Multiple sequence alignment - TraesCS3D01G486100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G486100 chr3D 100.000 2810 0 0 1 2810 582155816 582158625 0.000000e+00 5190.0
1 TraesCS3D01G486100 chr3D 87.278 959 82 18 864 1811 582162896 582161967 0.000000e+00 1059.0
2 TraesCS3D01G486100 chr3D 88.942 624 59 7 2028 2646 608781649 608782267 0.000000e+00 761.0
3 TraesCS3D01G486100 chr3D 88.694 628 60 8 2025 2646 138061347 138060725 0.000000e+00 756.0
4 TraesCS3D01G486100 chr3D 80.862 789 121 18 1041 1812 582056837 582056062 6.700000e-166 593.0
5 TraesCS3D01G486100 chr3D 85.124 121 14 3 1425 1541 582047204 582047324 1.370000e-23 121.0
6 TraesCS3D01G486100 chr3D 79.470 151 24 6 1583 1733 582047310 582047453 1.780000e-17 100.0
7 TraesCS3D01G486100 chr3B 91.426 1073 67 13 750 1810 779308129 779307070 0.000000e+00 1448.0
8 TraesCS3D01G486100 chr3B 89.074 961 69 18 864 1811 779302980 779303917 0.000000e+00 1160.0
9 TraesCS3D01G486100 chr3B 80.665 662 99 21 1041 1690 779525005 779525649 1.170000e-133 486.0
10 TraesCS3D01G486100 chr3B 91.020 245 15 4 905 1149 779310997 779310760 9.710000e-85 324.0
11 TraesCS3D01G486100 chr3B 81.695 295 49 3 1035 1325 778456143 778456436 1.010000e-59 241.0
12 TraesCS3D01G486100 chr3B 74.138 290 60 10 1043 1323 778439906 778440189 3.830000e-19 106.0
13 TraesCS3D01G486100 chr3B 89.855 69 5 2 750 817 779338116 779338049 1.390000e-13 87.9
14 TraesCS3D01G486100 chr4D 94.077 574 31 3 1 573 19346806 19347377 0.000000e+00 869.0
15 TraesCS3D01G486100 chr4D 88.648 599 56 9 2024 2617 480038629 480038038 0.000000e+00 719.0
16 TraesCS3D01G486100 chr4D 85.876 177 22 1 1538 1714 442903181 442903008 4.780000e-43 185.0
17 TraesCS3D01G486100 chr7D 91.574 629 46 4 2025 2649 455356775 455357400 0.000000e+00 861.0
18 TraesCS3D01G486100 chr7D 93.217 575 37 2 5 577 509531536 509530962 0.000000e+00 845.0
19 TraesCS3D01G486100 chr7D 92.241 580 35 7 2071 2646 82352344 82351771 0.000000e+00 813.0
20 TraesCS3D01G486100 chr7D 87.739 628 63 9 2025 2646 506094966 506095585 0.000000e+00 721.0
21 TraesCS3D01G486100 chr1D 93.554 574 35 2 4 575 461759979 461759406 0.000000e+00 854.0
22 TraesCS3D01G486100 chr5D 93.827 567 32 3 5 568 128586118 128586684 0.000000e+00 850.0
23 TraesCS3D01G486100 chr5D 90.016 621 52 7 2024 2640 238894729 238894115 0.000000e+00 795.0
24 TraesCS3D01G486100 chr6A 93.662 568 34 2 4 569 346587069 346586502 0.000000e+00 848.0
25 TraesCS3D01G486100 chr2D 93.380 574 35 3 4 575 399427906 399427334 0.000000e+00 846.0
26 TraesCS3D01G486100 chr6D 93.043 575 37 3 4 575 38240307 38239733 0.000000e+00 837.0
27 TraesCS3D01G486100 chr2B 93.031 574 36 4 4 574 17154576 17154004 0.000000e+00 835.0
28 TraesCS3D01G486100 chr2B 90.159 630 50 9 2025 2647 45649526 45648902 0.000000e+00 809.0
29 TraesCS3D01G486100 chr1A 92.746 579 40 2 1 577 482776188 482776766 0.000000e+00 835.0
30 TraesCS3D01G486100 chr1B 86.414 633 77 8 2024 2651 228244429 228243801 0.000000e+00 684.0
