGCCAAGCTCCTGATTT 60.379 57.895 0.00 0.00 0.00 2.17
1266 1350 1.660560 CCCGCCAAGCTCCTGATTTG 61.661 60.000 0.00 0.00 0.00 2.32
1267 1351 1.660560 CCGCCAAGCTCCTGATTTGG 61.661 60.000 0.00 0.00 43.31 3.28
1268 1352 1.660560 CGCCAAGCTCCTGATTTGGG 61.661 60.000 4.82 0.00 41.28 4.12
1269 1353 0.323725 GCCAAGCTCCTGATTTGGGA 60.324 55.000 4.82 0.00 41.28 4.37
1270 1354 1.467920 CCAAGCTCCTGATTTGGGAC 58.532 55.000 0.00 0.00 38.12 4.46
1271 1355 1.272092 CCAAGCTCCTGATTTGGGACA 60.272 52.381 0.00 0.00 38.12 4.02
1272 1356 1.815003 CAAGCTCCTGATTTGGGACAC 59.185 52.381 0.00 0.00 39.29 3.67
1273 1357 0.036010 AGCTCCTGATTTGGGACACG 60.036 55.000 0.00 0.00 39.29 4.49
1274 1358 1.026718 GCTCCTGATTTGGGACACGG 61.027 60.000 0.00 0.00 39.29 4.94
1275 1359 0.324943 CTCCTGATTTGGGACACGGT 59.675 55.000 0.00 0.00 39.29 4.83
1276 1360 1.553248 CTCCTGATTTGGGACACGGTA 59.447 52.381 0.00 0.00 39.29 4.02
1277 1361 1.276989 TCCTGATTTGGGACACGGTAC 59.723 52.381 0.00 0.00 39.29 3.34
1278 1362 1.278127 CCTGATTTGGGACACGGTACT 59.722 52.381 0.00 0.00 39.29 2.73
1279 1363 2.618053 CTGATTTGGGACACGGTACTC 58.382 52.381 0.00 0.00 39.29 2.59
1280 1364 2.233922 CTGATTTGGGACACGGTACTCT 59.766 50.000 0.00 0.00 39.29 3.24
1281 1365 2.635915 TGATTTGGGACACGGTACTCTT 59.364 45.455 0.00 0.00 39.29 2.85
1282 1366 3.071892 TGATTTGGGACACGGTACTCTTT 59.928 43.478 0.00 0.00 39.29 2.52
1283 1367 2.825861 TTGGGACACGGTACTCTTTC 57.174 50.000 0.00 0.00 39.29 2.62
1284 1368 0.971386 TGGGACACGGTACTCTTTCC 59.029 55.000 0.00 0.00 0.00 3.13
1285 1369 1.264295 GGGACACGGTACTCTTTCCT 58.736 55.000 0.00 0.00 0.00 3.36
1324 1443 1.089920 AGAAATTACTGCCAGCTGCG 58.910 50.000 8.66 2.70 45.60 5.18
1325 1448 0.524180 GAAATTACTGCCAGCTGCGC 60.524 55.000 17.27 17.27 45.60 6.09
1346 4570 4.672409 GCATGAAACTATTAGTGTTGCCC 58.328 43.478 0.00 0.00 0.00 5.36
1348 4572 5.677091 GCATGAAACTATTAGTGTTGCCCAG 60.677 44.000 0.00 0.00 0.00 4.45
1367 4596 0.171231 GCCCTGCTTCGAAATTGGAC 59.829 55.000 0.00 0.00 0.00 4.02
1371 4600 1.226018 GCTTCGAAATTGGACGCGG 60.226 57.895 12.47 0.00 0.00 6.46
1426 4745 0.950836 TCCACAAGTTTGTCATGCCG 59.049 50.000 0.00 0.00 39.91 5.69
1428 4747 1.876799 CCACAAGTTTGTCATGCCGTA 59.123 47.619 0.00 0.00 39.91 4.02
1430 4749 3.554524 CACAAGTTTGTCATGCCGTAAG 58.445 45.455 0.00 0.00 39.91 2.34
1432 4751 1.165270 AGTTTGTCATGCCGTAAGCC 58.835 50.000 0.00 0.00 42.71 4.35
1433 4752 0.170339 GTTTGTCATGCCGTAAGCCC 59.830 55.000 0.00 0.00 42.71 5.19
1434 4753 0.037590 TTTGTCATGCCGTAAGCCCT 59.962 50.000 0.00 0.00 42.71 5.19
1435 4754 0.906066 TTGTCATGCCGTAAGCCCTA 59.094 50.000 0.00 0.00 42.71 3.53
1436 4755 0.464036 TGTCATGCCGTAAGCCCTAG 59.536 55.000 0.00 0.00 42.71 3.02
1437 4756 0.464452 GTCATGCCGTAAGCCCTAGT 59.536 55.000 0.00 0.00 42.71 2.57
1438 4757 0.464036 TCATGCCGTAAGCCCTAGTG 59.536 55.000 0.00 0.00 42.71 2.74
1439 4758 0.178068 CATGCCGTAAGCCCTAGTGT 59.822 55.000 0.00 0.00 42.71 3.55
1665 4984 9.290988 TGAACTTTAATTATCCTGCTGTTTGTA 57.709 29.630 0.00 0.00 0.00 2.41
1705 5024 5.310857 ACATTCAGGAGGGAGACTTTTAACT 59.689 40.000 0.00 0.00 0.00 2.24
1909 5228 3.568007 TGTGGAGGTAATGCTTGTTTGAC 59.432 43.478 0.00 0.00 0.00 3.18
2124 5476 8.818622 AAAGTTTTACCACCTAAGTTTCTCTT 57.181 30.769 0.00 0.00 39.89 2.85
2149 5501 1.464997 GAAGCAGAAACGCCTTTCGAT 59.535 47.619 3.04 0.00 40.79 3.59
2167 5519 7.907045 CCTTTCGATTGATTCAAGACTGTTATG 59.093 37.037 5.21 0.00 0.00 1.90
2235 5587 9.214957 CCAGTTTCTGATGTATGTTTTACTACA 57.785 33.333 0.00 0.00 32.44 2.74
2313 5665 4.039973 ACCACGATTTCAGTCCAGTTTCTA 59.960 41.667 0.00 0.00 0.00 2.10
2342 6395 7.365840 ACAGAATTCTGAAAACGTAGGAATC 57.634 36.000 36.15 0.00 46.59 2.52
2398 6451 2.843701 AGAGTGCTGGTCAAAGAACTG 58.156 47.619 0.00 0.00 36.09 3.16
2406 6733 4.498177 GCTGGTCAAAGAACTGGAAAACTC 60.498 45.833 0.00 0.00 0.00 3.01
2453 6780 7.220740 TGAGTGTTTGGTTCACATGTATAGAA 58.779 34.615 0.00 0.00 38.16 2.10
2464 6791 5.352293 TCACATGTATAGAAAAGCAGCACAG 59.648 40.000 0.00 0.00 0.00 3.66
2470 6797 5.772825 ATAGAAAAGCAGCACAGTCAAAA 57.227 34.783 0.00 0.00 0.00 2.44
2482 6809 7.008992 GCAGCACAGTCAAAAGATATGATTTTC 59.991 37.037 0.00 0.00 0.00 2.29
2562 6889 9.248291 GAAATCTAACAGAGATCTGAGTGAATC 57.752 37.037 16.52 9.23 44.68 2.52
2596 6923 4.915667 TGTGTTCTTTAACTGAGATCGACG 59.084 41.667 0.00 0.00 36.51 5.12
2597 6924 4.323868 GTGTTCTTTAACTGAGATCGACGG 59.676 45.833 0.00 0.00 36.51 4.79
2598 6925 4.216902 TGTTCTTTAACTGAGATCGACGGA 59.783 41.667 8.37 0.00 36.51 4.69
2601 6928 5.962433 TCTTTAACTGAGATCGACGGAAAT 58.038 37.500 8.37 0.00 0.00 2.17
2619 6947 5.928264 CGGAAATTTTCTGCTCCATTTCTTT 59.072 36.000 8.93 0.00 36.35 2.52
2622 6950 9.271828 GGAAATTTTCTGCTCCATTTCTTTAAA 57.728 29.630 8.93 0.00 36.35 1.52
2739 7068 4.085210 GCTATAATAACAGCGAACACGGTC 60.085 45.833 0.00 0.00 35.59 4.79
2746 7075 2.728435 GCGAACACGGTCCCCCTAT 61.728 63.158 0.00 0.00 0.00 2.57
2747 7076 1.394266 GCGAACACGGTCCCCCTATA 61.394 60.000 0.00 0.00 0.00 1.31
