Multiple sequence alignment - TraesCS3D01G490600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G490600 chr3D 100.000 2787 0 0 1 2787 584594525 584591739 0.000000e+00 5147.0
1 TraesCS3D01G490600 chr3D 88.518 1707 122 38 459 2120 584353127 584351450 0.000000e+00 1999.0
2 TraesCS3D01G490600 chr3D 96.237 877 27 4 1 871 584442074 584441198 0.000000e+00 1432.0
3 TraesCS3D01G490600 chr3D 90.608 905 59 12 1223 2120 584344081 584343196 0.000000e+00 1177.0
4 TraesCS3D01G490600 chr3D 93.865 652 17 6 866 1500 584423408 584422763 0.000000e+00 961.0
5 TraesCS3D01G490600 chr3D 89.648 483 40 7 2309 2787 584415014 584414538 8.540000e-170 606.0
6 TraesCS3D01G490600 chr3D 93.072 332 22 1 1571 1902 584422467 584422137 4.170000e-133 484.0
7 TraesCS3D01G490600 chr3D 84.472 483 60 9 1 468 584365740 584365258 1.960000e-126 462.0
8 TraesCS3D01G490600 chr3D 84.399 391 54 5 787 1171 584344493 584344104 7.290000e-101 377.0
9 TraesCS3D01G490600 chr3D 88.125 320 21 9 481 790 584349913 584349601 5.670000e-97 364.0
10 TraesCS3D01G490600 chr3D 75.539 789 157 25 1008 1786 584456801 584456039 3.410000e-94 355.0
11 TraesCS3D01G490600 chr3D 86.691 278 23 4 407 681 584345671 584345405 2.100000e-76 296.0
12 TraesCS3D01G490600 chr3D 83.686 331 34 13 2473 2787 584413390 584413064 7.550000e-76 294.0
13 TraesCS3D01G490600 chr3D 86.900 229 23 6 1932 2160 584422048 584421827 1.660000e-62 250.0
14 TraesCS3D01G490600 chr3D 89.881 168 12 2 2147 2312 584415313 584415149 7.820000e-51 211.0
15 TraesCS3D01G490600 chr3D 95.968 124 5 0 927 1050 584349544 584349421 4.710000e-48 202.0
16 TraesCS3D01G490600 chr3B 86.770 1935 150 53 1 1863 781472093 781470193 0.000000e+00 2058.0
17 TraesCS3D01G490600 chr3B 75.544 781 151 23 1008 1786 781210604 781211346 5.710000e-92 348.0
18 TraesCS3D01G490600 chr6B 87.356 87 8 1 1028 1114 692574485 692574568 2.280000e-16 97.1
19 TraesCS3D01G490600 chr6D 86.905 84 8 2 1031 1114 454996491 454996411 1.060000e-14 91.6
20 TraesCS3D01G490600 chr6A 87.059 85 6 3 1031 1114 601264642 601264562 1.060000e-14 91.6
21 TraesCS3D01G490600 chr6A 86.207 87 9 2 1028 1114 602075660 602075743 1.060000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G490600 chr3D 584591739 584594525 2786 True 5147.000000 5147 100.000000 1 2787 1 chr3D.!!$R4 2786
1 TraesCS3D01G490600 chr3D 584441198 584442074 876 True 1432.000000 1432 96.237000 1 871 1 chr3D.!!$R2 870
2 TraesCS3D01G490600 chr3D 584343196 584353127 9931 True 735.833333 1999 89.051500 407 2120 6 chr3D.!!$R5 1713
