Multiple sequence alignment - TraesCS3D01G487800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G487800 chr3D 100.000 2674 0 0 419 3092 582992468 582989795 0.000000e+00 4939
1 TraesCS3D01G487800 chr3D 85.176 1619 165 44 484 2047 583001991 583000393 0.000000e+00 1591
2 TraesCS3D01G487800 chr3D 85.210 1332 128 32 701 1983 582910013 582908702 0.000000e+00 1304
3 TraesCS3D01G487800 chr3D 84.610 1332 136 31 701 1983 582921160 582919849 0.000000e+00 1260
4 TraesCS3D01G487800 chr3D 84.900 1298 122 38 674 1926 582922449 582921181 0.000000e+00 1243
5 TraesCS3D01G487800 chr3D 83.014 1460 154 53 732 2139 582899940 582898523 0.000000e+00 1236
6 TraesCS3D01G487800 chr3D 82.603 1460 152 57 732 2139 582930354 582928945 0.000000e+00 1195
7 TraesCS3D01G487800 chr3D 89.603 731 58 9 1695 2415 583009058 583008336 0.000000e+00 913
8 TraesCS3D01G487800 chr3D 89.465 598 56 5 1064 1659 583009648 583009056 0.000000e+00 749
9 TraesCS3D01G487800 chr3D 90.741 486 36 4 2440 2925 583008205 583007729 9.350000e-180 640
10 TraesCS3D01G487800 chr3D 100.000 180 0 0 1 180 582992886 582992707 1.780000e-87 333
11 TraesCS3D01G487800 chr3B 83.361 1214 151 40 866 2047 779646272 779645078 0.000000e+00 1075
12 TraesCS3D01G487800 chr3B 82.567 1239 141 40 863 2047 779694339 779693122 0.000000e+00 1022
13 TraesCS3D01G487800 chr3B 82.180 1257 141 38 863 2059 780061259 780060026 0.000000e+00 1003
14 TraesCS3D01G487800 chr3B 82.008 1245 145 33 863 2049 779714353 779713130 0.000000e+00 985
15 TraesCS3D01G487800 chr3B 89.518 706 55 13 2224 2925 780131723 780131033 0.000000e+00 876
16 TraesCS3D01G487800 chr3B 82.687 1005 141 30 1064 2050 779989571 779988582 0.000000e+00 861
17 TraesCS3D01G487800 chr3B 91.960 597 43 3 1064 1659 779804985 779804393 0.000000e+00 832
18 TraesCS3D01G487800 chr3B 88.210 704 67 12 2224 2925 779803865 779803176 0.000000e+00 826
19 TraesCS3D01G487800 chr3B 88.119 707 65 13 2224 2925 780080067 780079375 0.000000e+00 822
20 TraesCS3D01G487800 chr3B 91.472 598 44 5 1064 1659 780048815 780048223 0.000000e+00 815
21 TraesCS3D01G487800 chr3B 87.642 704 75 6 2224 2925 779961883 779961190 0.000000e+00 808
22 TraesCS3D01G487800 chr3B 88.023 693 64 10 2224 2914 780047699 780047024 0.000000e+00 802
23 TraesCS3D01G487800 chr3B 89.649 599 56 4 1062 1659 780132835 780132242 0.000000e+00 758
24 TraesCS3D01G487800 chr3B 89.615 597 55 5 1064 1659 780081154 780080564 0.000000e+00 752
25 TraesCS3D01G487800 chr3B 90.965 487 38 4 2440 2925 780246840 780246359 0.000000e+00 651
26 TraesCS3D01G487800 chr3B 86.667 555 60 7 2373 2926 779930337 779929796 1.230000e-168 603
27 TraesCS3D01G487800 chr3B 88.337 463 48 3 2458 2920 779987039 779986583 4.510000e-153 551
28 TraesCS3D01G487800 chr3B 86.055 545 37 15 1695 2206 780247546 780247008 1.620000e-152 549
29 TraesCS3D01G487800 chr3B 93.085 376 18 3 1695 2062 780048225 780047850 7.540000e-151 544
30 TraesCS3D01G487800 chr3B 86.100 518 56 12 1695 2204 780080566 780080057 7.540000e-151 544
31 TraesCS3D01G487800 chr3B 86.364 528 35 16 1695 2191 779962407 779961886 2.710000e-150 542
32 TraesCS3D01G487800 chr3B 92.141 369 24 3 1695 2059 780132244 780131877 1.640000e-142 516
33 TraesCS3D01G487800 chrUn 88.038 418 43 3 2509 2925 388576066 388575655 3.580000e-134 488
34 TraesCS3D01G487800 chrUn 81.140 228 26 7 863 1073 41611070 41610843 1.910000e-37 167
35 TraesCS3D01G487800 chr1D 98.266 173 2 1 2915 3087 282945093 282944922 5.010000e-78 302
36 TraesCS3D01G487800 chr2D 99.390 164 1 0 2924 3087 83920436 83920599 6.480000e-77 298
37 TraesCS3D01G487800 chr2D 95.833 168 7 0 2920 3087 391812342 391812509 3.930000e-69 272
38 TraesCS3D01G487800 chr7D 98.193 166 3 0 2924 3089 60706390 60706225 1.080000e-74 291
39 TraesCS3D01G487800 chr7D 96.407 167 6 0 2920 3086 13298344 13298510 3.040000e-70 276
40 TraesCS3D01G487800 chr4D 98.160 163 3 0 2924 3086 32357082 32357244 5.050000e-73 285
41 TraesCS3D01G487800 chr4D 98.160 163 3 0 2924 3086 292912531 292912693 5.050000e-73 285
42 TraesCS3D01G487800 chr6D 96.319 163 6 0 2924 3086 266777641 266777479 5.080000e-68 268
43 TraesCS3D01G487800 chr2B 95.210 167 8 0 2920 3086 614919053 614919219 6.570000e-67 265


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G487800 chr3D 582989795 582992886 3091 True 2636.000000 4939 100.000000 1 3092 2 chr3D.!!$R6 3091
1 TraesCS3D01G487800 chr3D 583000393 583001991 1598 True 1591.000000 1591 85.176000 484 2047 1 chr3D.!!$R4 1563
2 TraesCS3D01G487800 chr3D 582908702 582910013 1311 True 1304.000000 1304 85.210000 701 1983 1 chr3D.!!$R2 1282
3 TraesCS3D01G487800 chr3D 582919849 582922449 2600 True 1251.500000 1260 84.755000 674 1983 2 chr3D.!!$R5 1309
4 TraesCS3D01G487800 chr3D 582898523 582899940 1417 True 1236.000000 1236 83.014000 732 2139 1 chr3D.!!$R1 1407
5 TraesCS3D01G487800 chr3D 582928945 582930354 1409 True 1195.000000 1195 82.603000 732 2139 1 chr3D.!!$R3 1407
6 TraesCS3D01G487800 chr3D 583007729 583009648 1919 True 767.333333 913 89.936333 1064 2925 3 chr3D.!!$R7 1861
7 TraesCS3D01G487800 chr3B 779645078 779646272 1194 True 1075.000000 1075 83.361000 866 2047 1 chr3B.!!$R1 1181
8 TraesCS3D01G487800 chr3B 779693122 779694339 1217 True 1022.000000 1022 82.567000 863 2047 1 chr3B.!!$R2 1184
9 TraesCS3D01G487800 chr3B 780060026 780061259 1233 True 1003.000000 1003 82.180000 863 2059 1 chr3B.!!$R5 1196
10 TraesCS3D01G487800 chr3B 779713130 779714353 1223 True 985.000000 985 82.008000 863 2049 1 chr3B.!!$R3 1186
11 TraesCS3D01G487800 chr3B 779803176 779804985 1809 True 829.000000 832 90.085000 1064 2925 2 chr3B.!!$R6 1861
12 TraesCS3D01G487800 chr3B 780047024 780048815 1791 True 720.333333 815 90.860000 1064 2914 3 chr3B.!!$R9 1850
13 TraesCS3D01G487800 chr3B 780131033 780132835 1802 True 716.666667 876 90.436000 1062 2925 3 chr3B.!!$R11 1863