2794 7123 3.249799 TGTTTGCCTGATGAACTGTTACG 59.750 43.478 0.00 0.00 0.00 3.18
2796 7125 3.945981 TGCCTGATGAACTGTTACGTA 57.054 42.857 0.00 0.00 0.00 3.57
2873 7342 3.181458 TGGAGTGTTGTCAACCCTAAGAC 60.181 47.826 13.13 3.64 35.37 3.01
2930 7399 4.787598 CTGATTCAAAGTTGGCTACACAC 58.212 43.478 1.24 0.00 0.00 3.82
2932 7401 4.275689 TGATTCAAAGTTGGCTACACACTG 59.724 41.667 1.24 0.00 0.00 3.66
2969 7438 2.948720 GCTGGTGCCTCGTCTTCCT 61.949 63.158 0.00 0.00 0.00 3.36
2975 7444 2.029623 GTGCCTCGTCTTCCTATGGTA 58.970 52.381 0.00 0.00 0.00 3.25
2976 7445 2.034812 GTGCCTCGTCTTCCTATGGTAG 59.965 54.545 0.00 0.00 0.00 3.18
2977 7446 1.000052 GCCTCGTCTTCCTATGGTAGC 60.000 57.143 0.00 0.00 0.00 3.58
2978 7447 1.614413 CCTCGTCTTCCTATGGTAGCC 59.386 57.143 0.00 0.00 0.00 3.93
2979 7448 1.267261 CTCGTCTTCCTATGGTAGCCG 59.733 57.143 0.00 0.00 0.00 5.52
2980 7449 0.318784 CGTCTTCCTATGGTAGCCGC 60.319 60.000 0.00 0.00 0.00 6.53
2981 7450 1.041437 GTCTTCCTATGGTAGCCGCT 58.959 55.000 0.00 0.00 0.00 5.52
2982 7451 2.236766 GTCTTCCTATGGTAGCCGCTA 58.763 52.381 0.00 0.00 0.00 4.26
2983 7452 2.030096 GTCTTCCTATGGTAGCCGCTAC 60.030 54.545 20.46 20.46 36.33 3.58
2989 7458 3.455469 GGTAGCCGCTACCGTGGT 61.455 66.667 29.42 0.00 45.49 4.16
3008 7477 5.682422 CGTGGTTAATGTATTGATGTGCATG 59.318 40.000 0.00 0.00 0.00 4.06
3019 7488 3.887741 TGATGTGCATGAAAACTTGTCG 58.112 40.909 0.00 0.00 0.00 4.35
3020 7489 3.314913 TGATGTGCATGAAAACTTGTCGT 59.685 39.130 0.00 0.00 0.00 4.34
3021 7490 3.063670 TGTGCATGAAAACTTGTCGTG 57.936 42.857 0.00 0.00 35.49 4.35
3023 7492 1.044725 GCATGAAAACTTGTCGTGCG 58.955 50.000 9.89 0.00 45.31 5.34
3024 7493 1.333702 GCATGAAAACTTGTCGTGCGA 60.334 47.619 9.89 0.00 45.31 5.10
3025 7494 2.298300 CATGAAAACTTGTCGTGCGAC 58.702 47.619 16.69 16.69 44.77 5.19
3035 7504 1.334054 GTCGTGCGACACTATTTCGT 58.666 50.000 18.32 0.00 44.02 3.85
3036 7505 1.057285 GTCGTGCGACACTATTTCGTG 59.943 52.381 18.32 0.00 44.02 4.35
3121 7590 9.173021 CCACAAATTGTATCCTTTAGTATGTGA 57.827 33.333 0.00 0.00 36.33 3.58
3175 7644 6.204108 TCCTCGTGTCCTTTTCATTTAAAGTC 59.796 38.462 0.00 0.00 34.11 3.01
3193 7662 5.733620 AAGTCGTTAACCACCTAATCAGA 57.266 39.130 0.00 0.00 0.00 3.27
3194 7663 5.934402 AGTCGTTAACCACCTAATCAGAT 57.066 39.130 0.00 0.00 0.00 2.90
3195 7664 6.295719 AGTCGTTAACCACCTAATCAGATT 57.704 37.500 0.20 0.20 0.00 2.40
3238 7708 6.213600 AGTCTTTAGGTATTTCTCAAGGCTCA 59.786 38.462 0.00 0.00 29.90 4.26
3245 7715 7.278875 AGGTATTTCTCAAGGCTCATCTTAAG 58.721 38.462 0.00 0.00 0.00 1.85
3264 7734 3.151912 AGTCCTTCAGCAAAGCAATCT 57.848 42.857 0.00 0.00 33.29 2.40
3284 7754 9.962759 GCAATCTTATTAACTTTGCATTTTGAG 57.037 29.630 11.15 0.00 41.67 3.02
3362 7848 7.450014 TGCATTAATTGTCTTTGAGGAACCTAA 59.550 33.333 0.00 0.00 0.00 2.69
3364 7850 5.966742 AATTGTCTTTGAGGAACCTAAGC 57.033 39.130 0.00 0.00 0.00 3.09
3368 7854 1.993370 CTTTGAGGAACCTAAGCGTCG 59.007 52.381 0.00 0.00 0.00 5.12
3369 7855 0.963962 TTGAGGAACCTAAGCGTCGT 59.036 50.000 0.00 0.00 0.00 4.34
3370 7856 0.242825 TGAGGAACCTAAGCGTCGTG 59.757 55.000 0.00 0.00 0.00 4.35
3416 7902 0.993470 ATGGGGCCAAATTTGTGCAT 59.007 45.000 23.93 12.42 0.00 3.96
3417 7903 0.036448 TGGGGCCAAATTTGTGCATG 59.964 50.000 23.93 9.55 0.00 4.06
3432 7918 7.658179 TTTGTGCATGTTTGTTCTTTTGTAA 57.342 28.000 0.00 0.00 0.00 2.41
3486 7976 1.682849 CACCCCACGAATTCCTCCA 59.317 57.895 0.00 0.00 0.00 3.86
3497 7987 0.259938 ATTCCTCCATGGCACCTTCC 59.740 55.000 6.96 0.00 35.26 3.46
3498 7988 0.846427 TTCCTCCATGGCACCTTCCT 60.846 55.000 6.96 0.00 35.26 3.36
3499 7989 1.225704 CCTCCATGGCACCTTCCTC 59.774 63.158 6.96 0.00 0.00 3.71
3500 7990 1.277580 CCTCCATGGCACCTTCCTCT 61.278 60.000 6.96 0.00 0.00 3.69
3501 7991 0.107312 CTCCATGGCACCTTCCTCTG 60.107 60.000 6.96 0.00 0.00 3.35
3502 7992 0.842030 TCCATGGCACCTTCCTCTGT 60.842 55.000 6.96 0.00 0.00 3.41
3503 7993 0.679002 CCATGGCACCTTCCTCTGTG 60.679 60.000 0.00 0.00 35.58 3.66
3504 7994 0.037303 CATGGCACCTTCCTCTGTGT 59.963 55.000 0.00 0.00 34.94 3.72
3505 7995 0.037303 ATGGCACCTTCCTCTGTGTG 59.963 55.000 0.00 0.00 34.94 3.82
3506 7996 1.302832 GGCACCTTCCTCTGTGTGG 60.303 63.158 0.00 0.00 34.94 4.17
3507 7997 1.451936 GCACCTTCCTCTGTGTGGT 59.548 57.895 0.00 0.00 34.94 4.16
3508 7998 0.179018 GCACCTTCCTCTGTGTGGTT 60.179 55.000 0.00 0.00 34.94 3.67
3509 7999 1.750682 GCACCTTCCTCTGTGTGGTTT 60.751 52.381 0.00 0.00 34.94 3.27
3510 8000 2.654863 CACCTTCCTCTGTGTGGTTTT 58.345 47.619 0.00 0.00 0.00 2.43
3511 8001 2.358898 CACCTTCCTCTGTGTGGTTTTG 59.641 50.000 0.00 0.00 0.00 2.44
3512 8002 1.338020 CCTTCCTCTGTGTGGTTTTGC 59.662 52.381 0.00 0.00 0.00 3.68
3513 8003 2.301346 CTTCCTCTGTGTGGTTTTGCT 58.699 47.619 0.00 0.00 0.00 3.91
3514 8004 1.967319 TCCTCTGTGTGGTTTTGCTC 58.033 50.000 0.00 0.00 0.00 4.26
3515 8005 0.954452 CCTCTGTGTGGTTTTGCTCC 59.046 55.000 0.00 0.00 0.00 4.70
3516 8006 1.477558 CCTCTGTGTGGTTTTGCTCCT 60.478 52.381 0.00 0.00 0.00 3.69
