Multiple sequence alignment - TraesCS3D01G488600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G488600 chr3D 100.000 2702 0 0 1 2702 583180057 583177356 0.000000e+00 4990.0
1 TraesCS3D01G488600 chr3D 94.649 1439 75 2 863 2300 583275015 583273578 0.000000e+00 2230.0
2 TraesCS3D01G488600 chr3D 93.614 1331 82 2 553 1882 583162408 583161080 0.000000e+00 1984.0
3 TraesCS3D01G488600 chr3D 86.832 1496 143 33 660 2135 583027131 583025670 0.000000e+00 1622.0
4 TraesCS3D01G488600 chr3D 98.526 407 5 1 1 407 583186047 583185642 0.000000e+00 717.0
5 TraesCS3D01G488600 chr3D 97.789 407 8 1 1 407 583282927 583282522 0.000000e+00 701.0
6 TraesCS3D01G488600 chr3D 94.074 405 20 3 2297 2701 583273019 583272619 1.780000e-171 612.0
7 TraesCS3D01G488600 chr3D 90.929 452 26 6 414 865 583276371 583275935 6.440000e-166 593.0
8 TraesCS3D01G488600 chr3D 96.354 192 5 2 1 191 583188827 583188637 5.620000e-82 315.0
9 TraesCS3D01G488600 chr3D 85.338 266 28 8 414 670 583223341 583223078 5.740000e-67 265.0
10 TraesCS3D01G488600 chr3D 85.772 246 25 3 172 407 583223355 583223110 4.470000e-63 252.0
11 TraesCS3D01G488600 chr3D 94.595 148 7 1 414 561 583168015 583167869 7.530000e-56 228.0
12 TraesCS3D01G488600 chr3D 88.000 150 15 1 476 625 583027275 583027129 9.940000e-40 174.0
13 TraesCS3D01G488600 chr3B 94.066 1129 61 3 755 1882 780295757 780294634 0.000000e+00 1709.0
14 TraesCS3D01G488600 chr3B 89.926 407 10 9 1 407 780300504 780300129 1.870000e-136 496.0
15 TraesCS3D01G488600 chr3B 87.891 256 25 3 414 663 780339396 780339141 2.030000e-76 296.0
16 TraesCS3D01G488600 chr3B 85.496 262 29 3 155 407 780339427 780339166 5.740000e-67 265.0
17 TraesCS3D01G488600 chrUn 90.417 1200 93 10 660 1854 41698921 41700103 0.000000e+00 1559.0
18 TraesCS3D01G488600 chrUn 86.018 1459 152 35 414 1854 101987901 101986477 0.000000e+00 1517.0
19 TraesCS3D01G488600 chrUn 89.173 1136 103 12 728 1854 101984257 101983133 0.000000e+00 1399.0
20 TraesCS3D01G488600 chrUn 91.489 141 12 0 523 663 101984429 101984289 7.630000e-46 195.0
21 TraesCS3D01G488600 chr6B 87.004 1385 132 25 504 1854 62634423 62633053 0.000000e+00 1517.0
22 TraesCS3D01G488600 chr6B 83.120 1327 178 30 504 1792 62691238 62689920 0.000000e+00 1168.0
23 TraesCS3D01G488600 chr6A 85.960 1453 153 29 414 1854 34278454 34277041 0.000000e+00 1506.0
24 TraesCS3D01G488600 chr6A 85.203 1453 150 33 414 1854 34273640 34272241 0.000000e+00 1432.0
25 TraesCS3D01G488600 chr6A 83.849 1325 172 27 504 1792 34282483 34281165 0.000000e+00 1223.0
26 TraesCS3D01G488600 chr6A 82.890 1391 172 44 504 1839 34280505 34279126 0.000000e+00 1190.0
27 TraesCS3D01G488600 chr6A 75.526 380 47 18 39 407 34282693 34282349 7.800000e-31 145.0
28 TraesCS3D01G488600 chr6A 79.147 211 32 8 204 407 34393150 34392945 4.690000e-28 135.0
29 TraesCS3D01G488600 chr6A 79.227 207 26 3 204 407 34280563 34280371 7.850000e-26 128.0
30 TraesCS3D01G488600 chr7B 95.238 42 2 0 171 212 244635311 244635352 1.740000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G488600 chr3D 583177356 583180057 2701 True 4990.000000 4990 100.000000 1 2702 1 chr3D.!!$R3 2701
1 TraesCS3D01G488600 chr3D 583161080 583162408 1328 True 1984.000000 1984 93.614000 553 1882 1 chr3D.!!$R1 1329
2 TraesCS3D01G488600 chr3D 583272619 583276371 3752 True 1145.000000 2230 93.217333 414 2701 3 chr3D.!!$R8 2287
3 TraesCS3D01G488600 chr3D 583025670 583027275 1605 True 898.000000 1622 87.416000 476 2135 2 chr3D.!!$R5 1659
4 TraesCS3D01G488600 chr3D 583185642 583188827 3185 True 516.000000 717 97.440000 1 407 2 chr3D.!!$R6 406
5 TraesCS3D01G488600 chr3B 780294634 780295757 1123 True 1709.000000 1709 94.066000 755 1882 1 chr3B.!!$R1 1127