3 TraesCS3D01G490600 chr3D 584421827 584423408 1581 True 565.000000 961 91.279000 866 2160 3 chr3D.!!$R7 1294
4 TraesCS3D01G490600 chr3D 584413064 584415313 2249 True 370.333333 606 87.738333 2147 2787 3 chr3D.!!$R6 640
5 TraesCS3D01G490600 chr3D 584456039 584456801 762 True 355.000000 355 75.539000 1008 1786 1 chr3D.!!$R3 778
6 TraesCS3D01G490600 chr3B 781470193 781472093 1900 True 2058.000000 2058 86.770000 1 1863 1 chr3B.!!$R1 1862
7 TraesCS3D01G490600 chr3B 781210604 781211346 742 False 348.000000 348 75.544000 1008 1786 1 chr3B.!!$F1 778

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
134 137 0.314302 GCTCGCCTATGGTGTATCGT 59.686 55.0 0.00 0.0 34.40 3.73 F
1223 9596 0.516439 TGCATGCGTGTGTGTATGTG 59.484 50.0 14.09 0.0 34.82 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1758 10356 0.038744 CTGGAACTTGGCCCTGATGT 59.961 55.0 0.0 0.0 0.00 3.06 R
2634 11442 0.920664 GAACAAGTTTTGGCACACGC 59.079 50.0 0.0 0.0 39.29 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 5.178797 CAGTAAGAAACTTGTCCATCCGAT 58.821 41.667 0.00 0.00 35.76 4.18
103 106 1.438651 GAGCGAGTGTGGCATTAACA 58.561 50.000 0.00 0.00 0.00 2.41
134 137 0.314302 GCTCGCCTATGGTGTATCGT 59.686 55.000 0.00 0.00 34.40 3.73
165 168 1.001815 ACTCAAAATTTGGTCGTGGCG 60.002 47.619 5.83 0.00 0.00 5.69
167 170 0.596083 CAAAATTTGGTCGTGGCGCA 60.596 50.000 10.83 0.00 0.00 6.09
221 232 3.817647 GGGATTTTGAGCGAGCTTCATAT 59.182 43.478 0.00 0.00 0.00 1.78
225 236 3.650070 TTGAGCGAGCTTCATATCGAT 57.350 42.857 2.16 2.16 41.40 3.59
297 310 7.148255 CGTCTTTCATAAATTCTGGTGATCCAA 60.148 37.037 0.00 0.00 43.81 3.53
323 336 2.521958 ATAGCGACTTTGCGGGTGCT 62.522 55.000 0.00 0.00 43.34 4.40
324 337 4.389576 GCGACTTTGCGGGTGCTG 62.390 66.667 0.00 0.00 43.34 4.41
646 686 1.902840 AAAAACGTGACAAGCAACGG 58.097 45.000 0.00 0.00 0.00 4.44
864 912 0.892755 TCACGCGTCTTCATTAGGGT 59.107 50.000 9.86 0.00 0.00 4.34
888 946 8.594550 GGTACCATCACATCTATAAATACCACT 58.405 37.037 7.15 0.00 0.00 4.00
992 1077 2.069273 CAAGGACCAAGCAGACTAACG 58.931 52.381 0.00 0.00 0.00 3.18
1219 9592 0.801872 GGAATGCATGCGTGTGTGTA 59.198 50.000 14.40 0.00 0.00 2.90
1220 9593 1.401552 GGAATGCATGCGTGTGTGTAT 59.598 47.619 14.40 0.00 0.00 2.29
1221 9594 2.443387 GAATGCATGCGTGTGTGTATG 58.557 47.619 14.40 0.00 35.37 2.39
1222 9595 1.452110 ATGCATGCGTGTGTGTATGT 58.548 45.000 12.68 0.00 34.82 2.29
1223 9596 0.516439 TGCATGCGTGTGTGTATGTG 59.484 50.000 14.09 0.00 34.82 3.21
1224 9597 0.516877 GCATGCGTGTGTGTATGTGT 59.483 50.000 0.00 0.00 34.82 3.72
1397 9770 2.933287 TCCCGGGGCTGAACACAT 60.933 61.111 23.50 0.00 0.00 3.21