3517 8007 2.301346 CTCTGTGTGGTTTTGCTCCTT 58.699 47.619 0.00 0.00 0.00 3.36
3518 8008 2.291741 CTCTGTGTGGTTTTGCTCCTTC 59.708 50.000 0.00 0.00 0.00 3.46
3519 8009 2.092429 TCTGTGTGGTTTTGCTCCTTCT 60.092 45.455 0.00 0.00 0.00 2.85
3520 8010 2.291741 CTGTGTGGTTTTGCTCCTTCTC 59.708 50.000 0.00 0.00 0.00 2.87
3521 8011 2.092429 TGTGTGGTTTTGCTCCTTCTCT 60.092 45.455 0.00 0.00 0.00 3.10
3531 8021 5.559148 TTGCTCCTTCTCTTCTTCTTTCT 57.441 39.130 0.00 0.00 0.00 2.52
3532 8022 5.559148 TGCTCCTTCTCTTCTTCTTTCTT 57.441 39.130 0.00 0.00 0.00 2.52
3536 8026 6.295632 GCTCCTTCTCTTCTTCTTTCTTACCT 60.296 42.308 0.00 0.00 0.00 3.08
3538 8028 6.555360 TCCTTCTCTTCTTCTTTCTTACCTGT 59.445 38.462 0.00 0.00 0.00 4.00
3552 8042 5.686753 TCTTACCTGTTGGAGCAAAACTTA 58.313 37.500 0.00 0.00 37.04 2.24
3592 8082 5.924356 TGTCAAACTCCTATGTTGACTTCA 58.076 37.500 14.71 0.00 33.47 3.02
3602 8092 6.152323 TCCTATGTTGACTTCACCACTAGTAC 59.848 42.308 0.00 0.00 0.00 2.73
3604 8094 4.220724 TGTTGACTTCACCACTAGTACCT 58.779 43.478 0.00 0.00 0.00 3.08
3610 8100 3.170991 TCACCACTAGTACCTGCTTCT 57.829 47.619 0.00 0.00 0.00 2.85
3613 8103 4.017808 CACCACTAGTACCTGCTTCTACT 58.982 47.826 0.00 0.00 0.00 2.57
3619 8109 5.952947 ACTAGTACCTGCTTCTACTGTGAAT 59.047 40.000 0.00 0.00 0.00 2.57
3623 8115 2.237143 CCTGCTTCTACTGTGAATGGGA 59.763 50.000 0.00 0.00 0.00 4.37
3631 8123 7.363268 GCTTCTACTGTGAATGGGAAATGATTT 60.363 37.037 0.00 0.00 0.00 2.17
3708 8200 1.061131 CGCGCTCACCTACAAAGATTG 59.939 52.381 5.56 0.00 0.00 2.67
3739 8231 2.640332 TGTCAGCCCAATAACTGGTACA 59.360 45.455 0.00 0.00 44.76 2.90
3740 8232 3.073209 TGTCAGCCCAATAACTGGTACAA 59.927 43.478 0.00 0.00 44.76 2.41
3744 8236 2.159435 GCCCAATAACTGGTACAAAGCG 60.159 50.000 0.00 0.00 44.76 4.68
3790 8282 2.036387 TCCACGGAACTTTCTGTCTGA 58.964 47.619 0.16 0.00 44.62 3.27
3799 8292 6.458206 CGGAACTTTCTGTCTGATTTGAACAA 60.458 38.462 0.00 0.00 0.00 2.83
3817 8310 5.009210 TGAACAATTTTGGGAAGGTTCTACG 59.991 40.000 0.00 0.00 36.50 3.51
3818 8311 4.466827 ACAATTTTGGGAAGGTTCTACGT 58.533 39.130 0.00 0.00 0.00 3.57
3894 8387 9.634021 TTATGCCTTTTTATTTTTGGTTTTCCT 57.366 25.926 0.00 0.00 41.38 3.36
3895 8388 7.946381 TGCCTTTTTATTTTTGGTTTTCCTT 57.054 28.000 0.00 0.00 41.38 3.36
3897 8390 8.246871 TGCCTTTTTATTTTTGGTTTTCCTTTG 58.753 29.630 0.00 0.00 41.38 2.77
3898 8391 7.221838 GCCTTTTTATTTTTGGTTTTCCTTTGC 59.778 33.333 0.00 0.00 41.38 3.68
3900 8393 9.853555 CTTTTTATTTTTGGTTTTCCTTTGCTT 57.146 25.926 0.00 0.00 41.38 3.91
3902 8395 9.847706 TTTTATTTTTGGTTTTCCTTTGCTTTC 57.152 25.926 0.00 0.00 41.38 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 5.704053 TGCTATGATTCAAGTGCCTGATATG 59.296 40.000 0.00 0.00 0.00 1.78
13 14 5.872963 TGCTATGATTCAAGTGCCTGATAT 58.127 37.500 0.00 0.00 0.00 1.63
124 125 1.026718 GTCCTGTGTGTATGCTGCCC 61.027 60.000 0.00 0.00 0.00 5.36
192 193 3.074999 GCGCCTCACCTCCTCTCTG 62.075 68.421 0.00 0.00 0.00 3.35
578 633 1.197721 GGACCGTTTGATGCAGTGAAG 59.802 52.381 0.00 0.00 0.00 3.02
582 637 0.889186 GGTGGACCGTTTGATGCAGT 60.889 55.000 0.00 0.00 0.00 4.40
599 654 2.701780 CGGCTAGAGTGAGTGCGGT 61.702 63.158 0.00 0.00 0.00 5.68
619 680 4.148825 AGCCCCTTAGTGCGCGAG 62.149 66.667 12.10 0.00 0.00 5.03
620 681 4.451150 CAGCCCCTTAGTGCGCGA 62.451 66.667 12.10 0.00 0.00 5.87
621 682 4.760047 ACAGCCCCTTAGTGCGCG 62.760 66.667 0.00 0.00 0.00 6.86
622 683 1.971695 AAACAGCCCCTTAGTGCGC 60.972 57.895 0.00 0.00 0.00 6.09
623 684 1.586154 CCAAACAGCCCCTTAGTGCG 61.586 60.000 0.00 0.00 0.00 5.34
624 685 0.251165 TCCAAACAGCCCCTTAGTGC 60.251 55.000 0.00 0.00 0.00 4.40
625 686 1.534729 GTCCAAACAGCCCCTTAGTG 58.465 55.000 0.00 0.00 0.00 2.74
626 687 0.036306 CGTCCAAACAGCCCCTTAGT 59.964 55.000 0.00 0.00 0.00 2.24
627 688 0.323629 TCGTCCAAACAGCCCCTTAG 59.676 55.000 0.00 0.00 0.00 2.18
628 689 0.988832 ATCGTCCAAACAGCCCCTTA 59.011 50.000 0.00 0.00 0.00 2.69
629 690 0.988832 TATCGTCCAAACAGCCCCTT 59.011 50.000 0.00 0.00 0.00 3.95
630 691 0.541863 CTATCGTCCAAACAGCCCCT 59.458 55.000 0.00 0.00 0.00 4.79
631 692 1.095807 GCTATCGTCCAAACAGCCCC 61.096 60.000 0.00 0.00 0.00 5.80
632 693 1.095807 GGCTATCGTCCAAACAGCCC 61.096 60.000 0.00 0.00 44.93 5.19
633 694 2.394604 GGCTATCGTCCAAACAGCC 58.605 57.895 0.00 0.00 44.54 4.85
634 695 0.392461 TGGGCTATCGTCCAAACAGC 60.392 55.000 0.00 0.00 43.26 4.40
635 696 1.656652 CTGGGCTATCGTCCAAACAG 58.343 55.000 0.00 0.00 46.05 3.16
636 697 0.392461 GCTGGGCTATCGTCCAAACA 60.392 55.000 0.00 0.00 46.05 2.83
637 698 1.429148 CGCTGGGCTATCGTCCAAAC 61.429 60.000 0.00 0.00 46.05 2.93
638 699 1.153449 CGCTGGGCTATCGTCCAAA 60.153 57.895 0.00 0.00 46.05 3.28
639 700 2.499205 CGCTGGGCTATCGTCCAA 59.501 61.111 0.00 0.00 46.05 3.53
640 701 3.536917 CCGCTGGGCTATCGTCCA 61.537 66.667 0.00 0.00 44.23 4.02
652 713 1.933115 ATTTTGGTAAGGCGCCGCTG 61.933 55.000 23.20 0.00 0.00 5.18
653 714 1.248101 AATTTTGGTAAGGCGCCGCT 61.248 50.000 23.20 15.43 0.00 5.52