31 TraesCS3D01G486100 chr4B 82.486 354 54 5 1444 1796 552028114 552027768 1.260000e-78 303.0
32 TraesCS3D01G486100 chr4A 80.519 231 40 3 1538 1767 24758849 24759075 3.720000e-39 172.0
33 TraesCS3D01G486100 chrUn 91.525 118 9 1 1504 1621 292830735 292830619 8.060000e-36 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G486100 chr3D 582155816 582158625 2809 False 5190 5190 100.000 1 2810 1 chr3D.!!$F1 2809
1 TraesCS3D01G486100 chr3D 582161967 582162896 929 True 1059 1059 87.278 864 1811 1 chr3D.!!$R3 947
2 TraesCS3D01G486100 chr3D 608781649 608782267 618 False 761 761 88.942 2028 2646 1 chr3D.!!$F2 618
3 TraesCS3D01G486100 chr3D 138060725 138061347 622 True 756 756 88.694 2025 2646 1 chr3D.!!$R1 621
4 TraesCS3D01G486100 chr3D 582056062 582056837 775 True 593 593 80.862 1041 1812 1 chr3D.!!$R2 771
5 TraesCS3D01G486100 chr3B 779302980 779303917 937 False 1160 1160 89.074 864 1811 1 chr3B.!!$F3 947
6 TraesCS3D01G486100 chr3B 779307070 779310997 3927 True 886 1448 91.223 750 1810 2 chr3B.!!$R2 1060
7 TraesCS3D01G486100 chr3B 779525005 779525649 644 False 486 486 80.665 1041 1690 1 chr3B.!!$F4 649
8 TraesCS3D01G486100 chr4D 19346806 19347377 571 False 869 869 94.077 1 573 1 chr4D.!!$F1 572
9 TraesCS3D01G486100 chr4D 480038038 480038629 591 True 719 719 88.648 2024 2617 1 chr4D.!!$R2 593
10 TraesCS3D01G486100 chr7D 455356775 455357400 625 False 861 861 91.574 2025 2649 1 chr7D.!!$F1 624
11 TraesCS3D01G486100 chr7D 509530962 509531536 574 True 845 845 93.217 5 577 1 chr7D.!!$R2 572
12 TraesCS3D01G486100 chr7D 82351771 82352344 573 True 813 813 92.241 2071 2646 1 chr7D.!!$R1 575
13 TraesCS3D01G486100 chr7D 506094966 506095585 619 False 721 721 87.739 2025 2646 1 chr7D.!!$F2 621
14 TraesCS3D01G486100 chr1D 461759406 461759979 573 True 854 854 93.554 4 575 1 chr1D.!!$R1 571
15 TraesCS3D01G486100 chr5D 128586118 128586684 566 False 850 850 93.827 5 568 1 chr5D.!!$F1 563
16 TraesCS3D01G486100 chr5D 238894115 238894729 614 True 795 795 90.016 2024 2640 1 chr5D.!!$R1 616
17 TraesCS3D01G486100 chr6A 346586502 346587069 567 True 848 848 93.662 4 569 1 chr6A.!!$R1 565
18 TraesCS3D01G486100 chr2D 399427334 399427906 572 True 846 846 93.380 4 575 1 chr2D.!!$R1 571
19 TraesCS3D01G486100 chr6D 38239733 38240307 574 True 837 837 93.043 4 575 1 chr6D.!!$R1 571
20 TraesCS3D01G486100 chr2B 17154004 17154576 572 True 835 835 93.031 4 574 1 chr2B.!!$R1 570
21 TraesCS3D01G486100 chr2B 45648902 45649526 624 True 809 809 90.159 2025 2647 1 chr2B.!!$R2 622
22 TraesCS3D01G486100 chr1A 482776188 482776766 578 False 835 835 92.746 1 577 1 chr1A.!!$F1 576
23 TraesCS3D01G486100 chr1B 228243801 228244429 628 True 684 684 86.414 2024 2651 1 chr1B.!!$R1 627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
597 603 0.38539 AAAACACTTGCCTTGAGCCG 59.615 50.0 0.0 0.0 42.71 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1986 4165 0.037447 GGGGCTGCTCTATGGGATTC 59.963 60.0 0.0 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 4.919168 CACATGGCAACTGTGATTAACAAG 59.081 41.667 14.55 0.00 45.44 3.16