1522 9895 2.738521 CAGGTGGGCTTCGTCACG 60.739 66.667 0.00 0.00 34.93 4.35
1758 10356 4.308458 CGGCGGTGTGGTGGAGAA 62.308 66.667 0.00 0.00 0.00 2.87
1902 10568 3.914364 GCTCTTTGATTGCACGGTAAAAG 59.086 43.478 0.00 0.00 0.00 2.27
1906 10572 1.539388 TGATTGCACGGTAAAAGCCTG 59.461 47.619 0.00 0.00 0.00 4.85
1910 10576 1.293267 GCACGGTAAAAGCCTGCGTA 61.293 55.000 0.00 0.00 0.00 4.42
1915 10581 2.336667 GGTAAAAGCCTGCGTACGTAA 58.663 47.619 17.90 4.85 0.00 3.18
1916 10582 2.931969 GGTAAAAGCCTGCGTACGTAAT 59.068 45.455 17.90 0.00 0.00 1.89
1917 10583 4.111916 GGTAAAAGCCTGCGTACGTAATA 58.888 43.478 17.90 0.46 0.00 0.98
1918 10584 4.746611 GGTAAAAGCCTGCGTACGTAATAT 59.253 41.667 17.90 0.00 0.00 1.28
1919 10585 5.234972 GGTAAAAGCCTGCGTACGTAATATT 59.765 40.000 17.90 4.08 0.00 1.28
1922 10588 6.701432 AAAGCCTGCGTACGTAATATTATC 57.299 37.500 17.90 0.00 0.00 1.75
1924 10590 5.159209 AGCCTGCGTACGTAATATTATCAC 58.841 41.667 17.90 0.00 0.00 3.06
1925 10591 4.325472 GCCTGCGTACGTAATATTATCACC 59.675 45.833 17.90 0.00 0.00 4.02
1926 10592 5.463286 CCTGCGTACGTAATATTATCACCA 58.537 41.667 17.90 0.20 0.00 4.17
1927 10593 5.344128 CCTGCGTACGTAATATTATCACCAC 59.656 44.000 17.90 0.00 0.00 4.16
1928 10594 5.829829 TGCGTACGTAATATTATCACCACA 58.170 37.500 17.90 0.00 0.00 4.17
1929 10595 5.686841 TGCGTACGTAATATTATCACCACAC 59.313 40.000 17.90 0.00 0.00 3.82
1930 10596 5.164254 GCGTACGTAATATTATCACCACACG 60.164 44.000 17.90 0.22 0.00 4.49
1986 10652 6.144078 AGGTGAAAAGCGTCTTGTTATTTT 57.856 33.333 0.00 0.00 0.00 1.82
2029 10695 4.510340 GCAGGTATCGATGGTTTTTCGTAT 59.490 41.667 8.54 0.00 37.82 3.06
2036 10702 3.611113 CGATGGTTTTTCGTATGACGTCT 59.389 43.478 17.92 4.95 43.14 4.18
2045 10711 9.848172 GTTTTTCGTATGACGTCTTAAGTTTTA 57.152 29.630 17.92 0.00 43.14 1.52
2049 10715 7.669098 TCGTATGACGTCTTAAGTTTTATTGC 58.331 34.615 17.92 0.00 43.14 3.56
2051 10717 7.953173 CGTATGACGTCTTAAGTTTTATTGCAA 59.047 33.333 17.92 0.00 36.74 4.08
2055 10721 9.767684 TGACGTCTTAAGTTTTATTGCAATATG 57.232 29.630 19.51 4.78 0.00 1.78
2060 10726 9.284594 TCTTAAGTTTTATTGCAATATGTTCGC 57.715 29.630 19.51 7.65 0.00 4.70
2063 10729 6.385843 AGTTTTATTGCAATATGTTCGCACA 58.614 32.000 19.51 0.00 34.87 4.57
2071 10737 4.726591 GCAATATGTTCGCACACGTGTAAT 60.727 41.667 22.90 10.51 41.18 1.89
2098 10764 1.091537 AATAAATGCGTCCACGGGTG 58.908 50.000 0.55 0.00 40.23 4.61
2105 10771 1.661480 CGTCCACGGGTGTTCAGTA 59.339 57.895 0.00 0.00 35.37 2.74
2123 10789 4.770531 TCAGTAACTCAGCCTGCTTTACTA 59.229 41.667 14.01 4.92 32.47 1.82
2145 10811 3.370104 TGTCCCAATCCACACAAAGTTT 58.630 40.909 0.00 0.00 0.00 2.66
