Multiple sequence alignment - TraesCS3D01G486600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G486600 chr3D 100.000 2516 0 0 1 2516 582536544 582534029 0.000000e+00 4647.0
1 TraesCS3D01G486600 chr3D 85.580 1172 109 29 404 1539 582611823 582610676 0.000000e+00 1173.0
2 TraesCS3D01G486600 chr3D 87.176 694 78 8 854 1539 582250594 582249904 0.000000e+00 778.0
3 TraesCS3D01G486600 chr3D 93.506 77 5 0 303 379 108284192 108284116 5.690000e-22 115.0
4 TraesCS3D01G486600 chr3D 92.308 78 6 0 302 379 500253229 500253152 7.360000e-21 111.0
5 TraesCS3D01G486600 chr3D 90.909 77 7 0 303 379 355145065 355144989 1.230000e-18 104.0
6 TraesCS3D01G486600 chr3D 94.545 55 3 0 208 262 305580838 305580784 4.460000e-13 86.1
7 TraesCS3D01G486600 chr3D 97.368 38 1 0 260 297 582271333 582271296 5.810000e-07 65.8
8 TraesCS3D01G486600 chr4D 96.115 978 26 7 1549 2516 108913326 108912351 0.000000e+00 1585.0
9 TraesCS3D01G486600 chr4D 90.743 983 64 21 1547 2515 16423547 16422578 0.000000e+00 1286.0
10 TraesCS3D01G486600 chr7D 90.336 983 65 18 1551 2515 435419049 435418079 0.000000e+00 1262.0
11 TraesCS3D01G486600 chr5D 89.990 989 60 25 1537 2506 524929487 524930455 0.000000e+00 1242.0
12 TraesCS3D01G486600 chr5D 89.744 78 8 0 302 379 458812560 458812637 1.590000e-17 100.0
13 TraesCS3D01G486600 chr5D 89.744 78 8 0 302 379 565967905 565967982 1.590000e-17 100.0
14 TraesCS3D01G486600 chr1D 89.402 953 61 24 1584 2515 143368899 143367966 0.000000e+00 1164.0
15 TraesCS3D01G486600 chr3B 91.294 804 65 3 737 1539 778678838 778679637 0.000000e+00 1092.0
16 TraesCS3D01G486600 chr3B 91.074 717 51 6 816 1524 778793055 778793766 0.000000e+00 957.0
17 TraesCS3D01G486600 chr3B 89.744 585 54 5 960 1539 779135326 779135909 0.000000e+00 743.0
18 TraesCS3D01G486600 chr3B 86.076 632 76 9 901 1520 779139080 779139711 0.000000e+00 669.0
19 TraesCS3D01G486600 chr3B 87.069 232 28 1 1293 1524 779116445 779116674 6.900000e-66 261.0
20 TraesCS3D01G486600 chr3B 80.376 372 33 15 404 751 778678466 778678821 1.930000e-61 246.0
21 TraesCS3D01G486600 chr3B 87.923 207 25 0 1 207 778677873 778678079 6.950000e-61 244.0
22 TraesCS3D01G486600 chr3B 79.941 339 28 10 404 718 778678114 778678436 1.960000e-51 213.0
23 TraesCS3D01G486600 chr3B 79.268 328 49 16 404 718 778791956 778792277 7.050000e-51 211.0
24 TraesCS3D01G486600 chr3B 100.000 34 0 0 756 789 778793015 778793048 2.090000e-06 63.9
25 TraesCS3D01G486600 chr5B 90.606 841 47 19 1691 2510 540350084 540350913 0.000000e+00 1086.0
26 TraesCS3D01G486600 chr5B 93.464 153 10 0 1548 1700 540345276 540345428 7.000000e-56 228.0
27 TraesCS3D01G486600 chr4A 89.427 785 56 14 1553 2311 83767973 83767190 0.000000e+00 965.0
28 TraesCS3D01G486600 chr2A 88.987 790 61 15 1548 2313 38511028 38511815 0.000000e+00 953.0
29 TraesCS3D01G486600 chr7A 88.579 788 64 14 1548 2313 78448622 78447839 0.000000e+00 933.0
30 TraesCS3D01G486600 chr7A 92.308 169 10 3 2348 2516 78447841 78447676 1.160000e-58 237.0
31 TraesCS3D01G486600 chr7A 91.139 79 6 1 296 374 281376342 281376419 3.420000e-19 106.0
32 TraesCS3D01G486600 chr4B 90.698 645 39 13 1884 2510 605900016 605900657 0.000000e+00 839.0
33 TraesCS3D01G486600 chr4B 92.593 216 16 0 1545 1760 605885768 605885983 6.760000e-81 311.0
34 TraesCS3D01G486600 chrUn 91.807 476 39 0 1064 1539 382449215 382449690 0.000000e+00 664.0
35 TraesCS3D01G486600 chrUn 87.600 250 18 6 816 1057 41431478 41431722 6.850000e-71 278.0
36 TraesCS3D01G486600 chrUn 87.600 250 18 6 816 1057 330746927 330747171 6.850000e-71 278.0
37 TraesCS3D01G486600 chrUn 87.600 250 18 6 816 1057 330758399 330758643 6.850000e-71 278.0
38 TraesCS3D01G486600 chrUn 74.057 424 90 15 1087 1500 295600132 295599719 3.350000e-34 156.0
