Multiple sequence alignment - TraesCS3D01G494800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G494800 chr3D 100.000 2357 0 0 1 2357 587420855 587418499 0.000000e+00 4353
1 TraesCS3D01G494800 chr3D 98.011 905 15 2 1454 2357 598401143 598400241 0.000000e+00 1568
2 TraesCS3D01G494800 chr3D 96.955 821 23 2 635 1453 613711276 613712096 0.000000e+00 1376
3 TraesCS3D01G494800 chr3D 96.489 826 27 2 630 1453 584701391 584700566 0.000000e+00 1363
4 TraesCS3D01G494800 chr4D 98.122 905 16 1 1453 2357 461498637 461499540 0.000000e+00 1576
5 TraesCS3D01G494800 chr4D 97.572 906 18 2 1454 2357 3497465 3496562 0.000000e+00 1548
6 TraesCS3D01G494800 chr5D 98.119 904 15 1 1454 2357 18459138 18460039 0.000000e+00 1574
7 TraesCS3D01G494800 chr5D 97.898 904 15 3 1454 2357 509281985 509281086 0.000000e+00 1561
8 TraesCS3D01G494800 chr5D 97.582 910 16 2 1454 2357 550390431 550389522 0.000000e+00 1554
9 TraesCS3D01G494800 chr5D 97.212 825 22 1 630 1453 275171747 275170923 0.000000e+00 1395
10 TraesCS3D01G494800 chr2D 97.788 904 15 3 1454 2357 173859838 173858940 0.000000e+00 1554
11 TraesCS3D01G494800 chr2D 97.239 833 21 2 623 1453 73126878 73126046 0.000000e+00 1410
12 TraesCS3D01G494800 chr7D 97.574 907 15 2 1451 2357 549218719 549219618 0.000000e+00 1546
13 TraesCS3D01G494800 chrUn 97.259 912 21 3 1446 2357 110740242 110741149 0.000000e+00 1543
14 TraesCS3D01G494800 chr1D 97.576 825 18 2 630 1452 60171815 60170991 0.000000e+00 1411
15 TraesCS3D01G494800 chr1D 97.337 826 20 2 630 1453 205134696 205133871 0.000000e+00 1402
16 TraesCS3D01G494800 chr1D 97.108 830 21 3 626 1453 247505760 247504932 0.000000e+00 1397
17 TraesCS3D01G494800 chr7B 96.731 826 24 3 630 1453 720163388 720162564 0.000000e+00 1373
18 TraesCS3D01G494800 chr6D 96.727 825 26 1 630 1453 57791141 57790317 0.000000e+00 1373
19 TraesCS3D01G494800 chr3B 95.218 481 12 3 154 632 784524850 784524379 0.000000e+00 750
20 TraesCS3D01G494800 chr3B 95.010 481 13 5 154 632 784453713 784453242 0.000000e+00 745
21 TraesCS3D01G494800 chr3B 96.894 161 5 0 1 161 784525204 784525044 1.070000e-68 270
22 TraesCS3D01G494800 chr3B 96.273 161 6 0 1 161 784454066 784453906 4.990000e-67 265


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G494800 chr3D 587418499 587420855 2356 True 4353 4353 100.0000 1 2357 1 chr3D.!!$R2 2356
1 TraesCS3D01G494800 chr3D 598400241 598401143 902 True 1568 1568 98.0110 1454 2357 1 chr3D.!!$R3 903
2 TraesCS3D01G494800 chr3D 613711276 613712096 820 False 1376 1376 96.9550 635 1453 1 chr3D.!!$F1 818
3 TraesCS3D01G494800 chr3D 584700566 584701391 825 True 1363 1363 96.4890 630 1453 1 chr3D.!!$R1 823
4 TraesCS3D01G494800 chr4D 461498637 461499540 903 False 1576 1576 98.1220 1453 2357 1 chr4D.!!$F1 904
5 TraesCS3D01G494800 chr4D 3496562 3497465 903 True 1548 1548 97.5720 1454 2357 1 chr4D.!!$R1 903
6 TraesCS3D01G494800 chr5D 18459138 18460039 901 False 1574 1574 98.1190 1454 2357 1 chr5D.!!$F1 903
7 TraesCS3D01G494800 chr5D 509281086 509281985 899 True 1561 1561 97.8980 1454 2357 1 chr5D.!!$R2 903
8 TraesCS3D01G494800 chr5D 550389522 550390431 909 True 1554 1554 97.5820 1454 2357 1 chr5D.!!$R3 903
9 TraesCS3D01G494800 chr5D 275170923 275171747 824 True 1395 1395 97.2120 630 1453 1 chr5D.!!$R1 823
10 TraesCS3D01G494800 chr2D 173858940 173859838 898 True 1554 1554 97.7880 1454 2357 1 chr2D.!!$R2 903
11 TraesCS3D01G494800 chr2D 73126046 73126878 832 True 1410 1410 97.2390 623 1453 1 chr2D.!!$R1 830
12 TraesCS3D01G494800 chr7D 549218719 549219618 899 False 1546 1546 97.5740 1451 2357 1 chr7D.!!$F1 906
13 TraesCS3D01G494800 chrUn 110740242 110741149 907 False 1543 1543 97.2590 1446 2357 1 chrUn.!!$F1 911
14 TraesCS3D01G494800 chr1D 60170991 60171815 824 True 1411 1411 97.5760 630 1452 1 chr1D.!!$R1 822
15 TraesCS3D01G494800 chr1D 205133871 205134696 825 True 1402 1402 97.3370 630 1453 1 chr1D.!!$R2 823
16 TraesCS3D01G494800 chr1D 247504932 247505760 828 True 1397 1397 97.1080 626 1453 1 chr1D.!!$R3 827
17 TraesCS3D01G494800 chr7B 720162564 720163388 824 True 1373 1373 96.7310 630 1453 1 chr7B.!!$R1 823
18 TraesCS3D01G494800 chr6D 57790317 57791141 824 True 1373 1373 96.7270 630 1453 1 chr6D.!!$R1 823
19 TraesCS3D01G494800 chr3B 784524379 784525204 825 True 510 750 96.0560 1 632 2 chr3B.!!$R2 631
20 TraesCS3D01G494800 chr3B 784453242 784454066 824 True 505 745 95.6415 1 632 2 chr3B.!!$R1 631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
558 559 0.035176 CATTGGGGTGCCACCTTTTG 59.965 55.0 14.71 3.24 38.64 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1719 1862 1.384643 CCAAAACCCCCAACCCCAA 60.385 57.895 0.0 0.0 0.0 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 5.352569 CCTTTGTTTACAGGTATCTGCTCAG 59.647 44.000 1.90 0.00 44.59 3.35
119 120 2.916716 GCGCACAATATTTGTTGTCTGG 59.083 45.455 0.30 0.00 43.23 3.86
124 125 4.681025 CACAATATTTGTTGTCTGGTGTGC 59.319 41.667 0.00 0.00 43.23 4.57
144 145 4.158394 GTGCTTTCTCTTATCAATGCCCAA 59.842 41.667 0.00 0.00 0.00 4.12
161 162 5.819991 TGCCCAAATTCAGAAGTATCTTCT 58.180 37.500 6.24 6.24 32.03 2.85
162 163 5.882557 TGCCCAAATTCAGAAGTATCTTCTC 59.117 40.000 8.77 0.00 32.03 2.87
163 164 5.882557 GCCCAAATTCAGAAGTATCTTCTCA 59.117 40.000 8.77 0.00 32.03 3.27
165 166 7.716998 GCCCAAATTCAGAAGTATCTTCTCATA 59.283 37.037 8.77 0.00 32.03 2.15
166 167 9.270640 CCCAAATTCAGAAGTATCTTCTCATAG 57.729 37.037 8.77 0.04 32.03 2.23
167 168 9.829507 CCAAATTCAGAAGTATCTTCTCATAGT 57.170 33.333 8.77 0.00 32.03 2.12
169 170 9.829507 AAATTCAGAAGTATCTTCTCATAGTGG 57.170 33.333 8.77 0.00 32.03 4.00
170 171 8.774546 ATTCAGAAGTATCTTCTCATAGTGGA 57.225 34.615 8.77 0.65 32.03 4.02
171 172 8.774546 TTCAGAAGTATCTTCTCATAGTGGAT 57.225 34.615 8.77 0.00 32.03 3.41
172 173 8.774546 TCAGAAGTATCTTCTCATAGTGGATT 57.225 34.615 8.77 0.00 32.03 3.01
173 174 8.855110 TCAGAAGTATCTTCTCATAGTGGATTC 58.145 37.037 8.77 0.00 32.03 2.52
174 175 8.087750 CAGAAGTATCTTCTCATAGTGGATTCC 58.912 40.741 8.77 0.00 32.03 3.01
175 176 7.786943 AGAAGTATCTTCTCATAGTGGATTCCA 59.213 37.037 0.00 0.00 29.15 3.53
176 177 7.537596 AGTATCTTCTCATAGTGGATTCCAG 57.462 40.000 5.39 0.00 32.34 3.86
177 178 7.072562 AGTATCTTCTCATAGTGGATTCCAGT 58.927 38.462 17.07 17.07 40.67 4.00
178 179 5.604758 TCTTCTCATAGTGGATTCCAGTG 57.395 43.478 21.17 13.19 37.77 3.66
179 180 3.827008 TCTCATAGTGGATTCCAGTGC 57.173 47.619 21.17 3.64 37.77 4.40
180 181 3.106827 TCTCATAGTGGATTCCAGTGCA 58.893 45.455 21.17 4.51 37.77 4.57
181 182 3.118629 TCTCATAGTGGATTCCAGTGCAC 60.119 47.826 21.17 9.40 37.77 4.57
182 183 2.092968 TCATAGTGGATTCCAGTGCACC 60.093 50.000 21.17 2.20 40.82 5.01
183 184 1.357137 TAGTGGATTCCAGTGCACCA 58.643 50.000 21.17 0.00 40.82 4.17
184 185 0.700564 AGTGGATTCCAGTGCACCAT 59.299 50.000 14.63 0.15 40.82 3.55
185 186 1.076024 AGTGGATTCCAGTGCACCATT 59.924 47.619 14.63 0.00 40.82 3.16
186 187 1.895131 GTGGATTCCAGTGCACCATTT 59.105 47.619 14.63 0.00 34.76 2.32