654 715 0.389296 AAATTTTGGTAAGGCGCCGC 60.389 50.000 23.20 15.40 0.00 6.53
655 716 1.724082 CAAAATTTTGGTAAGGCGCCG 59.276 47.619 23.20 0.00 34.59 6.46
666 727 3.001127 CAGTGGTCAACGCCAAAATTTTG 59.999 43.478 21.65 21.65 40.68 2.44
667 728 3.194062 CAGTGGTCAACGCCAAAATTTT 58.806 40.909 0.00 0.00 40.68 1.82
668 729 2.482839 CCAGTGGTCAACGCCAAAATTT 60.483 45.455 0.00 0.00 40.68 1.82
669 730 1.068434 CCAGTGGTCAACGCCAAAATT 59.932 47.619 0.00 0.00 40.68 1.82
670 731 0.673437 CCAGTGGTCAACGCCAAAAT 59.327 50.000 0.00 0.00 40.68 1.82
671 732 2.010582 GCCAGTGGTCAACGCCAAAA 62.011 55.000 11.74 0.00 40.68 2.44
672 733 2.485795 GCCAGTGGTCAACGCCAAA 61.486 57.895 11.74 0.00 40.68 3.28
673 734 2.902423 AAGCCAGTGGTCAACGCCAA 62.902 55.000 11.74 0.00 40.68 4.52
674 735 3.414136 AAGCCAGTGGTCAACGCCA 62.414 57.895 11.74 0.00 35.93 5.69
675 736 2.594592 AAGCCAGTGGTCAACGCC 60.595 61.111 11.74 0.00 0.00 5.68
676 737 2.639286 CAAGCCAGTGGTCAACGC 59.361 61.111 11.74 0.00 0.00 4.84
677 738 2.260869 CCCAAGCCAGTGGTCAACG 61.261 63.158 11.74 0.00 36.90 4.10
678 739 2.564721 GCCCAAGCCAGTGGTCAAC 61.565 63.158 11.74 0.00 36.90 3.18
679 740 2.203480 GCCCAAGCCAGTGGTCAA 60.203 61.111 11.74 0.00 36.90 3.18
680 741 3.177884 AGCCCAAGCCAGTGGTCA 61.178 61.111 11.74 0.00 41.25 4.02
681 742 2.674380 CAGCCCAAGCCAGTGGTC 60.674 66.667 11.74 3.09 41.25 4.02
682 743 4.982701 GCAGCCCAAGCCAGTGGT 62.983 66.667 11.74 0.00 41.25 4.16
689 750 4.362476 CCAAACGGCAGCCCAAGC 62.362 66.667 5.63 0.00 40.32 4.01
690 751 1.937546 GATCCAAACGGCAGCCCAAG 61.938 60.000 5.63 0.00 0.00 3.61
691 752 1.976474 GATCCAAACGGCAGCCCAA 60.976 57.895 5.63 0.00 0.00 4.12
692 753 2.361104 GATCCAAACGGCAGCCCA 60.361 61.111 5.63 0.00 0.00 5.36
693 754 1.937546 CTTGATCCAAACGGCAGCCC 61.938 60.000 5.63 0.00 0.00 5.19
694 755 1.508088 CTTGATCCAAACGGCAGCC 59.492 57.895 0.00 0.00 0.00 4.85
695 756 1.508088 CCTTGATCCAAACGGCAGC 59.492 57.895 0.00 0.00 0.00 5.25
696 757 1.508088 GCCTTGATCCAAACGGCAG 59.492 57.895 5.44 0.00 35.59 4.85
697 758 1.976474 GGCCTTGATCCAAACGGCA 60.976 57.895 0.00 0.00 36.71 5.69
698 759 1.531739 TTGGCCTTGATCCAAACGGC 61.532 55.000 3.32 0.00 40.35 5.68
699 760 0.965439 TTTGGCCTTGATCCAAACGG 59.035 50.000 3.32 0.00 45.60 4.44
717 778 6.772360 AATTTTGGCAGACAACCAATTTTT 57.228 29.167 0.00 0.00 46.25 1.94
718 779 6.458070 CGAAATTTTGGCAGACAACCAATTTT 60.458 34.615 11.24 0.77 46.25 1.82
719 780 5.007528 CGAAATTTTGGCAGACAACCAATTT 59.992 36.000 10.12 10.12 46.25 1.82
720 781 4.511082 CGAAATTTTGGCAGACAACCAATT 59.489 37.500 0.00 0.00 46.25 2.32
721 782 4.057432 CGAAATTTTGGCAGACAACCAAT 58.943 39.130 0.00 0.00 46.25 3.16
722 783 3.452474 CGAAATTTTGGCAGACAACCAA 58.548 40.909 0.00 0.00 45.37 3.67
723 784 2.223923 CCGAAATTTTGGCAGACAACCA 60.224 45.455 11.63 0.00 39.19 3.67
724 785 2.223947 ACCGAAATTTTGGCAGACAACC 60.224 45.455 22.42 0.00 39.19 3.77
725 786 3.049912 GACCGAAATTTTGGCAGACAAC 58.950 45.455 22.42 4.23 39.19 3.32
726 787 2.287308 CGACCGAAATTTTGGCAGACAA 60.287 45.455 22.42 0.00 34.93 3.18
727 788 1.265635 CGACCGAAATTTTGGCAGACA 59.734 47.619 22.42 0.00 34.93 3.41
728 789 1.401018 CCGACCGAAATTTTGGCAGAC 60.401 52.381 22.42 11.48 34.93 3.51
729 790 0.878416 CCGACCGAAATTTTGGCAGA 59.122 50.000 22.42 0.00 34.93 4.26
730 791 0.732538 GCCGACCGAAATTTTGGCAG 60.733 55.000 22.42 16.17 42.03 4.85
731 792 1.287503 GCCGACCGAAATTTTGGCA 59.712 52.632 22.42 0.00 42.03 4.92
732 793 0.732538 CTGCCGACCGAAATTTTGGC 60.733 55.000 22.42 15.67 42.76 4.52
733 794 0.596082 ACTGCCGACCGAAATTTTGG 59.404 50.000 21.13 21.13 37.75 3.28
734 795 2.287308 TGAACTGCCGACCGAAATTTTG 60.287 45.455 0.00 0.00 0.00 2.44
735 796 1.950909 TGAACTGCCGACCGAAATTTT 59.049 42.857 0.00 0.00 0.00 1.82
736 797 1.535462 CTGAACTGCCGACCGAAATTT 59.465 47.619 0.00 0.00 0.00 1.82
737 798 1.156736 CTGAACTGCCGACCGAAATT 58.843 50.000 0.00 0.00 0.00 1.82
738 799 0.034896 ACTGAACTGCCGACCGAAAT 59.965 50.000 0.00 0.00 0.00 2.17
739 800 0.179067 AACTGAACTGCCGACCGAAA 60.179 50.000 0.00 0.00 0.00 3.46
740 801 0.179067 AAACTGAACTGCCGACCGAA 60.179 50.000 0.00 0.00 0.00 4.30
741 802 0.179067 AAAACTGAACTGCCGACCGA 60.179 50.000 0.00 0.00 0.00 4.69
742 803 0.234884 GAAAACTGAACTGCCGACCG 59.765 55.000 0.00 0.00 0.00 4.79
743 804 1.002792 GTGAAAACTGAACTGCCGACC 60.003 52.381 0.00 0.00 0.00 4.79
744 805 1.332904 CGTGAAAACTGAACTGCCGAC 60.333 52.381 0.00 0.00 0.00 4.79
745 806 0.934496 CGTGAAAACTGAACTGCCGA 59.066 50.000 0.00 0.00 0.00 5.54
746 807 0.657368 GCGTGAAAACTGAACTGCCG 60.657 55.000 0.00 0.00 0.00 5.69
747 808 0.317854 GGCGTGAAAACTGAACTGCC 60.318 55.000 0.00 0.00 0.00 4.85
748 809 0.317854 GGGCGTGAAAACTGAACTGC 60.318 55.000 0.00 0.00 0.00 4.40
749 810 0.041312 CGGGCGTGAAAACTGAACTG 60.041 55.000 0.00 0.00 0.00 3.16
750 811 1.782028 GCGGGCGTGAAAACTGAACT 61.782 55.000 0.00 0.00 0.00 3.01
751 812 1.370051 GCGGGCGTGAAAACTGAAC 60.370 57.895 0.00 0.00 0.00 3.18