6 TraesCS3D01G488600 chrUn 41698921 41700103 1182 False 1559.000000 1559 90.417000 660 1854 1 chrUn.!!$F1 1194
7 TraesCS3D01G488600 chrUn 101983133 101987901 4768 True 1037.000000 1517 88.893333 414 1854 3 chrUn.!!$R1 1440
8 TraesCS3D01G488600 chr6B 62633053 62634423 1370 True 1517.000000 1517 87.004000 504 1854 1 chr6B.!!$R1 1350
9 TraesCS3D01G488600 chr6B 62689920 62691238 1318 True 1168.000000 1168 83.120000 504 1792 1 chr6B.!!$R2 1288
10 TraesCS3D01G488600 chr6A 34272241 34282693 10452 True 937.333333 1506 82.109167 39 1854 6 chr6A.!!$R2 1815

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
253 343 0.03582 TGGGGATAACACGCTGAACC 60.036 55.0 0.0 0.0 0.0 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1732 7359 1.137404 CCTCAAAAAGGCGGATGCG 59.863 57.895 0.65 0.65 44.1 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 97 4.332268 GTCCGAGAATCAGTTAGTACGACT 59.668 45.833 0.00 0.00 33.17 4.18
187 191 8.204160 TCTGTGTAGTGGTTAGATATCAAATGG 58.796 37.037 5.32 0.00 0.00 3.16
188 192 7.857456 TGTGTAGTGGTTAGATATCAAATGGT 58.143 34.615 5.32 0.00 0.00 3.55
189 193 7.985184 TGTGTAGTGGTTAGATATCAAATGGTC 59.015 37.037 5.32 0.00 0.00 4.02
190 194 7.985184 GTGTAGTGGTTAGATATCAAATGGTCA 59.015 37.037 5.32 0.00 0.00 4.02
191 195 8.713971 TGTAGTGGTTAGATATCAAATGGTCAT 58.286 33.333 5.32 0.00 0.00 3.06
193 197 6.488006 AGTGGTTAGATATCAAATGGTCATGC 59.512 38.462 5.32 0.00 0.00 4.06
194 198 6.488006 GTGGTTAGATATCAAATGGTCATGCT 59.512 38.462 5.32 0.00 0.00 3.79
195 199 7.661437 GTGGTTAGATATCAAATGGTCATGCTA 59.339 37.037 5.32 0.00 0.00 3.49
196 200 7.661437 TGGTTAGATATCAAATGGTCATGCTAC 59.339 37.037 5.32 0.00 0.00 3.58
197 201 7.880195 GGTTAGATATCAAATGGTCATGCTACT 59.120 37.037 5.32 0.00 0.00 2.57
198 202 8.930760 GTTAGATATCAAATGGTCATGCTACTC 58.069 37.037 5.32 0.00 0.00 2.59
199 203 7.071069 AGATATCAAATGGTCATGCTACTCA 57.929 36.000 5.32 0.00 0.00 3.41
202 206 4.002982 TCAAATGGTCATGCTACTCACAC 58.997 43.478 0.00 0.00 0.00 3.82
203 207 2.299993 ATGGTCATGCTACTCACACG 57.700 50.000 0.00 0.00 0.00 4.49
204 208 0.246360 TGGTCATGCTACTCACACGG 59.754 55.000 0.00 0.00 0.00 4.94
206 210 1.350193 GTCATGCTACTCACACGGTG 58.650 55.000 6.58 6.58 34.45 4.94
207 211 0.246360 TCATGCTACTCACACGGTGG 59.754 55.000 13.48 1.73 33.87 4.61
212 216 4.250305 ACTCACACGGTGGGTGGC 62.250 66.667 15.98 0.00 46.35 5.01
217 221 2.203280 CACGGTGGGTGGCTGAAA 60.203 61.111 0.00 0.00 43.16 2.69
218 222 2.113139 ACGGTGGGTGGCTGAAAG 59.887 61.111 0.00 0.00 0.00 2.62
236 326 4.279169 TGAAAGCCTCAAACTGAAGAATGG 59.721 41.667 0.00 0.00 0.00 3.16
237 327 2.800250 AGCCTCAAACTGAAGAATGGG 58.200 47.619 0.00 0.00 0.00 4.00
239 329 2.555227 GCCTCAAACTGAAGAATGGGGA 60.555 50.000 9.31 0.00 35.32 4.81
240 330 3.879321 GCCTCAAACTGAAGAATGGGGAT 60.879 47.826 9.31 0.00 35.32 3.85
243 333 5.358160 CCTCAAACTGAAGAATGGGGATAAC 59.642 44.000 1.31 0.00 35.32 1.89
245 335 5.710099 TCAAACTGAAGAATGGGGATAACAC 59.290 40.000 0.00 0.00 0.00 3.32
247 337 2.614057 CTGAAGAATGGGGATAACACGC 59.386 50.000 0.00 0.00 0.00 5.34
249 339 2.332063 AGAATGGGGATAACACGCTG 57.668 50.000 0.00 0.00 0.00 5.18
250 340 1.837439 AGAATGGGGATAACACGCTGA 59.163 47.619 0.00 0.00 0.00 4.26
252 342 2.038387 ATGGGGATAACACGCTGAAC 57.962 50.000 0.00 0.00 0.00 3.18
253 343 0.035820 TGGGGATAACACGCTGAACC 60.036 55.000 0.00 0.00 0.00 3.62
255 345 1.084289 GGGATAACACGCTGAACCAC 58.916 55.000 0.00 0.00 0.00 4.16
259 349 3.370061 GGATAACACGCTGAACCACTAAC 59.630 47.826 0.00 0.00 0.00 2.34
262 352 2.143122 ACACGCTGAACCACTAACATG 58.857 47.619 0.00 0.00 0.00 3.21
264 354 2.805671 CACGCTGAACCACTAACATGAA 59.194 45.455 0.00 0.00 0.00 2.57
265 355 3.436704 CACGCTGAACCACTAACATGAAT 59.563 43.478 0.00 0.00 0.00 2.57