187 188 2.299867 GTGGATTCCAGTGCACCATTTT 59.700 45.455 14.63 0.00 34.76 1.82
188 189 2.971330 TGGATTCCAGTGCACCATTTTT 59.029 40.909 14.63 0.00 0.00 1.94
189 190 3.244146 TGGATTCCAGTGCACCATTTTTG 60.244 43.478 14.63 3.66 0.00 2.44
190 191 3.244181 GGATTCCAGTGCACCATTTTTGT 60.244 43.478 14.63 0.00 0.00 2.83
191 192 3.902881 TTCCAGTGCACCATTTTTGTT 57.097 38.095 14.63 0.00 0.00 2.83
192 193 3.176552 TCCAGTGCACCATTTTTGTTG 57.823 42.857 14.63 1.23 0.00 3.33
193 194 2.499289 TCCAGTGCACCATTTTTGTTGT 59.501 40.909 14.63 0.00 0.00 3.32
194 195 3.055530 TCCAGTGCACCATTTTTGTTGTT 60.056 39.130 14.63 0.00 0.00 2.83
195 196 3.688673 CCAGTGCACCATTTTTGTTGTTT 59.311 39.130 14.63 0.00 0.00 2.83
196 197 4.155644 CCAGTGCACCATTTTTGTTGTTTT 59.844 37.500 14.63 0.00 0.00 2.43
197 198 5.087397 CAGTGCACCATTTTTGTTGTTTTG 58.913 37.500 14.63 0.00 0.00 2.44
198 199 4.759183 AGTGCACCATTTTTGTTGTTTTGT 59.241 33.333 14.63 0.00 0.00 2.83
199 200 4.850470 GTGCACCATTTTTGTTGTTTTGTG 59.150 37.500 5.22 0.00 0.00 3.33
200 201 4.083110 TGCACCATTTTTGTTGTTTTGTGG 60.083 37.500 0.00 0.00 0.00 4.17
201 202 4.673841 GCACCATTTTTGTTGTTTTGTGGG 60.674 41.667 0.00 0.00 0.00 4.61
202 203 4.457257 CACCATTTTTGTTGTTTTGTGGGT 59.543 37.500 0.00 0.00 0.00 4.51
203 204 5.048434 CACCATTTTTGTTGTTTTGTGGGTT 60.048 36.000 0.00 0.00 0.00 4.11
204 205 5.536538 ACCATTTTTGTTGTTTTGTGGGTTT 59.463 32.000 0.00 0.00 0.00 3.27
205 206 6.040955 ACCATTTTTGTTGTTTTGTGGGTTTT 59.959 30.769 0.00 0.00 0.00 2.43
206 207 6.584184 CCATTTTTGTTGTTTTGTGGGTTTTC 59.416 34.615 0.00 0.00 0.00 2.29
207 208 6.944234 TTTTTGTTGTTTTGTGGGTTTTCT 57.056 29.167 0.00 0.00 0.00 2.52
208 209 6.546972 TTTTGTTGTTTTGTGGGTTTTCTC 57.453 33.333 0.00 0.00 0.00 2.87
209 210 4.195225 TGTTGTTTTGTGGGTTTTCTCC 57.805 40.909 0.00 0.00 0.00 3.71
210 211 3.835395 TGTTGTTTTGTGGGTTTTCTCCT 59.165 39.130 0.00 0.00 0.00 3.69
211 212 4.284746 TGTTGTTTTGTGGGTTTTCTCCTT 59.715 37.500 0.00 0.00 0.00 3.36
212 213 4.729227 TGTTTTGTGGGTTTTCTCCTTC 57.271 40.909 0.00 0.00 0.00 3.46
213 214 4.349365 TGTTTTGTGGGTTTTCTCCTTCT 58.651 39.130 0.00 0.00 0.00 2.85
214 215 5.511363 TGTTTTGTGGGTTTTCTCCTTCTA 58.489 37.500 0.00 0.00 0.00 2.10
215 216 5.358725 TGTTTTGTGGGTTTTCTCCTTCTAC 59.641 40.000 0.00 0.00 0.00 2.59
216 217 5.382664 TTTGTGGGTTTTCTCCTTCTACT 57.617 39.130 0.00 0.00 0.00 2.57
217 218 5.382664 TTGTGGGTTTTCTCCTTCTACTT 57.617 39.130 0.00 0.00 0.00 2.24
218 219 4.714632 TGTGGGTTTTCTCCTTCTACTTG 58.285 43.478 0.00 0.00 0.00 3.16
219 220 3.502595 GTGGGTTTTCTCCTTCTACTTGC 59.497 47.826 0.00 0.00 0.00 4.01
220 221 3.137544 TGGGTTTTCTCCTTCTACTTGCA 59.862 43.478 0.00 0.00 0.00 4.08
221 222 3.502595 GGGTTTTCTCCTTCTACTTGCAC 59.497 47.826 0.00 0.00 0.00 4.57
222 223 4.390264 GGTTTTCTCCTTCTACTTGCACT 58.610 43.478 0.00 0.00 0.00 4.40
223 224 4.822350 GGTTTTCTCCTTCTACTTGCACTT 59.178 41.667 0.00 0.00 0.00 3.16
224 225 5.995897 GGTTTTCTCCTTCTACTTGCACTTA 59.004 40.000 0.00 0.00 0.00 2.24
225 226 6.485648 GGTTTTCTCCTTCTACTTGCACTTAA 59.514 38.462 0.00 0.00 0.00 1.85
226 227 7.308049 GGTTTTCTCCTTCTACTTGCACTTAAG 60.308 40.741 0.00 0.00 0.00 1.85
227 228 6.665992 TTCTCCTTCTACTTGCACTTAAGA 57.334 37.500 10.09 0.00 0.00 2.10
228 229 6.859112 TCTCCTTCTACTTGCACTTAAGAT 57.141 37.500 10.09 0.00 0.00 2.40
229 230 7.246171 TCTCCTTCTACTTGCACTTAAGATT 57.754 36.000 10.09 0.00 0.00 2.40
230 231 7.099764 TCTCCTTCTACTTGCACTTAAGATTG 58.900 38.462 10.09 0.00 0.00 2.67
231 232 6.769512 TCCTTCTACTTGCACTTAAGATTGT 58.230 36.000 10.09 3.46 0.00 2.71
232 233 6.650807 TCCTTCTACTTGCACTTAAGATTGTG 59.349 38.462 10.09 0.00 37.26 3.33
233 234 6.428159 CCTTCTACTTGCACTTAAGATTGTGT 59.572 38.462 10.09 5.14 36.63 3.72
234 235 6.785488 TCTACTTGCACTTAAGATTGTGTG 57.215 37.500 10.09 0.00 36.63 3.82
235 236 6.288294 TCTACTTGCACTTAAGATTGTGTGT 58.712 36.000 10.09 2.13 36.63 3.72
236 237 5.835113 ACTTGCACTTAAGATTGTGTGTT 57.165 34.783 10.09 0.00 36.63 3.32
237 238 5.581605 ACTTGCACTTAAGATTGTGTGTTG 58.418 37.500 10.09 0.00 36.63 3.33
238 239 5.125417 ACTTGCACTTAAGATTGTGTGTTGT 59.875 36.000 10.09 0.00 36.63 3.32
239 240 4.919206 TGCACTTAAGATTGTGTGTTGTG 58.081 39.130 10.09 0.00 36.63 3.33
240 241 4.397730 TGCACTTAAGATTGTGTGTTGTGT 59.602 37.500 10.09 0.00 36.63 3.72
241 242 5.105957 TGCACTTAAGATTGTGTGTTGTGTT 60.106 36.000 10.09 0.00 36.63 3.32
242 243 5.804979 GCACTTAAGATTGTGTGTTGTGTTT 59.195 36.000 10.09 0.00 36.63 2.83
243 244 6.970043 GCACTTAAGATTGTGTGTTGTGTTTA 59.030 34.615 10.09 0.00 36.63 2.01
244 245 7.044314 GCACTTAAGATTGTGTGTTGTGTTTAC 60.044 37.037 10.09 0.00 36.63 2.01
245 246 7.965655 CACTTAAGATTGTGTGTTGTGTTTACA 59.034 33.333 10.09 0.00 34.31 2.41
246 247 8.181573 ACTTAAGATTGTGTGTTGTGTTTACAG 58.818 33.333 10.09 0.00 38.23 2.74
247 248 5.499139 AGATTGTGTGTTGTGTTTACAGG 57.501 39.130 0.00 0.00 38.23 4.00
248 249 4.947388 AGATTGTGTGTTGTGTTTACAGGT 59.053 37.500 0.00 0.00 38.23 4.00
249 250 5.417580 AGATTGTGTGTTGTGTTTACAGGTT 59.582 36.000 0.00 0.00 38.23 3.50
250 251 5.455056 TTGTGTGTTGTGTTTACAGGTTT 57.545 34.783 0.00 0.00 38.23 3.27
251 252 5.455056 TGTGTGTTGTGTTTACAGGTTTT 57.545 34.783 0.00 0.00 38.23 2.43
252 253 5.223382 TGTGTGTTGTGTTTACAGGTTTTG 58.777 37.500 0.00 0.00 38.23 2.44
253 254 4.090786 GTGTGTTGTGTTTACAGGTTTTGC 59.909 41.667 0.00 0.00 38.23 3.68
254 255 4.021894 TGTGTTGTGTTTACAGGTTTTGCT 60.022 37.500 0.00 0.00 38.23 3.91
255 256 4.326009 GTGTTGTGTTTACAGGTTTTGCTG 59.674 41.667 0.00 0.00 38.23 4.41
256 257 4.021894 TGTTGTGTTTACAGGTTTTGCTGT 60.022 37.500 0.00 0.00 38.23 4.40
257 258 4.103365 TGTGTTTACAGGTTTTGCTGTG 57.897 40.909 0.00 0.00 35.26 3.66
258 259 3.759086 TGTGTTTACAGGTTTTGCTGTGA 59.241 39.130 0.00 0.00 35.26 3.58
259 260 4.400884 TGTGTTTACAGGTTTTGCTGTGAT 59.599 37.500 0.00 0.00 35.26 3.06
260 261 5.105554 TGTGTTTACAGGTTTTGCTGTGATT 60.106 36.000 0.00 0.00 35.26 2.57
261 262 5.231991 GTGTTTACAGGTTTTGCTGTGATTG 59.768 40.000 0.00 0.00 35.26 2.67
262 263 4.582701 TTACAGGTTTTGCTGTGATTGG 57.417 40.909 0.00 0.00 35.26 3.16
263 264 2.387757 ACAGGTTTTGCTGTGATTGGT 58.612 42.857 0.00 0.00 31.95 3.67
264 265 2.362077 ACAGGTTTTGCTGTGATTGGTC 59.638 45.455 0.00 0.00 31.95 4.02
265 266 1.963515 AGGTTTTGCTGTGATTGGTCC 59.036 47.619 0.00 0.00 0.00 4.46
266 267 1.963515 GGTTTTGCTGTGATTGGTCCT 59.036 47.619 0.00 0.00 0.00 3.85
267 268 2.365293 GGTTTTGCTGTGATTGGTCCTT 59.635 45.455 0.00 0.00 0.00 3.36
268 269 3.552890 GGTTTTGCTGTGATTGGTCCTTC 60.553 47.826 0.00 0.00 0.00 3.46
269 270 1.909700 TTGCTGTGATTGGTCCTTCC 58.090 50.000 0.00 0.00 0.00 3.46
270 271 0.321564 TGCTGTGATTGGTCCTTCCG 60.322 55.000 0.00 0.00 39.52 4.30
271 272 1.026718 GCTGTGATTGGTCCTTCCGG 61.027 60.000 0.00 0.00 39.52 5.14
272 273 0.392998 CTGTGATTGGTCCTTCCGGG 60.393 60.000 0.00 0.00 39.52 5.73
273 274 1.077716 GTGATTGGTCCTTCCGGGG 60.078 63.158 0.00 0.00 39.52 5.73
274 275 2.124278 GATTGGTCCTTCCGGGGC 60.124 66.667 0.00 0.00 39.52 5.80