2165 10831 4.717233 TTTGTGAATGGTGTGATATGGC 57.283 40.909 0.00 0.00 0.00 4.40
2166 10832 3.650281 TGTGAATGGTGTGATATGGCT 57.350 42.857 0.00 0.00 0.00 4.75
2171 10837 5.696724 GTGAATGGTGTGATATGGCTAGTAC 59.303 44.000 0.00 0.00 0.00 2.73
2172 10838 4.891992 ATGGTGTGATATGGCTAGTACC 57.108 45.455 0.00 0.00 0.00 3.34
2173 10839 2.969950 TGGTGTGATATGGCTAGTACCC 59.030 50.000 0.00 0.00 0.00 3.69
2174 10840 3.240302 GGTGTGATATGGCTAGTACCCT 58.760 50.000 0.00 0.00 0.00 4.34
2175 10841 3.646637 GGTGTGATATGGCTAGTACCCTT 59.353 47.826 0.00 0.00 0.00 3.95
2176 10842 4.836736 GGTGTGATATGGCTAGTACCCTTA 59.163 45.833 0.00 0.00 0.00 2.69
2230 10898 6.025280 TGTTTCAAAAGTCGAAGTTTGCTAC 58.975 36.000 14.35 13.87 35.21 3.58
2233 10901 5.806286 TCAAAAGTCGAAGTTTGCTACTTG 58.194 37.500 14.35 3.29 47.00 3.16
2245 10913 8.825667 AAGTTTGCTACTTGAACTTTCAAAAA 57.174 26.923 5.92 1.25 45.33 1.94
2295 10963 7.974675 TCAAAAGTATCTAGCTTTGATTTCCG 58.025 34.615 0.00 0.00 36.43 4.30
2328 11134 8.082242 ACTAAAAGTAGTTTTGAATGATGGCAC 58.918 33.333 16.89 0.00 37.25 5.01
2335 11141 0.795698 TGAATGATGGCACGACAACG 59.204 50.000 0.00 0.00 45.75 4.10
2349 11155 1.202568 CAACGCTTCTCGCACACAG 59.797 57.895 0.00 0.00 43.23 3.66
2359 11165 2.032528 GCACACAGCAGCCTGGTA 59.967 61.111 0.00 0.00 43.53 3.25
2365 11171 3.696051 CACACAGCAGCCTGGTAAATAAT 59.304 43.478 0.00 0.00 43.53 1.28
2367 11173 5.356751 CACACAGCAGCCTGGTAAATAATAA 59.643 40.000 0.00 0.00 43.53 1.40
2368 11174 5.949354 ACACAGCAGCCTGGTAAATAATAAA 59.051 36.000 0.00 0.00 43.53 1.40
2422 11228 9.469807 ACTGAAGTTCATTAATATTCTAGCGAG 57.530 33.333 5.91 0.00 0.00 5.03
2457 11264 8.893563 AATCTCCAAGTTCCCAATTGTATTAA 57.106 30.769 4.43 0.00 0.00 1.40
2461 11268 9.586435 CTCCAAGTTCCCAATTGTATTAAATTC 57.414 33.333 4.43 0.00 0.00 2.17
2515 11322 8.178313 GCTATCTAACTGTTCATTGTTTCTTCC 58.822 37.037 0.00 0.00 0.00 3.46
2519 11326 8.966868 TCTAACTGTTCATTGTTTCTTCCTTTT 58.033 29.630 0.00 0.00 0.00 2.27
2523 11330 9.936759 ACTGTTCATTGTTTCTTCCTTTTAAAA 57.063 25.926 0.00 0.00 0.00 1.52
2562 11369 7.989826 AGTATCAGTTTTGAAATATGCCTGAC 58.010 34.615 0.00 0.00 36.78 3.51
2563 11370 7.831193 AGTATCAGTTTTGAAATATGCCTGACT 59.169 33.333 0.00 0.00 36.78 3.41
2565 11372 7.994425 TCAGTTTTGAAATATGCCTGACTTA 57.006 32.000 0.00 0.00 0.00 2.24
2568 11375 9.643693 CAGTTTTGAAATATGCCTGACTTATTT 57.356 29.630 0.00 0.00 39.83 1.40
2608 11416 7.095523 CCCAAATTACTCATGTGCTTCTTTTTG 60.096 37.037 0.00 0.00 0.00 2.44
2634 11442 6.611381 TGCAAATTTCTTGACTAGATTTCCG 58.389 36.000 0.00 0.00 31.54 4.30