267 357 3.935203 CGCTGAACCACTAACATGAATCT 59.065 43.478 0.00 0.00 0.00 2.40
269 359 5.634896 GCTGAACCACTAACATGAATCTTG 58.365 41.667 0.00 0.00 0.00 3.02
271 361 6.558771 TGAACCACTAACATGAATCTTGTG 57.441 37.500 0.00 0.00 0.00 3.33
274 364 4.456911 ACCACTAACATGAATCTTGTGCAG 59.543 41.667 0.00 6.18 0.00 4.41
275 365 4.456911 CCACTAACATGAATCTTGTGCAGT 59.543 41.667 0.00 6.73 0.00 4.40
276 366 5.388111 CACTAACATGAATCTTGTGCAGTG 58.612 41.667 19.83 19.83 35.97 3.66
277 367 3.928727 AACATGAATCTTGTGCAGTGG 57.071 42.857 0.00 0.00 0.00 4.00
278 368 3.144657 ACATGAATCTTGTGCAGTGGA 57.855 42.857 0.00 0.00 0.00 4.02
279 369 3.693807 ACATGAATCTTGTGCAGTGGAT 58.306 40.909 0.00 0.00 0.00 3.41
280 370 3.693085 ACATGAATCTTGTGCAGTGGATC 59.307 43.478 0.00 0.00 0.00 3.36
281 371 3.708403 TGAATCTTGTGCAGTGGATCT 57.292 42.857 0.00 0.00 0.00 2.75
282 372 4.025040 TGAATCTTGTGCAGTGGATCTT 57.975 40.909 0.00 0.00 0.00 2.40
283 373 3.754850 TGAATCTTGTGCAGTGGATCTTG 59.245 43.478 0.00 0.00 0.00 3.02
284 374 2.936919 TCTTGTGCAGTGGATCTTGT 57.063 45.000 0.00 0.00 0.00 3.16
285 375 3.213206 TCTTGTGCAGTGGATCTTGTT 57.787 42.857 0.00 0.00 0.00 2.83
286 376 3.554934 TCTTGTGCAGTGGATCTTGTTT 58.445 40.909 0.00 0.00 0.00 2.83
287 377 3.565482 TCTTGTGCAGTGGATCTTGTTTC 59.435 43.478 0.00 0.00 0.00 2.78
288 378 2.229792 TGTGCAGTGGATCTTGTTTCC 58.770 47.619 0.00 0.00 0.00 3.13
289 379 1.197721 GTGCAGTGGATCTTGTTTCCG 59.802 52.381 0.00 0.00 35.94 4.30
290 380 1.202758 TGCAGTGGATCTTGTTTCCGT 60.203 47.619 0.00 0.00 35.94 4.69
291 381 1.197721 GCAGTGGATCTTGTTTCCGTG 59.802 52.381 0.00 0.00 35.94 4.94
292 382 1.806542 CAGTGGATCTTGTTTCCGTGG 59.193 52.381 0.00 0.00 35.94 4.94
293 383 0.521735 GTGGATCTTGTTTCCGTGGC 59.478 55.000 0.00 0.00 35.94 5.01
294 384 0.608035 TGGATCTTGTTTCCGTGGCC 60.608 55.000 0.00 0.00 35.94 5.36
297 387 2.617021 GGATCTTGTTTCCGTGGCCTAA 60.617 50.000 3.32 0.00 0.00 2.69
298 388 2.642154 TCTTGTTTCCGTGGCCTAAA 57.358 45.000 3.32 0.00 0.00 1.85
299 389 2.223745 TCTTGTTTCCGTGGCCTAAAC 58.776 47.619 3.32 10.12 34.45 2.01
300 390 1.950909 CTTGTTTCCGTGGCCTAAACA 59.049 47.619 16.88 16.88 40.36 2.83
301 391 2.279935 TGTTTCCGTGGCCTAAACAT 57.720 45.000 16.88 0.00 37.99 2.71
302 392 1.883275 TGTTTCCGTGGCCTAAACATG 59.117 47.619 16.88 0.00 37.99 3.21
303 393 0.885196 TTTCCGTGGCCTAAACATGC 59.115 50.000 3.32 0.00 0.00 4.06
306 396 1.656818 CCGTGGCCTAAACATGCCAG 61.657 60.000 3.32 0.00 32.60 4.85
307 397 1.512694 GTGGCCTAAACATGCCAGC 59.487 57.895 3.32 0.00 32.60 4.85
309 399 1.250154 TGGCCTAAACATGCCAGCAC 61.250 55.000 3.32 0.00 0.00 4.40
310 400 1.512694 GCCTAAACATGCCAGCACC 59.487 57.895 0.00 0.00 0.00 5.01
311 401 1.802636 CCTAAACATGCCAGCACCG 59.197 57.895 0.00 0.00 0.00 4.94
312 402 0.676466 CCTAAACATGCCAGCACCGA 60.676 55.000 0.00 0.00 0.00 4.69
313 403 0.447801 CTAAACATGCCAGCACCGAC 59.552 55.000 0.00 0.00 0.00 4.79
314 404 0.958382 TAAACATGCCAGCACCGACC 60.958 55.000 0.00 0.00 0.00 4.79
317 407 4.760047 ATGCCAGCACCGACCGTC 62.760 66.667 0.00 0.00 0.00 4.79
320 410 4.778415 CCAGCACCGACCGTCGAG 62.778 72.222 22.40 14.55 43.74 4.04
321 411 4.778415 CAGCACCGACCGTCGAGG 62.778 72.222 22.40 13.90 43.74 4.63
324 414 4.477975 CACCGACCGTCGAGGCTC 62.478 72.222 22.40 3.87 43.74 4.70
325 415 4.719106 ACCGACCGTCGAGGCTCT 62.719 66.667 22.40 0.00 43.74 4.09
326 416 2.513204 CCGACCGTCGAGGCTCTA 60.513 66.667 22.40 0.00 43.74 2.43
327 417 2.110967 CCGACCGTCGAGGCTCTAA 61.111 63.158 22.40 0.00 43.74 2.10
328 418 1.062206 CGACCGTCGAGGCTCTAAC 59.938 63.158 16.03 9.65 43.74 2.34
329 419 1.367599 CGACCGTCGAGGCTCTAACT 61.368 60.000 16.03 0.00 43.74 2.24
330 420 0.810016 GACCGTCGAGGCTCTAACTT 59.190 55.000 13.50 0.89 46.52 2.66