275 276 2.938798 ATTGGTCCTTCCGGGGCA 60.939 61.111 0.00 0.00 42.62 5.36
276 277 3.282374 ATTGGTCCTTCCGGGGCAC 62.282 63.158 0.00 0.00 42.62 5.01
278 279 3.728373 GGTCCTTCCGGGGCACAT 61.728 66.667 0.00 0.00 42.62 3.21
279 280 2.372074 GGTCCTTCCGGGGCACATA 61.372 63.158 0.00 0.00 42.62 2.29
280 281 1.146263 GTCCTTCCGGGGCACATAG 59.854 63.158 0.00 0.00 40.02 2.23
281 282 2.070039 TCCTTCCGGGGCACATAGG 61.070 63.158 0.00 0.00 35.33 2.57
282 283 2.510906 CTTCCGGGGCACATAGGG 59.489 66.667 0.00 0.00 0.00 3.53
283 284 3.774599 CTTCCGGGGCACATAGGGC 62.775 68.421 0.00 0.00 0.00 5.19
284 285 4.815973 TCCGGGGCACATAGGGCT 62.816 66.667 0.00 0.00 0.00 5.19
285 286 4.256180 CCGGGGCACATAGGGCTC 62.256 72.222 0.00 0.00 0.00 4.70
286 287 3.479203 CGGGGCACATAGGGCTCA 61.479 66.667 0.00 0.00 32.34 4.26
287 288 2.193248 GGGGCACATAGGGCTCAC 59.807 66.667 0.00 0.00 31.82 3.51
288 289 2.378634 GGGGCACATAGGGCTCACT 61.379 63.158 0.00 0.00 31.82 3.41
289 290 1.147153 GGGCACATAGGGCTCACTC 59.853 63.158 0.00 0.00 0.00 3.51
290 291 1.626356 GGGCACATAGGGCTCACTCA 61.626 60.000 0.00 0.00 0.00 3.41
291 292 0.179062 GGCACATAGGGCTCACTCAG 60.179 60.000 0.00 0.00 0.00 3.35
301 302 0.516439 GCTCACTCAGCTTGTTCTGC 59.484 55.000 0.00 0.00 45.83 4.26
302 303 1.877258 GCTCACTCAGCTTGTTCTGCT 60.877 52.381 0.00 0.00 45.83 4.24
309 310 2.283145 AGCTTGTTCTGCTGGATTGT 57.717 45.000 0.00 0.00 39.56 2.71
310 311 2.590821 AGCTTGTTCTGCTGGATTGTT 58.409 42.857 0.00 0.00 39.56 2.83
311 312 2.555757 AGCTTGTTCTGCTGGATTGTTC 59.444 45.455 0.00 0.00 39.56 3.18
312 313 2.352127 GCTTGTTCTGCTGGATTGTTCC 60.352 50.000 0.00 0.00 42.94 3.62
313 314 2.957402 TGTTCTGCTGGATTGTTCCT 57.043 45.000 0.00 0.00 43.07 3.36
314 315 3.228188 TGTTCTGCTGGATTGTTCCTT 57.772 42.857 0.00 0.00 43.07 3.36
315 316 3.149196 TGTTCTGCTGGATTGTTCCTTC 58.851 45.455 0.00 0.00 43.07 3.46
316 317 2.099141 TCTGCTGGATTGTTCCTTCG 57.901 50.000 0.00 0.00 43.07 3.79
317 318 1.089920 CTGCTGGATTGTTCCTTCGG 58.910 55.000 0.00 0.00 43.07 4.30
318 319 0.400213 TGCTGGATTGTTCCTTCGGT 59.600 50.000 0.00 0.00 43.07 4.69
319 320 1.626321 TGCTGGATTGTTCCTTCGGTA 59.374 47.619 0.00 0.00 43.07 4.02
320 321 2.039216 TGCTGGATTGTTCCTTCGGTAA 59.961 45.455 0.00 0.00 43.07 2.85
321 322 3.078837 GCTGGATTGTTCCTTCGGTAAA 58.921 45.455 0.00 0.00 43.07 2.01
322 323 3.694566 GCTGGATTGTTCCTTCGGTAAAT 59.305 43.478 0.00 0.00 43.07 1.40
323 324 4.201920 GCTGGATTGTTCCTTCGGTAAATC 60.202 45.833 0.00 0.00 43.07 2.17
324 325 4.266714 TGGATTGTTCCTTCGGTAAATCC 58.733 43.478 5.48 5.48 43.07 3.01
325 326 4.018779 TGGATTGTTCCTTCGGTAAATCCT 60.019 41.667 12.14 0.00 42.27 3.24
326 327 5.190132 TGGATTGTTCCTTCGGTAAATCCTA 59.810 40.000 12.14 0.00 42.27 2.94
327 328 6.126594 TGGATTGTTCCTTCGGTAAATCCTAT 60.127 38.462 12.14 0.00 42.27 2.57
328 329 6.204882 GGATTGTTCCTTCGGTAAATCCTATG 59.795 42.308 5.23 0.00 39.85 2.23
329 330 4.448210 TGTTCCTTCGGTAAATCCTATGC 58.552 43.478 0.00 0.00 0.00 3.14
330 331 4.163458 TGTTCCTTCGGTAAATCCTATGCT 59.837 41.667 0.00 0.00 0.00 3.79
331 332 4.602340 TCCTTCGGTAAATCCTATGCTC 57.398 45.455 0.00 0.00 0.00 4.26
332 333 3.005472 TCCTTCGGTAAATCCTATGCTCG 59.995 47.826 0.00 0.00 0.00 5.03
333 334 3.005472 CCTTCGGTAAATCCTATGCTCGA 59.995 47.826 0.00 0.00 0.00 4.04
334 335 4.322049 CCTTCGGTAAATCCTATGCTCGAT 60.322 45.833 0.00 0.00 0.00 3.59
335 336 4.436242 TCGGTAAATCCTATGCTCGATC 57.564 45.455 0.00 0.00 0.00 3.69
336 337 3.824443 TCGGTAAATCCTATGCTCGATCA 59.176 43.478 0.00 0.00 0.00 2.92
337 338 4.082733 TCGGTAAATCCTATGCTCGATCAG 60.083 45.833 0.00 0.00 0.00 2.90
350 351 3.999769 CTCGATCAGCATTTGACAAGTG 58.000 45.455 6.33 6.33 38.99 3.16
351 352 2.743664 TCGATCAGCATTTGACAAGTGG 59.256 45.455 12.08 0.00 38.99 4.00
352 353 2.730090 CGATCAGCATTTGACAAGTGGC 60.730 50.000 12.08 6.31 38.99 5.01
353 354 1.689984 TCAGCATTTGACAAGTGGCA 58.310 45.000 12.08 0.00 0.00 4.92
354 355 1.610038 TCAGCATTTGACAAGTGGCAG 59.390 47.619 12.08 3.94 32.66 4.85
355 356 0.316204 AGCATTTGACAAGTGGCAGC 59.684 50.000 12.08 0.00 32.66 5.25
356 357 0.316204 GCATTTGACAAGTGGCAGCT 59.684 50.000 12.08 0.00 32.66 4.24
357 358 1.541147 GCATTTGACAAGTGGCAGCTA 59.459 47.619 12.08 0.00 32.66 3.32
358 359 2.669391 GCATTTGACAAGTGGCAGCTAC 60.669 50.000 12.08 0.00 32.66 3.58
359 360 2.638480 TTTGACAAGTGGCAGCTACT 57.362 45.000 5.40 5.40 32.66 2.57
360 361 2.638480 TTGACAAGTGGCAGCTACTT 57.362 45.000 17.99 17.99 38.84 2.24
363 364 3.631453 CAAGTGGCAGCTACTTGGA 57.369 52.632 33.49 0.00 46.97 3.53
364 365 1.896220 CAAGTGGCAGCTACTTGGAA 58.104 50.000 33.49 0.00 46.97 3.53
365 366 1.537202 CAAGTGGCAGCTACTTGGAAC 59.463 52.381 33.49 0.00 46.97 3.62
366 367 1.059913 AGTGGCAGCTACTTGGAACT 58.940 50.000 5.40 0.00 0.00 3.01
367 368 1.421646 AGTGGCAGCTACTTGGAACTT 59.578 47.619 5.40 0.00 0.00 2.66
368 369 1.807142 GTGGCAGCTACTTGGAACTTC 59.193 52.381 0.70 0.00 0.00 3.01
369 370 1.271379 TGGCAGCTACTTGGAACTTCC 60.271 52.381 0.20 0.20 36.96 3.46
370 371 1.271379 GGCAGCTACTTGGAACTTCCA 60.271 52.381 6.39 6.39 46.61 3.53
380 381 2.383855 TGGAACTTCCAGTTTTGGTGG 58.616 47.619 6.39 0.00 42.67 4.61
381 382 2.291930 TGGAACTTCCAGTTTTGGTGGT 60.292 45.455 6.39 0.00 42.67 4.16
382 383 3.053544 TGGAACTTCCAGTTTTGGTGGTA 60.054 43.478 6.39 0.00 42.67 3.25
383 384 3.317149 GGAACTTCCAGTTTTGGTGGTAC 59.683 47.826 2.62 0.00 45.26 3.34
384 385 3.655615 ACTTCCAGTTTTGGTGGTACA 57.344 42.857 0.00 0.00 45.26 2.90
385 386 3.551846 ACTTCCAGTTTTGGTGGTACAG 58.448 45.455 0.00 0.00 45.26 2.74
386 387 3.053917 ACTTCCAGTTTTGGTGGTACAGT 60.054 43.478 0.00 0.00 45.26 3.55
387 388 3.655615 TCCAGTTTTGGTGGTACAGTT 57.344 42.857 0.00 0.00 45.26 3.16
388 389 3.283751 TCCAGTTTTGGTGGTACAGTTG 58.716 45.455 0.00 0.00 45.26 3.16
389 390 3.054287 TCCAGTTTTGGTGGTACAGTTGA 60.054 43.478 0.00 0.00 45.26 3.18
390 391 3.888930 CCAGTTTTGGTGGTACAGTTGAT 59.111 43.478 0.00 0.00 41.80 2.57
391 392 4.023193 CCAGTTTTGGTGGTACAGTTGATC 60.023 45.833 0.00 0.00 41.80 2.92
392 393 4.023193 CAGTTTTGGTGGTACAGTTGATCC 60.023 45.833 0.00 0.00 41.80 3.36
393 394 4.141251 AGTTTTGGTGGTACAGTTGATCCT 60.141 41.667 0.00 0.00 41.80 3.24
394 395 4.447138 TTTGGTGGTACAGTTGATCCTT 57.553 40.909 0.00 0.00 41.80 3.36
395 396 4.447138 TTGGTGGTACAGTTGATCCTTT 57.553 40.909 0.00 0.00 41.80 3.11
396 397 4.447138 TGGTGGTACAGTTGATCCTTTT 57.553 40.909 0.00 0.00 41.80 2.27
397 398 4.798882 TGGTGGTACAGTTGATCCTTTTT 58.201 39.130 0.00 0.00 41.80 1.94
398 399 4.825085 TGGTGGTACAGTTGATCCTTTTTC 59.175 41.667 0.00 0.00 41.80 2.29
399 400 5.070685 GGTGGTACAGTTGATCCTTTTTCT 58.929 41.667 0.00 0.00 41.80 2.52
400 401 5.535030 GGTGGTACAGTTGATCCTTTTTCTT 59.465 40.000 0.00 0.00 41.80 2.52
401 402 6.713450 GGTGGTACAGTTGATCCTTTTTCTTA 59.287 38.462 0.00 0.00 41.80 2.10
402 403 7.393515 GGTGGTACAGTTGATCCTTTTTCTTAT 59.606 37.037 0.00 0.00 41.80 1.73
403 404 8.793592 GTGGTACAGTTGATCCTTTTTCTTATT 58.206 33.333 0.00 0.00 41.80 1.40
404 405 9.362151 TGGTACAGTTGATCCTTTTTCTTATTT 57.638 29.630 0.00 0.00 0.00 1.40