39 TraesCS3D01G486600 chrUn 77.778 288 26 8 404 666 321841626 321841900 2.610000e-30 143.0
40 TraesCS3D01G486600 chrUn 77.509 289 26 8 404 666 41422276 41422551 1.210000e-28 137.0
41 TraesCS3D01G486600 chrUn 92.982 57 4 0 662 718 41422190 41422246 1.600000e-12 84.2
42 TraesCS3D01G486600 chrUn 92.982 57 4 0 662 718 321841540 321841596 1.600000e-12 84.2
43 TraesCS3D01G486600 chrUn 88.060 67 4 3 723 789 41431409 41431471 2.680000e-10 76.8
44 TraesCS3D01G486600 chrUn 88.060 67 4 3 723 789 330746858 330746920 2.680000e-10 76.8
45 TraesCS3D01G486600 chrUn 88.060 67 4 3 723 789 330758330 330758392 2.680000e-10 76.8
46 TraesCS3D01G486600 chr3A 87.037 108 12 2 1547 1654 730877781 730877886 1.220000e-23 121.0
47 TraesCS3D01G486600 chr3A 89.286 84 8 1 297 379 720239723 720239806 1.230000e-18 104.0
48 TraesCS3D01G486600 chr3A 94.545 55 3 0 208 262 423620469 423620415 4.460000e-13 86.1
49 TraesCS3D01G486600 chr3A 95.556 45 2 0 1553 1597 129490840 129490796 3.470000e-09 73.1
50 TraesCS3D01G486600 chr1A 87.037 108 12 2 1548 1654 70915593 70915699 1.220000e-23 121.0
51 TraesCS3D01G486600 chr6D 94.805 77 3 1 303 379 75377840 75377915 4.400000e-23 119.0
52 TraesCS3D01G486600 chr6A 92.208 77 6 0 303 379 614533485 614533409 2.650000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G486600 chr3D 582534029 582536544 2515 True 4647.000000 4647 100.0000 1 2516 1 chr3D.!!$R7 2515
1 TraesCS3D01G486600 chr3D 582610676 582611823 1147 True 1173.000000 1173 85.5800 404 1539 1 chr3D.!!$R8 1135
2 TraesCS3D01G486600 chr3D 582249904 582250594 690 True 778.000000 778 87.1760 854 1539 1 chr3D.!!$R5 685
3 TraesCS3D01G486600 chr4D 108912351 108913326 975 True 1585.000000 1585 96.1150 1549 2516 1 chr4D.!!$R2 967
4 TraesCS3D01G486600 chr4D 16422578 16423547 969 True 1286.000000 1286 90.7430 1547 2515 1 chr4D.!!$R1 968
5 TraesCS3D01G486600 chr7D 435418079 435419049 970 True 1262.000000 1262 90.3360 1551 2515 1 chr7D.!!$R1 964
6 TraesCS3D01G486600 chr5D 524929487 524930455 968 False 1242.000000 1242 89.9900 1537 2506 1 chr5D.!!$F2 969
7 TraesCS3D01G486600 chr1D 143367966 143368899 933 True 1164.000000 1164 89.4020 1584 2515 1 chr1D.!!$R1 931
8 TraesCS3D01G486600 chr3B 779135326 779139711 4385 False 706.000000 743 87.9100 901 1539 2 chr3B.!!$F4 638
9 TraesCS3D01G486600 chr3B 778677873 778679637 1764 False 448.750000 1092 84.8835 1 1539 4 chr3B.!!$F2 1538
10 TraesCS3D01G486600 chr3B 778791956 778793766 1810 False 410.633333 957 90.1140 404 1524 3 chr3B.!!$F3 1120
11 TraesCS3D01G486600 chr5B 540350084 540350913 829 False 1086.000000 1086 90.6060 1691 2510 1 chr5B.!!$F2 819
12 TraesCS3D01G486600 chr4A 83767190 83767973 783 True 965.000000 965 89.4270 1553 2311 1 chr4A.!!$R1 758
13 TraesCS3D01G486600 chr2A 38511028 38511815 787 False 953.000000 953 88.9870 1548 2313 1 chr2A.!!$F1 765
14 TraesCS3D01G486600 chr7A 78447676 78448622 946 True 585.000000 933 90.4435 1548 2516 2 chr7A.!!$R1 968
15 TraesCS3D01G486600 chr4B 605900016 605900657 641 False 839.000000 839 90.6980 1884 2510 1 chr4B.!!$F2 626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
203 204 0.033504 CACCAGCAAGTCGTAGGTGT 59.966 55.0 0.0 0.0 43.57 4.16 F
752 1466 0.034863 ACCACCATTTATTCGCCCGT 60.035 50.0 0.0 0.0 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1225 1957 0.108207 CCCATGAGCCTGGATGAGTC 59.892 60.000 0.0 0.0 38.69 3.36 R
1862 2889 3.239449 TGTCTTGCCTTTCTCCACTCTA 58.761 45.455 0.0 0.0 0.00 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.849168 TCACATATATTTGACCAGGCAATTTAG 58.151 33.333 0.00 0.00 0.00 1.85
39 40 5.397899 CCAGGCAATTTAGGGAAGATGTAGA 60.398 44.000 0.00 0.00 0.00 2.59
40 41 6.122277 CAGGCAATTTAGGGAAGATGTAGAA 58.878 40.000 0.00 0.00 0.00 2.10