14 TraesCS3D01G487800 chr3B 779986583 779989571 2988 True 706.000000 861 85.512000 1064 2920 2 chr3B.!!$R8 1856
15 TraesCS3D01G487800 chr3B 780079375 780081154 1779 True 706.000000 822 87.944667 1064 2925 3 chr3B.!!$R10 1861
16 TraesCS3D01G487800 chr3B 779961190 779962407 1217 True 675.000000 808 87.003000 1695 2925 2 chr3B.!!$R7 1230
17 TraesCS3D01G487800 chr3B 779929796 779930337 541 True 603.000000 603 86.667000 2373 2926 1 chr3B.!!$R4 553
18 TraesCS3D01G487800 chr3B 780246359 780247546 1187 True 600.000000 651 88.510000 1695 2925 2 chr3B.!!$R12 1230

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
672 674 2.10417 AGAAAACCCGGTGCAAAAAGA 58.896 42.857 0.0 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2225 3713 0.030235 GGTCAAGGTTTTGGTGACGC 59.97 55.0 0.0 0.0 42.11 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 9.008965 TGTGTACTATAAAAATGTGCTTGATGT 57.991 29.630 0.00 0.00 0.00 3.06
79 80 9.935682 ATAAAAATGTGCTTGATGTATACGAAG 57.064 29.630 0.00 2.06 0.00 3.79
80 81 7.609760 AAAATGTGCTTGATGTATACGAAGA 57.390 32.000 11.39 0.00 0.00 2.87
81 82 7.609760 AAATGTGCTTGATGTATACGAAGAA 57.390 32.000 11.39 0.99 0.00 2.52
82 83 7.792374 AATGTGCTTGATGTATACGAAGAAT 57.208 32.000 11.39 0.00 0.00 2.40
83 84 7.792374 ATGTGCTTGATGTATACGAAGAATT 57.208 32.000 11.39 0.00 0.00 2.17
84 85 7.003939 TGTGCTTGATGTATACGAAGAATTG 57.996 36.000 11.39 0.00 0.00 2.32
85 86 6.593770 TGTGCTTGATGTATACGAAGAATTGT 59.406 34.615 11.39 0.00 0.00 2.71
86 87 7.762159 TGTGCTTGATGTATACGAAGAATTGTA 59.238 33.333 11.39 0.00 0.00 2.41
87 88 8.765219 GTGCTTGATGTATACGAAGAATTGTAT 58.235 33.333 11.39 0.00 35.55 2.29
88 89 9.974980 TGCTTGATGTATACGAAGAATTGTATA 57.025 29.630 11.39 0.00 33.54 1.47
98 99 7.011828 ACGAAGAATTGTATAATGGAAACCG 57.988 36.000 0.00 0.00 0.00 4.44
99 100 6.819649 ACGAAGAATTGTATAATGGAAACCGA 59.180 34.615 0.00 0.00 0.00 4.69
100 101 7.334921 ACGAAGAATTGTATAATGGAAACCGAA 59.665 33.333 0.00 0.00 0.00 4.30
101 102 8.178964 CGAAGAATTGTATAATGGAAACCGAAA 58.821 33.333 0.00 0.00 0.00 3.46
102 103 9.503427 GAAGAATTGTATAATGGAAACCGAAAG 57.497 33.333 0.00 0.00 0.00 2.62
103 104 8.801882 AGAATTGTATAATGGAAACCGAAAGA 57.198 30.769 0.00 0.00 0.00 2.52
104 105 9.238368 AGAATTGTATAATGGAAACCGAAAGAA 57.762 29.630 0.00 0.00 0.00 2.52
105 106 9.849166 GAATTGTATAATGGAAACCGAAAGAAA 57.151 29.630 0.00 0.00 0.00 2.52
106 107 9.634163 AATTGTATAATGGAAACCGAAAGAAAC 57.366 29.630 0.00 0.00 0.00 2.78
107 108 7.747155 TGTATAATGGAAACCGAAAGAAACA 57.253 32.000 0.00 0.00 0.00 2.83
108 109 8.167605 TGTATAATGGAAACCGAAAGAAACAA 57.832 30.769 0.00 0.00 0.00 2.83
109 110 8.630917 TGTATAATGGAAACCGAAAGAAACAAA 58.369 29.630 0.00 0.00 0.00 2.83
110 111 9.124807 GTATAATGGAAACCGAAAGAAACAAAG 57.875 33.333 0.00 0.00 0.00 2.77
111 112 5.845391 ATGGAAACCGAAAGAAACAAAGA 57.155 34.783 0.00 0.00 0.00 2.52
112 113 5.646577 TGGAAACCGAAAGAAACAAAGAA 57.353 34.783 0.00 0.00 0.00 2.52
113 114 6.026947 TGGAAACCGAAAGAAACAAAGAAA 57.973 33.333 0.00 0.00 0.00 2.52
114 115 6.456501 TGGAAACCGAAAGAAACAAAGAAAA 58.543 32.000 0.00 0.00 0.00 2.29
115 116 7.100409 TGGAAACCGAAAGAAACAAAGAAAAT 58.900 30.769 0.00 0.00 0.00 1.82
116 117 7.604545 TGGAAACCGAAAGAAACAAAGAAAATT 59.395 29.630 0.00 0.00 0.00 1.82
117 118 9.089601 GGAAACCGAAAGAAACAAAGAAAATTA 57.910 29.630 0.00 0.00 0.00 1.40
155 156 9.946418 AAAAAGAAACGAAAGACAATAAAAACG 57.054 25.926 0.00 0.00 0.00 3.60
156 157 8.898983 AAAGAAACGAAAGACAATAAAAACGA 57.101 26.923 0.00 0.00 0.00 3.85
157 158 8.898983 AAGAAACGAAAGACAATAAAAACGAA 57.101 26.923 0.00 0.00 0.00 3.85
158 159 8.898983 AGAAACGAAAGACAATAAAAACGAAA 57.101 26.923 0.00 0.00 0.00 3.46
159 160 9.344309 AGAAACGAAAGACAATAAAAACGAAAA 57.656 25.926 0.00 0.00 0.00 2.29
160 161 9.940518 GAAACGAAAGACAATAAAAACGAAAAA 57.059 25.926 0.00 0.00 0.00 1.94
161 162 9.946418 AAACGAAAGACAATAAAAACGAAAAAG 57.054 25.926 0.00 0.00 0.00 2.27
162 163 8.898983 ACGAAAGACAATAAAAACGAAAAAGA 57.101 26.923 0.00 0.00 0.00 2.52
163 164 9.344309 ACGAAAGACAATAAAAACGAAAAAGAA 57.656 25.926 0.00 0.00 0.00 2.52
168 169 9.425577 AGACAATAAAAACGAAAAAGAAAACCA 57.574 25.926 0.00 0.00 0.00 3.67
179 180 9.647797 ACGAAAAAGAAAACCAAAGAAATAAGT 57.352 25.926 0.00 0.00 0.00 2.24
501 502 9.840427 AATTAGATATGTGTTGAAGAAAAACGG 57.160 29.630 0.00 0.00 0.00 4.44
509 510 8.934507 TGTGTTGAAGAAAAACGGAAAATAAT 57.065 26.923 0.00 0.00 0.00 1.28
512 513 7.042389 TGTTGAAGAAAAACGGAAAATAATGGC 60.042 33.333 0.00 0.00 0.00 4.40
520 521 2.162608 CGGAAAATAATGGCAACCGACA 59.837 45.455 0.00 0.00 41.09 4.35
534 535 5.694458 GGCAACCGACAAAGAAACATAAATT 59.306 36.000 0.00 0.00 0.00 1.82
559 560 7.552458 AAACAAAGCAAACCAATAAGAAAGG 57.448 32.000 0.00 0.00 0.00 3.11
560 561 5.056480 ACAAAGCAAACCAATAAGAAAGGC 58.944 37.500 0.00 0.00 0.00 4.35
564 565 5.299949 AGCAAACCAATAAGAAAGGCAAAG 58.700 37.500 0.00 0.00 0.00 2.77
566 567 5.757808 GCAAACCAATAAGAAAGGCAAAGAA 59.242 36.000 0.00 0.00 0.00 2.52
576 577 3.710326 AAGGCAAAGAAAACCGAAGTC 57.290 42.857 0.00 0.00 0.00 3.01
577 578 2.932261 AGGCAAAGAAAACCGAAGTCT 58.068 42.857 0.00 0.00 0.00 3.24
580 581 4.275196 AGGCAAAGAAAACCGAAGTCTAAC 59.725 41.667 0.00 0.00 0.00 2.34
581 582 4.035909 GGCAAAGAAAACCGAAGTCTAACA 59.964 41.667 0.00 0.00 0.00 2.41
585 587 4.386711 AGAAAACCGAAGTCTAACAAGGG 58.613 43.478 0.00 0.00 0.00 3.95
590 592 4.784177 ACCGAAGTCTAACAAGGGAAAAA 58.216 39.130 0.00 0.00 0.00 1.94
591 593 4.820173 ACCGAAGTCTAACAAGGGAAAAAG 59.180 41.667 0.00 0.00 0.00 2.27
610 612 7.389330 GGAAAAAGAAAAACCAGGAAAGAAACA 59.611 33.333 0.00 0.00 0.00 2.83
611 613 8.684386 AAAAAGAAAAACCAGGAAAGAAACAA 57.316 26.923 0.00 0.00 0.00 2.83
614 616 8.862325 AAGAAAAACCAGGAAAGAAACAAAAT 57.138 26.923 0.00 0.00 0.00 1.82
649 651 5.481824 AGAAAATGGAGGGAACAAGAAATCC 59.518 40.000 0.00 0.00 34.85 3.01
650 652 4.402616 AATGGAGGGAACAAGAAATCCA 57.597 40.909 0.00 0.00 40.86 3.41
658 660 6.582636 AGGGAACAAGAAATCCAAAGAAAAC 58.417 36.000 0.00 0.00 37.46 2.43