752 813 2.887889 CGCGGGCGTGAAAACTGAA 61.888 57.895 4.64 0.00 34.35 3.02
753 814 3.342627 CGCGGGCGTGAAAACTGA 61.343 61.111 4.64 0.00 34.35 3.41
783 844 4.856801 ATGAAATCCGCCGCCGCT 62.857 61.111 0.00 0.00 0.00 5.52
784 845 4.313675 GATGAAATCCGCCGCCGC 62.314 66.667 0.00 0.00 37.38 6.53
785 846 4.000557 CGATGAAATCCGCCGCCG 62.001 66.667 0.00 0.00 41.39 6.46
786 847 4.313675 GCGATGAAATCCGCCGCC 62.314 66.667 0.00 0.00 41.39 6.13
787 848 4.313675 GGCGATGAAATCCGCCGC 62.314 66.667 10.05 0.00 46.82 6.53
790 851 2.208326 ATTTTGGCGATGAAATCCGC 57.792 45.000 0.00 0.00 41.39 5.54
791 852 4.681025 CCAATATTTTGGCGATGAAATCCG 59.319 41.667 1.72 0.00 45.71 4.18
820 881 1.046472 ACATGCCCTGCCAATCCATG 61.046 55.000 0.00 0.00 39.23 3.66
821 882 1.046472 CACATGCCCTGCCAATCCAT 61.046 55.000 0.00 0.00 0.00 3.41
822 883 1.683025 CACATGCCCTGCCAATCCA 60.683 57.895 0.00 0.00 0.00 3.41
823 884 3.085119 GCACATGCCCTGCCAATCC 62.085 63.158 0.00 0.00 34.31 3.01
824 885 2.497770 GCACATGCCCTGCCAATC 59.502 61.111 0.00 0.00 34.31 2.67
825 886 3.454573 CGCACATGCCCTGCCAAT 61.455 61.111 0.00 0.00 37.91 3.16
834 895 4.241999 GATGACGCCCGCACATGC 62.242 66.667 0.00 0.00 37.78 4.06
835 896 3.576356 GGATGACGCCCGCACATG 61.576 66.667 0.00 0.00 0.00 3.21
836 897 3.620419 TTGGATGACGCCCGCACAT 62.620 57.895 0.00 0.00 0.00 3.21
837 898 3.834013 TTTGGATGACGCCCGCACA 62.834 57.895 0.00 0.00 0.00 4.57
838 899 3.053291 TTTGGATGACGCCCGCAC 61.053 61.111 0.00 0.00 0.00 5.34
839 900 3.053291 GTTTGGATGACGCCCGCA 61.053 61.111 0.00 0.00 0.00 5.69
840 901 2.622011 TTGTTTGGATGACGCCCGC 61.622 57.895 0.00 0.00 0.00 6.13
841 902 1.209127 GTTGTTTGGATGACGCCCG 59.791 57.895 0.00 0.00 0.00 6.13
842 903 1.584495 GGTTGTTTGGATGACGCCC 59.416 57.895 0.00 0.00 0.00 6.13
843 904 1.584495 GGGTTGTTTGGATGACGCC 59.416 57.895 0.00 0.00 0.00 5.68
844 905 0.893727 AGGGGTTGTTTGGATGACGC 60.894 55.000 0.00 0.00 0.00 5.19
845 906 2.483014 TAGGGGTTGTTTGGATGACG 57.517 50.000 0.00 0.00 0.00 4.35
846 907 3.699538 GGATTAGGGGTTGTTTGGATGAC 59.300 47.826 0.00 0.00 0.00 3.06
847 908 3.309556 GGGATTAGGGGTTGTTTGGATGA 60.310 47.826 0.00 0.00 0.00 2.92
848 909 3.031013 GGGATTAGGGGTTGTTTGGATG 58.969 50.000 0.00 0.00 0.00 3.51
849 910 2.023404 GGGGATTAGGGGTTGTTTGGAT 60.023 50.000 0.00 0.00 0.00 3.41
850 911 1.359818 GGGGATTAGGGGTTGTTTGGA 59.640 52.381 0.00 0.00 0.00 3.53
851 912 1.361197 AGGGGATTAGGGGTTGTTTGG 59.639 52.381 0.00 0.00 0.00 3.28
852 913 2.919772 AGGGGATTAGGGGTTGTTTG 57.080 50.000 0.00 0.00 0.00 2.93
853 914 4.108287 TGTTTAGGGGATTAGGGGTTGTTT 59.892 41.667 0.00 0.00 0.00 2.83
854 915 3.663632 TGTTTAGGGGATTAGGGGTTGTT 59.336 43.478 0.00 0.00 0.00 2.83
855 916 3.010920 GTGTTTAGGGGATTAGGGGTTGT 59.989 47.826 0.00 0.00 0.00 3.32
856 917 3.626475 GGTGTTTAGGGGATTAGGGGTTG 60.626 52.174 0.00 0.00 0.00 3.77
857 918 2.584031 GGTGTTTAGGGGATTAGGGGTT 59.416 50.000 0.00 0.00 0.00 4.11
858 919 2.211532 GGTGTTTAGGGGATTAGGGGT 58.788 52.381 0.00 0.00 0.00 4.95
859 920 2.092049 GTGGTGTTTAGGGGATTAGGGG 60.092 54.545 0.00 0.00 0.00 4.79
860 921 2.420967 CGTGGTGTTTAGGGGATTAGGG 60.421 54.545 0.00 0.00 0.00 3.53
861 922 2.502538 TCGTGGTGTTTAGGGGATTAGG 59.497 50.000 0.00 0.00 0.00 2.69
862 923 3.449737 TCTCGTGGTGTTTAGGGGATTAG 59.550 47.826 0.00 0.00 0.00 1.73
863 924 3.443052 TCTCGTGGTGTTTAGGGGATTA 58.557 45.455 0.00 0.00 0.00 1.75
864 925 2.236395 CTCTCGTGGTGTTTAGGGGATT 59.764 50.000 0.00 0.00 0.00 3.01
865 926 1.831736 CTCTCGTGGTGTTTAGGGGAT 59.168 52.381 0.00 0.00 0.00 3.85
866 927 1.263356 CTCTCGTGGTGTTTAGGGGA 58.737 55.000 0.00 0.00 0.00 4.81
867 928 0.974383 ACTCTCGTGGTGTTTAGGGG 59.026 55.000 0.00 0.00 0.00 4.79
868 929 2.299297 AGAACTCTCGTGGTGTTTAGGG 59.701 50.000 0.00 0.00 32.64 3.53
956 1017 9.701098 GGTGTAATTGGTATCTTCACGATATTA 57.299 33.333 0.00 0.00 36.99 0.98
957 1018 7.660208 GGGTGTAATTGGTATCTTCACGATATT 59.340 37.037 0.00 0.00 36.99 1.28
958 1019 7.159372 GGGTGTAATTGGTATCTTCACGATAT 58.841 38.462 0.00 0.00 36.99 1.63
959 1020 6.518493 GGGTGTAATTGGTATCTTCACGATA 58.482 40.000 0.00 0.00 33.48 2.92
960 1021 5.365619 GGGTGTAATTGGTATCTTCACGAT 58.634 41.667 0.00 0.00 36.11 3.73
961 1022 4.678574 CGGGTGTAATTGGTATCTTCACGA 60.679 45.833 0.00 0.00 0.00 4.35
962 1023 3.554324 CGGGTGTAATTGGTATCTTCACG 59.446 47.826 0.00 0.00 0.00 4.35
963 1024 3.875134 CCGGGTGTAATTGGTATCTTCAC 59.125 47.826 0.00 0.00 0.00 3.18
964 1025 3.683281 GCCGGGTGTAATTGGTATCTTCA 60.683 47.826 2.18 0.00 0.00 3.02
965 1026 2.876550 GCCGGGTGTAATTGGTATCTTC 59.123 50.000 2.18 0.00 0.00 2.87
966 1027 2.422377 GGCCGGGTGTAATTGGTATCTT 60.422 50.000 2.18 0.00 0.00 2.40
967 1028 1.142262 GGCCGGGTGTAATTGGTATCT 59.858 52.381 2.18 0.00 0.00 1.98
968 1029 1.142262 AGGCCGGGTGTAATTGGTATC 59.858 52.381 2.18 0.00 0.00 2.24
969 1030 1.142262 GAGGCCGGGTGTAATTGGTAT 59.858 52.381 2.18 0.00 0.00 2.73
970 1031 0.542805 GAGGCCGGGTGTAATTGGTA 59.457 55.000 2.18 0.00 0.00 3.25