332 422 0.526662 CCGTCGAGGCTCTAACTTGT 59.473 55.000 13.50 0.00 0.00 3.16
333 423 1.618861 CGTCGAGGCTCTAACTTGTG 58.381 55.000 13.50 0.00 0.00 3.33
335 425 2.159366 CGTCGAGGCTCTAACTTGTGAT 60.159 50.000 13.50 0.00 0.00 3.06
337 427 4.352887 GTCGAGGCTCTAACTTGTGATAC 58.647 47.826 13.50 0.00 0.00 2.24
338 428 3.380637 TCGAGGCTCTAACTTGTGATACC 59.619 47.826 13.50 0.00 0.00 2.73
339 429 3.491104 CGAGGCTCTAACTTGTGATACCC 60.491 52.174 13.50 0.00 0.00 3.69
340 430 3.450904 AGGCTCTAACTTGTGATACCCA 58.549 45.455 0.00 0.00 0.00 4.51
342 432 3.198872 GCTCTAACTTGTGATACCCAGC 58.801 50.000 0.00 0.00 0.00 4.85
344 434 4.437239 CTCTAACTTGTGATACCCAGCAG 58.563 47.826 0.00 0.00 0.00 4.24
347 437 1.089920 CTTGTGATACCCAGCAGTGC 58.910 55.000 7.13 7.13 0.00 4.40
348 438 0.322456 TTGTGATACCCAGCAGTGCC 60.322 55.000 12.58 0.00 0.00 5.01
351 441 1.452108 GATACCCAGCAGTGCCCAC 60.452 63.158 12.58 0.00 0.00 4.61
352 442 2.893682 GATACCCAGCAGTGCCCACC 62.894 65.000 12.58 0.00 0.00 4.61
354 444 4.601794 CCCAGCAGTGCCCACCAA 62.602 66.667 12.58 0.00 0.00 3.67
355 445 2.987547 CCAGCAGTGCCCACCAAG 60.988 66.667 12.58 0.00 0.00 3.61
358 448 2.203480 GCAGTGCCCACCAAGGAA 60.203 61.111 2.85 0.00 41.22 3.36
359 449 1.832167 GCAGTGCCCACCAAGGAAA 60.832 57.895 2.85 0.00 41.22 3.13
360 450 1.398958 GCAGTGCCCACCAAGGAAAA 61.399 55.000 2.85 0.00 41.22 2.29
361 451 1.341080 CAGTGCCCACCAAGGAAAAT 58.659 50.000 0.00 0.00 41.22 1.82
362 452 2.524306 CAGTGCCCACCAAGGAAAATA 58.476 47.619 0.00 0.00 41.22 1.40
363 453 2.231235 CAGTGCCCACCAAGGAAAATAC 59.769 50.000 0.00 0.00 41.22 1.89
364 454 1.548719 GTGCCCACCAAGGAAAATACC 59.451 52.381 0.00 0.00 41.22 2.73
365 455 1.431243 TGCCCACCAAGGAAAATACCT 59.569 47.619 0.00 0.00 41.22 3.08
367 457 3.076182 TGCCCACCAAGGAAAATACCTTA 59.924 43.478 0.00 0.00 46.94 2.69
368 458 4.264623 TGCCCACCAAGGAAAATACCTTAT 60.265 41.667 0.00 0.00 46.94 1.73
369 459 4.714802 GCCCACCAAGGAAAATACCTTATT 59.285 41.667 0.00 0.00 46.94 1.40
370 460 5.894964 GCCCACCAAGGAAAATACCTTATTA 59.105 40.000 0.00 0.00 46.94 0.98
380 537 9.267071 AGGAAAATACCTTATTAAAAGGCATGT 57.733 29.630 13.25 2.95 41.10 3.21
386 543 6.863275 ACCTTATTAAAAGGCATGTTACAGC 58.137 36.000 13.25 0.00 41.10 4.40
387 544 6.663523 ACCTTATTAAAAGGCATGTTACAGCT 59.336 34.615 13.25 0.00 41.10 4.24
389 546 8.682710 CCTTATTAAAAGGCATGTTACAGCTAA 58.317 33.333 0.00 0.31 0.00 3.09
392 549 8.931385 ATTAAAAGGCATGTTACAGCTAAATG 57.069 30.769 0.00 0.00 0.00 2.32
393 550 4.376340 AAGGCATGTTACAGCTAAATGC 57.624 40.909 1.96 1.96 42.26 3.56
411 568 2.579207 GCTAGGTTAGCGATCACACA 57.421 50.000 0.00 0.00 42.62 3.72
412 569 2.464865 GCTAGGTTAGCGATCACACAG 58.535 52.381 0.00 0.00 42.62 3.66
436 593 1.970640 TCATGCTACTCACACAGTGGT 59.029 47.619 5.31 0.00 35.98 4.16
506 769 2.113774 TGGAGCTTGTGCAGTGGG 59.886 61.111 0.00 0.00 42.74 4.61
566 829 4.000988 TCGAGGCTTTAACCTGTGATTTC 58.999 43.478 0.00 0.00 41.32 2.17
663 1245 1.019673 ATAATGGCTTGAGCGTGCAG 58.980 50.000 0.00 0.00 43.26 4.41
805 1418 1.045350 TATGCTTCCGCCAGAGCTCT 61.045 55.000 11.45 11.45 36.60 4.09
806 1419 2.202864 GCTTCCGCCAGAGCTCTC 60.203 66.667 14.96 2.32 36.60 3.20
854 1467 3.483421 GGAGATGTGATGGCATGATTCA 58.517 45.455 3.81 0.00 0.00 2.57
1135 4662 2.140065 CACGATGTGCGATGGTCTAT 57.860 50.000 0.00 0.00 44.57 1.98
1145 4672 2.362397 GCGATGGTCTATGGACTCTTGA 59.638 50.000 9.27 0.00 41.82 3.02
1152 4679 6.542821 TGGTCTATGGACTCTTGAAAACATT 58.457 36.000 9.27 0.00 41.82 2.71
1167 6778 9.350357 CTTGAAAACATTTATGATGGTCTTGAG 57.650 33.333 0.00 0.00 0.00 3.02
1208 6819 1.073199 ACCAAGTTTGCTCCTCCCG 59.927 57.895 0.00 0.00 0.00 5.14
1479 7097 3.181457 CCAAGGCAAGAGAGATCTGCATA 60.181 47.826 0.00 0.00 0.00 3.14
1511 7129 2.301296 AGTCCACACTCCATCTCTTGTG 59.699 50.000 0.00 0.00 39.28 3.33