671 673 2.595124 AGAAAACCCGGTGCAAAAAG 57.405 45.000 0.00 0.00 0.00 2.27
672 674 2.104170 AGAAAACCCGGTGCAAAAAGA 58.896 42.857 0.00 0.00 0.00 2.52
710 713 3.028130 ACAAACACCCGAAGAAAACCAT 58.972 40.909 0.00 0.00 0.00 3.55
725 733 7.595311 AGAAAACCATGAAAAGAAACACAAC 57.405 32.000 0.00 0.00 0.00 3.32
730 738 9.442047 AAACCATGAAAAGAAACACAACAAATA 57.558 25.926 0.00 0.00 0.00 1.40
855 865 5.239087 GGGATGTAAAACCAACTAACGAACA 59.761 40.000 0.00 0.00 0.00 3.18
876 886 6.645790 ACAAAGAGCAACTGATTCAAAGAT 57.354 33.333 0.00 0.00 0.00 2.40
923 934 4.352009 TGGCACATCATTAAACCTTCCAT 58.648 39.130 0.00 0.00 0.00 3.41
934 946 4.161295 CTTCCATCGGCCGGAGCA 62.161 66.667 27.83 5.87 42.56 4.26
969 997 5.775686 CCGGAACAGATACAAATATCGGTA 58.224 41.667 0.00 0.00 43.04 4.02
1038 1075 1.756408 CTCAGGCGAGCCATCCATCT 61.756 60.000 17.18 0.00 38.92 2.90
1039 1076 1.147824 CAGGCGAGCCATCCATCTT 59.852 57.895 17.18 0.00 38.92 2.40
1078 1132 2.629656 GCAAGAGCAACCATGGCGT 61.630 57.895 13.04 0.00 41.58 5.68
1288 1343 1.122019 AGAAGAGGCCAACACCGTCT 61.122 55.000 5.01 0.00 33.69 4.18
1465 1520 4.111916 CAAGTTTGTTTTTGATGACCGCT 58.888 39.130 0.00 0.00 0.00 5.52
1485 1540 2.579201 CACGTCCTGCTCCGGAAT 59.421 61.111 5.23 0.00 34.20 3.01
1656 2998 4.526262 AGAGAGTAAGTGTGCACTGAGAAT 59.474 41.667 19.41 0.00 41.58 2.40
1657 2999 4.564041 AGAGTAAGTGTGCACTGAGAATG 58.436 43.478 19.41 0.00 41.58 2.67
1659 3001 4.564041 AGTAAGTGTGCACTGAGAATGAG 58.436 43.478 19.41 0.00 41.58 2.90
1660 3002 3.758755 AAGTGTGCACTGAGAATGAGA 57.241 42.857 19.41 0.00 41.58 3.27
1662 3004 4.283363 AGTGTGCACTGAGAATGAGAAT 57.717 40.909 19.41 0.00 40.75 2.40
1663 3005 4.001652 AGTGTGCACTGAGAATGAGAATG 58.998 43.478 19.41 0.00 40.75 2.67
1664 3006 3.999001 GTGTGCACTGAGAATGAGAATGA 59.001 43.478 19.41 0.00 0.00 2.57
1665 3007 4.093115 GTGTGCACTGAGAATGAGAATGAG 59.907 45.833 19.41 0.00 0.00 2.90
1666 3008 4.020839 TGTGCACTGAGAATGAGAATGAGA 60.021 41.667 19.41 0.00 0.00 3.27
1667 3009 5.117584 GTGCACTGAGAATGAGAATGAGAT 58.882 41.667 10.32 0.00 0.00 2.75
1668 3010 6.127253 TGTGCACTGAGAATGAGAATGAGATA 60.127 38.462 19.41 0.00 0.00 1.98
1669 3011 6.200665 GTGCACTGAGAATGAGAATGAGATAC 59.799 42.308 10.32 0.00 0.00 2.24
1670 3012 6.127253 TGCACTGAGAATGAGAATGAGATACA 60.127 38.462 0.00 0.00 0.00 2.29
1671 3013 6.200665 GCACTGAGAATGAGAATGAGATACAC 59.799 42.308 0.00 0.00 0.00 2.90
1672 3014 7.490840 CACTGAGAATGAGAATGAGATACACT 58.509 38.462 0.00 0.00 0.00 3.55
1673 3015 7.648908 CACTGAGAATGAGAATGAGATACACTC 59.351 40.741 0.00 0.00 45.11 3.51
1674 3016 7.560991 ACTGAGAATGAGAATGAGATACACTCT 59.439 37.037 0.00 0.00 45.13 3.24
1675 3017 8.986929 TGAGAATGAGAATGAGATACACTCTA 57.013 34.615 0.00 0.00 45.13 2.43
1676 3018 8.845227 TGAGAATGAGAATGAGATACACTCTAC 58.155 37.037 0.00 0.00 45.13 2.59
1677 3019 8.995027 AGAATGAGAATGAGATACACTCTACT 57.005 34.615 0.00 0.00 45.13 2.57
1678 3020 9.066892 AGAATGAGAATGAGATACACTCTACTC 57.933 37.037 0.00 0.00 45.13 2.59
1679 3021 6.852858 TGAGAATGAGATACACTCTACTCG 57.147 41.667 0.00 0.00 45.13 4.18
1680 3022 6.583562 TGAGAATGAGATACACTCTACTCGA 58.416 40.000 0.00 0.00 45.13 4.04
1681 3023 7.220740 TGAGAATGAGATACACTCTACTCGAT 58.779 38.462 0.00 0.00 45.13 3.59
1682 3024 7.172361 TGAGAATGAGATACACTCTACTCGATG 59.828 40.741 0.00 0.00 45.13 3.84
1683 3025 6.995686 AGAATGAGATACACTCTACTCGATGT 59.004 38.462 0.00 0.00 45.13 3.06
1686 3028 7.052142 TGAGATACACTCTACTCGATGTCTA 57.948 40.000 0.00 0.00 45.13 2.59
1689 3031 7.728148 AGATACACTCTACTCGATGTCTAGAA 58.272 38.462 0.00 0.00 30.26 2.10
1828 3192 3.604582 CTGATGGAGAAGACAAAGGGAC 58.395 50.000 0.00 0.00 0.00 4.46
1839 3203 3.505790 AAAGGGACGCCACATGCCA 62.506 57.895 0.00 0.00 36.24 4.92
1917 3290 1.002900 GAGAGGCTCGTCAAGATCTCG 60.003 57.143 9.22 0.00 35.55 4.04
1964 3337 1.838073 AAGTACGTCCCCAGGCCAAG 61.838 60.000 5.01 0.00 0.00 3.61
1991 3364 1.411977 CACTGCCTGATCGAGGAATCT 59.588 52.381 13.48 0.00 46.33 2.40
2116 3563 6.016276 TGTTTAAGGGAAAGAAAGATGTGCTC 60.016 38.462 0.00 0.00 0.00 4.26
2117 3564 2.704572 AGGGAAAGAAAGATGTGCTCG 58.295 47.619 0.00 0.00 0.00 5.03
2118 3565 2.303022 AGGGAAAGAAAGATGTGCTCGA 59.697 45.455 0.00 0.00 0.00 4.04
2119 3566 2.675348 GGGAAAGAAAGATGTGCTCGAG 59.325 50.000 8.45 8.45 0.00 4.04
2120 3567 3.589988 GGAAAGAAAGATGTGCTCGAGA 58.410 45.455 18.75 0.00 0.00 4.04
2121 3568 4.187694 GGAAAGAAAGATGTGCTCGAGAT 58.812 43.478 18.75 0.00 0.00 2.75
2126 3573 2.886862 AGATGTGCTCGAGATTGGAG 57.113 50.000 18.75 0.00 34.62 3.86
2136 3583 4.437930 GCTCGAGATTGGAGGAAAATGTTG 60.438 45.833 18.75 0.00 32.10 3.33
2144 3596 3.303881 GAGGAAAATGTTGGTTGCTCC 57.696 47.619 0.00 0.00 36.51 4.70
2146 3598 2.893489 AGGAAAATGTTGGTTGCTCCTC 59.107 45.455 0.80 0.00 37.07 3.71
2157 3614 3.244422 TGGTTGCTCCTCATTTCGTACTT 60.244 43.478 0.00 0.00 37.07 2.24
2159 3616 4.567159 GGTTGCTCCTCATTTCGTACTTAG 59.433 45.833 0.00 0.00 0.00 2.18
2180 3637 8.960591 ACTTAGGAAACCATTTGATCACATTAG 58.039 33.333 0.00 0.00 0.00 1.73
2200 3688 3.019003 GCCTAGCTCCCTTGCGTCA 62.019 63.158 0.00 0.00 38.13 4.35
2201 3689 1.142748 CCTAGCTCCCTTGCGTCAG 59.857 63.158 0.00 0.00 38.13 3.51
2202 3690 1.520342 CTAGCTCCCTTGCGTCAGC 60.520 63.158 0.00 0.00 45.41 4.26
2244 3732 0.030235 GCGTCACCAAAACCTTGACC 59.970 55.000 0.00 0.00 37.01 4.02
2254 3742 2.885644 CCTTGACCGGCGATCACG 60.886 66.667 1.82 0.71 42.93 4.35
2273 3761 0.032815 GTCATCGCCTAGCTCCTTCC 59.967 60.000 0.00 0.00 0.00 3.46
2274 3762 1.006805 CATCGCCTAGCTCCTTCCG 60.007 63.158 0.00 0.00 0.00 4.30
2275 3763 1.455959 ATCGCCTAGCTCCTTCCGT 60.456 57.895 0.00 0.00 0.00 4.69
2276 3764 1.457009 ATCGCCTAGCTCCTTCCGTC 61.457 60.000 0.00 0.00 0.00 4.79
2277 3765 2.415608 CGCCTAGCTCCTTCCGTCA 61.416 63.158 0.00 0.00 0.00 4.35
2278 3766 1.142097 GCCTAGCTCCTTCCGTCAC 59.858 63.158 0.00 0.00 0.00 3.67
2280 3768 0.970937 CCTAGCTCCTTCCGTCACCA 60.971 60.000 0.00 0.00 0.00 4.17