2649 11457 1.658686 TTCCGCGTGTGCCAAAACTT 61.659 50.000 4.92 0.00 38.08 2.66
2652 11460 0.800300 CGCGTGTGCCAAAACTTGTT 60.800 50.000 0.00 0.00 38.08 2.83
2654 11462 1.187715 CGTGTGCCAAAACTTGTTCG 58.812 50.000 0.00 0.00 0.00 3.95
2660 11468 2.890311 TGCCAAAACTTGTTCGGATCAT 59.110 40.909 0.00 0.00 0.00 2.45
2664 11472 5.288804 CCAAAACTTGTTCGGATCATTGTT 58.711 37.500 0.00 0.00 0.00 2.83
2674 11482 2.639065 GGATCATTGTTAAGACCGCCA 58.361 47.619 0.00 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 0.897863 CGGATTTTCTTGGTGGCCCA 60.898 55.000 0.00 0.00 39.65 5.36
67 68 2.369394 GCTCCATCGGATTTTCTTGGT 58.631 47.619 0.00 0.00 0.00 3.67
103 106 2.266055 GCGAGCAACCACCTAGCT 59.734 61.111 0.00 0.00 42.17 3.32
134 137 1.904287 ATTTTGAGTTGTGCGGCCTA 58.096 45.000 0.00 0.00 0.00 3.93
221 232 4.551702 TTTGGAGAATGTGAAGGATCGA 57.448 40.909 0.00 0.00 0.00 3.59
225 236 7.348274 ACCTCTATATTTGGAGAATGTGAAGGA 59.652 37.037 0.00 0.00 32.42 3.36
297 310 1.867233 CGCAAAGTCGCTATATGCCTT 59.133 47.619 0.00 0.00 38.78 4.35
339 354 6.405538 ACCAATCGTCCTAATACCGTAAAAA 58.594 36.000 0.00 0.00 0.00 1.94
344 359 3.722728 GACCAATCGTCCTAATACCGT 57.277 47.619 0.00 0.00 35.23 4.83
404 427 3.600786 GCCTATTCACGTAAACGCAAAAC 59.399 43.478 1.74 0.00 44.43 2.43
888 946 1.778383 AAGAGGGGGTGCTTGGGAA 60.778 57.895 0.00 0.00 0.00 3.97
937 1012 2.289133 GGCTAGCTGGCTGGTAGTTATC 60.289 54.545 22.23 12.63 45.65 1.75
992 1077 2.877168 CAGAGCTTGGCCATGATTAGTC 59.123 50.000 22.21 8.84 0.00 2.59
1219 9592 2.592574 AGCGCTGCACACACACAT 60.593 55.556 10.39 0.00 0.00 3.21
1220 9593 3.575400 CAGCGCTGCACACACACA 61.575 61.111 26.68 0.00 0.00 3.72
1221 9594 3.232645 CTCAGCGCTGCACACACAC 62.233 63.158 32.44 0.00 0.00 3.82
1222 9595 2.968697 CTCAGCGCTGCACACACA 60.969 61.111 32.44 12.56 0.00 3.72
1223 9596 3.720193 CCTCAGCGCTGCACACAC 61.720 66.667 32.44 0.00 0.00 3.82
1224 9597 4.994471 CCCTCAGCGCTGCACACA 62.994 66.667 32.44 14.12 0.00 3.72
1397 9770 2.668632 GGACATGGAGACGCCCAA 59.331 61.111 0.00 0.00 40.04 4.12
1502 9875 2.281484 GACGAAGCCCACCTGCAA 60.281 61.111 0.00 0.00 0.00 4.08
1747 10345 0.692476 CCCTGATGTTCTCCACCACA 59.308 55.000 0.00 0.00 0.00 4.17
1758 10356 0.038744 CTGGAACTTGGCCCTGATGT 59.961 55.000 0.00 0.00 0.00 3.06
1847 10447 1.387420 CACGCTAAATCACGTACGCAA 59.613 47.619 16.72 3.57 41.32 4.85
1902 10568 4.325472 GGTGATAATATTACGTACGCAGGC 59.675 45.833 16.72 0.00 0.00 4.85
1906 10572 5.164254 CGTGTGGTGATAATATTACGTACGC 60.164 44.000 16.72 0.00 0.00 4.42
1910 10576 5.068198 AGGACGTGTGGTGATAATATTACGT 59.932 40.000 8.14 8.14 44.84 3.57