77 78 9.256477 CATGCATGCATAAATGAGAGTTAAAAT 57.744 29.630 31.73 2.14 34.91 1.82
83 84 8.970020 TGCATAAATGAGAGTTAAAATGGACAT 58.030 29.630 0.00 0.00 0.00 3.06
84 85 9.241317 GCATAAATGAGAGTTAAAATGGACATG 57.759 33.333 0.00 0.00 0.00 3.21
87 88 4.922206 TGAGAGTTAAAATGGACATGCCT 58.078 39.130 7.54 0.00 37.63 4.75
93 94 1.843368 AAATGGACATGCCTGGTCAG 58.157 50.000 7.54 0.00 37.00 3.51
95 96 1.583556 ATGGACATGCCTGGTCAGTA 58.416 50.000 7.54 0.00 37.00 2.74
98 99 4.265808 TGGACATGCCTGGTCAGTAACC 62.266 54.545 7.54 0.00 40.93 2.85
189 190 3.775316 AGTAGGGTTCTCATTACCACCAG 59.225 47.826 0.00 0.00 37.40 4.00
202 203 2.827604 CACCAGCAAGTCGTAGGTG 58.172 57.895 0.00 0.00 43.14 4.00
203 204 0.033504 CACCAGCAAGTCGTAGGTGT 59.966 55.000 0.00 0.00 43.57 4.16
204 205 0.756903 ACCAGCAAGTCGTAGGTGTT 59.243 50.000 0.00 0.00 0.00 3.32
205 206 1.965643 ACCAGCAAGTCGTAGGTGTTA 59.034 47.619 0.00 0.00 0.00 2.41
206 207 2.029290 ACCAGCAAGTCGTAGGTGTTAG 60.029 50.000 0.00 0.00 0.00 2.34
207 208 2.607187 CAGCAAGTCGTAGGTGTTAGG 58.393 52.381 0.00 0.00 0.00 2.69
208 209 2.230508 CAGCAAGTCGTAGGTGTTAGGA 59.769 50.000 0.00 0.00 0.00 2.94
209 210 2.492484 AGCAAGTCGTAGGTGTTAGGAG 59.508 50.000 0.00 0.00 0.00 3.69
210 211 2.230750 GCAAGTCGTAGGTGTTAGGAGT 59.769 50.000 0.00 0.00 32.57 3.85
211 212 3.441572 GCAAGTCGTAGGTGTTAGGAGTA 59.558 47.826 0.00 0.00 31.35 2.59
212 213 4.673841 GCAAGTCGTAGGTGTTAGGAGTAC 60.674 50.000 0.00 0.00 31.35 2.73
213 214 4.292186 AGTCGTAGGTGTTAGGAGTACA 57.708 45.455 0.00 0.00 30.14 2.90
214 215 4.655963 AGTCGTAGGTGTTAGGAGTACAA 58.344 43.478 0.00 0.00 30.14 2.41
215 216 5.072741 AGTCGTAGGTGTTAGGAGTACAAA 58.927 41.667 0.00 0.00 30.14 2.83
216 217 5.182760 AGTCGTAGGTGTTAGGAGTACAAAG 59.817 44.000 0.00 0.00 30.14 2.77
217 218 5.182001 GTCGTAGGTGTTAGGAGTACAAAGA 59.818 44.000 0.00 0.00 0.00 2.52
218 219 5.413833 TCGTAGGTGTTAGGAGTACAAAGAG 59.586 44.000 0.00 0.00 0.00 2.85
219 220 5.182760 CGTAGGTGTTAGGAGTACAAAGAGT 59.817 44.000 0.00 0.00 0.00 3.24
220 221 5.725325 AGGTGTTAGGAGTACAAAGAGTC 57.275 43.478 0.00 0.00 0.00 3.36
221 222 5.145564 AGGTGTTAGGAGTACAAAGAGTCA 58.854 41.667 0.00 0.00 0.00 3.41
222 223 5.601313 AGGTGTTAGGAGTACAAAGAGTCAA 59.399 40.000 0.00 0.00 0.00 3.18
223 224 6.099269 AGGTGTTAGGAGTACAAAGAGTCAAA 59.901 38.462 0.00 0.00 0.00 2.69
224 225 6.202379 GGTGTTAGGAGTACAAAGAGTCAAAC 59.798 42.308 0.00 0.00 0.00 2.93
225 226 6.759827 GTGTTAGGAGTACAAAGAGTCAAACA 59.240 38.462 0.00 0.00 30.13 2.83
226 227 7.441458 GTGTTAGGAGTACAAAGAGTCAAACAT 59.559 37.037 0.00 0.00 32.93 2.71
227 228 8.644216 TGTTAGGAGTACAAAGAGTCAAACATA 58.356 33.333 0.00 0.00 28.79 2.29
228 229 9.654663 GTTAGGAGTACAAAGAGTCAAACATAT 57.345 33.333 0.00 0.00 0.00 1.78
229 230 9.871238 TTAGGAGTACAAAGAGTCAAACATATC 57.129 33.333 0.00 0.00 0.00 1.63
230 231 7.907389 AGGAGTACAAAGAGTCAAACATATCA 58.093 34.615 0.00 0.00 0.00 2.15
231 232 8.543774 AGGAGTACAAAGAGTCAAACATATCAT 58.456 33.333 0.00 0.00 0.00 2.45
232 233 8.607459 GGAGTACAAAGAGTCAAACATATCATG 58.393 37.037 0.00 0.00 0.00 3.07
233 234 7.978982 AGTACAAAGAGTCAAACATATCATGC 58.021 34.615 0.00 0.00 0.00 4.06
234 235 7.826252 AGTACAAAGAGTCAAACATATCATGCT 59.174 33.333 0.00 0.00 0.00 3.79
235 236 6.849502 ACAAAGAGTCAAACATATCATGCTG 58.150 36.000 0.00 0.00 0.00 4.41
236 237 5.496133 AAGAGTCAAACATATCATGCTGC 57.504 39.130 0.00 0.00 0.00 5.25
237 238 4.778579 AGAGTCAAACATATCATGCTGCT 58.221 39.130 0.00 0.00 0.00 4.24
238 239 4.575236 AGAGTCAAACATATCATGCTGCTG 59.425 41.667 0.00 0.00 0.00 4.41
239 240 4.267536 AGTCAAACATATCATGCTGCTGT 58.732 39.130 0.00 0.00 0.00 4.40
240 241 5.430886 AGTCAAACATATCATGCTGCTGTA 58.569 37.500 0.00 0.00 0.00 2.74
241 242 5.295292 AGTCAAACATATCATGCTGCTGTAC 59.705 40.000 0.00 0.00 0.00 2.90