2284 3772 0.591659 GCTCCTTCCGTCACCAAAAC 59.408 55.000 0.00 0.00 0.00 2.43
2286 3774 0.841289 TCCTTCCGTCACCAAAACCT 59.159 50.000 0.00 0.00 0.00 3.50
2314 3804 2.372690 CGGTCTCGCGTCACCAAAG 61.373 63.158 23.06 6.26 32.33 2.77
2423 3915 1.621317 TGTTGCAACGTAGATCCCTCA 59.379 47.619 23.79 0.00 0.00 3.86
2424 3916 2.037902 TGTTGCAACGTAGATCCCTCAA 59.962 45.455 23.79 0.00 0.00 3.02
2425 3917 3.270877 GTTGCAACGTAGATCCCTCAAT 58.729 45.455 14.90 0.00 0.00 2.57
2426 3918 2.905075 TGCAACGTAGATCCCTCAATG 58.095 47.619 0.00 0.00 0.00 2.82
2427 3919 1.599542 GCAACGTAGATCCCTCAATGC 59.400 52.381 0.00 0.00 0.00 3.56
2428 3920 2.213499 CAACGTAGATCCCTCAATGCC 58.787 52.381 0.00 0.00 0.00 4.40
2429 3921 0.759346 ACGTAGATCCCTCAATGCCC 59.241 55.000 0.00 0.00 0.00 5.36
2430 3922 0.035458 CGTAGATCCCTCAATGCCCC 59.965 60.000 0.00 0.00 0.00 5.80
2431 3923 0.402121 GTAGATCCCTCAATGCCCCC 59.598 60.000 0.00 0.00 0.00 5.40
2432 3924 0.029163 TAGATCCCTCAATGCCCCCA 60.029 55.000 0.00 0.00 0.00 4.96
2435 4033 3.671410 CCCTCAATGCCCCCACCA 61.671 66.667 0.00 0.00 0.00 4.17
2438 4036 3.188903 TCAATGCCCCCACCACCA 61.189 61.111 0.00 0.00 0.00 4.17
2452 4050 1.898574 CACCACACTGCCCTGTTCC 60.899 63.158 0.00 0.00 0.00 3.62
2499 5337 0.776080 ACCTTCCCCAACCATGGTCT 60.776 55.000 20.07 5.76 46.01 3.85
2610 5453 1.379916 CACCTCATTGGGAGCCACA 59.620 57.895 0.00 0.00 42.62 4.17
2730 5573 6.325919 AGTTTCTTTCGCAAATCATTGGTA 57.674 33.333 0.00 0.00 37.02 3.25
2751 5594 5.967088 GGTACACGAAAGTTGTAGGTTTTTG 59.033 40.000 0.00 0.00 46.40 2.44
2758 5601 6.237097 CGAAAGTTGTAGGTTTTTGTTTCACG 60.237 38.462 0.00 0.00 0.00 4.35
2760 5603 5.633927 AGTTGTAGGTTTTTGTTTCACGTC 58.366 37.500 0.00 0.00 0.00 4.34
2770 5613 7.163032 GGTTTTTGTTTCACGTCGCATATATAC 59.837 37.037 0.00 0.00 0.00 1.47
2772 5615 4.934515 TGTTTCACGTCGCATATATACCA 58.065 39.130 0.00 0.00 0.00 3.25
2783 5626 5.012664 TCGCATATATACCAACACCCTTGAT 59.987 40.000 0.00 0.00 0.00 2.57
2784 5627 5.705441 CGCATATATACCAACACCCTTGATT 59.295 40.000 0.00 0.00 0.00 2.57
2785 5628 6.206634 CGCATATATACCAACACCCTTGATTT 59.793 38.462 0.00 0.00 0.00 2.17
2911 5757 2.645802 AGGCCGTTTAGTTGTTTGTGA 58.354 42.857 0.00 0.00 0.00 3.58
2914 5760 4.098807 AGGCCGTTTAGTTGTTTGTGATTT 59.901 37.500 0.00 0.00 0.00 2.17
2926 5772 9.561069 AGTTGTTTGTGATTTAGACAATCTACT 57.439 29.630 0.00 0.00 35.82 2.57
2929 5775 8.999431 TGTTTGTGATTTAGACAATCTACTTCC 58.001 33.333 0.00 0.00 33.41 3.46
2930 5776 9.220767 GTTTGTGATTTAGACAATCTACTTCCT 57.779 33.333 0.00 0.00 33.41 3.36
2931 5777 9.436957 TTTGTGATTTAGACAATCTACTTCCTC 57.563 33.333 0.00 0.00 33.41 3.71
2932 5778 7.556844 TGTGATTTAGACAATCTACTTCCTCC 58.443 38.462 0.00 0.00 0.00 4.30
2933 5779 6.697892 GTGATTTAGACAATCTACTTCCTCCG 59.302 42.308 0.00 0.00 0.00 4.63
2934 5780 6.380274 TGATTTAGACAATCTACTTCCTCCGT 59.620 38.462 0.00 0.00 0.00 4.69
2935 5781 6.600882 TTTAGACAATCTACTTCCTCCGTT 57.399 37.500 0.00 0.00 0.00 4.44
2936 5782 4.722361 AGACAATCTACTTCCTCCGTTC 57.278 45.455 0.00 0.00 0.00 3.95
2937 5783 3.447944 AGACAATCTACTTCCTCCGTTCC 59.552 47.826 0.00 0.00 0.00 3.62
2938 5784 3.442076 ACAATCTACTTCCTCCGTTCCT 58.558 45.455 0.00 0.00 0.00 3.36
2939 5785 4.607239 ACAATCTACTTCCTCCGTTCCTA 58.393 43.478 0.00 0.00 0.00 2.94
2940 5786 5.021458 ACAATCTACTTCCTCCGTTCCTAA 58.979 41.667 0.00 0.00 0.00 2.69
2941 5787 5.482878 ACAATCTACTTCCTCCGTTCCTAAA 59.517 40.000 0.00 0.00 0.00 1.85
2942 5788 6.156429 ACAATCTACTTCCTCCGTTCCTAAAT 59.844 38.462 0.00 0.00 0.00 1.40
2943 5789 7.343833 ACAATCTACTTCCTCCGTTCCTAAATA 59.656 37.037 0.00 0.00 0.00 1.40
2944 5790 8.368668 CAATCTACTTCCTCCGTTCCTAAATAT 58.631 37.037 0.00 0.00 0.00 1.28
2945 5791 9.597681 AATCTACTTCCTCCGTTCCTAAATATA 57.402 33.333 0.00 0.00 0.00 0.86
2946 5792 9.597681 ATCTACTTCCTCCGTTCCTAAATATAA 57.402 33.333 0.00 0.00 0.00 0.98
2947 5793 9.075678 TCTACTTCCTCCGTTCCTAAATATAAG 57.924 37.037 0.00 0.00 0.00 1.73
2948 5794 7.672122 ACTTCCTCCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
2949 5795 7.724287 ACTTCCTCCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
2950 5796 7.564292 ACTTCCTCCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
2951 5797 7.909485 TCCTCCGTTCCTAAATATAAGTCTT 57.091 36.000 0.00 0.00 0.00 3.01
2952 5798 8.315220 TCCTCCGTTCCTAAATATAAGTCTTT 57.685 34.615 0.00 0.00 0.00 2.52
2953 5799 8.202137 TCCTCCGTTCCTAAATATAAGTCTTTG 58.798 37.037 0.00 0.00 0.00 2.77
2954 5800 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
2969 5815 6.783708 AGTCTTTGTAGAGATTCCACTAGG 57.216 41.667 0.00 0.00 0.00 3.02
2970 5816 6.257586 AGTCTTTGTAGAGATTCCACTAGGT 58.742 40.000 0.00 0.00 35.89 3.08
2971 5817 6.153680 AGTCTTTGTAGAGATTCCACTAGGTG 59.846 42.308 0.00 0.00 35.89 4.00
2986 5832 4.395542 CACTAGGTGGACTATATACGGAGC 59.604 50.000 0.00 0.00 0.00 4.70
2987 5833 3.520691 AGGTGGACTATATACGGAGCA 57.479 47.619 0.00 0.00 0.00 4.26
2988 5834 3.840991 AGGTGGACTATATACGGAGCAA 58.159 45.455 0.00 0.00 0.00 3.91
2989 5835 4.220724 AGGTGGACTATATACGGAGCAAA 58.779 43.478 0.00 0.00 0.00 3.68
2990 5836 4.652421 AGGTGGACTATATACGGAGCAAAA 59.348 41.667 0.00 0.00 0.00 2.44
2991 5837 5.307196 AGGTGGACTATATACGGAGCAAAAT 59.693 40.000 0.00 0.00 0.00 1.82
2992 5838 5.408604 GGTGGACTATATACGGAGCAAAATG 59.591 44.000 0.00 0.00 0.00 2.32
2993 5839 6.220930 GTGGACTATATACGGAGCAAAATGA 58.779 40.000 0.00 0.00 0.00 2.57
2994 5840 6.704493 GTGGACTATATACGGAGCAAAATGAA 59.296 38.462 0.00 0.00 0.00 2.57
2995 5841 7.387948 GTGGACTATATACGGAGCAAAATGAAT 59.612 37.037 0.00 0.00 0.00 2.57
2996 5842 7.387673 TGGACTATATACGGAGCAAAATGAATG 59.612 37.037 0.00 0.00 0.00 2.67
2997 5843 7.602644 GGACTATATACGGAGCAAAATGAATGA 59.397 37.037 0.00 0.00 0.00 2.57
2998 5844 8.902540 ACTATATACGGAGCAAAATGAATGAA 57.097 30.769 0.00 0.00 0.00 2.57
2999 5845 9.507329 ACTATATACGGAGCAAAATGAATGAAT 57.493 29.630 0.00 0.00 0.00 2.57
3000 5846 9.979270 CTATATACGGAGCAAAATGAATGAATC 57.021 33.333 0.00 0.00 0.00 2.52