971 1032 1.301954 GAGGCCGGGTGTAATTGGT 59.698 57.895 2.18 0.00 0.00 3.67
972 1033 0.748005 CTGAGGCCGGGTGTAATTGG 60.748 60.000 2.18 0.00 0.00 3.16
973 1034 0.748005 CCTGAGGCCGGGTGTAATTG 60.748 60.000 2.18 0.00 34.01 2.32
974 1035 1.607612 CCTGAGGCCGGGTGTAATT 59.392 57.895 2.18 0.00 34.01 1.40
975 1036 2.375345 CCCTGAGGCCGGGTGTAAT 61.375 63.158 2.18 0.00 37.10 1.89
976 1037 3.006728 CCCTGAGGCCGGGTGTAA 61.007 66.667 2.18 0.00 37.10 2.41
986 1047 2.765807 ACATCTCCGGCCCTGAGG 60.766 66.667 15.11 7.15 0.00 3.86
987 1048 2.818132 GACATCTCCGGCCCTGAG 59.182 66.667 10.11 10.11 0.00 3.35
1024 1085 1.459455 CCTGAGTCGCCGATGAGGAT 61.459 60.000 3.63 0.00 45.00 3.24
1055 1116 0.252742 AAGAGGAGGGGATTGACCGT 60.253 55.000 0.00 0.00 40.11 4.83
1256 1340 0.324943 ACCGTGTCCCAAATCAGGAG 59.675 55.000 0.00 0.00 32.84 3.69
1257 1341 1.276989 GTACCGTGTCCCAAATCAGGA 59.723 52.381 0.00 0.00 0.00 3.86
1258 1342 1.278127 AGTACCGTGTCCCAAATCAGG 59.722 52.381 0.00 0.00 0.00 3.86
1259 1343 2.233922 AGAGTACCGTGTCCCAAATCAG 59.766 50.000 0.00 0.00 0.00 2.90
1260 1344 2.253610 AGAGTACCGTGTCCCAAATCA 58.746 47.619 0.00 0.00 0.00 2.57
1261 1345 3.329929 AAGAGTACCGTGTCCCAAATC 57.670 47.619 0.00 0.00 0.00 2.17
1262 1346 3.558533 GGAAAGAGTACCGTGTCCCAAAT 60.559 47.826 0.00 0.00 0.00 2.32
1263 1347 2.224354 GGAAAGAGTACCGTGTCCCAAA 60.224 50.000 0.00 0.00 0.00 3.28
1264 1348 1.345415 GGAAAGAGTACCGTGTCCCAA 59.655 52.381 0.00 0.00 0.00 4.12
1265 1349 0.971386 GGAAAGAGTACCGTGTCCCA 59.029 55.000 0.00 0.00 0.00 4.37
1266 1350 1.204231 GAGGAAAGAGTACCGTGTCCC 59.796 57.143 0.00 0.00 0.00 4.46
1267 1351 2.164017 GAGAGGAAAGAGTACCGTGTCC 59.836 54.545 0.00 0.00 0.00 4.02
1268 1352 2.164017 GGAGAGGAAAGAGTACCGTGTC 59.836 54.545 0.00 0.00 0.00 3.67
1269 1353 2.169330 GGAGAGGAAAGAGTACCGTGT 58.831 52.381 0.00 0.00 0.00 4.49
1270 1354 2.094649 GTGGAGAGGAAAGAGTACCGTG 60.095 54.545 0.00 0.00 0.00 4.94
1271 1355 2.169330 GTGGAGAGGAAAGAGTACCGT 58.831 52.381 0.00 0.00 0.00 4.83
1272 1356 1.477295 GGTGGAGAGGAAAGAGTACCG 59.523 57.143 0.00 0.00 0.00 4.02
1273 1357 1.832366 GGGTGGAGAGGAAAGAGTACC 59.168 57.143 0.00 0.00 0.00 3.34
1274 1358 2.498078 CTGGGTGGAGAGGAAAGAGTAC 59.502 54.545 0.00 0.00 0.00 2.73
1275 1359 2.382305 TCTGGGTGGAGAGGAAAGAGTA 59.618 50.000 0.00 0.00 0.00 2.59
1276 1360 1.150135 TCTGGGTGGAGAGGAAAGAGT 59.850 52.381 0.00 0.00 0.00 3.24
1277 1361 1.944177 TCTGGGTGGAGAGGAAAGAG 58.056 55.000 0.00 0.00 0.00 2.85
1278 1362 2.472029 GATCTGGGTGGAGAGGAAAGA 58.528 52.381 0.00 0.00 0.00 2.52
1279 1363 1.488393 GGATCTGGGTGGAGAGGAAAG 59.512 57.143 0.00 0.00 0.00 2.62
1280 1364 1.203428 TGGATCTGGGTGGAGAGGAAA 60.203 52.381 0.00 0.00 0.00 3.13
1281 1365 0.417437 TGGATCTGGGTGGAGAGGAA 59.583 55.000 0.00 0.00 0.00 3.36
1282 1366 0.325671 GTGGATCTGGGTGGAGAGGA 60.326 60.000 0.00 0.00 0.00 3.71
1283 1367 1.341156 GGTGGATCTGGGTGGAGAGG 61.341 65.000 0.00 0.00 0.00 3.69
1284 1368 0.618680 TGGTGGATCTGGGTGGAGAG 60.619 60.000 0.00 0.00 0.00 3.20
1285 1369 0.044702 ATGGTGGATCTGGGTGGAGA 59.955 55.000 0.00 0.00 0.00 3.71
1324 1443 4.157656 TGGGCAACACTAATAGTTTCATGC 59.842 41.667 0.00 0.00 39.74 4.06
1325 1448 5.677091 GCTGGGCAACACTAATAGTTTCATG 60.677 44.000 0.00 0.00 39.74 3.07
1346 4570 0.171903 CCAATTTCGAAGCAGGGCTG 59.828 55.000 0.00 0.00 39.62 4.85
1348 4572 0.171231 GTCCAATTTCGAAGCAGGGC 59.829 55.000 0.00 0.00 0.00 5.19
1367 4596 0.523519 TATCTAGCAGAGATGCCGCG 59.476 55.000 0.00 0.00 45.05 6.46
1426 4745 2.029649 TGAACGTGACACTAGGGCTTAC 60.030 50.000 3.68 0.00 0.00 2.34
1428 4747 1.000955 CTGAACGTGACACTAGGGCTT 59.999 52.381 3.68 0.00 0.00 4.35
1430 4749 0.317479 ACTGAACGTGACACTAGGGC 59.683 55.000 3.68 0.00 0.00 5.19
1432 4751 4.096311 CGATAACTGAACGTGACACTAGG 58.904 47.826 3.68 0.00 0.00 3.02
1433 4752 4.096311 CCGATAACTGAACGTGACACTAG 58.904 47.826 3.68 0.00 0.00 2.57
1434 4753 3.119743 CCCGATAACTGAACGTGACACTA 60.120 47.826 3.68 0.00 0.00 2.74
1435 4754 2.352421 CCCGATAACTGAACGTGACACT 60.352 50.000 3.68 0.00 0.00 3.55
1436 4755 1.990563 CCCGATAACTGAACGTGACAC 59.009 52.381 0.00 0.00 0.00 3.67
1437 4756 1.067425 CCCCGATAACTGAACGTGACA 60.067 52.381 0.00 0.00 0.00 3.58
1438 4757 1.203052 TCCCCGATAACTGAACGTGAC 59.797 52.381 0.00 0.00 0.00 3.67
1439 4758 1.548081 TCCCCGATAACTGAACGTGA 58.452 50.000 0.00 0.00 0.00 4.35
1909 5228 1.703438 GCGCAGAGATGCACCAAGAG 61.703 60.000 0.30 0.00 34.41 2.85
2105 5457 6.271391 TCATCCAAGAGAAACTTAGGTGGTAA 59.729 38.462 0.00 0.00 37.03 2.85
2124 5476 0.036732 AGGCGTTTCTGCTTCATCCA 59.963 50.000 0.00 0.00 34.52 3.41
2149 5501 7.397221 AGGATCACATAACAGTCTTGAATCAA 58.603 34.615 0.00 0.00 0.00 2.57
2235 5587 4.202567 ACACTCCCATCCACATTTTGTACT 60.203 41.667 0.00 0.00 0.00 2.73
2299 5651 6.911250 TCTGTACATTAGAAACTGGACTGA 57.089 37.500 0.00 0.00 33.37 3.41
2313 5665 7.876068 TCCTACGTTTTCAGAATTCTGTACATT 59.124 33.333 29.80 18.33 44.12 2.71
2334 6387 6.937436 ATTATGTGTTTTCCCGATTCCTAC 57.063 37.500 0.00 0.00 0.00 3.18