1573 7194 4.588528 AGGCATTTTACAAGAAGAAGGCAA 59.411 37.500 0.00 0.00 31.10 4.52
1620 7244 4.081420 CAGGAGTTAGAGTACAGCATTGGT 60.081 45.833 0.00 0.00 0.00 3.67
1722 7349 7.613411 TCATAGATACTCCACATCATCCTACTG 59.387 40.741 0.00 0.00 0.00 2.74
1732 7359 1.069204 TCATCCTACTGCCTGCGATTC 59.931 52.381 0.00 0.00 0.00 2.52
1771 7398 3.929610 GGATGAGCCGATCTTAATACAGC 59.070 47.826 0.00 0.00 0.00 4.40
1857 7497 4.092529 CCATCTCAGATTTTGCGATATCGG 59.907 45.833 25.51 8.53 40.23 4.18
1866 7507 7.328493 CAGATTTTGCGATATCGGTAACATCTA 59.672 37.037 25.51 2.34 40.23 1.98
1871 7512 5.646360 TGCGATATCGGTAACATCTATCTCA 59.354 40.000 25.51 7.61 40.23 3.27
1887 7562 7.369803 TCTATCTCAGCTTTGTGATTTTGAC 57.630 36.000 0.00 0.00 0.00 3.18
1888 7563 7.164122 TCTATCTCAGCTTTGTGATTTTGACT 58.836 34.615 0.00 0.00 0.00 3.41
1914 7589 9.040939 TCGTCATGTATTTATATGGTTCTGTTG 57.959 33.333 0.00 0.00 0.00 3.33
1966 7641 9.814899 TTTTGTGGTAAATGATTATAGCAATGG 57.185 29.630 0.00 0.00 31.97 3.16
1986 7661 4.769688 TGGTGTTAGATCTACATGCAAGG 58.230 43.478 0.67 0.00 0.00 3.61
2281 8900 0.985490 AGACTTGGAGGGGAGCCATC 60.985 60.000 0.00 0.00 34.90 3.51
2291 8910 1.005037 GGAGCCATCGACACACACA 60.005 57.895 0.00 0.00 0.00 3.72
2358 12496 2.419198 GATCCATCAGCGTCGCCT 59.581 61.111 14.86 0.00 0.00 5.52
2363 12501 3.134792 ATCAGCGTCGCCTCGAGT 61.135 61.111 14.86 0.00 36.23 4.18
2403 12541 1.006805 GTCATCGCCCAGGAGATCG 60.007 63.158 0.00 0.00 32.49 3.69
2436 12574 0.674534 CGAAGCGCCCTATAGTTCCT 59.325 55.000 2.29 0.00 0.00 3.36
2466 12604 2.005960 GATGTCCCGGTCACCTCGAG 62.006 65.000 5.13 5.13 0.00 4.04
2478 12616 0.616111 ACCTCGAGTGGCAGATCCTT 60.616 55.000 12.31 0.00 35.26 3.36
2481 12619 1.227089 CGAGTGGCAGATCCTTCGG 60.227 63.158 0.00 0.00 38.27 4.30
2498 12636 2.273449 GACATGTCCCCCAGCCTG 59.727 66.667 15.31 0.00 0.00 4.85
2501 12639 3.017581 ATGTCCCCCAGCCTGGTC 61.018 66.667 10.47 0.00 35.17 4.02
2586 12724 2.311463 CATCCTCTATGTCGACACCCT 58.689 52.381 22.71 8.01 0.00 4.34
2623 12761 1.546961 CCTCGCTCCCGGATTATACT 58.453 55.000 0.73 0.00 34.56 2.12
2676 12878 3.021695 GGAAACCAGGCCATTACCTAAC 58.978 50.000 5.01 0.00 38.26 2.34
2692 12894 5.873146 ACCTAACTCCAGCTTAAGATACC 57.127 43.478 6.67 0.00 0.00 2.73
2698 12900 1.270358 CCAGCTTAAGATACCGCTCCC 60.270 57.143 6.67 0.00 0.00 4.30
2700 12902 2.116238 AGCTTAAGATACCGCTCCCAA 58.884 47.619 6.67 0.00 0.00 4.12
2701 12903 2.103263 AGCTTAAGATACCGCTCCCAAG 59.897 50.000 6.67 0.00 0.00 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
187 191 1.350193 CACCGTGTGAGTAGCATGAC 58.650 55.000 0.00 0.00 35.23 3.06
188 192 0.246360 CCACCGTGTGAGTAGCATGA 59.754 55.000 0.00 0.00 35.23 3.07
189 193 0.740868 CCCACCGTGTGAGTAGCATG 60.741 60.000 5.71 0.00 35.23 4.06
190 194 1.192146 ACCCACCGTGTGAGTAGCAT 61.192 55.000 5.71 0.00 35.23 3.79
191 195 1.835267 ACCCACCGTGTGAGTAGCA 60.835 57.895 5.71 0.00 35.23 3.49
193 197 1.292223 CCACCCACCGTGTGAGTAG 59.708 63.158 5.71 0.00 41.26 2.57
194 198 2.874664 GCCACCCACCGTGTGAGTA 61.875 63.158 5.71 0.00 41.26 2.59
195 199 4.250305 GCCACCCACCGTGTGAGT 62.250 66.667 5.71 0.00 41.26 3.41
196 200 3.941188 AGCCACCCACCGTGTGAG 61.941 66.667 5.71 0.00 41.26 3.51
197 201 4.248842 CAGCCACCCACCGTGTGA 62.249 66.667 5.71 0.00 41.26 3.58
198 202 3.765894 TTCAGCCACCCACCGTGTG 62.766 63.158 0.00 0.00 41.26 3.82
199 203 2.958578 CTTTCAGCCACCCACCGTGT 62.959 60.000 0.00 0.00 41.26 4.49
202 206 3.365265 GCTTTCAGCCACCCACCG 61.365 66.667 0.00 0.00 34.48 4.94
211 215 2.880890 TCTTCAGTTTGAGGCTTTCAGC 59.119 45.455 0.00 0.00 41.46 4.26
212 216 5.458891 CATTCTTCAGTTTGAGGCTTTCAG 58.541 41.667 0.00 0.00 37.07 3.02
213 217 4.279169 CCATTCTTCAGTTTGAGGCTTTCA 59.721 41.667 0.00 0.00 0.00 2.69