3001 5847 6.949352 ATACGGAGCAAAATGAATGAATCT 57.051 33.333 0.00 0.00 0.00 2.40
3002 5848 9.725019 ATATACGGAGCAAAATGAATGAATCTA 57.275 29.630 0.00 0.00 0.00 1.98
3003 5849 6.124088 ACGGAGCAAAATGAATGAATCTAC 57.876 37.500 0.00 0.00 0.00 2.59
3004 5850 5.647658 ACGGAGCAAAATGAATGAATCTACA 59.352 36.000 0.00 0.00 0.00 2.74
3005 5851 5.967674 CGGAGCAAAATGAATGAATCTACAC 59.032 40.000 0.00 0.00 0.00 2.90
3006 5852 6.183360 CGGAGCAAAATGAATGAATCTACACT 60.183 38.462 0.00 0.00 0.00 3.55
3007 5853 7.542025 GGAGCAAAATGAATGAATCTACACTT 58.458 34.615 0.00 0.00 0.00 3.16
3008 5854 8.677300 GGAGCAAAATGAATGAATCTACACTTA 58.323 33.333 0.00 0.00 0.00 2.24
3034 5880 9.890629 AAAATACATCTATATACATCCGCATGT 57.109 29.630 0.00 0.00 45.73 3.21
3037 5883 7.646548 ACATCTATATACATCCGCATGTAGT 57.353 36.000 5.28 0.00 46.52 2.73
3038 5884 8.067751 ACATCTATATACATCCGCATGTAGTT 57.932 34.615 5.28 0.00 46.52 2.24
3039 5885 8.191446 ACATCTATATACATCCGCATGTAGTTC 58.809 37.037 5.28 0.00 46.52 3.01
3040 5886 7.696992 TCTATATACATCCGCATGTAGTTCA 57.303 36.000 5.28 0.00 46.52 3.18
3041 5887 8.293699 TCTATATACATCCGCATGTAGTTCAT 57.706 34.615 5.28 0.00 46.52 2.57
3042 5888 9.403583 TCTATATACATCCGCATGTAGTTCATA 57.596 33.333 5.28 0.00 46.52 2.15
3043 5889 9.670719 CTATATACATCCGCATGTAGTTCATAG 57.329 37.037 5.28 5.81 46.52 2.23
3044 5890 4.672587 ACATCCGCATGTAGTTCATAGT 57.327 40.909 0.00 0.00 41.81 2.12
3045 5891 4.371786 ACATCCGCATGTAGTTCATAGTG 58.628 43.478 0.00 0.00 41.81 2.74
3046 5892 4.099419 ACATCCGCATGTAGTTCATAGTGA 59.901 41.667 0.00 0.00 41.81 3.41
3047 5893 4.729227 TCCGCATGTAGTTCATAGTGAA 57.271 40.909 0.00 0.00 34.67 3.18
3048 5894 5.079689 TCCGCATGTAGTTCATAGTGAAA 57.920 39.130 0.00 0.00 38.22 2.69
3049 5895 4.868171 TCCGCATGTAGTTCATAGTGAAAC 59.132 41.667 0.00 0.00 38.22 2.78
3050 5896 4.034048 CCGCATGTAGTTCATAGTGAAACC 59.966 45.833 0.00 0.00 38.22 3.27
3051 5897 4.870426 CGCATGTAGTTCATAGTGAAACCT 59.130 41.667 0.00 0.00 38.22 3.50
3052 5898 5.005779 CGCATGTAGTTCATAGTGAAACCTC 59.994 44.000 0.00 0.00 38.22 3.85
3053 5899 6.109359 GCATGTAGTTCATAGTGAAACCTCT 58.891 40.000 0.00 0.00 38.22 3.69
3054 5900 7.265673 GCATGTAGTTCATAGTGAAACCTCTA 58.734 38.462 0.00 0.00 38.22 2.43
3055 5901 7.222999 GCATGTAGTTCATAGTGAAACCTCTAC 59.777 40.741 0.00 9.47 38.22 2.59
3056 5902 7.770366 TGTAGTTCATAGTGAAACCTCTACA 57.230 36.000 12.80 12.80 38.63 2.74
3057 5903 8.185506 TGTAGTTCATAGTGAAACCTCTACAA 57.814 34.615 13.75 4.10 38.32 2.41
3058 5904 8.644216 TGTAGTTCATAGTGAAACCTCTACAAA 58.356 33.333 13.75 0.00 38.32 2.83
3059 5905 9.141400 GTAGTTCATAGTGAAACCTCTACAAAG 57.859 37.037 10.69 0.00 38.22 2.77
3060 5906 7.963532 AGTTCATAGTGAAACCTCTACAAAGA 58.036 34.615 0.00 0.00 38.22 2.52
3061 5907 7.873505 AGTTCATAGTGAAACCTCTACAAAGAC 59.126 37.037 0.00 0.00 38.22 3.01
3062 5908 7.540474 TCATAGTGAAACCTCTACAAAGACT 57.460 36.000 0.00 0.00 37.80 3.24
3063 5909 7.963532 TCATAGTGAAACCTCTACAAAGACTT 58.036 34.615 0.00 0.00 37.80 3.01
3064 5910 9.085645 TCATAGTGAAACCTCTACAAAGACTTA 57.914 33.333 0.00 0.00 37.80 2.24
3065 5911 9.877178 CATAGTGAAACCTCTACAAAGACTTAT 57.123 33.333 0.00 0.00 37.80 1.73
3079 5925 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
3080 5926 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
3081 5927 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3082 5928 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3083 5929 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3084 5930 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
3085 5931 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
3086 5932 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
3087 5933 8.731591 TTATATTTAGGAACGGAGGGAGTATT 57.268 34.615 0.00 0.00 0.00 1.89
3088 5934 9.827198 TTATATTTAGGAACGGAGGGAGTATTA 57.173 33.333 0.00 0.00 0.00 0.98
3089 5935 8.912614 ATATTTAGGAACGGAGGGAGTATTAT 57.087 34.615 0.00 0.00 0.00 1.28
3091 5937 8.912614 ATTTAGGAACGGAGGGAGTATTATAT 57.087 34.615 0.00 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 9.008965 ACATCAAGCACATTTTTATAGTACACA 57.991 29.630 0.00 0.00 0.00 3.72
53 54 9.935682 CTTCGTATACATCAAGCACATTTTTAT 57.064 29.630 3.32 0.00 0.00 1.40
54 55 9.157104 TCTTCGTATACATCAAGCACATTTTTA 57.843 29.630 3.32 0.00 0.00 1.52
55 56 8.039603 TCTTCGTATACATCAAGCACATTTTT 57.960 30.769 3.32 0.00 0.00 1.94
56 57 7.609760 TCTTCGTATACATCAAGCACATTTT 57.390 32.000 3.32 0.00 0.00 1.82
57 58 7.609760 TTCTTCGTATACATCAAGCACATTT 57.390 32.000 3.32 0.00 0.00 2.32
58 59 7.792374 ATTCTTCGTATACATCAAGCACATT 57.208 32.000 3.32 0.00 0.00 2.71
59 60 7.280876 ACAATTCTTCGTATACATCAAGCACAT 59.719 33.333 3.32 0.00 0.00 3.21
60 61 6.593770 ACAATTCTTCGTATACATCAAGCACA 59.406 34.615 3.32 0.00 0.00 4.57
61 62 7.005062 ACAATTCTTCGTATACATCAAGCAC 57.995 36.000 3.32 0.00 0.00 4.40
62 63 8.887036 ATACAATTCTTCGTATACATCAAGCA 57.113 30.769 3.32 0.00 0.00 3.91
72 73 8.770828 CGGTTTCCATTATACAATTCTTCGTAT 58.229 33.333 0.00 0.00 33.08 3.06
73 74 7.980662 TCGGTTTCCATTATACAATTCTTCGTA 59.019 33.333 0.00 0.00 0.00 3.43
74 75 6.819649 TCGGTTTCCATTATACAATTCTTCGT 59.180 34.615 0.00 0.00 0.00 3.85
75 76 7.241663 TCGGTTTCCATTATACAATTCTTCG 57.758 36.000 0.00 0.00 0.00 3.79
76 77 9.503427 CTTTCGGTTTCCATTATACAATTCTTC 57.497 33.333 0.00 0.00 0.00 2.87
77 78 9.238368 TCTTTCGGTTTCCATTATACAATTCTT 57.762 29.630 0.00 0.00 0.00 2.52
78 79 8.801882 TCTTTCGGTTTCCATTATACAATTCT 57.198 30.769 0.00 0.00 0.00 2.40
79 80 9.849166 TTTCTTTCGGTTTCCATTATACAATTC 57.151 29.630 0.00 0.00 0.00 2.17
80 81 9.634163 GTTTCTTTCGGTTTCCATTATACAATT 57.366 29.630 0.00 0.00 0.00 2.32
81 82 8.798402 TGTTTCTTTCGGTTTCCATTATACAAT 58.202 29.630 0.00 0.00 0.00 2.71
82 83 8.167605 TGTTTCTTTCGGTTTCCATTATACAA 57.832 30.769 0.00 0.00 0.00 2.41
83 84 7.747155 TGTTTCTTTCGGTTTCCATTATACA 57.253 32.000 0.00 0.00 0.00 2.29