242 243 5.065090 GTCAAACATATCATGCTGCTGTACA 59.935 40.000 0.00 0.00 0.00 2.90
243 244 5.647225 TCAAACATATCATGCTGCTGTACAA 59.353 36.000 0.00 0.00 0.00 2.41
244 245 5.490139 AACATATCATGCTGCTGTACAAC 57.510 39.130 0.00 0.00 0.00 3.32
245 246 3.879295 ACATATCATGCTGCTGTACAACC 59.121 43.478 0.00 0.00 0.00 3.77
246 247 2.495155 ATCATGCTGCTGTACAACCA 57.505 45.000 0.00 0.00 0.00 3.67
247 248 2.268762 TCATGCTGCTGTACAACCAA 57.731 45.000 0.00 0.00 0.00 3.67
248 249 2.794103 TCATGCTGCTGTACAACCAAT 58.206 42.857 0.00 0.00 0.00 3.16
249 250 2.749076 TCATGCTGCTGTACAACCAATC 59.251 45.455 0.00 0.00 0.00 2.67
250 251 1.155889 TGCTGCTGTACAACCAATCG 58.844 50.000 0.00 0.00 0.00 3.34
251 252 0.447801 GCTGCTGTACAACCAATCGG 59.552 55.000 0.00 0.00 38.77 4.18
252 253 0.447801 CTGCTGTACAACCAATCGGC 59.552 55.000 0.00 0.00 34.57 5.54
253 254 0.250510 TGCTGTACAACCAATCGGCA 60.251 50.000 0.00 0.00 39.41 5.69
254 255 0.878416 GCTGTACAACCAATCGGCAA 59.122 50.000 0.00 0.00 34.57 4.52
267 268 0.878416 TCGGCAAATTAGTGGTGCAC 59.122 50.000 8.80 8.80 40.12 4.57
270 271 0.732538 GCAAATTAGTGGTGCACGCC 60.733 55.000 11.45 3.30 39.64 5.68
287 288 1.539388 CGCCATTTTCACCTTGTGCTA 59.461 47.619 0.00 0.00 32.98 3.49
326 327 4.201122 GGATCCAGCCCAGCCCAG 62.201 72.222 6.95 0.00 0.00 4.45
327 328 4.891037 GATCCAGCCCAGCCCAGC 62.891 72.222 0.00 0.00 0.00 4.85
348 349 3.093835 CCGGGCCCCCTTCATGTA 61.094 66.667 18.66 0.00 0.00 2.29
349 350 2.192175 CGGGCCCCCTTCATGTAC 59.808 66.667 18.66 0.00 0.00 2.90
350 351 2.601299 GGGCCCCCTTCATGTACC 59.399 66.667 12.23 0.00 0.00 3.34
351 352 2.192175 GGCCCCCTTCATGTACCG 59.808 66.667 0.00 0.00 0.00 4.02
352 353 2.676265 GGCCCCCTTCATGTACCGT 61.676 63.158 0.00 0.00 0.00 4.83
353 354 1.339644 GGCCCCCTTCATGTACCGTA 61.340 60.000 0.00 0.00 0.00 4.02
354 355 0.106149 GCCCCCTTCATGTACCGTAG 59.894 60.000 0.00 0.00 0.00 3.51
355 356 0.106149 CCCCCTTCATGTACCGTAGC 59.894 60.000 0.00 0.00 0.00 3.58
356 357 0.828022 CCCCTTCATGTACCGTAGCA 59.172 55.000 0.00 0.00 0.00 3.49
357 358 1.208535 CCCCTTCATGTACCGTAGCAA 59.791 52.381 0.00 0.00 0.00 3.91
358 359 2.158813 CCCCTTCATGTACCGTAGCAAT 60.159 50.000 0.00 0.00 0.00 3.56
359 360 3.541632 CCCTTCATGTACCGTAGCAATT 58.458 45.455 0.00 0.00 0.00 2.32
360 361 3.312421 CCCTTCATGTACCGTAGCAATTG 59.688 47.826 0.00 0.00 0.00 2.32
361 362 3.242739 CCTTCATGTACCGTAGCAATTGC 60.243 47.826 23.05 23.05 42.49 3.56
376 377 4.798574 GCAATTGCTACAGTACTTTTGCT 58.201 39.130 23.21 0.00 36.27 3.91
377 378 5.938322 GCAATTGCTACAGTACTTTTGCTA 58.062 37.500 23.21 9.02 36.27 3.49
378 379 5.795441 GCAATTGCTACAGTACTTTTGCTAC 59.205 40.000 23.21 0.00 36.27 3.58
379 380 6.314784 CAATTGCTACAGTACTTTTGCTACC 58.685 40.000 14.89 0.00 0.00 3.18
380 381 3.934068 TGCTACAGTACTTTTGCTACCC 58.066 45.455 14.89 0.00 0.00 3.69
381 382 3.268330 GCTACAGTACTTTTGCTACCCC 58.732 50.000 8.01 0.00 0.00 4.95
382 383 3.055312 GCTACAGTACTTTTGCTACCCCT 60.055 47.826 8.01 0.00 0.00 4.79
383 384 3.418684 ACAGTACTTTTGCTACCCCTG 57.581 47.619 0.00 0.00 0.00 4.45
384 385 2.039879 ACAGTACTTTTGCTACCCCTGG 59.960 50.000 0.00 0.00 0.00 4.45
385 386 1.633945 AGTACTTTTGCTACCCCTGGG 59.366 52.381 5.50 5.50 42.03 4.45
395 396 2.530406 CCCCTGGGGCCTAGATCC 60.530 72.222 21.20 0.00 35.35 3.36
396 397 2.925170 CCCTGGGGCCTAGATCCG 60.925 72.222 19.80 0.78 0.00 4.18
397 398 3.631046 CCTGGGGCCTAGATCCGC 61.631 72.222 19.80 9.95 37.10 5.54
398 399 3.631046 CTGGGGCCTAGATCCGCC 61.631 72.222 12.23 7.40 44.92 6.13
402 403 2.423446 GGCCTAGATCCGCCACTG 59.577 66.667 10.43 0.00 45.01 3.66
463 468 2.947127 AGAACAGAGGAGCAAAAGCT 57.053 45.000 0.00 0.00 0.00 3.74
499 518 5.404968 GTGTCACTCTTCAATCTCTGTCTTG 59.595 44.000 0.00 0.00 0.00 3.02
512 531 2.104622 TCTGTCTTGCATCACCTCACAA 59.895 45.455 0.00 0.00 0.00 3.33