214 218 4.321527 CCCATTCTTCAGTTTGAGGCTTTC 60.322 45.833 0.00 0.00 0.00 2.62
215 219 3.575687 CCCATTCTTCAGTTTGAGGCTTT 59.424 43.478 0.00 0.00 0.00 3.51
217 221 2.556114 CCCCATTCTTCAGTTTGAGGCT 60.556 50.000 0.00 0.00 0.00 4.58
218 222 1.821136 CCCCATTCTTCAGTTTGAGGC 59.179 52.381 0.00 0.00 0.00 4.70
219 223 3.439857 TCCCCATTCTTCAGTTTGAGG 57.560 47.619 0.00 0.00 0.00 3.86
220 224 5.945784 TGTTATCCCCATTCTTCAGTTTGAG 59.054 40.000 0.00 0.00 0.00 3.02
225 315 3.873910 CGTGTTATCCCCATTCTTCAGT 58.126 45.455 0.00 0.00 0.00 3.41
226 316 2.614057 GCGTGTTATCCCCATTCTTCAG 59.386 50.000 0.00 0.00 0.00 3.02
227 317 2.238646 AGCGTGTTATCCCCATTCTTCA 59.761 45.455 0.00 0.00 0.00 3.02
231 321 2.325583 TCAGCGTGTTATCCCCATTC 57.674 50.000 0.00 0.00 0.00 2.67
236 326 1.084289 GTGGTTCAGCGTGTTATCCC 58.916 55.000 0.00 0.00 0.00 3.85
237 327 2.094762 AGTGGTTCAGCGTGTTATCC 57.905 50.000 0.00 0.00 0.00 2.59
239 329 3.997762 TGTTAGTGGTTCAGCGTGTTAT 58.002 40.909 0.00 0.00 0.00 1.89
240 330 3.455990 TGTTAGTGGTTCAGCGTGTTA 57.544 42.857 0.00 0.00 0.00 2.41
243 333 2.412870 TCATGTTAGTGGTTCAGCGTG 58.587 47.619 0.00 0.00 0.00 5.34
245 335 3.935203 AGATTCATGTTAGTGGTTCAGCG 59.065 43.478 0.00 0.00 0.00 5.18
247 337 6.605849 CACAAGATTCATGTTAGTGGTTCAG 58.394 40.000 0.00 0.00 0.00 3.02
249 339 5.048782 TGCACAAGATTCATGTTAGTGGTTC 60.049 40.000 0.00 0.00 0.00 3.62
250 340 4.826733 TGCACAAGATTCATGTTAGTGGTT 59.173 37.500 0.00 0.00 0.00 3.67
252 342 4.456911 ACTGCACAAGATTCATGTTAGTGG 59.543 41.667 7.51 0.00 29.46 4.00
253 343 5.388111 CACTGCACAAGATTCATGTTAGTG 58.612 41.667 15.74 15.74 37.21 2.74
255 345 4.696877 TCCACTGCACAAGATTCATGTTAG 59.303 41.667 0.00 0.00 0.00 2.34
259 349 3.945921 AGATCCACTGCACAAGATTCATG 59.054 43.478 0.00 0.00 0.00 3.07
262 352 3.755378 ACAAGATCCACTGCACAAGATTC 59.245 43.478 0.00 0.00 0.00 2.52
264 354 3.430042 ACAAGATCCACTGCACAAGAT 57.570 42.857 0.00 0.00 0.00 2.40
265 355 2.936919 ACAAGATCCACTGCACAAGA 57.063 45.000 0.00 0.00 0.00 3.02
267 357 2.622942 GGAAACAAGATCCACTGCACAA 59.377 45.455 0.00 0.00 36.92 3.33
269 359 1.197721 CGGAAACAAGATCCACTGCAC 59.802 52.381 0.00 0.00 36.74 4.57
271 361 1.197721 CACGGAAACAAGATCCACTGC 59.802 52.381 0.00 0.00 36.74 4.40
274 364 0.521735 GCCACGGAAACAAGATCCAC 59.478 55.000 0.00 0.00 36.74 4.02
275 365 0.608035 GGCCACGGAAACAAGATCCA 60.608 55.000 0.00 0.00 36.74 3.41
276 366 0.322546 AGGCCACGGAAACAAGATCC 60.323 55.000 5.01 0.00 0.00 3.36
277 367 2.396590 TAGGCCACGGAAACAAGATC 57.603 50.000 5.01 0.00 0.00 2.75
278 368 2.817844 GTTTAGGCCACGGAAACAAGAT 59.182 45.455 5.01 0.00 34.04 2.40
279 369 2.223745 GTTTAGGCCACGGAAACAAGA 58.776 47.619 5.01 0.00 34.04 3.02
280 370 1.950909 TGTTTAGGCCACGGAAACAAG 59.049 47.619 17.71 0.00 39.46 3.16
281 371 2.054232 TGTTTAGGCCACGGAAACAA 57.946 45.000 17.71 6.68 39.46 2.83
282 372 1.883275 CATGTTTAGGCCACGGAAACA 59.117 47.619 20.56 20.56 44.63 2.83
283 373 1.402325 GCATGTTTAGGCCACGGAAAC 60.402 52.381 5.01 10.37 34.37 2.78
284 374 0.885196 GCATGTTTAGGCCACGGAAA 59.115 50.000 5.01 0.00 0.00 3.13
285 375 2.562125 GCATGTTTAGGCCACGGAA 58.438 52.632 5.01 0.00 0.00 4.30
286 376 4.312052 GCATGTTTAGGCCACGGA 57.688 55.556 5.01 0.00 0.00 4.69
292 382 1.512694 GGTGCTGGCATGTTTAGGC 59.487 57.895 0.00 0.00 0.00 3.93
293 383 0.676466 TCGGTGCTGGCATGTTTAGG 60.676 55.000 0.00 0.00 0.00 2.69
294 384 0.447801 GTCGGTGCTGGCATGTTTAG 59.552 55.000 0.00 0.00 0.00 1.85
297 387 2.672996 GGTCGGTGCTGGCATGTT 60.673 61.111 0.00 0.00 0.00 2.71
300 390 4.760047 GACGGTCGGTGCTGGCAT 62.760 66.667 0.00 0.00 0.00 4.40
303 393 4.778415 CTCGACGGTCGGTGCTGG 62.778 72.222 28.07 9.63 40.88 4.85
307 397 4.477975 GAGCCTCGACGGTCGGTG 62.478 72.222 28.07 20.04 40.88 4.94