84 85 9.124807 CTTTGTTTCTTTCGGTTTCCATTATAC 57.875 33.333 0.00 0.00 0.00 1.47
85 86 9.069082 TCTTTGTTTCTTTCGGTTTCCATTATA 57.931 29.630 0.00 0.00 0.00 0.98
86 87 7.947282 TCTTTGTTTCTTTCGGTTTCCATTAT 58.053 30.769 0.00 0.00 0.00 1.28
87 88 7.336161 TCTTTGTTTCTTTCGGTTTCCATTA 57.664 32.000 0.00 0.00 0.00 1.90
88 89 6.215495 TCTTTGTTTCTTTCGGTTTCCATT 57.785 33.333 0.00 0.00 0.00 3.16
89 90 5.845391 TCTTTGTTTCTTTCGGTTTCCAT 57.155 34.783 0.00 0.00 0.00 3.41
90 91 5.646577 TTCTTTGTTTCTTTCGGTTTCCA 57.353 34.783 0.00 0.00 0.00 3.53
91 92 6.954616 TTTTCTTTGTTTCTTTCGGTTTCC 57.045 33.333 0.00 0.00 0.00 3.13
129 130 9.946418 CGTTTTTATTGTCTTTCGTTTCTTTTT 57.054 25.926 0.00 0.00 0.00 1.94
130 131 9.344309 TCGTTTTTATTGTCTTTCGTTTCTTTT 57.656 25.926 0.00 0.00 0.00 2.27
131 132 8.898983 TCGTTTTTATTGTCTTTCGTTTCTTT 57.101 26.923 0.00 0.00 0.00 2.52
132 133 8.898983 TTCGTTTTTATTGTCTTTCGTTTCTT 57.101 26.923 0.00 0.00 0.00 2.52
133 134 8.898983 TTTCGTTTTTATTGTCTTTCGTTTCT 57.101 26.923 0.00 0.00 0.00 2.52
134 135 9.940518 TTTTTCGTTTTTATTGTCTTTCGTTTC 57.059 25.926 0.00 0.00 0.00 2.78
135 136 9.946418 CTTTTTCGTTTTTATTGTCTTTCGTTT 57.054 25.926 0.00 0.00 0.00 3.60
136 137 9.344309 TCTTTTTCGTTTTTATTGTCTTTCGTT 57.656 25.926 0.00 0.00 0.00 3.85
137 138 8.898983 TCTTTTTCGTTTTTATTGTCTTTCGT 57.101 26.923 0.00 0.00 0.00 3.85
142 143 9.425577 TGGTTTTCTTTTTCGTTTTTATTGTCT 57.574 25.926 0.00 0.00 0.00 3.41
153 154 9.647797 ACTTATTTCTTTGGTTTTCTTTTTCGT 57.352 25.926 0.00 0.00 0.00 3.85
475 476 9.840427 CCGTTTTTCTTCAACACATATCTAATT 57.160 29.630 0.00 0.00 0.00 1.40
476 477 9.226606 TCCGTTTTTCTTCAACACATATCTAAT 57.773 29.630 0.00 0.00 0.00 1.73
477 478 8.610248 TCCGTTTTTCTTCAACACATATCTAA 57.390 30.769 0.00 0.00 0.00 2.10
478 479 8.610248 TTCCGTTTTTCTTCAACACATATCTA 57.390 30.769 0.00 0.00 0.00 1.98
479 480 7.504924 TTCCGTTTTTCTTCAACACATATCT 57.495 32.000 0.00 0.00 0.00 1.98
480 481 8.568732 TTTTCCGTTTTTCTTCAACACATATC 57.431 30.769 0.00 0.00 0.00 1.63
499 500 2.162608 TGTCGGTTGCCATTATTTTCCG 59.837 45.455 0.00 0.00 38.16 4.30
500 501 3.859411 TGTCGGTTGCCATTATTTTCC 57.141 42.857 0.00 0.00 0.00 3.13
501 502 5.465935 TCTTTGTCGGTTGCCATTATTTTC 58.534 37.500 0.00 0.00 0.00 2.29
507 508 2.428890 TGTTTCTTTGTCGGTTGCCATT 59.571 40.909 0.00 0.00 0.00 3.16
509 510 1.464734 TGTTTCTTTGTCGGTTGCCA 58.535 45.000 0.00 0.00 0.00 4.92
534 535 7.225734 GCCTTTCTTATTGGTTTGCTTTGTTTA 59.774 33.333 0.00 0.00 0.00 2.01
543 544 7.784633 TTTCTTTGCCTTTCTTATTGGTTTG 57.215 32.000 0.00 0.00 0.00 2.93
556 557 3.288092 AGACTTCGGTTTTCTTTGCCTT 58.712 40.909 0.00 0.00 0.00 4.35
558 559 4.035909 TGTTAGACTTCGGTTTTCTTTGCC 59.964 41.667 0.00 0.00 0.00 4.52
559 560 5.164606 TGTTAGACTTCGGTTTTCTTTGC 57.835 39.130 0.00 0.00 0.00 3.68
560 561 6.199393 CCTTGTTAGACTTCGGTTTTCTTTG 58.801 40.000 0.00 0.00 0.00 2.77
564 565 4.383173 TCCCTTGTTAGACTTCGGTTTTC 58.617 43.478 0.00 0.00 0.00 2.29
566 567 4.426736 TTCCCTTGTTAGACTTCGGTTT 57.573 40.909 0.00 0.00 0.00 3.27
576 577 6.761242 CCTGGTTTTTCTTTTTCCCTTGTTAG 59.239 38.462 0.00 0.00 0.00 2.34
577 578 6.440965 TCCTGGTTTTTCTTTTTCCCTTGTTA 59.559 34.615 0.00 0.00 0.00 2.41
580 581 5.351948 TCCTGGTTTTTCTTTTTCCCTTG 57.648 39.130 0.00 0.00 0.00 3.61
581 582 6.214615 TCTTTCCTGGTTTTTCTTTTTCCCTT 59.785 34.615 0.00 0.00 0.00 3.95
585 587 8.317891 TGTTTCTTTCCTGGTTTTTCTTTTTC 57.682 30.769 0.00 0.00 0.00 2.29
590 592 9.952030 TTATTTTGTTTCTTTCCTGGTTTTTCT 57.048 25.926 0.00 0.00 0.00 2.52
621 623 5.705400 TCTTGTTCCCTCCATTTTCTTCTT 58.295 37.500 0.00 0.00 0.00 2.52
623 625 6.405278 TTTCTTGTTCCCTCCATTTTCTTC 57.595 37.500 0.00 0.00 0.00 2.87
626 628 5.245977 TGGATTTCTTGTTCCCTCCATTTTC 59.754 40.000 0.00 0.00 0.00 2.29
627 629 5.154418 TGGATTTCTTGTTCCCTCCATTTT 58.846 37.500 0.00 0.00 0.00 1.82
628 630 4.750941 TGGATTTCTTGTTCCCTCCATTT 58.249 39.130 0.00 0.00 0.00 2.32
629 631 4.402616 TGGATTTCTTGTTCCCTCCATT 57.597 40.909 0.00 0.00 0.00 3.16
631 633 3.893753 TTGGATTTCTTGTTCCCTCCA 57.106 42.857 0.00 0.00 0.00 3.86
632 634 4.407365 TCTTTGGATTTCTTGTTCCCTCC 58.593 43.478 0.00 0.00 0.00 4.30
633 635 6.405278 TTTCTTTGGATTTCTTGTTCCCTC 57.595 37.500 0.00 0.00 0.00 4.30
634 636 6.408092 GGTTTTCTTTGGATTTCTTGTTCCCT 60.408 38.462 0.00 0.00 0.00 4.20
635 637 5.758296 GGTTTTCTTTGGATTTCTTGTTCCC 59.242 40.000 0.00 0.00 0.00 3.97
636 638 5.758296 GGGTTTTCTTTGGATTTCTTGTTCC 59.242 40.000 0.00 0.00 0.00 3.62
637 639 5.462068 CGGGTTTTCTTTGGATTTCTTGTTC 59.538 40.000 0.00 0.00 0.00 3.18
649 651 2.301577 TTTGCACCGGGTTTTCTTTG 57.698 45.000 6.32 0.00 0.00 2.77
650 652 3.055747 TCTTTTTGCACCGGGTTTTCTTT 60.056 39.130 6.32 0.00 0.00 2.52
658 660 3.172229 TCTTTTTCTTTTTGCACCGGG 57.828 42.857 6.32 0.00 0.00 5.73
671 673 9.165014 GGTGTTTGTTTTCTTTGTTTCTTTTTC 57.835 29.630 0.00 0.00 0.00 2.29
672 674 8.132362 GGGTGTTTGTTTTCTTTGTTTCTTTTT 58.868 29.630 0.00 0.00 0.00 1.94
690 693 3.067461 TCATGGTTTTCTTCGGGTGTTTG 59.933 43.478 0.00 0.00 0.00 2.93
694 697 4.037446 TCTTTTCATGGTTTTCTTCGGGTG 59.963 41.667 0.00 0.00 0.00 4.61
710 713 8.519526 ACTCACTATTTGTTGTGTTTCTTTTCA 58.480 29.630 0.00 0.00 35.82 2.69
730 738 8.370266 TGGTACTGGTTAATGTTATACTCACT 57.630 34.615 0.00 0.00 0.00 3.41
779 787 9.273016 CCTAAAAAGTATACATGTGTATCCTGG 57.727 37.037 9.11 0.93 41.18 4.45
814 824 4.714308 ACATCCCCTTTTGTTTTCAGTTCA 59.286 37.500 0.00 0.00 0.00 3.18
831 841 5.239087 TGTTCGTTAGTTGGTTTTACATCCC 59.761 40.000 0.00 0.00 0.00 3.85
855 865 6.658391 AGCTATCTTTGAATCAGTTGCTCTTT 59.342 34.615 0.00 0.00 0.00 2.52
907 918 3.222603 GGCCGATGGAAGGTTTAATGAT 58.777 45.455 0.00 0.00 0.00 2.45
969 997 0.474184 GATGGGTCGATGGGGAATGT 59.526 55.000 0.00 0.00 0.00 2.71
1078 1132 4.829518 CTCGCGCACCGTCATCGA 62.830 66.667 8.75 0.00 39.71 3.59
1191 1246 4.704833 CCCTGGTCCAGCCACACG 62.705 72.222 13.99 0.00 43.61 4.49
1259 1314 2.561885 CCTCTTCTGCGACGACGT 59.438 61.111 9.33 0.00 41.98 4.34
1379 1434 1.089920 CTGGTGGATGGCGAAGAAAG 58.910 55.000 0.00 0.00 0.00 2.62