408 409 9.147732 ACAGTTGATCCTTTTTCTTATTTTCCT 57.852 29.630 0.00 0.00 0.00 3.36
409 410 9.987272 CAGTTGATCCTTTTTCTTATTTTCCTT 57.013 29.630 0.00 0.00 0.00 3.36
425 426 9.784531 TTATTTTCCTTAATTCATTGTTTGGCA 57.215 25.926 0.00 0.00 0.00 4.92
426 427 8.688747 ATTTTCCTTAATTCATTGTTTGGCAA 57.311 26.923 0.00 0.00 41.89 4.52
427 428 7.727331 TTTCCTTAATTCATTGTTTGGCAAG 57.273 32.000 0.00 0.00 40.86 4.01
428 429 6.418057 TCCTTAATTCATTGTTTGGCAAGT 57.582 33.333 0.00 0.00 40.86 3.16
429 430 7.531857 TCCTTAATTCATTGTTTGGCAAGTA 57.468 32.000 0.00 0.00 40.86 2.24
430 431 7.957002 TCCTTAATTCATTGTTTGGCAAGTAA 58.043 30.769 0.00 0.15 40.86 2.24
431 432 7.870445 TCCTTAATTCATTGTTTGGCAAGTAAC 59.130 33.333 0.00 0.00 40.86 2.50
432 433 7.655328 CCTTAATTCATTGTTTGGCAAGTAACA 59.345 33.333 0.00 0.00 40.86 2.41
433 434 9.206870 CTTAATTCATTGTTTGGCAAGTAACAT 57.793 29.630 0.00 0.00 40.86 2.71
434 435 7.656707 AATTCATTGTTTGGCAAGTAACATC 57.343 32.000 0.00 0.00 40.86 3.06
435 436 6.403866 TTCATTGTTTGGCAAGTAACATCT 57.596 33.333 0.00 0.00 40.86 2.90
436 437 5.771469 TCATTGTTTGGCAAGTAACATCTG 58.229 37.500 0.00 4.08 40.86 2.90
437 438 3.641437 TGTTTGGCAAGTAACATCTGC 57.359 42.857 0.00 0.00 29.82 4.26
438 439 3.221771 TGTTTGGCAAGTAACATCTGCT 58.778 40.909 0.00 0.00 29.82 4.24
439 440 3.253188 TGTTTGGCAAGTAACATCTGCTC 59.747 43.478 0.00 0.00 29.82 4.26
440 441 2.857186 TGGCAAGTAACATCTGCTCA 57.143 45.000 0.00 0.00 0.00 4.26
441 442 2.426522 TGGCAAGTAACATCTGCTCAC 58.573 47.619 0.00 0.00 0.00 3.51
442 443 1.740025 GGCAAGTAACATCTGCTCACC 59.260 52.381 0.00 0.00 0.00 4.02
443 444 2.426522 GCAAGTAACATCTGCTCACCA 58.573 47.619 0.00 0.00 0.00 4.17
444 445 3.012518 GCAAGTAACATCTGCTCACCAT 58.987 45.455 0.00 0.00 0.00 3.55
445 446 3.181503 GCAAGTAACATCTGCTCACCATG 60.182 47.826 0.00 0.00 0.00 3.66
446 447 3.988976 AGTAACATCTGCTCACCATGT 57.011 42.857 0.00 0.00 31.90 3.21
447 448 4.292186 AGTAACATCTGCTCACCATGTT 57.708 40.909 0.00 0.00 42.20 2.71
448 449 4.005650 AGTAACATCTGCTCACCATGTTG 58.994 43.478 6.75 0.00 40.25 3.33
449 450 2.865119 ACATCTGCTCACCATGTTGA 57.135 45.000 0.00 0.00 0.00 3.18
450 451 3.361281 ACATCTGCTCACCATGTTGAT 57.639 42.857 0.00 0.00 0.00 2.57
451 452 3.693807 ACATCTGCTCACCATGTTGATT 58.306 40.909 0.00 0.00 0.00 2.57
452 453 3.442625 ACATCTGCTCACCATGTTGATTG 59.557 43.478 0.00 0.00 0.00 2.67
453 454 2.439409 TCTGCTCACCATGTTGATTGG 58.561 47.619 0.00 0.00 40.26 3.16
454 455 2.040145 TCTGCTCACCATGTTGATTGGA 59.960 45.455 0.00 0.00 37.69 3.53
455 456 2.821378 CTGCTCACCATGTTGATTGGAA 59.179 45.455 0.00 0.00 37.69 3.53
456 457 3.433343 TGCTCACCATGTTGATTGGAAT 58.567 40.909 0.00 0.00 37.69 3.01
457 458 3.833650 TGCTCACCATGTTGATTGGAATT 59.166 39.130 0.00 0.00 37.69 2.17
458 459 4.178540 GCTCACCATGTTGATTGGAATTG 58.821 43.478 0.00 0.00 37.69 2.32
459 460 4.082081 GCTCACCATGTTGATTGGAATTGA 60.082 41.667 0.00 0.00 37.69 2.57
460 461 5.389859 TCACCATGTTGATTGGAATTGAC 57.610 39.130 0.00 0.00 37.69 3.18
461 462 4.082841 TCACCATGTTGATTGGAATTGACG 60.083 41.667 0.00 0.00 37.69 4.35
462 463 4.078537 ACCATGTTGATTGGAATTGACGA 58.921 39.130 0.00 0.00 37.69 4.20
463 464 4.156556 ACCATGTTGATTGGAATTGACGAG 59.843 41.667 0.00 0.00 37.69 4.18
464 465 3.829886 TGTTGATTGGAATTGACGAGC 57.170 42.857 0.00 0.00 0.00 5.03
465 466 3.411446 TGTTGATTGGAATTGACGAGCT 58.589 40.909 0.00 0.00 0.00 4.09
466 467 3.189080 TGTTGATTGGAATTGACGAGCTG 59.811 43.478 0.00 0.00 0.00 4.24
467 468 3.333029 TGATTGGAATTGACGAGCTGA 57.667 42.857 0.00 0.00 0.00 4.26
468 469 3.877559 TGATTGGAATTGACGAGCTGAT 58.122 40.909 0.00 0.00 0.00 2.90
469 470 3.624410 TGATTGGAATTGACGAGCTGATG 59.376 43.478 0.00 0.00 0.00 3.07
470 471 3.333029 TTGGAATTGACGAGCTGATGA 57.667 42.857 0.00 0.00 0.00 2.92
471 472 3.333029 TGGAATTGACGAGCTGATGAA 57.667 42.857 0.00 0.00 0.00 2.57
472 473 3.264947 TGGAATTGACGAGCTGATGAAG 58.735 45.455 0.00 0.00 0.00 3.02
473 474 3.055891 TGGAATTGACGAGCTGATGAAGA 60.056 43.478 0.00 0.00 0.00 2.87
474 475 4.125703 GGAATTGACGAGCTGATGAAGAT 58.874 43.478 0.00 0.00 0.00 2.40
475 476 5.163416 TGGAATTGACGAGCTGATGAAGATA 60.163 40.000 0.00 0.00 0.00 1.98
476 477 5.931146 GGAATTGACGAGCTGATGAAGATAT 59.069 40.000 0.00 0.00 0.00 1.63
477 478 7.093354 GGAATTGACGAGCTGATGAAGATATA 58.907 38.462 0.00 0.00 0.00 0.86
478 479 7.763528 GGAATTGACGAGCTGATGAAGATATAT 59.236 37.037 0.00 0.00 0.00 0.86
479 480 8.476657 AATTGACGAGCTGATGAAGATATATG 57.523 34.615 0.00 0.00 0.00 1.78
480 481 5.405797 TGACGAGCTGATGAAGATATATGC 58.594 41.667 0.00 0.00 0.00 3.14
481 482 5.047802 TGACGAGCTGATGAAGATATATGCA 60.048 40.000 0.00 0.00 0.00 3.96
482 483 5.787380 ACGAGCTGATGAAGATATATGCAA 58.213 37.500 0.00 0.00 0.00 4.08
483 484 6.404708 ACGAGCTGATGAAGATATATGCAAT 58.595 36.000 0.00 0.00 0.00 3.56
484 485 6.877855 ACGAGCTGATGAAGATATATGCAATT 59.122 34.615 0.00 0.00 0.00 2.32
485 486 7.148457 ACGAGCTGATGAAGATATATGCAATTG 60.148 37.037 0.00 0.00 0.00 2.32
486 487 7.392494 AGCTGATGAAGATATATGCAATTGG 57.608 36.000 7.72 0.00 0.00 3.16
487 488 7.173032 AGCTGATGAAGATATATGCAATTGGA 58.827 34.615 7.72 4.46 0.00 3.53
488 489 7.668469 AGCTGATGAAGATATATGCAATTGGAA 59.332 33.333 2.94 0.00 0.00 3.53
489 490 8.467598 GCTGATGAAGATATATGCAATTGGAAT 58.532 33.333 2.94 2.12 0.00 3.01
491 492 9.523168 TGATGAAGATATATGCAATTGGAATCA 57.477 29.630 2.94 2.53 0.00 2.57
494 495 8.671028 TGAAGATATATGCAATTGGAATCATCG 58.329 33.333 2.94 0.00 0.00 3.84
495 496 7.563888 AGATATATGCAATTGGAATCATCGG 57.436 36.000 2.94 0.00 0.00 4.18
496 497 2.806608 ATGCAATTGGAATCATCGGC 57.193 45.000 2.94 0.00 0.00 5.54
497 498 1.766494 TGCAATTGGAATCATCGGCT 58.234 45.000 7.72 0.00 0.00 5.52
498 499 2.101783 TGCAATTGGAATCATCGGCTT 58.898 42.857 7.72 0.00 0.00 4.35
499 500 2.159212 TGCAATTGGAATCATCGGCTTG 60.159 45.455 7.72 0.00 0.00 4.01
500 501 2.159198 GCAATTGGAATCATCGGCTTGT 60.159 45.455 7.72 0.00 0.00 3.16
501 502 3.676873 GCAATTGGAATCATCGGCTTGTT 60.677 43.478 7.72 0.00 0.00 2.83
502 503 4.107622 CAATTGGAATCATCGGCTTGTTC 58.892 43.478 0.00 0.00 0.00 3.18
503 504 2.787473 TGGAATCATCGGCTTGTTCT 57.213 45.000 0.00 0.00 0.00 3.01
504 505 2.632377 TGGAATCATCGGCTTGTTCTC 58.368 47.619 0.00 0.00 0.00 2.87
505 506 2.237143 TGGAATCATCGGCTTGTTCTCT 59.763 45.455 0.00 0.00 0.00 3.10
506 507 2.869192 GGAATCATCGGCTTGTTCTCTC 59.131 50.000 0.00 0.00 0.00 3.20
507 508 3.431486 GGAATCATCGGCTTGTTCTCTCT 60.431 47.826 0.00 0.00 0.00 3.10
508 509 2.949451 TCATCGGCTTGTTCTCTCTC 57.051 50.000 0.00 0.00 0.00 3.20
509 510 2.451490 TCATCGGCTTGTTCTCTCTCT 58.549 47.619 0.00 0.00 0.00 3.10
510 511 3.621558 TCATCGGCTTGTTCTCTCTCTA 58.378 45.455 0.00 0.00 0.00 2.43
511 512 3.378742 TCATCGGCTTGTTCTCTCTCTAC 59.621 47.826 0.00 0.00 0.00 2.59
512 513 2.791655 TCGGCTTGTTCTCTCTCTACA 58.208 47.619 0.00 0.00 0.00 2.74
513 514 3.357203 TCGGCTTGTTCTCTCTCTACAT 58.643 45.455 0.00 0.00 0.00 2.29
514 515 3.129462 TCGGCTTGTTCTCTCTCTACATG 59.871 47.826 0.00 0.00 0.00 3.21