309 399 2.110967 TTAGAGCCTCGACGGTCGG 61.111 63.158 28.07 18.67 40.88 4.79
310 400 1.062206 GTTAGAGCCTCGACGGTCG 59.938 63.158 23.73 23.73 42.10 4.79
311 401 0.810016 AAGTTAGAGCCTCGACGGTC 59.190 55.000 5.60 5.60 34.25 4.79
312 402 0.526662 CAAGTTAGAGCCTCGACGGT 59.473 55.000 0.00 0.00 34.25 4.83
313 403 0.526662 ACAAGTTAGAGCCTCGACGG 59.473 55.000 0.00 0.00 0.00 4.79
314 404 1.199327 TCACAAGTTAGAGCCTCGACG 59.801 52.381 0.00 0.00 0.00 5.12
315 405 3.512033 ATCACAAGTTAGAGCCTCGAC 57.488 47.619 0.00 0.00 0.00 4.20
317 407 3.491104 GGGTATCACAAGTTAGAGCCTCG 60.491 52.174 0.00 0.00 0.00 4.63
319 409 3.450904 TGGGTATCACAAGTTAGAGCCT 58.549 45.455 0.00 0.00 0.00 4.58
320 410 3.798202 CTGGGTATCACAAGTTAGAGCC 58.202 50.000 0.00 0.00 0.00 4.70
321 411 3.198872 GCTGGGTATCACAAGTTAGAGC 58.801 50.000 0.00 0.00 0.00 4.09
322 412 4.081420 ACTGCTGGGTATCACAAGTTAGAG 60.081 45.833 0.00 0.00 0.00 2.43
324 414 3.935203 CACTGCTGGGTATCACAAGTTAG 59.065 47.826 0.00 0.00 0.00 2.34
325 415 3.868369 GCACTGCTGGGTATCACAAGTTA 60.868 47.826 0.00 0.00 0.00 2.24
326 416 2.783135 CACTGCTGGGTATCACAAGTT 58.217 47.619 0.00 0.00 0.00 2.66
327 417 1.611673 GCACTGCTGGGTATCACAAGT 60.612 52.381 0.00 0.00 0.00 3.16
328 418 1.089920 GCACTGCTGGGTATCACAAG 58.910 55.000 0.00 0.00 0.00 3.16
329 419 0.322456 GGCACTGCTGGGTATCACAA 60.322 55.000 0.00 0.00 0.00 3.33
330 420 1.299648 GGCACTGCTGGGTATCACA 59.700 57.895 0.00 0.00 0.00 3.58
332 422 1.922881 TGGGCACTGCTGGGTATCA 60.923 57.895 0.00 0.00 0.00 2.15
333 423 1.452108 GTGGGCACTGCTGGGTATC 60.452 63.158 0.00 0.00 0.00 2.24
335 425 3.646715 GGTGGGCACTGCTGGGTA 61.647 66.667 0.00 0.00 0.00 3.69
337 427 4.601794 TTGGTGGGCACTGCTGGG 62.602 66.667 0.00 0.00 0.00 4.45
338 428 2.987547 CTTGGTGGGCACTGCTGG 60.988 66.667 0.00 0.00 0.00 4.85
339 429 2.981914 TTCCTTGGTGGGCACTGCTG 62.982 60.000 0.00 0.00 36.20 4.41
340 430 2.296945 TTTCCTTGGTGGGCACTGCT 62.297 55.000 0.00 0.00 36.20 4.24
342 432 1.341080 ATTTTCCTTGGTGGGCACTG 58.659 50.000 0.00 0.00 36.20 3.66
344 434 1.548719 GGTATTTTCCTTGGTGGGCAC 59.451 52.381 0.00 0.00 36.20 5.01
347 437 7.964666 TTAATAAGGTATTTTCCTTGGTGGG 57.035 36.000 8.06 0.00 45.96 4.61
348 438 9.869757 CTTTTAATAAGGTATTTTCCTTGGTGG 57.130 33.333 8.06 0.00 45.96 4.61
351 441 8.536175 TGCCTTTTAATAAGGTATTTTCCTTGG 58.464 33.333 14.16 1.06 45.96 3.61
354 444 9.267071 ACATGCCTTTTAATAAGGTATTTTCCT 57.733 29.630 13.39 0.00 40.13 3.36
355 445 9.884636 AACATGCCTTTTAATAAGGTATTTTCC 57.115 29.630 13.39 0.00 40.13 3.13
360 450 8.630037 GCTGTAACATGCCTTTTAATAAGGTAT 58.370 33.333 14.16 12.80 42.35 2.73
361 451 7.832187 AGCTGTAACATGCCTTTTAATAAGGTA 59.168 33.333 14.16 11.53 39.60 3.08
362 452 6.663523 AGCTGTAACATGCCTTTTAATAAGGT 59.336 34.615 14.16 2.23 39.60 3.50
363 453 7.100458 AGCTGTAACATGCCTTTTAATAAGG 57.900 36.000 10.40 10.40 40.39 2.69
367 457 7.492344 GCATTTAGCTGTAACATGCCTTTTAAT 59.508 33.333 0.00 0.00 41.15 1.40
368 458 6.811170 GCATTTAGCTGTAACATGCCTTTTAA 59.189 34.615 0.00 0.00 41.15 1.52
369 459 6.329496 GCATTTAGCTGTAACATGCCTTTTA 58.671 36.000 0.00 0.00 41.15 1.52
370 460 5.170748 GCATTTAGCTGTAACATGCCTTTT 58.829 37.500 0.00 0.00 41.15 2.27
390 547 7.904257 CACTGTGTGATCGCTAACCTAGCAT 62.904 48.000 7.94 0.00 43.13 3.79
392 549 4.279808 CACTGTGTGATCGCTAACCTAGC 61.280 52.174 7.94 0.00 41.15 3.42
393 550 3.439293 CACTGTGTGATCGCTAACCTAG 58.561 50.000 7.94 0.00 35.23 3.02
394 551 2.165641 CCACTGTGTGATCGCTAACCTA 59.834 50.000 7.94 0.00 35.23 3.08
395 552 1.066858 CCACTGTGTGATCGCTAACCT 60.067 52.381 7.94 0.00 35.23 3.50
396 553 1.337823 ACCACTGTGTGATCGCTAACC 60.338 52.381 7.94 0.00 35.23 2.85
397 554 1.993370 GACCACTGTGTGATCGCTAAC 59.007 52.381 7.94 0.00 35.23 2.34