1380 1435 0.322456 CCTGGTGGATGGCGAAGAAA 60.322 55.000 0.00 0.00 34.57 2.52
1390 1445 2.052690 CGACGAGGTCCTGGTGGAT 61.053 63.158 11.82 0.00 45.29 3.41
1449 1504 1.406898 TGCAAGCGGTCATCAAAAACA 59.593 42.857 0.00 0.00 0.00 2.83
1485 1540 1.228124 CACCAGCCCAGTTTCGGAA 60.228 57.895 0.00 0.00 0.00 4.30
1491 1546 3.831637 TTGCCCACCAGCCCAGTT 61.832 61.111 0.00 0.00 0.00 3.16
1533 1591 2.602676 GGCCACAAGCTGGGAGGTA 61.603 63.158 0.00 0.00 41.02 3.08
1563 1621 0.322366 TGATGAACATGGAGCGGCAA 60.322 50.000 1.45 0.00 0.00 4.52
1656 2998 6.583562 TCGAGTAGAGTGTATCTCATTCTCA 58.416 40.000 0.00 0.00 44.98 3.27
1657 2999 7.172532 ACATCGAGTAGAGTGTATCTCATTCTC 59.827 40.741 0.00 0.00 44.98 2.87
1659 3001 7.172532 AGACATCGAGTAGAGTGTATCTCATTC 59.827 40.741 0.00 0.00 44.98 2.67
1660 3002 6.995686 AGACATCGAGTAGAGTGTATCTCATT 59.004 38.462 0.00 0.00 44.98 2.57
1662 3004 5.919755 AGACATCGAGTAGAGTGTATCTCA 58.080 41.667 0.00 0.00 44.98 3.27
1663 3005 7.372714 TCTAGACATCGAGTAGAGTGTATCTC 58.627 42.308 0.00 0.00 43.05 2.75
1664 3006 7.292713 TCTAGACATCGAGTAGAGTGTATCT 57.707 40.000 0.00 0.00 42.47 1.98
1665 3007 7.654520 AGTTCTAGACATCGAGTAGAGTGTATC 59.345 40.741 0.00 0.00 0.00 2.24
1666 3008 7.502696 AGTTCTAGACATCGAGTAGAGTGTAT 58.497 38.462 0.00 0.00 0.00 2.29
1667 3009 6.876155 AGTTCTAGACATCGAGTAGAGTGTA 58.124 40.000 0.00 0.00 0.00 2.90
1668 3010 5.736813 AGTTCTAGACATCGAGTAGAGTGT 58.263 41.667 0.00 0.00 0.00 3.55
1669 3011 7.956420 ATAGTTCTAGACATCGAGTAGAGTG 57.044 40.000 0.00 0.00 0.00 3.51
1670 3012 8.205512 TCAATAGTTCTAGACATCGAGTAGAGT 58.794 37.037 0.00 0.00 0.00 3.24
1671 3013 8.596271 TCAATAGTTCTAGACATCGAGTAGAG 57.404 38.462 0.00 0.00 0.00 2.43
1672 3014 9.562408 AATCAATAGTTCTAGACATCGAGTAGA 57.438 33.333 0.00 0.00 0.00 2.59
1828 3192 1.062365 CGTACATTGGCATGTGGCG 59.938 57.895 11.26 11.16 43.92 5.69
1839 3203 1.048601 AGATGATCCGGCCGTACATT 58.951 50.000 26.12 5.52 0.00 2.71
1917 3290 0.600557 AGATCTGACGATGCCCGATC 59.399 55.000 0.00 0.00 41.76 3.69
2059 3449 5.920273 ACAAATCTTATTTGAAGTTGTGCGG 59.080 36.000 16.94 0.00 31.48 5.69
2116 3563 3.758554 ACCAACATTTTCCTCCAATCTCG 59.241 43.478 0.00 0.00 0.00 4.04
2117 3564 5.473039 CAACCAACATTTTCCTCCAATCTC 58.527 41.667 0.00 0.00 0.00 2.75
2118 3565 4.262592 GCAACCAACATTTTCCTCCAATCT 60.263 41.667 0.00 0.00 0.00 2.40
2119 3566 3.996363 GCAACCAACATTTTCCTCCAATC 59.004 43.478 0.00 0.00 0.00 2.67
2120 3567 3.647590 AGCAACCAACATTTTCCTCCAAT 59.352 39.130 0.00 0.00 0.00 3.16
2121 3568 3.037549 AGCAACCAACATTTTCCTCCAA 58.962 40.909 0.00 0.00 0.00 3.53
2126 3573 2.627699 TGAGGAGCAACCAACATTTTCC 59.372 45.455 2.96 0.00 42.04 3.13
2136 3583 2.973945 AGTACGAAATGAGGAGCAACC 58.026 47.619 0.00 0.00 39.35 3.77
2144 3596 7.611213 AATGGTTTCCTAAGTACGAAATGAG 57.389 36.000 0.00 0.00 31.10 2.90
2146 3598 7.812648 TCAAATGGTTTCCTAAGTACGAAATG 58.187 34.615 0.00 0.00 31.10 2.32
2157 3614 6.038161 CGCTAATGTGATCAAATGGTTTCCTA 59.962 38.462 0.00 0.00 0.00 2.94
2159 3616 5.036737 CGCTAATGTGATCAAATGGTTTCC 58.963 41.667 0.00 0.00 0.00 3.13
2220 3708 1.010462 GGTTTTGGTGACGCGACAC 60.010 57.895 29.17 29.17 39.70 3.67
2221 3709 0.745128 AAGGTTTTGGTGACGCGACA 60.745 50.000 15.93 11.23 0.00 4.35
2222 3710 0.316689 CAAGGTTTTGGTGACGCGAC 60.317 55.000 15.93 7.62 0.00 5.19
2223 3711 0.462225 TCAAGGTTTTGGTGACGCGA 60.462 50.000 15.93 0.00 34.97 5.87
2224 3712 0.316689 GTCAAGGTTTTGGTGACGCG 60.317 55.000 3.53 3.53 32.98 6.01
2225 3713 0.030235 GGTCAAGGTTTTGGTGACGC 59.970 55.000 0.00 0.00 42.11 5.19
2226 3714 0.306533 CGGTCAAGGTTTTGGTGACG 59.693 55.000 0.00 0.00 42.11 4.35
2227 3715 0.666374 CCGGTCAAGGTTTTGGTGAC 59.334 55.000 0.00 0.00 40.77 3.67
2228 3716 1.104577 GCCGGTCAAGGTTTTGGTGA 61.105 55.000 1.90 0.00 34.97 4.02
2229 3717 1.362355 GCCGGTCAAGGTTTTGGTG 59.638 57.895 1.90 0.00 34.97 4.17
2254 3742 0.032815 GGAAGGAGCTAGGCGATGAC 59.967 60.000 0.00 0.00 0.00 3.06
2300 3790 1.961277 AAGGCTTTGGTGACGCGAG 60.961 57.895 15.93 0.00 0.00 5.03
2330 3820 9.458374 CGTAGTTTACAAATCAAAACCAAGATT 57.542 29.630 0.00 0.00 36.46 2.40
2331 3821 7.593644 GCGTAGTTTACAAATCAAAACCAAGAT 59.406 33.333 0.00 0.00 36.46 2.40
2423 3915 3.516512 TGTGGTGGTGGGGGCATT 61.517 61.111 0.00 0.00 0.00 3.56
2424 3916 4.299796 GTGTGGTGGTGGGGGCAT 62.300 66.667 0.00 0.00 0.00 4.40
2426 3918 4.974721 CAGTGTGGTGGTGGGGGC 62.975 72.222 0.00 0.00 0.00 5.80
2427 3919 4.974721 GCAGTGTGGTGGTGGGGG 62.975 72.222 0.00 0.00 0.00 5.40
2428 3920 4.974721 GGCAGTGTGGTGGTGGGG 62.975 72.222 0.00 0.00 0.00 4.96
2429 3921 4.974721 GGGCAGTGTGGTGGTGGG 62.975 72.222 0.00 0.00 0.00 4.61
2430 3922 3.889692 AGGGCAGTGTGGTGGTGG 61.890 66.667 0.00 0.00 0.00 4.61
2431 3923 2.595463 CAGGGCAGTGTGGTGGTG 60.595 66.667 0.00 0.00 0.00 4.17
2432 3924 2.624674 GAACAGGGCAGTGTGGTGGT 62.625 60.000 0.00 0.00 0.00 4.16
2435 4033 2.515901 GGAACAGGGCAGTGTGGT 59.484 61.111 0.00 0.00 0.00 4.16
2438 4036 0.690762 ATAACGGAACAGGGCAGTGT 59.309 50.000 0.00 0.00 0.00 3.55
2452 4050 3.009723 AGGTGCTCATGTCCAAATAACG 58.990 45.455 0.00 0.00 0.00 3.18
2566 5408 3.799420 TGCGCCAAAAATAGACAAACAAC 59.201 39.130 4.18 0.00 0.00 3.32
2577 5419 3.512978 GGTGTCATGCGCCAAAAAT 57.487 47.368 4.18 0.00 46.73 1.82
2624 5467 2.109181 GCATGCCTCCCTCCGTAC 59.891 66.667 6.36 0.00 0.00 3.67
2717 5560 4.794169 ACTTTCGTGTACCAATGATTTGC 58.206 39.130 0.00 0.00 0.00 3.68
2730 5573 5.632244 ACAAAAACCTACAACTTTCGTGT 57.368 34.783 0.00 0.00 0.00 4.49
2751 5594 5.232626 TGTTGGTATATATGCGACGTGAAAC 59.767 40.000 0.00 0.00 0.00 2.78
2758 5601 4.267349 AGGGTGTTGGTATATATGCGAC 57.733 45.455 0.00 0.00 0.00 5.19
2760 5603 4.637276 TCAAGGGTGTTGGTATATATGCG 58.363 43.478 0.00 0.00 0.00 4.73
2818 5664 2.240160 TGTGGGGTATGTATGTGGGTTC 59.760 50.000 0.00 0.00 0.00 3.62
2821 5667 2.862541 CATGTGGGGTATGTATGTGGG 58.137 52.381 0.00 0.00 0.00 4.61
2911 5757 6.793505 ACGGAGGAAGTAGATTGTCTAAAT 57.206 37.500 0.00 0.00 29.58 1.40