515 516 3.119316 CGGCTTGTTCTCTCTCTACATGT 60.119 47.826 2.69 2.69 0.00 3.21
516 517 4.619394 CGGCTTGTTCTCTCTCTACATGTT 60.619 45.833 2.30 0.00 0.00 2.71
517 518 4.629200 GGCTTGTTCTCTCTCTACATGTTG 59.371 45.833 2.30 1.19 0.00 3.33
518 519 5.233988 GCTTGTTCTCTCTCTACATGTTGT 58.766 41.667 2.30 0.00 0.00 3.32
519 520 5.698545 GCTTGTTCTCTCTCTACATGTTGTT 59.301 40.000 2.30 0.00 0.00 2.83
520 521 6.203723 GCTTGTTCTCTCTCTACATGTTGTTT 59.796 38.462 2.30 0.00 0.00 2.83
521 522 7.385205 GCTTGTTCTCTCTCTACATGTTGTTTA 59.615 37.037 2.30 0.00 0.00 2.01
522 523 9.261180 CTTGTTCTCTCTCTACATGTTGTTTAA 57.739 33.333 2.30 0.00 0.00 1.52
523 524 9.607988 TTGTTCTCTCTCTACATGTTGTTTAAA 57.392 29.630 2.30 0.00 0.00 1.52
524 525 9.607988 TGTTCTCTCTCTACATGTTGTTTAAAA 57.392 29.630 2.30 0.00 0.00 1.52
527 528 9.778741 TCTCTCTCTACATGTTGTTTAAAATGT 57.221 29.630 2.30 8.03 44.81 2.71
547 548 7.790782 AATGTTTGTTACTAATCATTGGGGT 57.209 32.000 6.57 0.00 31.96 4.95
548 549 6.582677 TGTTTGTTACTAATCATTGGGGTG 57.417 37.500 0.00 0.00 0.00 4.61
549 550 5.047660 TGTTTGTTACTAATCATTGGGGTGC 60.048 40.000 0.00 0.00 0.00 5.01
550 551 3.626930 TGTTACTAATCATTGGGGTGCC 58.373 45.455 0.00 0.00 0.00 5.01
551 552 3.010696 TGTTACTAATCATTGGGGTGCCA 59.989 43.478 0.00 0.00 0.00 4.92
552 553 2.143876 ACTAATCATTGGGGTGCCAC 57.856 50.000 0.00 0.00 0.00 5.01
553 554 1.341976 ACTAATCATTGGGGTGCCACC 60.342 52.381 4.93 4.93 37.60 4.61
554 555 1.006813 TAATCATTGGGGTGCCACCT 58.993 50.000 14.71 0.00 38.64 4.00
555 556 0.116940 AATCATTGGGGTGCCACCTT 59.883 50.000 14.71 0.00 38.64 3.50
556 557 0.116940 ATCATTGGGGTGCCACCTTT 59.883 50.000 14.71 0.00 38.64 3.11
557 558 0.105246 TCATTGGGGTGCCACCTTTT 60.105 50.000 14.71 0.00 38.64 2.27
558 559 0.035176 CATTGGGGTGCCACCTTTTG 59.965 55.000 14.71 3.24 38.64 2.44
559 560 1.767654 ATTGGGGTGCCACCTTTTGC 61.768 55.000 14.71 0.00 38.64 3.68
560 561 3.625897 GGGGTGCCACCTTTTGCC 61.626 66.667 14.71 1.69 38.64 4.52
561 562 2.841988 GGGTGCCACCTTTTGCCA 60.842 61.111 14.71 0.00 38.64 4.92
562 563 2.439104 GGGTGCCACCTTTTGCCAA 61.439 57.895 14.71 0.00 38.64 4.52
563 564 1.524482 GGTGCCACCTTTTGCCAAA 59.476 52.632 6.63 0.00 34.73 3.28
564 565 0.107459 GGTGCCACCTTTTGCCAAAA 60.107 50.000 6.63 2.15 34.73 2.44
565 566 1.013596 GTGCCACCTTTTGCCAAAAC 58.986 50.000 0.00 0.00 0.00 2.43
566 567 0.908198 TGCCACCTTTTGCCAAAACT 59.092 45.000 0.00 0.00 0.00 2.66
567 568 2.111384 TGCCACCTTTTGCCAAAACTA 58.889 42.857 0.00 0.00 0.00 2.24
568 569 2.703007 TGCCACCTTTTGCCAAAACTAT 59.297 40.909 0.00 0.00 0.00 2.12
569 570 3.135530 TGCCACCTTTTGCCAAAACTATT 59.864 39.130 0.00 0.00 0.00 1.73
570 571 4.345257 TGCCACCTTTTGCCAAAACTATTA 59.655 37.500 0.00 0.00 0.00 0.98
571 572 5.012561 TGCCACCTTTTGCCAAAACTATTAT 59.987 36.000 0.00 0.00 0.00 1.28
572 573 5.937540 GCCACCTTTTGCCAAAACTATTATT 59.062 36.000 0.00 0.00 0.00 1.40
573 574 6.128309 GCCACCTTTTGCCAAAACTATTATTG 60.128 38.462 0.00 0.00 0.00 1.90
574 575 6.934083 CCACCTTTTGCCAAAACTATTATTGT 59.066 34.615 0.00 0.00 0.00 2.71
575 576 7.095271 CCACCTTTTGCCAAAACTATTATTGTG 60.095 37.037 0.00 0.00 0.00 3.33
576 577 7.655328 CACCTTTTGCCAAAACTATTATTGTGA 59.345 33.333 0.00 0.00 0.00 3.58
577 578 8.207545 ACCTTTTGCCAAAACTATTATTGTGAA 58.792 29.630 0.00 0.00 0.00 3.18
578 579 9.050601 CCTTTTGCCAAAACTATTATTGTGAAA 57.949 29.630 0.00 0.00 0.00 2.69
617 618 6.942532 TCTTTTTCCCATCGATTAATCTGG 57.057 37.500 13.45 13.85 0.00 3.86
618 619 6.658849 TCTTTTTCCCATCGATTAATCTGGA 58.341 36.000 20.21 14.02 0.00 3.86
619 620 7.116075 TCTTTTTCCCATCGATTAATCTGGAA 58.884 34.615 20.21 17.77 0.00 3.53
620 621 6.942532 TTTTCCCATCGATTAATCTGGAAG 57.057 37.500 20.21 8.67 32.48 3.46
822 825 2.093341 TGTCCGAGCCTAATACCAAACC 60.093 50.000 0.00 0.00 0.00 3.27
826 829 2.199236 GAGCCTAATACCAAACCGACG 58.801 52.381 0.00 0.00 0.00 5.12
848 851 3.309954 GTCGCACCAAATCCTAACATCTC 59.690 47.826 0.00 0.00 0.00 2.75
1215 1218 2.035442 GCAGTTCCTCCCAAGACGC 61.035 63.158 0.00 0.00 0.00 5.19
1683 1822 0.168788 CATCCACGCGTCAGCATTTT 59.831 50.000 9.86 0.00 45.49 1.82
1824 1984 2.227089 ATCTCCGTGCTTGGTCGACC 62.227 60.000 28.17 28.17 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 5.869753 ATATTGTGCGCTGGAATCTAATC 57.130 39.130 9.73 0.00 0.00 1.75
88 89 5.356751 ACAAATATTGTGCGCTGGAATCTAA 59.643 36.000 9.73 0.00 43.48 2.10
119 120 4.439289 GGGCATTGATAAGAGAAAGCACAC 60.439 45.833 0.00 0.00 0.00 3.82
124 125 7.549839 TGAATTTGGGCATTGATAAGAGAAAG 58.450 34.615 0.00 0.00 0.00 2.62
144 145 9.206690 TCCACTATGAGAAGATACTTCTGAATT 57.793 33.333 16.97 0.24 30.72 2.17
161 162 2.092968 GGTGCACTGGAATCCACTATGA 60.093 50.000 17.98 0.00 0.00 2.15
162 163 2.292267 GGTGCACTGGAATCCACTATG 58.708 52.381 17.98 0.00 0.00 2.23
163 164 1.915489 TGGTGCACTGGAATCCACTAT 59.085 47.619 17.98 0.00 0.00 2.12
165 166 0.700564 ATGGTGCACTGGAATCCACT 59.299 50.000 17.98 0.00 0.00 4.00
166 167 1.549203 AATGGTGCACTGGAATCCAC 58.451 50.000 17.98 0.00 0.00 4.02
167 168 2.307496 AAATGGTGCACTGGAATCCA 57.693 45.000 17.98 0.48 0.00 3.41
168 169 3.244181 ACAAAAATGGTGCACTGGAATCC 60.244 43.478 17.98 0.00 0.00 3.01
169 170 3.993920 ACAAAAATGGTGCACTGGAATC 58.006 40.909 17.98 0.00 0.00 2.52
170 171 4.128643 CAACAAAAATGGTGCACTGGAAT 58.871 39.130 17.98 3.00 0.00 3.01
171 172 3.055530 ACAACAAAAATGGTGCACTGGAA 60.056 39.130 17.98 0.44 0.00 3.53
172 173 2.499289 ACAACAAAAATGGTGCACTGGA 59.501 40.909 17.98 1.19 0.00 3.86
173 174 2.903798 ACAACAAAAATGGTGCACTGG 58.096 42.857 17.98 0.00 0.00 4.00
174 175 4.943142 AAACAACAAAAATGGTGCACTG 57.057 36.364 17.98 8.42 0.00 3.66
175 176 4.759183 ACAAAACAACAAAAATGGTGCACT 59.241 33.333 17.98 0.00 0.00 4.40
176 177 4.850470 CACAAAACAACAAAAATGGTGCAC 59.150 37.500 8.80 8.80 0.00 4.57
177 178 4.083110 CCACAAAACAACAAAAATGGTGCA 60.083 37.500 0.00 0.00 0.00 4.57
178 179 4.410448 CCACAAAACAACAAAAATGGTGC 58.590 39.130 0.00 0.00 0.00 5.01
179 180 4.457257 ACCCACAAAACAACAAAAATGGTG 59.543 37.500 0.00 0.00 0.00 4.17
180 181 4.657013 ACCCACAAAACAACAAAAATGGT 58.343 34.783 0.00 0.00 0.00 3.55
181 182 5.635417 AACCCACAAAACAACAAAAATGG 57.365 34.783 0.00 0.00 0.00 3.16
182 183 7.366513 AGAAAACCCACAAAACAACAAAAATG 58.633 30.769 0.00 0.00 0.00 2.32
183 184 7.308891 GGAGAAAACCCACAAAACAACAAAAAT 60.309 33.333 0.00 0.00 0.00 1.82
184 185 6.017026 GGAGAAAACCCACAAAACAACAAAAA 60.017 34.615 0.00 0.00 0.00 1.94
185 186 5.470437 GGAGAAAACCCACAAAACAACAAAA 59.530 36.000 0.00 0.00 0.00 2.44
186 187 4.998033 GGAGAAAACCCACAAAACAACAAA 59.002 37.500 0.00 0.00 0.00 2.83
187 188 4.284746 AGGAGAAAACCCACAAAACAACAA 59.715 37.500 0.00 0.00 0.00 2.83
188 189 3.835395 AGGAGAAAACCCACAAAACAACA 59.165 39.130 0.00 0.00 0.00 3.33
189 190 4.465632 AGGAGAAAACCCACAAAACAAC 57.534 40.909 0.00 0.00 0.00 3.32
190 191 4.775253 AGAAGGAGAAAACCCACAAAACAA 59.225 37.500 0.00 0.00 0.00 2.83
191 192 4.349365 AGAAGGAGAAAACCCACAAAACA 58.651 39.130 0.00 0.00 0.00 2.83
192 193 5.593095 AGTAGAAGGAGAAAACCCACAAAAC 59.407 40.000 0.00 0.00 0.00 2.43