519 538 1.748591 GCATCACCTCACAATCCTCCC 60.749 57.143 0.00 0.00 0.00 4.30
521 540 0.119155 TCACCTCACAATCCTCCCCT 59.881 55.000 0.00 0.00 0.00 4.79
536 881 2.243221 CTCCCCTTTTCCATCACCTCAT 59.757 50.000 0.00 0.00 0.00 2.90
599 966 5.048846 ACAAGTACCAACTTTCCTCACAT 57.951 39.130 0.00 0.00 43.60 3.21
617 984 6.126568 TCACATGTACGATATCGACTTCAA 57.873 37.500 30.75 10.47 43.02 2.69
622 989 5.528870 TGTACGATATCGACTTCAATGCAT 58.471 37.500 30.75 6.89 43.02 3.96
626 993 4.143242 CGATATCGACTTCAATGCATCACC 60.143 45.833 20.50 0.00 43.02 4.02
627 994 2.470983 TCGACTTCAATGCATCACCA 57.529 45.000 0.00 0.00 0.00 4.17
641 1008 1.237533 TCACCACTACAAGCGTACGA 58.762 50.000 21.65 0.00 0.00 3.43
700 1145 7.672983 TCTAAAGTGCTACAGGAAATGAAAG 57.327 36.000 0.00 0.00 0.00 2.62
711 1156 0.673437 AAATGAAAGCACCACACCGG 59.327 50.000 0.00 0.00 42.50 5.28
729 1174 2.945668 CCGGCTGCTAGCTAGAAAAATT 59.054 45.455 25.15 0.00 41.99 1.82
744 1189 6.036577 AGAAAAATTCGCACCACCATTTAT 57.963 33.333 0.00 0.00 34.02 1.40
752 1466 0.034863 ACCACCATTTATTCGCCCGT 60.035 50.000 0.00 0.00 0.00 5.28
799 1513 1.755380 AGATGAGCCGTTGTACCTACC 59.245 52.381 0.00 0.00 0.00 3.18
812 1532 1.760192 ACCTACCGCGAAGTCACTAT 58.240 50.000 8.23 0.00 0.00 2.12
817 1537 3.314541 ACCGCGAAGTCACTATTTCTT 57.685 42.857 8.23 0.00 0.00 2.52
818 1538 3.251571 ACCGCGAAGTCACTATTTCTTC 58.748 45.455 8.23 0.00 35.60 2.87
844 1564 2.780643 CAACGAGCCGAGCACATG 59.219 61.111 1.50 0.00 0.00 3.21
845 1565 3.121030 AACGAGCCGAGCACATGC 61.121 61.111 0.00 0.00 42.49 4.06
846 1566 3.881952 AACGAGCCGAGCACATGCA 62.882 57.895 6.64 0.00 45.16 3.96
847 1567 2.893895 CGAGCCGAGCACATGCAT 60.894 61.111 6.64 0.00 45.16 3.96
848 1568 2.713770 GAGCCGAGCACATGCATG 59.286 61.111 25.09 25.09 45.16 4.06
863 1583 3.740631 TGCATGTATCTCTCGCTGAAT 57.259 42.857 0.00 0.00 0.00 2.57
872 1592 3.930336 TCTCTCGCTGAATTGTCAATGT 58.070 40.909 0.00 0.00 31.88 2.71
900 1620 4.316861 CGTAATGTACGCATACCGACTTTG 60.317 45.833 0.00 0.00 45.81 2.77
969 1697 1.972795 AGCCCACAAAAGCATCACAAT 59.027 42.857 0.00 0.00 0.00 2.71
1115 1847 4.337060 CGACGTGGTGAGCGGACA 62.337 66.667 0.00 0.00 0.00 4.02
1116 1848 2.028484 GACGTGGTGAGCGGACAA 59.972 61.111 0.00 0.00 0.00 3.18
1168 1900 0.179056 CACGACCAACACCTCCAAGT 60.179 55.000 0.00 0.00 0.00 3.16
1170 1902 0.944311 CGACCAACACCTCCAAGTCG 60.944 60.000 0.00 0.00 40.76 4.18
1209 1941 2.224281 GGTCATGGACAACTCACTCACA 60.224 50.000 0.00 0.00 33.68 3.58
1317 2049 4.318332 TCATGCTCATGAACTTCGTCTTT 58.682 39.130 9.88 0.00 44.14 2.52
1326 2058 1.213537 CTTCGTCTTTACCGCCGGA 59.786 57.895 11.71 0.00 0.00 5.14
1354 2086 2.278596 GCAGCAGCATCGCCATTG 60.279 61.111 0.00 0.00 41.58 2.82
1374 2106 3.944233 GGTCGCAACGCCGTGTTT 61.944 61.111 0.00 0.00 39.29 2.83
1404 2136 1.977009 TGAGATGGCTGTCGTCGGT 60.977 57.895 0.00 0.00 36.53 4.69
1428 2160 4.947147 GGCGTGTTCAGGTGGGCA 62.947 66.667 0.00 0.00 0.00 5.36
1461 2193 0.689745 AGGCCAGGACGCATACCTTA 60.690 55.000 5.01 0.00 35.35 2.69
1533 2265 0.179067 AGTCTCGGCCGTTGTCAAAA 60.179 50.000 27.15 1.04 0.00 2.44
1570 2571 5.250200 ACGGGTTTGCTATTTCACATCTAA 58.750 37.500 0.00 0.00 0.00 2.10
1783 2804 2.734606 CAGCCGTTGTTTGTCTCGATTA 59.265 45.455 0.00 0.00 0.00 1.75
1793 2814 4.655762 TTGTCTCGATTATGGACTCCTG 57.344 45.455 3.76 0.00 0.00 3.86
1981 3014 3.563808 TGTTCGGTCTTTTGGAACATGAG 59.436 43.478 0.00 0.00 43.52 2.90
2017 3056 8.740906 GTTCTTTTGTTTTTCCCCCAATTTTTA 58.259 29.630 0.00 0.00 0.00 1.52
2139 3187 9.848710 ATGATGTCTCATCTAAATTTGTCATCT 57.151 29.630 0.00 0.00 37.58 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 5.199982 TCCCTAAATTGCCTGGTCAAATA 57.800 39.130 7.46 4.53 0.00 1.40
15 16 3.635591 ACATCTTCCCTAAATTGCCTGG 58.364 45.455 0.00 0.00 0.00 4.45
27 28 6.127647 TGCAATCATGTTTTCTACATCTTCCC 60.128 38.462 0.00 0.00 45.71 3.97