399 556 1.253100 TGACCACTGTGTGATCGCTA 58.747 50.000 7.94 0.00 35.23 4.26
400 557 0.610174 ATGACCACTGTGTGATCGCT 59.390 50.000 7.94 0.00 35.23 4.93
401 558 0.723414 CATGACCACTGTGTGATCGC 59.277 55.000 7.08 0.00 35.23 4.58
403 560 2.105006 AGCATGACCACTGTGTGATC 57.895 50.000 7.08 2.37 35.23 2.92
404 561 2.568956 AGTAGCATGACCACTGTGTGAT 59.431 45.455 7.08 0.00 35.23 3.06
405 562 1.970640 AGTAGCATGACCACTGTGTGA 59.029 47.619 7.08 0.00 35.23 3.58
406 563 2.289010 TGAGTAGCATGACCACTGTGTG 60.289 50.000 7.08 0.00 0.00 3.82
407 564 1.970640 TGAGTAGCATGACCACTGTGT 59.029 47.619 7.08 0.00 0.00 3.72
408 565 2.289010 TGTGAGTAGCATGACCACTGTG 60.289 50.000 0.00 0.00 0.00 3.66
409 566 1.970640 TGTGAGTAGCATGACCACTGT 59.029 47.619 0.00 0.00 0.00 3.55
410 567 2.289010 TGTGTGAGTAGCATGACCACTG 60.289 50.000 0.00 0.00 0.00 3.66
411 568 1.970640 TGTGTGAGTAGCATGACCACT 59.029 47.619 0.00 0.00 0.00 4.00
412 569 2.289072 ACTGTGTGAGTAGCATGACCAC 60.289 50.000 0.00 0.00 30.86 4.16
566 829 1.604593 CCTTGGTGGGCACTCTTGG 60.605 63.158 0.00 0.00 0.00 3.61
663 1245 6.425504 CAGCAAGAACTAGCATTAGCATAAC 58.574 40.000 0.00 0.00 45.49 1.89
752 1361 3.614616 CCTAAAGTCGTCTCATGTTCAGC 59.385 47.826 0.00 0.00 0.00 4.26
805 1418 4.709886 TGCTGTCTACTTACTATGCCTTGA 59.290 41.667 0.00 0.00 0.00 3.02
806 1419 5.011090 TGCTGTCTACTTACTATGCCTTG 57.989 43.478 0.00 0.00 0.00 3.61
854 1467 6.379133 AGTTGCATTTGATTGGTAGACATGAT 59.621 34.615 0.00 0.00 0.00 2.45
1135 4662 7.451255 ACCATCATAAATGTTTTCAAGAGTCCA 59.549 33.333 0.00 0.00 0.00 4.02
1145 4672 7.890127 TCTCCTCAAGACCATCATAAATGTTTT 59.110 33.333 0.00 0.00 0.00 2.43
1152 4679 4.895889 ACGATCTCCTCAAGACCATCATAA 59.104 41.667 0.00 0.00 36.65 1.90
1167 6778 2.280628 CTTGGTAGGCAAACGATCTCC 58.719 52.381 0.00 0.00 0.00 3.71
1208 6819 2.295885 CATCCAACATCTTCCTCTGCC 58.704 52.381 0.00 0.00 0.00 4.85
1253 6864 5.355596 GCATGTAGTTGCAGAGATCTAACT 58.644 41.667 12.16 12.16 42.31 2.24
1479 7097 3.744660 GAGTGTGGACTCCAACAGAAAT 58.255 45.455 0.00 0.00 42.66 2.17
1511 7129 4.614306 GCTTTGGCATTTCAATTTGCTTCC 60.614 41.667 0.22 0.00 38.88 3.46
1573 7194 1.896220 TGCTCCTTCTCGCAAACAAT 58.104 45.000 0.00 0.00 32.40 2.71
1620 7244 3.109928 TCCTGCTCCATTCTGAAGATCA 58.890 45.455 0.00 0.00 0.00 2.92
1732 7359 1.137404 CCTCAAAAAGGCGGATGCG 59.863 57.895 0.65 0.65 44.10 4.73
1771 7398 9.882996 CATTTGTACTGTATACATATGGCAAAG 57.117 33.333 5.91 0.85 35.04 2.77
1857 7497 8.430801 AATCACAAAGCTGAGATAGATGTTAC 57.569 34.615 0.00 0.00 32.38 2.50
1866 7507 5.106791 CGAGTCAAAATCACAAAGCTGAGAT 60.107 40.000 0.00 0.00 34.71 2.75
1871 7512 3.876914 TGACGAGTCAAAATCACAAAGCT 59.123 39.130 3.11 0.00 36.53 3.74
1887 7562 8.818141 ACAGAACCATATAAATACATGACGAG 57.182 34.615 0.00 0.00 0.00 4.18
1888 7563 9.040939 CAACAGAACCATATAAATACATGACGA 57.959 33.333 0.00 0.00 0.00 4.20
1914 7589 7.209471 TGAAACCTGTAACACAAACCATATC 57.791 36.000 0.00 0.00 0.00 1.63
1966 7641 4.446371 AGCCTTGCATGTAGATCTAACAC 58.554 43.478 3.40 0.00 0.00 3.32
2281 8900 3.428870 GTGAGACCTTATTGTGTGTGTCG 59.571 47.826 0.00 0.00 0.00 4.35
2291 8910 5.711976 CCATTCCTTGTTGTGAGACCTTATT 59.288 40.000 0.00 0.00 0.00 1.40
2332 12470 1.221414 GCTGATGGATCCTTGCGTAC 58.779 55.000 14.23 0.00 0.00 3.67
2358 12496 1.002990 TACGCCTGTCCTCACTCGA 60.003 57.895 0.00 0.00 0.00 4.04
2436 12574 1.065491 CCGGGACATCTGACCAATCAA 60.065 52.381 0.00 0.00 33.30 2.57
2481 12619 2.273449 CAGGCTGGGGGACATGTC 59.727 66.667 17.91 17.91 0.00 3.06
2513 12651 2.033299 GGTGCACCATAATCCAATGACG 59.967 50.000 31.23 0.00 35.64 4.35
2586 12724 2.302587 GGGATTTCCACCCTGTCAAA 57.697 50.000 0.00 0.00 43.65 2.69
2676 12878 2.288518 GGAGCGGTATCTTAAGCTGGAG 60.289 54.545 0.00 0.00 40.39 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.