2914 5760 4.643784 GGAACGGAGGAAGTAGATTGTCTA 59.356 45.833 0.00 0.00 0.00 2.59
2922 5768 8.858094 ACTTATATTTAGGAACGGAGGAAGTAG 58.142 37.037 0.00 0.00 0.00 2.57
2926 5772 7.909485 AGACTTATATTTAGGAACGGAGGAA 57.091 36.000 0.00 0.00 0.00 3.36
2927 5773 7.909485 AAGACTTATATTTAGGAACGGAGGA 57.091 36.000 0.00 0.00 0.00 3.71
2928 5774 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
2929 5775 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
2943 5789 8.919145 CCTAGTGGAATCTCTACAAAGACTTAT 58.081 37.037 0.00 0.00 34.57 1.73
2944 5790 7.894364 ACCTAGTGGAATCTCTACAAAGACTTA 59.106 37.037 0.00 0.00 37.04 2.24
2945 5791 6.726764 ACCTAGTGGAATCTCTACAAAGACTT 59.273 38.462 0.00 0.00 37.04 3.01
2946 5792 6.153680 CACCTAGTGGAATCTCTACAAAGACT 59.846 42.308 0.00 0.00 37.04 3.24
2947 5793 6.334202 CACCTAGTGGAATCTCTACAAAGAC 58.666 44.000 0.00 0.00 37.04 3.01
2948 5794 6.531503 CACCTAGTGGAATCTCTACAAAGA 57.468 41.667 0.00 0.00 37.04 2.52
2963 5809 4.395542 GCTCCGTATATAGTCCACCTAGTG 59.604 50.000 0.00 0.00 0.00 2.74
2964 5810 4.042560 TGCTCCGTATATAGTCCACCTAGT 59.957 45.833 0.00 0.00 0.00 2.57
2965 5811 4.586884 TGCTCCGTATATAGTCCACCTAG 58.413 47.826 0.00 0.00 0.00 3.02
2966 5812 4.645863 TGCTCCGTATATAGTCCACCTA 57.354 45.455 0.00 0.00 0.00 3.08
2967 5813 3.520691 TGCTCCGTATATAGTCCACCT 57.479 47.619 0.00 0.00 0.00 4.00
2968 5814 4.595762 TTTGCTCCGTATATAGTCCACC 57.404 45.455 0.00 0.00 0.00 4.61
2969 5815 6.220930 TCATTTTGCTCCGTATATAGTCCAC 58.779 40.000 0.00 0.00 0.00 4.02
2970 5816 6.413783 TCATTTTGCTCCGTATATAGTCCA 57.586 37.500 0.00 0.00 0.00 4.02
2971 5817 7.602644 TCATTCATTTTGCTCCGTATATAGTCC 59.397 37.037 0.00 0.00 0.00 3.85
2972 5818 8.534333 TCATTCATTTTGCTCCGTATATAGTC 57.466 34.615 0.00 0.00 0.00 2.59
2973 5819 8.902540 TTCATTCATTTTGCTCCGTATATAGT 57.097 30.769 0.00 0.00 0.00 2.12
2974 5820 9.979270 GATTCATTCATTTTGCTCCGTATATAG 57.021 33.333 0.00 0.00 0.00 1.31
2975 5821 9.725019 AGATTCATTCATTTTGCTCCGTATATA 57.275 29.630 0.00 0.00 0.00 0.86
2976 5822 8.627208 AGATTCATTCATTTTGCTCCGTATAT 57.373 30.769 0.00 0.00 0.00 0.86
2977 5823 8.988934 GTAGATTCATTCATTTTGCTCCGTATA 58.011 33.333 0.00 0.00 0.00 1.47
2978 5824 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
2979 5825 6.821160 TGTAGATTCATTCATTTTGCTCCGTA 59.179 34.615 0.00 0.00 0.00 4.02
2980 5826 5.647658 TGTAGATTCATTCATTTTGCTCCGT 59.352 36.000 0.00 0.00 0.00 4.69
2981 5827 5.967674 GTGTAGATTCATTCATTTTGCTCCG 59.032 40.000 0.00 0.00 0.00 4.63
2982 5828 7.093322 AGTGTAGATTCATTCATTTTGCTCC 57.907 36.000 0.00 0.00 0.00 4.70
3008 5854 9.890629 ACATGCGGATGTATATAGATGTATTTT 57.109 29.630 21.92 0.00 41.27 1.82
3011 5857 9.355916 ACTACATGCGGATGTATATAGATGTAT 57.644 33.333 27.01 1.92 42.87 2.29
3012 5858 8.747538 ACTACATGCGGATGTATATAGATGTA 57.252 34.615 27.01 6.00 42.87 2.29
3013 5859 7.646548 ACTACATGCGGATGTATATAGATGT 57.353 36.000 27.01 17.41 42.87 3.06
3014 5860 8.190784 TGAACTACATGCGGATGTATATAGATG 58.809 37.037 27.01 16.83 42.87 2.90
3015 5861 8.293699 TGAACTACATGCGGATGTATATAGAT 57.706 34.615 27.01 13.94 42.87 1.98
3016 5862 7.696992 TGAACTACATGCGGATGTATATAGA 57.303 36.000 27.01 8.81 42.87 1.98
3017 5863 9.670719 CTATGAACTACATGCGGATGTATATAG 57.329 37.037 27.01 23.56 42.87 1.31
3018 5864 9.185680 ACTATGAACTACATGCGGATGTATATA 57.814 33.333 27.01 19.97 42.87 0.86
3019 5865 7.976175 CACTATGAACTACATGCGGATGTATAT 59.024 37.037 27.01 19.20 42.87 0.86
3020 5866 7.175990 TCACTATGAACTACATGCGGATGTATA 59.824 37.037 27.01 17.01 42.87 1.47
3021 5867 6.015434 TCACTATGAACTACATGCGGATGTAT 60.015 38.462 27.01 15.48 42.87 2.29
3022 5868 5.300792 TCACTATGAACTACATGCGGATGTA 59.699 40.000 25.54 25.54 41.27 2.29
3023 5869 4.099419 TCACTATGAACTACATGCGGATGT 59.901 41.667 26.09 26.09 45.24 3.06
3024 5870 4.620982 TCACTATGAACTACATGCGGATG 58.379 43.478 16.07 16.07 39.77 3.51
3025 5871 4.937201 TCACTATGAACTACATGCGGAT 57.063 40.909 0.00 0.00 39.77 4.18
3026 5872 4.729227 TTCACTATGAACTACATGCGGA 57.271 40.909 0.00 0.00 39.77 5.54
3027 5873 4.034048 GGTTTCACTATGAACTACATGCGG 59.966 45.833 0.00 0.00 35.89 5.69
3028 5874 4.870426 AGGTTTCACTATGAACTACATGCG 59.130 41.667 0.00 0.00 35.89 4.73
3029 5875 6.109359 AGAGGTTTCACTATGAACTACATGC 58.891 40.000 0.00 0.00 35.89 4.06
3030 5876 8.251026 TGTAGAGGTTTCACTATGAACTACATG 58.749 37.037 12.28 0.00 37.34 3.21
3031 5877 8.362464 TGTAGAGGTTTCACTATGAACTACAT 57.638 34.615 12.28 0.00 37.34 2.29
3032 5878 7.770366 TGTAGAGGTTTCACTATGAACTACA 57.230 36.000 12.28 12.28 38.63 2.74
3033 5879 9.141400 CTTTGTAGAGGTTTCACTATGAACTAC 57.859 37.037 0.00 0.00 35.89 2.73
3034 5880 9.085645 TCTTTGTAGAGGTTTCACTATGAACTA 57.914 33.333 0.00 0.00 35.89 2.24
3035 5881 7.873505 GTCTTTGTAGAGGTTTCACTATGAACT 59.126 37.037 0.00 0.00 35.89 3.01
3036 5882 7.873505 AGTCTTTGTAGAGGTTTCACTATGAAC 59.126 37.037 0.00 0.00 35.89 3.18
3037 5883 7.963532 AGTCTTTGTAGAGGTTTCACTATGAA 58.036 34.615 0.00 0.00 34.03 2.57
3038 5884 7.540474 AGTCTTTGTAGAGGTTTCACTATGA 57.460 36.000 0.00 0.00 0.00 2.15
3039 5885 9.877178 ATAAGTCTTTGTAGAGGTTTCACTATG 57.123 33.333 0.00 0.00 0.00 2.23
3054 5900 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
3055 5901 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
3056 5902 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3057 5903 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3058 5904 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3059 5905 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3060 5906 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3061 5907 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3062 5908 8.731591 AATACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
3064 5910 8.912614 ATAATACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
3066 5912 8.912614 ATATAATACTCCCTCCGTTCCTAAAT 57.087 34.615 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.