72 73 3.245229 ACTGACCAGGCATGTCCATTTTA 60.245 43.478 0.00 0.00 37.29 1.52
77 78 1.003118 GTTACTGACCAGGCATGTCCA 59.997 52.381 0.00 0.00 37.29 4.02
189 190 2.230750 ACTCCTAACACCTACGACTTGC 59.769 50.000 0.00 0.00 0.00 4.01
202 203 7.964604 ATGTTTGACTCTTTGTACTCCTAAC 57.035 36.000 0.00 0.00 0.00 2.34
203 204 9.871238 GATATGTTTGACTCTTTGTACTCCTAA 57.129 33.333 0.00 0.00 0.00 2.69
204 205 9.031537 TGATATGTTTGACTCTTTGTACTCCTA 57.968 33.333 0.00 0.00 0.00 2.94
205 206 7.907389 TGATATGTTTGACTCTTTGTACTCCT 58.093 34.615 0.00 0.00 0.00 3.69
206 207 8.607459 CATGATATGTTTGACTCTTTGTACTCC 58.393 37.037 0.00 0.00 0.00 3.85
207 208 8.119226 GCATGATATGTTTGACTCTTTGTACTC 58.881 37.037 0.00 0.00 0.00 2.59
208 209 7.826252 AGCATGATATGTTTGACTCTTTGTACT 59.174 33.333 0.00 0.00 0.00 2.73
209 210 7.907045 CAGCATGATATGTTTGACTCTTTGTAC 59.093 37.037 0.00 0.00 39.69 2.90
210 211 7.414429 GCAGCATGATATGTTTGACTCTTTGTA 60.414 37.037 0.00 0.00 39.69 2.41
211 212 6.624423 GCAGCATGATATGTTTGACTCTTTGT 60.624 38.462 0.00 0.00 39.69 2.83
212 213 5.742453 GCAGCATGATATGTTTGACTCTTTG 59.258 40.000 0.00 0.00 39.69 2.77
213 214 5.651139 AGCAGCATGATATGTTTGACTCTTT 59.349 36.000 0.00 0.00 39.69 2.52
214 215 5.066117 CAGCAGCATGATATGTTTGACTCTT 59.934 40.000 0.00 0.00 39.69 2.85
215 216 4.575236 CAGCAGCATGATATGTTTGACTCT 59.425 41.667 0.00 0.00 39.69 3.24
216 217 4.334759 ACAGCAGCATGATATGTTTGACTC 59.665 41.667 0.00 0.00 39.69 3.36
217 218 4.267536 ACAGCAGCATGATATGTTTGACT 58.732 39.130 0.00 0.00 39.69 3.41
218 219 4.627611 ACAGCAGCATGATATGTTTGAC 57.372 40.909 0.00 0.00 39.69 3.18
219 220 5.184711 TGTACAGCAGCATGATATGTTTGA 58.815 37.500 6.34 0.00 39.69 2.69
220 221 5.488645 TGTACAGCAGCATGATATGTTTG 57.511 39.130 6.34 3.34 39.69 2.93
221 222 5.163622 GGTTGTACAGCAGCATGATATGTTT 60.164 40.000 12.05 0.00 39.69 2.83
222 223 4.336433 GGTTGTACAGCAGCATGATATGTT 59.664 41.667 12.05 0.00 39.69 2.71
223 224 3.879295 GGTTGTACAGCAGCATGATATGT 59.121 43.478 12.05 1.06 39.69 2.29
224 225 3.878699 TGGTTGTACAGCAGCATGATATG 59.121 43.478 12.05 0.00 39.69 1.78
225 226 4.155063 TGGTTGTACAGCAGCATGATAT 57.845 40.909 12.05 0.00 39.69 1.63
226 227 3.625649 TGGTTGTACAGCAGCATGATA 57.374 42.857 12.05 0.00 39.69 2.15
227 228 2.495155 TGGTTGTACAGCAGCATGAT 57.505 45.000 12.05 0.00 39.69 2.45
228 229 2.268762 TTGGTTGTACAGCAGCATGA 57.731 45.000 12.05 0.00 39.69 3.07
229 230 2.476686 CGATTGGTTGTACAGCAGCATG 60.477 50.000 12.05 0.00 40.87 4.06
230 231 1.739466 CGATTGGTTGTACAGCAGCAT 59.261 47.619 12.05 0.00 33.34 3.79
231 232 1.155889 CGATTGGTTGTACAGCAGCA 58.844 50.000 12.05 3.68 33.34 4.41
232 233 0.447801 CCGATTGGTTGTACAGCAGC 59.552 55.000 12.05 0.83 33.34 5.25
233 234 0.447801 GCCGATTGGTTGTACAGCAG 59.552 55.000 12.05 0.00 37.67 4.24
234 235 0.250510 TGCCGATTGGTTGTACAGCA 60.251 50.000 12.05 5.10 37.67 4.41
235 236 0.878416 TTGCCGATTGGTTGTACAGC 59.122 50.000 0.27 0.27 37.67 4.40
236 237 3.848272 ATTTGCCGATTGGTTGTACAG 57.152 42.857 0.00 0.00 37.67 2.74
237 238 4.762765 ACTAATTTGCCGATTGGTTGTACA 59.237 37.500 0.00 0.00 37.67 2.90
238 239 5.092781 CACTAATTTGCCGATTGGTTGTAC 58.907 41.667 0.00 0.00 37.67 2.90
239 240 4.156922 CCACTAATTTGCCGATTGGTTGTA 59.843 41.667 0.00 0.00 37.67 2.41
240 241 3.056891 CCACTAATTTGCCGATTGGTTGT 60.057 43.478 0.00 0.00 37.67 3.32
241 242 3.056891 ACCACTAATTTGCCGATTGGTTG 60.057 43.478 0.00 0.00 37.67 3.77
242 243 3.056891 CACCACTAATTTGCCGATTGGTT 60.057 43.478 0.00 0.00 37.67 3.67
243 244 2.491693 CACCACTAATTTGCCGATTGGT 59.508 45.455 0.00 0.00 37.67 3.67
244 245 2.735126 GCACCACTAATTTGCCGATTGG 60.735 50.000 0.00 0.00 38.77 3.16
245 246 2.094803 TGCACCACTAATTTGCCGATTG 60.095 45.455 0.00 0.00 35.26 2.67
246 247 2.094752 GTGCACCACTAATTTGCCGATT 60.095 45.455 5.22 0.00 35.26 3.34