193 194 5.762279 AGTAGAAGGAGAAAACCCACAAAA 58.238 37.500 0.00 0.00 0.00 2.44
194 195 5.382664 AGTAGAAGGAGAAAACCCACAAA 57.617 39.130 0.00 0.00 0.00 2.83
195 196 5.130350 CAAGTAGAAGGAGAAAACCCACAA 58.870 41.667 0.00 0.00 0.00 3.33
196 197 4.714632 CAAGTAGAAGGAGAAAACCCACA 58.285 43.478 0.00 0.00 0.00 4.17
197 198 3.502595 GCAAGTAGAAGGAGAAAACCCAC 59.497 47.826 0.00 0.00 0.00 4.61
198 199 3.137544 TGCAAGTAGAAGGAGAAAACCCA 59.862 43.478 0.00 0.00 0.00 4.51
199 200 3.502595 GTGCAAGTAGAAGGAGAAAACCC 59.497 47.826 0.00 0.00 0.00 4.11
200 201 4.390264 AGTGCAAGTAGAAGGAGAAAACC 58.610 43.478 0.00 0.00 0.00 3.27
201 202 7.441458 TCTTAAGTGCAAGTAGAAGGAGAAAAC 59.559 37.037 1.63 0.00 0.00 2.43
202 203 7.506114 TCTTAAGTGCAAGTAGAAGGAGAAAA 58.494 34.615 1.63 0.00 0.00 2.29
203 204 7.062749 TCTTAAGTGCAAGTAGAAGGAGAAA 57.937 36.000 1.63 0.00 0.00 2.52
204 205 6.665992 TCTTAAGTGCAAGTAGAAGGAGAA 57.334 37.500 1.63 0.00 0.00 2.87
205 206 6.859112 ATCTTAAGTGCAAGTAGAAGGAGA 57.141 37.500 1.63 0.00 0.00 3.71
206 207 6.876257 ACAATCTTAAGTGCAAGTAGAAGGAG 59.124 38.462 1.63 0.00 0.00 3.69
207 208 6.650807 CACAATCTTAAGTGCAAGTAGAAGGA 59.349 38.462 1.63 0.00 0.00 3.36
208 209 6.428159 ACACAATCTTAAGTGCAAGTAGAAGG 59.572 38.462 1.63 0.00 39.30 3.46
209 210 7.041780 ACACACAATCTTAAGTGCAAGTAGAAG 60.042 37.037 1.63 0.00 39.30 2.85
210 211 6.765989 ACACACAATCTTAAGTGCAAGTAGAA 59.234 34.615 1.63 0.00 39.30 2.10
211 212 6.288294 ACACACAATCTTAAGTGCAAGTAGA 58.712 36.000 1.63 0.00 39.30 2.59
212 213 6.545504 ACACACAATCTTAAGTGCAAGTAG 57.454 37.500 1.63 0.00 39.30 2.57
213 214 6.317642 ACAACACACAATCTTAAGTGCAAGTA 59.682 34.615 1.63 0.00 39.30 2.24
214 215 5.125417 ACAACACACAATCTTAAGTGCAAGT 59.875 36.000 1.63 0.00 39.30 3.16
215 216 5.456497 CACAACACACAATCTTAAGTGCAAG 59.544 40.000 1.63 0.00 39.30 4.01
216 217 5.105957 ACACAACACACAATCTTAAGTGCAA 60.106 36.000 1.63 0.00 39.30 4.08
217 218 4.397730 ACACAACACACAATCTTAAGTGCA 59.602 37.500 1.63 0.00 39.30 4.57
218 219 4.920376 ACACAACACACAATCTTAAGTGC 58.080 39.130 1.63 0.00 39.30 4.40
219 220 7.965655 TGTAAACACAACACACAATCTTAAGTG 59.034 33.333 1.63 0.00 41.40 3.16
220 221 8.046294 TGTAAACACAACACACAATCTTAAGT 57.954 30.769 1.63 0.00 0.00 2.24
221 222 7.643764 CCTGTAAACACAACACACAATCTTAAG 59.356 37.037 0.00 0.00 0.00 1.85
222 223 7.121463 ACCTGTAAACACAACACACAATCTTAA 59.879 33.333 0.00 0.00 0.00 1.85
223 224 6.600032 ACCTGTAAACACAACACACAATCTTA 59.400 34.615 0.00 0.00 0.00 2.10
224 225 5.417580 ACCTGTAAACACAACACACAATCTT 59.582 36.000 0.00 0.00 0.00 2.40
225 226 4.947388 ACCTGTAAACACAACACACAATCT 59.053 37.500 0.00 0.00 0.00 2.40
226 227 5.243426 ACCTGTAAACACAACACACAATC 57.757 39.130 0.00 0.00 0.00 2.67
227 228 5.652994 AACCTGTAAACACAACACACAAT 57.347 34.783 0.00 0.00 0.00 2.71
228 229 5.455056 AAACCTGTAAACACAACACACAA 57.545 34.783 0.00 0.00 0.00 3.33
229 230 5.223382 CAAAACCTGTAAACACAACACACA 58.777 37.500 0.00 0.00 0.00 3.72
230 231 4.090786 GCAAAACCTGTAAACACAACACAC 59.909 41.667 0.00 0.00 0.00 3.82
231 232 4.021894 AGCAAAACCTGTAAACACAACACA 60.022 37.500 0.00 0.00 0.00 3.72
232 233 4.326009 CAGCAAAACCTGTAAACACAACAC 59.674 41.667 0.00 0.00 0.00 3.32
233 234 4.021894 ACAGCAAAACCTGTAAACACAACA 60.022 37.500 0.00 0.00 43.86 3.33
234 235 4.326009 CACAGCAAAACCTGTAAACACAAC 59.674 41.667 0.00 0.00 43.85 3.32
235 236 4.218635 TCACAGCAAAACCTGTAAACACAA 59.781 37.500 0.00 0.00 43.85 3.33
236 237 3.759086 TCACAGCAAAACCTGTAAACACA 59.241 39.130 0.00 0.00 43.85 3.72
237 238 4.364415 TCACAGCAAAACCTGTAAACAC 57.636 40.909 0.00 0.00 43.85 3.32
238 239 5.347342 CAATCACAGCAAAACCTGTAAACA 58.653 37.500 0.00 0.00 43.85 2.83
239 240 4.744631 CCAATCACAGCAAAACCTGTAAAC 59.255 41.667 0.00 0.00 43.85 2.01
240 241 4.404073 ACCAATCACAGCAAAACCTGTAAA 59.596 37.500 0.00 0.00 43.85 2.01
241 242 3.957497 ACCAATCACAGCAAAACCTGTAA 59.043 39.130 0.00 0.00 43.85 2.41
242 243 3.561143 ACCAATCACAGCAAAACCTGTA 58.439 40.909 0.00 0.00 43.85 2.74
243 244 2.362077 GACCAATCACAGCAAAACCTGT 59.638 45.455 0.00 0.00 46.47 4.00
244 245 2.288395 GGACCAATCACAGCAAAACCTG 60.288 50.000 0.00 0.00 38.78 4.00
245 246 1.963515 GGACCAATCACAGCAAAACCT 59.036 47.619 0.00 0.00 0.00 3.50
246 247 1.963515 AGGACCAATCACAGCAAAACC 59.036 47.619 0.00 0.00 0.00 3.27
247 248 3.552890 GGAAGGACCAATCACAGCAAAAC 60.553 47.826 0.00 0.00 38.79 2.43
248 249 2.627699 GGAAGGACCAATCACAGCAAAA 59.372 45.455 0.00 0.00 38.79 2.44
249 250 2.238521 GGAAGGACCAATCACAGCAAA 58.761 47.619 0.00 0.00 38.79 3.68
250 251 1.881925 CGGAAGGACCAATCACAGCAA 60.882 52.381 0.00 0.00 38.90 3.91
251 252 0.321564 CGGAAGGACCAATCACAGCA 60.322 55.000 0.00 0.00 38.90 4.41
252 253 2.471255 CGGAAGGACCAATCACAGC 58.529 57.895 0.00 0.00 38.90 4.40
265 266 2.510906 CCCTATGTGCCCCGGAAG 59.489 66.667 0.73 0.00 0.00 3.46
266 267 3.804329 GCCCTATGTGCCCCGGAA 61.804 66.667 0.73 0.00 0.00 4.30
267 268 4.815973 AGCCCTATGTGCCCCGGA 62.816 66.667 0.73 0.00 0.00 5.14
268 269 4.256180 GAGCCCTATGTGCCCCGG 62.256 72.222 0.00 0.00 0.00 5.73
269 270 3.479203 TGAGCCCTATGTGCCCCG 61.479 66.667 0.00 0.00 0.00 5.73
270 271 2.193248 GTGAGCCCTATGTGCCCC 59.807 66.667 0.00 0.00 0.00 5.80
271 272 1.147153 GAGTGAGCCCTATGTGCCC 59.853 63.158 0.00 0.00 0.00 5.36
272 273 0.179062 CTGAGTGAGCCCTATGTGCC 60.179 60.000 0.00 0.00 0.00 5.01
273 274 0.813210 GCTGAGTGAGCCCTATGTGC 60.813 60.000 0.00 0.00 42.54 4.57
274 275 3.376218 GCTGAGTGAGCCCTATGTG 57.624 57.895 0.00 0.00 42.54 3.21
283 284 2.166821 AGCAGAACAAGCTGAGTGAG 57.833 50.000 0.00 0.00 41.61 3.51
290 291 2.283145 ACAATCCAGCAGAACAAGCT 57.717 45.000 0.00 0.00 44.62 3.74
291 292 2.352127 GGAACAATCCAGCAGAACAAGC 60.352 50.000 0.00 0.00 45.79 4.01
292 293 3.565905 GGAACAATCCAGCAGAACAAG 57.434 47.619 0.00 0.00 45.79 3.16
312 313 4.238761 TCGAGCATAGGATTTACCGAAG 57.761 45.455 0.00 0.00 44.74 3.79
313 314 4.279922 TGATCGAGCATAGGATTTACCGAA 59.720 41.667 0.00 0.00 44.74 4.30
314 315 3.824443 TGATCGAGCATAGGATTTACCGA 59.176 43.478 0.00 0.00 44.74 4.69
315 316 4.169508 CTGATCGAGCATAGGATTTACCG 58.830 47.826 2.72 0.00 44.74 4.02
329 330 3.181513 CCACTTGTCAAATGCTGATCGAG 60.182 47.826 0.00 0.00 36.14 4.04
330 331 2.743664 CCACTTGTCAAATGCTGATCGA 59.256 45.455 0.00 0.00 36.14 3.59
331 332 2.730090 GCCACTTGTCAAATGCTGATCG 60.730 50.000 0.00 0.00 36.14 3.69
332 333 2.229543 TGCCACTTGTCAAATGCTGATC 59.770 45.455 0.00 0.00 36.14 2.92
333 334 2.230508 CTGCCACTTGTCAAATGCTGAT 59.769 45.455 0.00 0.00 36.14 2.90
334 335 1.610038 CTGCCACTTGTCAAATGCTGA 59.390 47.619 0.00 0.00 0.00 4.26
335 336 1.933500 GCTGCCACTTGTCAAATGCTG 60.934 52.381 0.00 0.00 0.00 4.41
336 337 0.316204 GCTGCCACTTGTCAAATGCT 59.684 50.000 0.00 0.00 0.00 3.79
337 338 0.316204 AGCTGCCACTTGTCAAATGC 59.684 50.000 0.00 0.00 0.00 3.56
338 339 2.816087 AGTAGCTGCCACTTGTCAAATG 59.184 45.455 0.00 0.00 0.00 2.32
339 340 3.146104 AGTAGCTGCCACTTGTCAAAT 57.854 42.857 0.00 0.00 0.00 2.32
340 341 2.618241 CAAGTAGCTGCCACTTGTCAAA 59.382 45.455 25.99 0.00 45.06 2.69