1915 10581 8.362464 ACATATAGGACGTGTGGTGATAATAT 57.638 34.615 0.00 0.00 0.00 1.28
1916 10582 7.668469 AGACATATAGGACGTGTGGTGATAATA 59.332 37.037 0.00 0.00 0.00 0.98
1917 10583 6.493802 AGACATATAGGACGTGTGGTGATAAT 59.506 38.462 0.00 0.00 0.00 1.28
1918 10584 5.831525 AGACATATAGGACGTGTGGTGATAA 59.168 40.000 0.00 0.00 0.00 1.75
1919 10585 5.382616 AGACATATAGGACGTGTGGTGATA 58.617 41.667 0.00 0.00 0.00 2.15
1922 10588 4.098044 AGAAGACATATAGGACGTGTGGTG 59.902 45.833 0.00 0.00 0.00 4.17
1924 10590 4.338400 TGAGAAGACATATAGGACGTGTGG 59.662 45.833 0.00 0.00 0.00 4.17
1925 10591 5.500645 TGAGAAGACATATAGGACGTGTG 57.499 43.478 0.00 0.00 0.00 3.82
1926 10592 6.065374 AGATGAGAAGACATATAGGACGTGT 58.935 40.000 0.00 0.00 0.00 4.49
1927 10593 6.567687 AGATGAGAAGACATATAGGACGTG 57.432 41.667 0.00 0.00 0.00 4.49
1928 10594 5.410132 CGAGATGAGAAGACATATAGGACGT 59.590 44.000 0.00 0.00 0.00 4.34
1929 10595 5.410132 ACGAGATGAGAAGACATATAGGACG 59.590 44.000 0.00 0.00 0.00 4.79
1930 10596 6.653320 AGACGAGATGAGAAGACATATAGGAC 59.347 42.308 0.00 0.00 0.00 3.85
1986 10652 2.223144 GCATACAGCTCAACAACGAACA 59.777 45.455 0.00 0.00 41.15 3.18
2029 10695 9.767684 CATATTGCAATAAAACTTAAGACGTCA 57.232 29.630 22.37 0.00 0.00 4.35
2036 10702 8.855279 GTGCGAACATATTGCAATAAAACTTAA 58.145 29.630 22.37 0.00 40.83 1.85
2045 10711 2.161410 ACGTGTGCGAACATATTGCAAT 59.839 40.909 17.56 17.56 40.83 3.56
2047 10713 1.136113 CACGTGTGCGAACATATTGCA 60.136 47.619 7.58 0.00 42.00 4.08
2048 10714 1.136085 ACACGTGTGCGAACATATTGC 60.136 47.619 22.71 0.00 42.00 3.56
2049 10715 2.873170 ACACGTGTGCGAACATATTG 57.127 45.000 22.71 0.00 42.00 1.90
2051 10717 4.390603 ACAATTACACGTGTGCGAACATAT 59.609 37.500 30.83 8.20 42.00 1.78
2053 10719 2.546368 ACAATTACACGTGTGCGAACAT 59.454 40.909 30.83 9.97 42.00 2.71
2054 10720 1.934525 ACAATTACACGTGTGCGAACA 59.065 42.857 30.83 7.00 42.00 3.18
2055 10721 2.656192 ACAATTACACGTGTGCGAAC 57.344 45.000 30.83 0.00 42.00 3.95
2063 10729 9.991388 ACGCATTTATTTATTACAATTACACGT 57.009 25.926 0.00 0.00 0.00 4.49
2071 10737 6.458478 CCCGTGGACGCATTTATTTATTACAA 60.458 38.462 0.00 0.00 38.18 2.41
2093 10759 1.429463 GCTGAGTTACTGAACACCCG 58.571 55.000 0.00 0.00 38.10 5.28
2098 10764 2.464157 AGCAGGCTGAGTTACTGAAC 57.536 50.000 20.86 0.00 34.21 3.18
2105 10771 4.508662 GACATAGTAAAGCAGGCTGAGTT 58.491 43.478 20.86 13.24 0.00 3.01
2123 10789 3.243359 ACTTTGTGTGGATTGGGACAT 57.757 42.857 0.00 0.00 39.30 3.06
2145 10811 3.966979 AGCCATATCACACCATTCACAA 58.033 40.909 0.00 0.00 0.00 3.33
2152 10818 2.969950 GGGTACTAGCCATATCACACCA 59.030 50.000 0.00 0.00 35.40 4.17