247 248 1.472480 GTGCACCACTAATTTGCCGAT 59.528 47.619 5.22 0.00 35.26 4.18
248 249 0.878416 GTGCACCACTAATTTGCCGA 59.122 50.000 5.22 0.00 35.26 5.54
249 250 0.454285 CGTGCACCACTAATTTGCCG 60.454 55.000 12.15 0.00 35.26 5.69
250 251 0.732538 GCGTGCACCACTAATTTGCC 60.733 55.000 12.15 0.00 35.26 4.52
251 252 0.732538 GGCGTGCACCACTAATTTGC 60.733 55.000 12.15 5.10 36.76 3.68
252 253 0.595588 TGGCGTGCACCACTAATTTG 59.404 50.000 12.15 0.00 33.75 2.32
253 254 1.544724 ATGGCGTGCACCACTAATTT 58.455 45.000 12.15 0.00 44.17 1.82
254 255 1.544724 AATGGCGTGCACCACTAATT 58.455 45.000 12.15 5.84 44.17 1.40
267 268 0.314935 AGCACAAGGTGAAAATGGCG 59.685 50.000 0.00 0.00 35.23 5.69
270 271 5.227238 CTAGCTAGCACAAGGTGAAAATG 57.773 43.478 18.83 0.00 35.23 2.32
309 310 4.201122 CTGGGCTGGGCTGGATCC 62.201 72.222 4.20 4.20 0.00 3.36
310 311 4.891037 GCTGGGCTGGGCTGGATC 62.891 72.222 0.00 0.00 0.00 3.36
331 332 3.093835 TACATGAAGGGGGCCCGG 61.094 66.667 17.79 0.00 41.95 5.73
332 333 2.192175 GTACATGAAGGGGGCCCG 59.808 66.667 17.79 3.53 41.95 6.13
333 334 2.601299 GGTACATGAAGGGGGCCC 59.399 66.667 15.76 15.76 0.00 5.80
334 335 1.339644 TACGGTACATGAAGGGGGCC 61.340 60.000 0.00 0.00 0.00 5.80
335 336 0.106149 CTACGGTACATGAAGGGGGC 59.894 60.000 0.00 0.00 0.00 5.80
336 337 0.106149 GCTACGGTACATGAAGGGGG 59.894 60.000 0.00 0.00 0.00 5.40
337 338 0.828022 TGCTACGGTACATGAAGGGG 59.172 55.000 0.00 0.00 0.00 4.79
338 339 2.684001 TTGCTACGGTACATGAAGGG 57.316 50.000 0.00 0.00 0.00 3.95
339 340 3.242739 GCAATTGCTACGGTACATGAAGG 60.243 47.826 23.21 0.00 38.21 3.46
340 341 3.940303 GCAATTGCTACGGTACATGAAG 58.060 45.455 23.21 0.00 38.21 3.02
354 355 4.798574 AGCAAAAGTACTGTAGCAATTGC 58.201 39.130 23.05 23.05 41.52 3.56
355 356 6.314784 GGTAGCAAAAGTACTGTAGCAATTG 58.685 40.000 13.90 0.00 0.00 2.32
356 357 5.414765 GGGTAGCAAAAGTACTGTAGCAATT 59.585 40.000 13.90 0.00 0.00 2.32
357 358 4.941873 GGGTAGCAAAAGTACTGTAGCAAT 59.058 41.667 13.90 0.46 0.00 3.56
358 359 4.320870 GGGTAGCAAAAGTACTGTAGCAA 58.679 43.478 13.90 0.00 0.00 3.91
359 360 3.307199 GGGGTAGCAAAAGTACTGTAGCA 60.307 47.826 13.90 1.10 0.00 3.49
360 361 3.055312 AGGGGTAGCAAAAGTACTGTAGC 60.055 47.826 0.00 0.41 0.00 3.58
361 362 4.504858 CAGGGGTAGCAAAAGTACTGTAG 58.495 47.826 0.00 0.00 0.00 2.74
362 363 3.262405 CCAGGGGTAGCAAAAGTACTGTA 59.738 47.826 0.00 0.00 0.00 2.74
363 364 2.039879 CCAGGGGTAGCAAAAGTACTGT 59.960 50.000 0.00 0.00 0.00 3.55
364 365 2.618045 CCCAGGGGTAGCAAAAGTACTG 60.618 54.545 0.00 0.00 0.00 2.74
365 366 1.633945 CCCAGGGGTAGCAAAAGTACT 59.366 52.381 0.00 0.00 0.00 2.73
366 367 1.340697 CCCCAGGGGTAGCAAAAGTAC 60.341 57.143 18.09 0.00 38.25 2.73
367 368 0.996583 CCCCAGGGGTAGCAAAAGTA 59.003 55.000 18.09 0.00 38.25 2.24
368 369 1.774300 CCCCAGGGGTAGCAAAAGT 59.226 57.895 18.09 0.00 38.25 2.66
369 370 1.682344 GCCCCAGGGGTAGCAAAAG 60.682 63.158 27.04 0.00 46.51 2.27
370 371 2.443324 GCCCCAGGGGTAGCAAAA 59.557 61.111 27.04 0.00 46.51 2.44
371 372 2.791731 TAGGCCCCAGGGGTAGCAAA 62.792 60.000 27.04 3.22 46.51 3.68
372 373 3.276031 TAGGCCCCAGGGGTAGCAA 62.276 63.158 27.04 4.73 46.51 3.91
373 374 3.701485 TAGGCCCCAGGGGTAGCA 61.701 66.667 27.04 6.27 46.51 3.49
374 375 2.697929 ATCTAGGCCCCAGGGGTAGC 62.698 65.000 27.04 11.71 46.51 3.58
375 376 0.545548 GATCTAGGCCCCAGGGGTAG 60.546 65.000 27.04 19.82 46.51 3.18
376 377 1.552393 GATCTAGGCCCCAGGGGTA 59.448 63.158 27.04 10.60 46.51 3.69
377 378 2.290745 GATCTAGGCCCCAGGGGT 59.709 66.667 27.04 9.89 46.51 4.95
379 380 2.925170 CGGATCTAGGCCCCAGGG 60.925 72.222 0.00 0.00 38.57 4.45
380 381 3.631046 GCGGATCTAGGCCCCAGG 61.631 72.222 0.00 0.00 0.00 4.45
381 382 3.631046 GGCGGATCTAGGCCCCAG 61.631 72.222 0.00 0.00 43.64 4.45
386 387 1.068250 GACAGTGGCGGATCTAGGC 59.932 63.158 8.01 8.01 0.00 3.93