147 150 1.588674 TGGCAACTACTGTTTGACCG 58.411 50.000 0.00 0.00 33.52 4.79
169 172 5.758296 CCGTATGTGGCAAGTAGTTAATCAT 59.242 40.000 0.00 0.00 0.00 2.45
242 245 6.895204 ACATGGCAACTATAGTTAACCCAAAT 59.105 34.615 24.13 16.79 36.32 2.32
311 314 0.994247 ACATCTGCCAACCAGGATGA 59.006 50.000 0.00 0.00 42.05 2.92
357 360 1.138883 CTAACGTAGCTGCGCCAGA 59.861 57.895 24.60 5.97 32.44 3.86
369 372 2.672996 GCCAGAACGTGTGGGCAT 60.673 61.111 16.84 0.00 45.70 4.40
478 484 3.719268 TTCTAATGTCTGCCCACACAT 57.281 42.857 0.00 0.00 34.58 3.21
500 506 2.357836 CATGTGGGCTGCCTCCTT 59.642 61.111 19.68 4.78 0.00 3.36
501 507 1.304713 CATGTGGGCTGCCTCCTTT 60.305 57.895 19.68 0.00 0.00 3.11
516 522 1.066071 TCCTTTTCACACCACACACGA 60.066 47.619 0.00 0.00 0.00 4.35
579 585 2.037511 TCGGCGTCCTTCTTTTTAGGAA 59.962 45.455 6.85 0.00 43.18 3.36
580 586 2.809696 CGGCGTCCTTCTTTTTAGGAAA 59.190 45.455 0.00 0.00 43.18 3.13
582 588 4.543692 GGCGTCCTTCTTTTTAGGAAAAC 58.456 43.478 0.00 0.00 43.18 2.43
584 590 4.974275 GCGTCCTTCTTTTTAGGAAAACAC 59.026 41.667 0.00 0.00 43.18 3.32
585 591 5.220989 GCGTCCTTCTTTTTAGGAAAACACT 60.221 40.000 0.00 0.00 43.18 3.55
586 592 6.679638 GCGTCCTTCTTTTTAGGAAAACACTT 60.680 38.462 0.00 0.00 43.18 3.16
588 594 6.475727 GTCCTTCTTTTTAGGAAAACACTTGC 59.524 38.462 0.00 0.00 43.18 4.01
589 595 5.753438 CCTTCTTTTTAGGAAAACACTTGCC 59.247 40.000 0.00 0.00 34.56 4.52
590 596 6.406961 CCTTCTTTTTAGGAAAACACTTGCCT 60.407 38.462 0.00 0.00 43.81 4.75
591 597 6.538945 TCTTTTTAGGAAAACACTTGCCTT 57.461 33.333 0.00 0.00 37.26 4.35
592 598 6.337356 TCTTTTTAGGAAAACACTTGCCTTG 58.663 36.000 0.00 0.00 37.26 3.61
593 599 5.923733 TTTTAGGAAAACACTTGCCTTGA 57.076 34.783 0.00 0.00 37.26 3.02
596 602 1.269778 GGAAAACACTTGCCTTGAGCC 60.270 52.381 0.00 0.00 42.71 4.70
597 603 0.385390 AAAACACTTGCCTTGAGCCG 59.615 50.000 0.00 0.00 42.71 5.52
598 604 1.455383 AAACACTTGCCTTGAGCCGG 61.455 55.000 0.00 0.00 42.71 6.13
630 636 4.632458 GCGATCCGCGTCCTCCTC 62.632 72.222 4.92 0.00 44.55 3.71
631 637 2.902846 CGATCCGCGTCCTCCTCT 60.903 66.667 4.92 0.00 34.64 3.69
633 639 1.527380 GATCCGCGTCCTCCTCTCT 60.527 63.158 4.92 0.00 0.00 3.10
634 640 1.791103 GATCCGCGTCCTCCTCTCTG 61.791 65.000 4.92 0.00 0.00 3.35
635 641 3.522731 CCGCGTCCTCCTCTCTGG 61.523 72.222 4.92 0.00 37.10 3.86
636 642 3.522731 CGCGTCCTCCTCTCTGGG 61.523 72.222 0.00 0.00 36.20 4.45
637 643 3.844090 GCGTCCTCCTCTCTGGGC 61.844 72.222 0.00 0.00 36.20 5.36
639 645 3.844090 GTCCTCCTCTCTGGGCGC 61.844 72.222 0.00 0.00 36.20 6.53
642 648 4.504916 CTCCTCTCTGGGCGCGTG 62.505 72.222 8.43 0.00 36.20 5.34
645 651 2.811317 CTCTCTGGGCGCGTGTTC 60.811 66.667 8.43 0.00 0.00 3.18
646 652 3.288308 CTCTCTGGGCGCGTGTTCT 62.288 63.158 8.43 0.00 0.00 3.01
647 653 2.357517 CTCTGGGCGCGTGTTCTT 60.358 61.111 8.43 0.00 0.00 2.52
648 654 1.080093 CTCTGGGCGCGTGTTCTTA 60.080 57.895 8.43 0.00 0.00 2.10
649 655 1.078759 CTCTGGGCGCGTGTTCTTAG 61.079 60.000 8.43 0.00 0.00 2.18