341 342 2.221169 CAAGTAGCTGCCACTTGTCAA 58.779 47.619 25.99 0.00 45.06 3.18
342 343 1.882912 CAAGTAGCTGCCACTTGTCA 58.117 50.000 25.99 0.00 45.06 3.58
346 347 1.421646 AGTTCCAAGTAGCTGCCACTT 59.578 47.619 7.66 7.66 36.68 3.16
347 348 1.059913 AGTTCCAAGTAGCTGCCACT 58.940 50.000 0.00 0.00 0.00 4.00
348 349 1.807142 GAAGTTCCAAGTAGCTGCCAC 59.193 52.381 0.00 0.00 0.00 5.01
349 350 1.271379 GGAAGTTCCAAGTAGCTGCCA 60.271 52.381 17.44 0.00 36.28 4.92
350 351 1.271379 TGGAAGTTCCAAGTAGCTGCC 60.271 52.381 22.59 0.00 45.00 4.85
351 352 2.185004 TGGAAGTTCCAAGTAGCTGC 57.815 50.000 22.59 0.00 45.00 5.25
365 366 3.551846 ACTGTACCACCAAAACTGGAAG 58.448 45.455 0.00 0.00 42.29 3.46
366 367 3.655615 ACTGTACCACCAAAACTGGAA 57.344 42.857 0.00 0.00 32.55 3.53
367 368 3.054287 TCAACTGTACCACCAAAACTGGA 60.054 43.478 0.00 0.00 32.55 3.86
368 369 3.283751 TCAACTGTACCACCAAAACTGG 58.716 45.455 0.00 0.00 34.62 4.00
369 370 4.023193 GGATCAACTGTACCACCAAAACTG 60.023 45.833 0.00 0.00 0.00 3.16
370 371 4.141251 AGGATCAACTGTACCACCAAAACT 60.141 41.667 0.00 0.00 0.00 2.66
371 372 4.142038 AGGATCAACTGTACCACCAAAAC 58.858 43.478 0.00 0.00 0.00 2.43
372 373 4.447138 AGGATCAACTGTACCACCAAAA 57.553 40.909 0.00 0.00 0.00 2.44
373 374 4.447138 AAGGATCAACTGTACCACCAAA 57.553 40.909 0.00 0.00 0.00 3.28
374 375 4.447138 AAAGGATCAACTGTACCACCAA 57.553 40.909 0.00 0.00 0.00 3.67
375 376 4.447138 AAAAGGATCAACTGTACCACCA 57.553 40.909 0.00 0.00 0.00 4.17
376 377 5.070685 AGAAAAAGGATCAACTGTACCACC 58.929 41.667 0.00 0.00 0.00 4.61
377 378 6.635030 AAGAAAAAGGATCAACTGTACCAC 57.365 37.500 0.00 0.00 0.00 4.16
378 379 8.934023 AATAAGAAAAAGGATCAACTGTACCA 57.066 30.769 0.00 0.00 0.00 3.25
382 383 9.147732 AGGAAAATAAGAAAAAGGATCAACTGT 57.852 29.630 0.00 0.00 0.00 3.55
383 384 9.987272 AAGGAAAATAAGAAAAAGGATCAACTG 57.013 29.630 0.00 0.00 0.00 3.16
399 400 9.784531 TGCCAAACAATGAATTAAGGAAAATAA 57.215 25.926 0.00 0.00 0.00 1.40
400 401 9.784531 TTGCCAAACAATGAATTAAGGAAAATA 57.215 25.926 0.00 0.00 31.73 1.40
401 402 8.688747 TTGCCAAACAATGAATTAAGGAAAAT 57.311 26.923 0.00 0.00 31.73 1.82
402 403 7.772757 ACTTGCCAAACAATGAATTAAGGAAAA 59.227 29.630 0.00 0.00 37.72 2.29
403 404 7.278875 ACTTGCCAAACAATGAATTAAGGAAA 58.721 30.769 0.00 0.00 37.72 3.13
404 405 6.825610 ACTTGCCAAACAATGAATTAAGGAA 58.174 32.000 0.00 0.00 37.72 3.36
405 406 6.418057 ACTTGCCAAACAATGAATTAAGGA 57.582 33.333 0.00 0.00 37.72 3.36
406 407 7.655328 TGTTACTTGCCAAACAATGAATTAAGG 59.345 33.333 0.00 0.00 37.72 2.69
407 408 8.586570 TGTTACTTGCCAAACAATGAATTAAG 57.413 30.769 0.00 0.00 37.72 1.85
408 409 9.202273 GATGTTACTTGCCAAACAATGAATTAA 57.798 29.630 0.00 0.00 38.95 1.40
409 410 8.584157 AGATGTTACTTGCCAAACAATGAATTA 58.416 29.630 0.00 0.00 38.95 1.40
410 411 7.385752 CAGATGTTACTTGCCAAACAATGAATT 59.614 33.333 0.00 0.00 38.95 2.17
411 412 6.869913 CAGATGTTACTTGCCAAACAATGAAT 59.130 34.615 0.00 0.00 38.95 2.57
412 413 6.215121 CAGATGTTACTTGCCAAACAATGAA 58.785 36.000 0.00 0.00 38.95 2.57
413 414 5.771469 CAGATGTTACTTGCCAAACAATGA 58.229 37.500 0.00 0.00 38.95 2.57
414 415 4.386652 GCAGATGTTACTTGCCAAACAATG 59.613 41.667 0.00 0.00 38.95 2.82
415 416 4.281688 AGCAGATGTTACTTGCCAAACAAT 59.718 37.500 4.15 0.00 38.95 2.71
416 417 3.636300 AGCAGATGTTACTTGCCAAACAA 59.364 39.130 4.15 0.00 38.95 2.83
417 418 3.221771 AGCAGATGTTACTTGCCAAACA 58.778 40.909 4.15 0.00 39.73 2.83
418 419 3.253188 TGAGCAGATGTTACTTGCCAAAC 59.747 43.478 4.15 0.00 0.00 2.93
419 420 3.253188 GTGAGCAGATGTTACTTGCCAAA 59.747 43.478 4.15 0.00 0.00 3.28
420 421 2.813754 GTGAGCAGATGTTACTTGCCAA 59.186 45.455 4.15 0.00 0.00 4.52
421 422 2.426522 GTGAGCAGATGTTACTTGCCA 58.573 47.619 4.15 1.11 0.00 4.92
422 423 1.740025 GGTGAGCAGATGTTACTTGCC 59.260 52.381 4.15 0.00 0.00 4.52
423 424 2.426522 TGGTGAGCAGATGTTACTTGC 58.573 47.619 0.00 0.35 0.00 4.01
424 425 4.005650 ACATGGTGAGCAGATGTTACTTG 58.994 43.478 0.00 0.00 0.00 3.16
425 426 4.292186 ACATGGTGAGCAGATGTTACTT 57.708 40.909 0.00 0.00 0.00 2.24
426 427 3.988976 ACATGGTGAGCAGATGTTACT 57.011 42.857 0.00 0.00 0.00 2.24
427 428 4.002982 TCAACATGGTGAGCAGATGTTAC 58.997 43.478 10.05 0.00 38.06 2.50
428 429 4.284829 TCAACATGGTGAGCAGATGTTA 57.715 40.909 10.05 0.00 38.06 2.41
429 430 3.144657 TCAACATGGTGAGCAGATGTT 57.855 42.857 10.05 0.00 40.20 2.71
430 431 2.865119 TCAACATGGTGAGCAGATGT 57.135 45.000 10.05 0.00 31.54 3.06
431 432 3.181490 CCAATCAACATGGTGAGCAGATG 60.181 47.826 19.98 11.88 33.08 2.90
432 433 3.021695 CCAATCAACATGGTGAGCAGAT 58.978 45.455 19.98 0.00 33.08 2.90
433 434 2.040145 TCCAATCAACATGGTGAGCAGA 59.960 45.455 19.98 11.94 39.09 4.26
434 435 2.439409 TCCAATCAACATGGTGAGCAG 58.561 47.619 19.98 10.83 39.09 4.24
435 436 2.583024 TCCAATCAACATGGTGAGCA 57.417 45.000 19.98 0.00 39.09 4.26
436 437 4.082081 TCAATTCCAATCAACATGGTGAGC 60.082 41.667 19.98 0.00 39.09 4.26
437 438 5.404946 GTCAATTCCAATCAACATGGTGAG 58.595 41.667 19.98 6.30 39.09 3.51
438 439 4.082841 CGTCAATTCCAATCAACATGGTGA 60.083 41.667 17.41 17.41 39.09 4.02
439 440 4.082841 TCGTCAATTCCAATCAACATGGTG 60.083 41.667 3.69 3.69 39.09 4.17
440 441 4.078537 TCGTCAATTCCAATCAACATGGT 58.921 39.130 0.00 0.00 39.09 3.55
441 442 4.665212 CTCGTCAATTCCAATCAACATGG 58.335 43.478 0.00 0.00 39.41 3.66
442 443 4.100529 GCTCGTCAATTCCAATCAACATG 58.899 43.478 0.00 0.00 0.00 3.21
443 444 4.012374 AGCTCGTCAATTCCAATCAACAT 58.988 39.130 0.00 0.00 0.00 2.71
444 445 3.189080 CAGCTCGTCAATTCCAATCAACA 59.811 43.478 0.00 0.00 0.00 3.33
445 446 3.436704 TCAGCTCGTCAATTCCAATCAAC 59.563 43.478 0.00 0.00 0.00 3.18
446 447 3.673902 TCAGCTCGTCAATTCCAATCAA 58.326 40.909 0.00 0.00 0.00 2.57
447 448 3.333029 TCAGCTCGTCAATTCCAATCA 57.667 42.857 0.00 0.00 0.00 2.57
448 449 3.873361 TCATCAGCTCGTCAATTCCAATC 59.127 43.478 0.00 0.00 0.00 2.67
449 450 3.877559 TCATCAGCTCGTCAATTCCAAT 58.122 40.909 0.00 0.00 0.00 3.16
450 451 3.333029 TCATCAGCTCGTCAATTCCAA 57.667 42.857 0.00 0.00 0.00 3.53
451 452 3.055891 TCTTCATCAGCTCGTCAATTCCA 60.056 43.478 0.00 0.00 0.00 3.53
452 453 3.525537 TCTTCATCAGCTCGTCAATTCC 58.474 45.455 0.00 0.00 0.00 3.01
453 454 8.593842 CATATATCTTCATCAGCTCGTCAATTC 58.406 37.037 0.00 0.00 0.00 2.17
454 455 7.064371 GCATATATCTTCATCAGCTCGTCAATT 59.936 37.037 0.00 0.00 0.00 2.32
455 456 6.534436 GCATATATCTTCATCAGCTCGTCAAT 59.466 38.462 0.00 0.00 0.00 2.57
456 457 5.866092 GCATATATCTTCATCAGCTCGTCAA 59.134 40.000 0.00 0.00 0.00 3.18
457 458 5.047802 TGCATATATCTTCATCAGCTCGTCA 60.048 40.000 0.00 0.00 0.00 4.35
458 459 5.405797 TGCATATATCTTCATCAGCTCGTC 58.594 41.667 0.00 0.00 0.00 4.20
459 460 5.397142 TGCATATATCTTCATCAGCTCGT 57.603 39.130 0.00 0.00 0.00 4.18
460 461 6.905544 ATTGCATATATCTTCATCAGCTCG 57.094 37.500 0.00 0.00 0.00 5.03
461 462 7.336176 TCCAATTGCATATATCTTCATCAGCTC 59.664 37.037 0.00 0.00 0.00 4.09
462 463 7.173032 TCCAATTGCATATATCTTCATCAGCT 58.827 34.615 0.00 0.00 0.00 4.24
463 464 7.387119 TCCAATTGCATATATCTTCATCAGC 57.613 36.000 0.00 0.00 0.00 4.26