2364 6417 4.142534 CCAGCACTCTAACACATGGATTTG 60.143 45.833 0.00 0.00 0.00 2.32
2369 6422 2.289631 TGACCAGCACTCTAACACATGG 60.290 50.000 0.00 0.00 0.00 3.66
2376 6429 4.380531 CAGTTCTTTGACCAGCACTCTAA 58.619 43.478 0.00 0.00 0.00 2.10
2381 6434 1.967319 TCCAGTTCTTTGACCAGCAC 58.033 50.000 0.00 0.00 0.00 4.40
2428 6755 6.764379 TCTATACATGTGAACCAAACACTCA 58.236 36.000 9.11 0.00 38.81 3.41
2429 6756 7.667043 TTCTATACATGTGAACCAAACACTC 57.333 36.000 9.11 0.00 38.81 3.51
2431 6758 7.326063 GCTTTTCTATACATGTGAACCAAACAC 59.674 37.037 9.11 0.00 38.55 3.32
2434 6761 7.517614 TGCTTTTCTATACATGTGAACCAAA 57.482 32.000 9.11 1.73 0.00 3.28
2453 6780 5.474532 TCATATCTTTTGACTGTGCTGCTTT 59.525 36.000 0.00 0.00 0.00 3.51
2500 6827 9.924010 ATAGTATGAGACCAAGTACTTAGTTCT 57.076 33.333 8.04 9.84 0.00 3.01
2592 6919 1.804151 TGGAGCAGAAAATTTCCGTCG 59.196 47.619 1.57 0.00 32.27 5.12
2596 6923 8.831715 TTAAAGAAATGGAGCAGAAAATTTCC 57.168 30.769 1.57 0.00 38.99 3.13
2598 6925 9.056005 GGTTTAAAGAAATGGAGCAGAAAATTT 57.944 29.630 0.00 0.00 0.00 1.82
2601 6928 7.118496 TGGTTTAAAGAAATGGAGCAGAAAA 57.882 32.000 0.00 0.00 0.00 2.29
2712 7040 6.144886 CCGTGTTCGCTGTTATTATAGCATTA 59.855 38.462 1.40 0.00 38.31 1.90
2739 7068 4.046103 AGAATAGGGTCTGAGTATAGGGGG 59.954 50.000 0.00 0.00 0.00 5.40
2746 7075 6.928348 TGTTGAAAGAATAGGGTCTGAGTA 57.072 37.500 0.00 0.00 0.00 2.59
2747 7076 5.825593 TGTTGAAAGAATAGGGTCTGAGT 57.174 39.130 0.00 0.00 0.00 3.41
2829 7158 3.325293 TGAGATCACCAAGAGAACTGC 57.675 47.619 0.00 0.00 0.00 4.40
2930 7399 3.661944 CACCTCTAATGATGCTAGGCAG 58.338 50.000 0.00 0.00 43.65 4.85
2932 7401 2.038295 AGCACCTCTAATGATGCTAGGC 59.962 50.000 0.00 0.00 46.36 3.93
2975 7444 0.461339 CATTAACCACGGTAGCGGCT 60.461 55.000 19.72 7.98 0.00 5.52
2976 7445 0.741927 ACATTAACCACGGTAGCGGC 60.742 55.000 19.72 0.00 0.00 6.53
2977 7446 2.582728 TACATTAACCACGGTAGCGG 57.417 50.000 19.72 7.51 0.00 5.52
2978 7447 4.114073 TCAATACATTAACCACGGTAGCG 58.886 43.478 13.69 13.69 0.00 4.26
2979 7448 5.526111 ACATCAATACATTAACCACGGTAGC 59.474 40.000 0.00 0.00 0.00 3.58
2980 7449 6.511121 GCACATCAATACATTAACCACGGTAG 60.511 42.308 0.00 0.00 0.00 3.18
2981 7450 5.294799 GCACATCAATACATTAACCACGGTA 59.705 40.000 0.00 0.00 0.00 4.02
2982 7451 4.095782 GCACATCAATACATTAACCACGGT 59.904 41.667 0.00 0.00 0.00 4.83
2983 7452 4.095632 TGCACATCAATACATTAACCACGG 59.904 41.667 0.00 0.00 0.00 4.94
2984 7453 5.228579 TGCACATCAATACATTAACCACG 57.771 39.130 0.00 0.00 0.00 4.94
2985 7454 6.794374 TCATGCACATCAATACATTAACCAC 58.206 36.000 0.00 0.00 0.00 4.16
2986 7455 7.401955 TTCATGCACATCAATACATTAACCA 57.598 32.000 0.00 0.00 0.00 3.67
2987 7456 8.594687 GTTTTCATGCACATCAATACATTAACC 58.405 33.333 0.00 0.00 0.00 2.85
2988 7457 9.357652 AGTTTTCATGCACATCAATACATTAAC 57.642 29.630 0.00 0.00 0.00 2.01
2989 7458 9.926158 AAGTTTTCATGCACATCAATACATTAA 57.074 25.926 0.00 0.00 0.00 1.40
3025 7494 5.801350 ATCCATTGACACACGAAATAGTG 57.199 39.130 0.00 0.00 46.83 2.74
3026 7495 7.768582 TCATAATCCATTGACACACGAAATAGT 59.231 33.333 0.00 0.00 0.00 2.12
3027 7496 8.141835 TCATAATCCATTGACACACGAAATAG 57.858 34.615 0.00 0.00 0.00 1.73
3028 7497 8.675705 ATCATAATCCATTGACACACGAAATA 57.324 30.769 0.00 0.00 0.00 1.40
3029 7498 7.500227 AGATCATAATCCATTGACACACGAAAT 59.500 33.333 0.00 0.00 31.78 2.17
3030 7499 6.823182 AGATCATAATCCATTGACACACGAAA 59.177 34.615 0.00 0.00 31.78 3.46
3031 7500 6.348498 AGATCATAATCCATTGACACACGAA 58.652 36.000 0.00 0.00 31.78 3.85
3032 7501 5.917462 AGATCATAATCCATTGACACACGA 58.083 37.500 0.00 0.00 31.78 4.35
3033 7502 7.713764 TTAGATCATAATCCATTGACACACG 57.286 36.000 0.00 0.00 31.78 4.49
3034 7503 8.019669 GCATTAGATCATAATCCATTGACACAC 58.980 37.037 0.00 0.00 31.78 3.82
3035 7504 7.940688 AGCATTAGATCATAATCCATTGACACA 59.059 33.333 0.00 0.00 31.78 3.72
3036 7505 8.332996 AGCATTAGATCATAATCCATTGACAC 57.667 34.615 0.00 0.00 31.78 3.67
3070 7539 7.643764 GGAATCCGACACATTGTACATTTATTG 59.356 37.037 0.00 0.00 0.00 1.90
3081 7550 3.913548 TTTGTGGAATCCGACACATTG 57.086 42.857 4.47 0.00 45.90 2.82
3087 7556 4.881850 AGGATACAATTTGTGGAATCCGAC 59.118 41.667 17.93 0.00 43.64 4.79
3206 7675 8.773404 TGAGAAATACCTAAAGACTTAGCAAC 57.227 34.615 0.00 0.00 34.29 4.17
3238 7708 4.655963 TGCTTTGCTGAAGGACTTAAGAT 58.344 39.130 10.09 0.00 35.82 2.40
3245 7715 3.930634 AAGATTGCTTTGCTGAAGGAC 57.069 42.857 3.22 0.00 35.23 3.85
3284 7754 6.422776 TCGGAATTTAACTCAGCAATCTTC 57.577 37.500 0.00 0.00 0.00 2.87
3342 7828 4.455877 CGCTTAGGTTCCTCAAAGACAATT 59.544 41.667 5.78 0.00 0.00 2.32
3343 7829 4.003648 CGCTTAGGTTCCTCAAAGACAAT 58.996 43.478 5.78 0.00 0.00 2.71
3344 7830 3.181458 ACGCTTAGGTTCCTCAAAGACAA 60.181 43.478 5.78 0.00 0.00 3.18
3345 7831 2.367567 ACGCTTAGGTTCCTCAAAGACA 59.632 45.455 5.78 0.00 0.00 3.41
3351 7837 0.242825 CACGACGCTTAGGTTCCTCA 59.757 55.000 0.00 0.00 0.00 3.86