2153 10819 3.240302 AGGGTACTAGCCATATCACACC 58.760 50.000 7.06 0.00 38.48 4.16
2165 10831 6.459923 GCATTTCTCCTCATAAGGGTACTAG 58.540 44.000 0.00 0.00 43.56 2.57
2166 10832 5.307196 GGCATTTCTCCTCATAAGGGTACTA 59.693 44.000 0.00 0.00 43.56 1.82
2171 10837 3.582998 TGGCATTTCTCCTCATAAGGG 57.417 47.619 0.00 0.00 43.56 3.95
2172 10838 6.774656 AGTAAATGGCATTTCTCCTCATAAGG 59.225 38.462 27.42 0.00 37.56 2.69
2173 10839 7.040823 GGAGTAAATGGCATTTCTCCTCATAAG 60.041 40.741 34.57 0.00 40.05 1.73
2174 10840 6.772716 GGAGTAAATGGCATTTCTCCTCATAA 59.227 38.462 34.57 17.37 40.05 1.90
2175 10841 6.101734 AGGAGTAAATGGCATTTCTCCTCATA 59.898 38.462 36.51 19.18 44.39 2.15
2176 10842 5.103771 AGGAGTAAATGGCATTTCTCCTCAT 60.104 40.000 36.51 28.93 44.39 2.90
2245 10913 8.585471 ATGTATGAAGGATCAAAATTGTCTGT 57.415 30.769 0.00 0.00 39.49 3.41
2276 10944 4.570772 TGCACGGAAATCAAAGCTAGATAC 59.429 41.667 0.00 1.40 0.00 2.24
2293 10961 5.607119 AAACTACTTTTAGTGATGCACGG 57.393 39.130 0.00 0.00 38.65 4.94
2295 10963 8.905702 CATTCAAAACTACTTTTAGTGATGCAC 58.094 33.333 0.00 0.00 38.65 4.57
2335 11141 2.858868 CTGCTGTGTGCGAGAAGC 59.141 61.111 0.00 0.00 46.63 3.86
2349 11155 9.846248 CTATGATTTTATTATTTACCAGGCTGC 57.154 33.333 9.56 0.00 0.00 5.25
2397 11203 8.920665 CCTCGCTAGAATATTAATGAACTTCAG 58.079 37.037 0.00 0.00 0.00 3.02
2436 11243 9.094578 TGAATTTAATACAATTGGGAACTTGGA 57.905 29.630 10.83 0.00 0.00 3.53
2571 11378 8.109634 ACATGAGTAATTTGGGAAACTGATACT 58.890 33.333 0.00 0.00 0.00 2.12
2572 11379 8.184192 CACATGAGTAATTTGGGAAACTGATAC 58.816 37.037 0.00 0.00 0.00 2.24
2573 11380 7.148086 GCACATGAGTAATTTGGGAAACTGATA 60.148 37.037 0.00 0.00 0.00 2.15
2574 11381 6.350445 GCACATGAGTAATTTGGGAAACTGAT 60.350 38.462 0.00 0.00 0.00 2.90
2575 11382 5.048083 GCACATGAGTAATTTGGGAAACTGA 60.048 40.000 0.00 0.00 0.00 3.41
2576 11383 5.047802 AGCACATGAGTAATTTGGGAAACTG 60.048 40.000 0.00 0.00 0.00 3.16
2578 11385 5.391312 AGCACATGAGTAATTTGGGAAAC 57.609 39.130 0.00 0.00 0.00 2.78
2608 11416 7.061094 CGGAAATCTAGTCAAGAAATTTGCAAC 59.939 37.037 0.00 0.00 37.89 4.17
2634 11442 0.920664 GAACAAGTTTTGGCACACGC 59.079 50.000 0.00 0.00 39.29 5.34
2649 11457 3.930229 CGGTCTTAACAATGATCCGAACA 59.070 43.478 0.00 0.00 38.96 3.18
2652 11460 2.546778 GCGGTCTTAACAATGATCCGA 58.453 47.619 0.00 0.00 38.96 4.55
2654 11462 2.639065 TGGCGGTCTTAACAATGATCC 58.361 47.619 0.00 0.00 0.00 3.36
2660 11468 4.571580 CGGTAATAATGGCGGTCTTAACAA 59.428 41.667 0.00 0.00 0.00 2.83
2664 11472 5.528043 TTACGGTAATAATGGCGGTCTTA 57.472 39.130 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.