465 466 9.523168 TGATTCCAATTGCATATATCTTCATCA 57.477 29.630 0.00 0.00 0.00 3.07
468 469 8.671028 CGATGATTCCAATTGCATATATCTTCA 58.329 33.333 0.00 0.00 0.00 3.02
469 470 8.127327 CCGATGATTCCAATTGCATATATCTTC 58.873 37.037 0.00 5.10 0.00 2.87
470 471 7.415989 GCCGATGATTCCAATTGCATATATCTT 60.416 37.037 0.00 0.00 0.00 2.40
471 472 6.039047 GCCGATGATTCCAATTGCATATATCT 59.961 38.462 0.00 0.00 0.00 1.98
472 473 6.039047 AGCCGATGATTCCAATTGCATATATC 59.961 38.462 0.00 0.68 0.00 1.63
473 474 5.889853 AGCCGATGATTCCAATTGCATATAT 59.110 36.000 0.00 0.00 0.00 0.86
474 475 5.255687 AGCCGATGATTCCAATTGCATATA 58.744 37.500 0.00 0.00 0.00 0.86
475 476 4.084287 AGCCGATGATTCCAATTGCATAT 58.916 39.130 0.00 0.00 0.00 1.78
476 477 3.489355 AGCCGATGATTCCAATTGCATA 58.511 40.909 0.00 0.00 0.00 3.14
477 478 2.313317 AGCCGATGATTCCAATTGCAT 58.687 42.857 0.00 0.00 0.00 3.96
478 479 1.766494 AGCCGATGATTCCAATTGCA 58.234 45.000 0.00 0.00 0.00 4.08
479 480 2.159198 ACAAGCCGATGATTCCAATTGC 60.159 45.455 0.00 0.00 0.00 3.56
480 481 3.788333 ACAAGCCGATGATTCCAATTG 57.212 42.857 0.00 0.00 0.00 2.32
481 482 4.019174 AGAACAAGCCGATGATTCCAATT 58.981 39.130 0.00 0.00 0.00 2.32
482 483 3.624777 AGAACAAGCCGATGATTCCAAT 58.375 40.909 0.00 0.00 0.00 3.16
483 484 3.009723 GAGAACAAGCCGATGATTCCAA 58.990 45.455 0.00 0.00 0.00 3.53
484 485 2.237143 AGAGAACAAGCCGATGATTCCA 59.763 45.455 0.00 0.00 0.00 3.53
485 486 2.869192 GAGAGAACAAGCCGATGATTCC 59.131 50.000 0.00 0.00 0.00 3.01
486 487 3.791245 AGAGAGAACAAGCCGATGATTC 58.209 45.455 0.00 0.00 0.00 2.52
487 488 3.450457 AGAGAGAGAACAAGCCGATGATT 59.550 43.478 0.00 0.00 0.00 2.57
488 489 3.030291 AGAGAGAGAACAAGCCGATGAT 58.970 45.455 0.00 0.00 0.00 2.45
489 490 2.451490 AGAGAGAGAACAAGCCGATGA 58.549 47.619 0.00 0.00 0.00 2.92
490 491 2.957491 AGAGAGAGAACAAGCCGATG 57.043 50.000 0.00 0.00 0.00 3.84
491 492 3.357203 TGTAGAGAGAGAACAAGCCGAT 58.643 45.455 0.00 0.00 0.00 4.18
492 493 2.791655 TGTAGAGAGAGAACAAGCCGA 58.208 47.619 0.00 0.00 0.00 5.54
493 494 3.119316 ACATGTAGAGAGAGAACAAGCCG 60.119 47.826 0.00 0.00 0.00 5.52
494 495 4.464069 ACATGTAGAGAGAGAACAAGCC 57.536 45.455 0.00 0.00 0.00 4.35
495 496 5.233988 ACAACATGTAGAGAGAGAACAAGC 58.766 41.667 0.00 0.00 0.00 4.01
496 497 7.721286 AAACAACATGTAGAGAGAGAACAAG 57.279 36.000 0.00 0.00 0.00 3.16
497 498 9.607988 TTTAAACAACATGTAGAGAGAGAACAA 57.392 29.630 0.00 0.00 0.00 2.83
498 499 9.607988 TTTTAAACAACATGTAGAGAGAGAACA 57.392 29.630 0.00 0.00 0.00 3.18
501 502 9.778741 ACATTTTAAACAACATGTAGAGAGAGA 57.221 29.630 0.00 0.00 0.00 3.10
521 522 8.655901 ACCCCAATGATTAGTAACAAACATTTT 58.344 29.630 0.00 0.00 0.00 1.82
522 523 8.093927 CACCCCAATGATTAGTAACAAACATTT 58.906 33.333 0.00 0.00 0.00 2.32
523 524 7.610865 CACCCCAATGATTAGTAACAAACATT 58.389 34.615 0.00 0.00 0.00 2.71
524 525 6.350949 GCACCCCAATGATTAGTAACAAACAT 60.351 38.462 0.00 0.00 0.00 2.71
525 526 5.047660 GCACCCCAATGATTAGTAACAAACA 60.048 40.000 0.00 0.00 0.00 2.83
526 527 5.407502 GCACCCCAATGATTAGTAACAAAC 58.592 41.667 0.00 0.00 0.00 2.93
527 528 4.464597 GGCACCCCAATGATTAGTAACAAA 59.535 41.667 0.00 0.00 0.00 2.83
528 529 4.020543 GGCACCCCAATGATTAGTAACAA 58.979 43.478 0.00 0.00 0.00 2.83
529 530 3.010696 TGGCACCCCAATGATTAGTAACA 59.989 43.478 0.00 0.00 38.46 2.41
530 531 3.380320 GTGGCACCCCAATGATTAGTAAC 59.620 47.826 6.29 0.00 44.33 2.50
531 532 3.626222 GGTGGCACCCCAATGATTAGTAA 60.626 47.826 26.51 0.00 44.33 2.24
532 533 2.092103 GGTGGCACCCCAATGATTAGTA 60.092 50.000 26.51 0.00 44.33 1.82
533 534 1.341976 GGTGGCACCCCAATGATTAGT 60.342 52.381 26.51 0.00 44.33 2.24
534 535 1.063717 AGGTGGCACCCCAATGATTAG 60.064 52.381 32.30 0.00 44.33 1.73
535 536 1.006813 AGGTGGCACCCCAATGATTA 58.993 50.000 32.30 0.00 44.33 1.75
536 537 0.116940 AAGGTGGCACCCCAATGATT 59.883 50.000 32.30 15.72 44.33 2.57
537 538 0.116940 AAAGGTGGCACCCCAATGAT 59.883 50.000 32.30 9.94 44.33 2.45
538 539 0.105246 AAAAGGTGGCACCCCAATGA 60.105 50.000 32.30 0.00 44.33 2.57
539 540 0.035176 CAAAAGGTGGCACCCCAATG 59.965 55.000 32.30 21.31 44.33 2.82
540 541 1.767654 GCAAAAGGTGGCACCCCAAT 61.768 55.000 32.30 11.99 44.33 3.16
541 542 2.439104 GCAAAAGGTGGCACCCCAA 61.439 57.895 32.30 0.00 44.33 4.12
542 543 2.841988 GCAAAAGGTGGCACCCCA 60.842 61.111 32.30 0.00 39.75 4.96
549 550 6.934083 ACAATAATAGTTTTGGCAAAAGGTGG 59.066 34.615 24.69 11.67 0.00 4.61
550 551 7.655328 TCACAATAATAGTTTTGGCAAAAGGTG 59.345 33.333 24.69 19.17 0.00 4.00
551 552 7.731054 TCACAATAATAGTTTTGGCAAAAGGT 58.269 30.769 24.69 17.12 0.00 3.50
552 553 8.600449 TTCACAATAATAGTTTTGGCAAAAGG 57.400 30.769 24.69 9.87 0.00 3.11
591 592 8.416329 CCAGATTAATCGATGGGAAAAAGAATT 58.584 33.333 13.55 0.00 0.00 2.17
592 593 7.779798 TCCAGATTAATCGATGGGAAAAAGAAT 59.220 33.333 18.76 0.00 33.45 2.40
593 594 7.116075 TCCAGATTAATCGATGGGAAAAAGAA 58.884 34.615 18.76 0.61 33.45 2.52
594 595 6.658849 TCCAGATTAATCGATGGGAAAAAGA 58.341 36.000 18.76 1.18 33.45 2.52
595 596 6.942532 TCCAGATTAATCGATGGGAAAAAG 57.057 37.500 18.76 0.00 33.45 2.27
596 597 7.116075 TCTTCCAGATTAATCGATGGGAAAAA 58.884 34.615 22.50 15.82 32.02 1.94
597 598 6.658849 TCTTCCAGATTAATCGATGGGAAAA 58.341 36.000 22.50 14.29 32.02 2.29
598 599 6.247229 TCTTCCAGATTAATCGATGGGAAA 57.753 37.500 22.50 12.60 32.02 3.13
599 600 5.887214 TCTTCCAGATTAATCGATGGGAA 57.113 39.130 21.68 21.68 33.45 3.97
600 601 5.280164 CCATCTTCCAGATTAATCGATGGGA 60.280 44.000 26.26 20.47 41.52 4.37
601 602 4.940046 CCATCTTCCAGATTAATCGATGGG 59.060 45.833 26.26 19.12 41.52 4.00
602 603 4.394300 GCCATCTTCCAGATTAATCGATGG 59.606 45.833 27.97 27.97 45.64 3.51
603 604 5.243981 AGCCATCTTCCAGATTAATCGATG 58.756 41.667 16.98 16.98 31.32 3.84
604 605 5.495926 AGCCATCTTCCAGATTAATCGAT 57.504 39.130 9.78 0.00 31.32 3.59
605 606 4.963318 AGCCATCTTCCAGATTAATCGA 57.037 40.909 9.78 1.49 31.32 3.59
606 607 4.818546 ACAAGCCATCTTCCAGATTAATCG 59.181 41.667 9.78 5.27 31.32 3.34
607 608 6.705863 AACAAGCCATCTTCCAGATTAATC 57.294 37.500 7.41 7.41 31.32 1.75
608 609 7.486407 AAAACAAGCCATCTTCCAGATTAAT 57.514 32.000 0.00 0.00 31.32 1.40
609 610 6.916360 AAAACAAGCCATCTTCCAGATTAA 57.084 33.333 0.00 0.00 31.32 1.40
610 611 6.916360 AAAAACAAGCCATCTTCCAGATTA 57.084 33.333 0.00 0.00 31.32 1.75
611 612 5.813513 AAAAACAAGCCATCTTCCAGATT 57.186 34.783 0.00 0.00 31.32 2.40
736 739 0.471617 CCTAGATGGTGGCTTCAGGG 59.528 60.000 0.00 0.00 0.00 4.45
822 825 0.457166 TAGGATTTGGTGCGACGTCG 60.457 55.000 32.57 32.57 43.27 5.12
826 829 3.270877 AGATGTTAGGATTTGGTGCGAC 58.729 45.455 0.00 0.00 0.00 5.19
926 929 1.486726 GATGGATCGGTGGAAGAAGGT 59.513 52.381 0.00 0.00 0.00 3.50
1126 1129 1.302511 GCGATGGTGTGGAGGTTGT 60.303 57.895 0.00 0.00 0.00 3.32
1683 1822 2.463047 AACAAAAACCCCAGCCACTA 57.537 45.000 0.00 0.00 0.00 2.74
1719 1862 1.384643 CCAAAACCCCCAACCCCAA 60.385 57.895 0.00 0.00 0.00 4.12
1720 1863 2.287251 CCAAAACCCCCAACCCCA 59.713 61.111 0.00 0.00 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.