3368 7854 6.268825 ACATACCCATATCATCGTAGACAC 57.731 41.667 0.00 0.00 42.51 3.67
3369 7855 7.416326 GCATACATACCCATATCATCGTAGACA 60.416 40.741 0.00 0.00 42.51 3.41
3370 7856 6.918569 GCATACATACCCATATCATCGTAGAC 59.081 42.308 0.00 0.00 42.51 2.59
3403 7889 5.738118 AGAACAAACATGCACAAATTTGG 57.262 34.783 21.74 11.81 36.55 3.28
3416 7902 8.930760 CACATTCCTTTTACAAAAGAACAAACA 58.069 29.630 14.55 0.00 46.39 2.83
3417 7903 7.902917 GCACATTCCTTTTACAAAAGAACAAAC 59.097 33.333 14.55 0.00 46.39 2.93
3432 7918 2.095853 CGCGATAAGTGCACATTCCTTT 59.904 45.455 21.04 5.77 0.00 3.11
3468 7958 0.255890 ATGGAGGAATTCGTGGGGTG 59.744 55.000 5.18 0.00 0.00 4.61
3474 7964 0.394352 GGTGCCATGGAGGAATTCGT 60.394 55.000 18.40 0.00 41.22 3.85
3486 7976 0.037303 CACACAGAGGAAGGTGCCAT 59.963 55.000 0.00 0.00 38.57 4.40
3497 7987 1.972872 AGGAGCAAAACCACACAGAG 58.027 50.000 0.00 0.00 0.00 3.35
3498 7988 2.092429 AGAAGGAGCAAAACCACACAGA 60.092 45.455 0.00 0.00 0.00 3.41
3499 7989 2.291741 GAGAAGGAGCAAAACCACACAG 59.708 50.000 0.00 0.00 0.00 3.66
3500 7990 2.092429 AGAGAAGGAGCAAAACCACACA 60.092 45.455 0.00 0.00 0.00 3.72
3501 7991 2.576615 AGAGAAGGAGCAAAACCACAC 58.423 47.619 0.00 0.00 0.00 3.82
3502 7992 3.117888 AGAAGAGAAGGAGCAAAACCACA 60.118 43.478 0.00 0.00 0.00 4.17
3503 7993 3.481453 AGAAGAGAAGGAGCAAAACCAC 58.519 45.455 0.00 0.00 0.00 4.16
3504 7994 3.864789 AGAAGAGAAGGAGCAAAACCA 57.135 42.857 0.00 0.00 0.00 3.67
3505 7995 4.393834 AGAAGAAGAGAAGGAGCAAAACC 58.606 43.478 0.00 0.00 0.00 3.27
3506 7996 6.262049 AGAAAGAAGAAGAGAAGGAGCAAAAC 59.738 38.462 0.00 0.00 0.00 2.43
3507 7997 6.360618 AGAAAGAAGAAGAGAAGGAGCAAAA 58.639 36.000 0.00 0.00 0.00 2.44
3508 7998 5.934781 AGAAAGAAGAAGAGAAGGAGCAAA 58.065 37.500 0.00 0.00 0.00 3.68
3509 7999 5.559148 AGAAAGAAGAAGAGAAGGAGCAA 57.441 39.130 0.00 0.00 0.00 3.91
3510 8000 5.559148 AAGAAAGAAGAAGAGAAGGAGCA 57.441 39.130 0.00 0.00 0.00 4.26
3511 8001 5.872617 GGTAAGAAAGAAGAAGAGAAGGAGC 59.127 44.000 0.00 0.00 0.00 4.70
3512 8002 7.096551 CAGGTAAGAAAGAAGAAGAGAAGGAG 58.903 42.308 0.00 0.00 0.00 3.69
3513 8003 6.555360 ACAGGTAAGAAAGAAGAAGAGAAGGA 59.445 38.462 0.00 0.00 0.00 3.36
3514 8004 6.764379 ACAGGTAAGAAAGAAGAAGAGAAGG 58.236 40.000 0.00 0.00 0.00 3.46
3515 8005 7.172361 CCAACAGGTAAGAAAGAAGAAGAGAAG 59.828 40.741 0.00 0.00 0.00 2.85
3516 8006 6.992715 CCAACAGGTAAGAAAGAAGAAGAGAA 59.007 38.462 0.00 0.00 0.00 2.87
3517 8007 6.326583 TCCAACAGGTAAGAAAGAAGAAGAGA 59.673 38.462 0.00 0.00 0.00 3.10
3518 8008 6.525629 TCCAACAGGTAAGAAAGAAGAAGAG 58.474 40.000 0.00 0.00 0.00 2.85
3519 8009 6.494666 TCCAACAGGTAAGAAAGAAGAAGA 57.505 37.500 0.00 0.00 0.00 2.87
3520 8010 5.180304 GCTCCAACAGGTAAGAAAGAAGAAG 59.820 44.000 0.00 0.00 0.00 2.85
3521 8011 5.063880 GCTCCAACAGGTAAGAAAGAAGAA 58.936 41.667 0.00 0.00 0.00 2.52
3531 8021 6.969993 ATTAAGTTTTGCTCCAACAGGTAA 57.030 33.333 0.00 0.00 0.00 2.85
3532 8022 6.322712 ACAATTAAGTTTTGCTCCAACAGGTA 59.677 34.615 0.00 0.00 0.00 3.08
3536 8026 6.322712 ACCTACAATTAAGTTTTGCTCCAACA 59.677 34.615 0.00 0.00 0.00 3.33
3538 8028 6.322712 ACACCTACAATTAAGTTTTGCTCCAA 59.677 34.615 0.00 0.00 0.00 3.53
3552 8042 7.224297 AGTTTGACATACTCACACCTACAATT 58.776 34.615 0.00 0.00 30.79 2.32
3592 8082 4.017808 CAGTAGAAGCAGGTACTAGTGGT 58.982 47.826 5.39 0.00 36.02 4.16
3602 8092 2.237143 TCCCATTCACAGTAGAAGCAGG 59.763 50.000 0.00 0.00 0.00 4.85
3604 8094 4.365514 TTTCCCATTCACAGTAGAAGCA 57.634 40.909 0.00 0.00 0.00 3.91
3610 8100 6.889177 TGCTAAATCATTTCCCATTCACAGTA 59.111 34.615 0.00 0.00 0.00 2.74
3613 8103 6.602410 TTGCTAAATCATTTCCCATTCACA 57.398 33.333 0.00 0.00 0.00 3.58
3619 8109 4.163839 CCCCAATTGCTAAATCATTTCCCA 59.836 41.667 0.00 0.00 0.00 4.37
3677 8169 1.729484 TGAGCGCGAGTTTCGTCTG 60.729 57.895 12.10 0.00 42.81 3.51
3681 8173 1.154093 TAGGTGAGCGCGAGTTTCG 60.154 57.895 12.10 0.00 43.89 3.46
3708 8200 7.489113 CAGTTATTGGGCTGACATATTTTCAAC 59.511 37.037 0.00 0.00 34.87 3.18
3739 8231 1.068588 GAAGCTTCCCAAAACCGCTTT 59.931 47.619 15.97 0.00 40.64 3.51
3740 8232 0.673985 GAAGCTTCCCAAAACCGCTT 59.326 50.000 15.97 0.00 42.98 4.68
3744 8236 1.889170 CCTCAGAAGCTTCCCAAAACC 59.111 52.381 22.81 0.00 0.00 3.27
3773 8265 4.703897 TCAAATCAGACAGAAAGTTCCGT 58.296 39.130 0.00 0.00 0.00 4.69
3780 8272 7.495279 CCCAAAATTGTTCAAATCAGACAGAAA 59.505 33.333 0.00 0.00 0.00 2.52
3790 8282 6.899089 AGAACCTTCCCAAAATTGTTCAAAT 58.101 32.000 0.00 0.00 35.68 2.32
3799 8292 3.181437 ACCACGTAGAACCTTCCCAAAAT 60.181 43.478 0.00 0.00 0.00 1.82
3830 8323 8.531146 AGAGGAAAACACAGAAAAGAAAAATGA 58.469 29.630 0.00 0.00 0.00 2.57
3831 8324 8.707938 AGAGGAAAACACAGAAAAGAAAAATG 57.292 30.769 0.00 0.00 0.00 2.32
3834 8327 8.342634 CGATAGAGGAAAACACAGAAAAGAAAA 58.657 33.333 0.00 0.00 39.76 2.29
3835 8328 7.041372 CCGATAGAGGAAAACACAGAAAAGAAA 60.041 37.037 0.00 0.00 39.76 2.52
3838 8331 5.701290 ACCGATAGAGGAAAACACAGAAAAG 59.299 40.000 0.00 0.00 39.76 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.