387 388 1.043116 TGGACAGTGGCGGATCTAGG 61.043 60.000 0.00 0.00 0.00 3.02
388 389 0.387202 CTGGACAGTGGCGGATCTAG 59.613 60.000 0.00 0.00 0.00 2.43
389 390 0.033503 TCTGGACAGTGGCGGATCTA 60.034 55.000 0.00 0.00 0.00 1.98
390 391 1.305297 TCTGGACAGTGGCGGATCT 60.305 57.895 0.00 0.00 0.00 2.75
391 392 1.142748 CTCTGGACAGTGGCGGATC 59.857 63.158 0.00 0.00 0.00 3.36
392 393 3.023949 GCTCTGGACAGTGGCGGAT 62.024 63.158 0.00 0.00 0.00 4.18
393 394 3.695606 GCTCTGGACAGTGGCGGA 61.696 66.667 0.00 0.00 0.00 5.54
394 395 3.320879 ATGCTCTGGACAGTGGCGG 62.321 63.158 0.00 0.00 33.62 6.13
395 396 2.104859 CATGCTCTGGACAGTGGCG 61.105 63.158 0.00 0.00 33.62 5.69
396 397 3.900855 CATGCTCTGGACAGTGGC 58.099 61.111 0.00 11.00 0.00 5.01
499 518 1.673168 GGAGGATTGTGAGGTGATGC 58.327 55.000 0.00 0.00 0.00 3.91
512 531 1.570979 GGTGATGGAAAAGGGGAGGAT 59.429 52.381 0.00 0.00 0.00 3.24
519 538 6.125029 AGTGAATATGAGGTGATGGAAAAGG 58.875 40.000 0.00 0.00 0.00 3.11
521 540 6.599244 GTGAGTGAATATGAGGTGATGGAAAA 59.401 38.462 0.00 0.00 0.00 2.29
536 881 4.102524 ACTCCTTGGTTGTGTGAGTGAATA 59.897 41.667 0.00 0.00 35.12 1.75
599 966 4.927422 TGCATTGAAGTCGATATCGTACA 58.073 39.130 23.61 15.79 40.80 2.90
617 984 1.339055 ACGCTTGTAGTGGTGATGCAT 60.339 47.619 0.00 0.00 0.00 3.96
622 989 1.069022 GTCGTACGCTTGTAGTGGTGA 60.069 52.381 11.24 0.00 0.00 4.02
626 993 2.896243 AGAGTCGTACGCTTGTAGTG 57.104 50.000 11.24 0.00 0.00 2.74
627 994 3.854666 TCTAGAGTCGTACGCTTGTAGT 58.145 45.455 11.24 0.00 29.15 2.73
700 1145 4.697756 TAGCAGCCGGTGTGGTGC 62.698 66.667 17.74 12.12 41.95 5.01
711 1156 3.063997 TGCGAATTTTTCTAGCTAGCAGC 59.936 43.478 18.83 11.43 42.84 5.25
729 1174 0.730265 GCGAATAAATGGTGGTGCGA 59.270 50.000 0.00 0.00 0.00 5.10
752 1466 3.307906 CCCAACCACCGTCCTCGA 61.308 66.667 0.00 0.00 39.71 4.04
799 1513 3.241804 GCAGAAGAAATAGTGACTTCGCG 60.242 47.826 0.00 0.00 42.95 5.87
838 1558 1.194098 GCGAGAGATACATGCATGTGC 59.806 52.381 36.72 27.92 41.89 4.57
844 1564 3.806521 ACAATTCAGCGAGAGATACATGC 59.193 43.478 0.00 0.00 0.00 4.06
845 1565 5.045872 TGACAATTCAGCGAGAGATACATG 58.954 41.667 0.00 0.00 0.00 3.21
846 1566 5.268118 TGACAATTCAGCGAGAGATACAT 57.732 39.130 0.00 0.00 0.00 2.29
847 1567 4.718940 TGACAATTCAGCGAGAGATACA 57.281 40.909 0.00 0.00 0.00 2.29
848 1568 5.521735 ACATTGACAATTCAGCGAGAGATAC 59.478 40.000 0.00 0.00 31.71 2.24
863 1583 1.135831 CATTACGCGGCACATTGACAA 60.136 47.619 12.47 0.00 0.00 3.18
969 1697 4.304110 CTTGAGTAGTCGGTGTTTTGCTA 58.696 43.478 0.00 0.00 0.00 3.49
1018 1747 3.522731 CAGGGCGAGGAGGACGAG 61.523 72.222 0.00 0.00 0.00 4.18
1225 1957 0.108207 CCCATGAGCCTGGATGAGTC 59.892 60.000 0.00 0.00 38.69 3.36
1317 2049 0.388391 CGTTGTACTTTCCGGCGGTA 60.388 55.000 27.32 14.78 0.00 4.02
1326 2058 0.817634 TGCTGCTGCCGTTGTACTTT 60.818 50.000 13.47 0.00 38.71 2.66
1374 2106 0.750546 CCATCTCACGGACCTCGGTA 60.751 60.000 0.00 0.00 44.45 4.02
1404 2136 2.340809 CTGAACACGCCGGTACCA 59.659 61.111 13.54 0.00 0.00 3.25
1455 2187 2.731572 CCGGTCTTGAGGTCTAAGGTA 58.268 52.381 0.00 0.00 0.00 3.08
1461 2193 2.282958 TCGCCGGTCTTGAGGTCT 60.283 61.111 1.90 0.00 0.00 3.85
1533 2265 6.110033 AGCAAACCCGTTTTCAAAAGTAAAT 58.890 32.000 0.00 0.00 0.00 1.40
1543 2275 4.612943 TGTGAAATAGCAAACCCGTTTTC 58.387 39.130 0.00 0.00 0.00 2.29
1597 2598 9.950496 AGACAAACAATATCAACTGTTCTAGAT 57.050 29.630 0.00 0.00 34.71 1.98
1674 2675 3.341043 CGCTGCAGCAGACAACGT 61.341 61.111 36.03 0.00 42.21 3.99
1783 2804 3.418684 AAAGCGTAAACAGGAGTCCAT 57.581 42.857 12.86 0.00 0.00 3.41
1862 2889 3.239449 TGTCTTGCCTTTCTCCACTCTA 58.761 45.455 0.00 0.00 0.00 2.43
2399 5569 8.963725 ACATTGCTAAATCTCATCTTCATGAAA 58.036 29.630 9.88 1.39 38.63 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.