656 662 2.810486 GCGTGTTCTTAGCGTGTCT 58.190 52.632 0.00 0.00 0.00 3.41
657 663 0.708918 GCGTGTTCTTAGCGTGTCTC 59.291 55.000 0.00 0.00 0.00 3.36
658 664 1.666311 GCGTGTTCTTAGCGTGTCTCT 60.666 52.381 0.00 0.00 0.00 3.10
659 665 2.662700 CGTGTTCTTAGCGTGTCTCTT 58.337 47.619 0.00 0.00 0.00 2.85
660 666 3.050619 CGTGTTCTTAGCGTGTCTCTTT 58.949 45.455 0.00 0.00 0.00 2.52
661 667 3.119792 CGTGTTCTTAGCGTGTCTCTTTC 59.880 47.826 0.00 0.00 0.00 2.62
662 668 4.299978 GTGTTCTTAGCGTGTCTCTTTCT 58.700 43.478 0.00 0.00 0.00 2.52
663 669 4.149046 GTGTTCTTAGCGTGTCTCTTTCTG 59.851 45.833 0.00 0.00 0.00 3.02
664 670 4.202121 TGTTCTTAGCGTGTCTCTTTCTGT 60.202 41.667 0.00 0.00 0.00 3.41
665 671 5.009310 TGTTCTTAGCGTGTCTCTTTCTGTA 59.991 40.000 0.00 0.00 0.00 2.74
666 672 5.700722 TCTTAGCGTGTCTCTTTCTGTAA 57.299 39.130 0.00 0.00 0.00 2.41
667 673 6.268825 TCTTAGCGTGTCTCTTTCTGTAAT 57.731 37.500 0.00 0.00 0.00 1.89
668 674 7.387119 TCTTAGCGTGTCTCTTTCTGTAATA 57.613 36.000 0.00 0.00 0.00 0.98
669 675 7.997482 TCTTAGCGTGTCTCTTTCTGTAATAT 58.003 34.615 0.00 0.00 0.00 1.28
670 676 8.467598 TCTTAGCGTGTCTCTTTCTGTAATATT 58.532 33.333 0.00 0.00 0.00 1.28
671 677 8.997621 TTAGCGTGTCTCTTTCTGTAATATTT 57.002 30.769 0.00 0.00 0.00 1.40
673 679 7.965045 AGCGTGTCTCTTTCTGTAATATTTTC 58.035 34.615 0.00 0.00 0.00 2.29
675 681 7.900352 GCGTGTCTCTTTCTGTAATATTTTCTG 59.100 37.037 0.00 0.00 0.00 3.02
678 684 9.283768 TGTCTCTTTCTGTAATATTTTCTGCAA 57.716 29.630 0.00 0.00 0.00 4.08
687 693 9.935682 CTGTAATATTTTCTGCAAATATCACGT 57.064 29.630 5.89 0.00 44.27 4.49
688 694 9.715123 TGTAATATTTTCTGCAAATATCACGTG 57.285 29.630 9.94 9.94 44.27 4.49
689 695 9.716507 GTAATATTTTCTGCAAATATCACGTGT 57.283 29.630 16.51 5.66 44.27 4.49
691 697 9.638239 AATATTTTCTGCAAATATCACGTGTTT 57.362 25.926 16.51 6.11 44.27 2.83
694 700 8.500837 TTTTCTGCAAATATCACGTGTTTTAG 57.499 30.769 16.51 9.45 0.00 1.85
695 701 7.428282 TTCTGCAAATATCACGTGTTTTAGA 57.572 32.000 16.51 11.36 0.00 2.10
696 702 7.428282 TCTGCAAATATCACGTGTTTTAGAA 57.572 32.000 16.51 0.00 0.00 2.10
698 704 8.346300 TCTGCAAATATCACGTGTTTTAGAAAA 58.654 29.630 16.51 0.00 0.00 2.29
699 705 9.128107 CTGCAAATATCACGTGTTTTAGAAAAT 57.872 29.630 16.51 0.42 0.00 1.82
700 706 9.469807 TGCAAATATCACGTGTTTTAGAAAATT 57.530 25.926 16.51 0.00 0.00 1.82
701 707 9.726034 GCAAATATCACGTGTTTTAGAAAATTG 57.274 29.630 16.51 9.13 0.00 2.32
707 713 6.902948 TCACGTGTTTTAGAAAATTGTCTTCG 59.097 34.615 16.51 3.20 0.00 3.79
708 714 6.140108 CACGTGTTTTAGAAAATTGTCTTCGG 59.860 38.462 7.58 0.00 0.00 4.30
710 716 5.974751 GTGTTTTAGAAAATTGTCTTCGGCA 59.025 36.000 2.78 0.00 0.00 5.69
712 718 6.474102 TGTTTTAGAAAATTGTCTTCGGCAAC 59.526 34.615 2.78 1.71 0.00 4.17
713 719 5.759506 TTAGAAAATTGTCTTCGGCAACA 57.240 34.783 2.78 0.00 0.00 3.33
714 720 4.647424 AGAAAATTGTCTTCGGCAACAA 57.353 36.364 0.00 0.00 39.52 2.83
716 722 4.097892 AGAAAATTGTCTTCGGCAACAACT 59.902 37.500 0.00 0.00 38.14 3.16
717 723 4.385358 AAATTGTCTTCGGCAACAACTT 57.615 36.364 0.00 0.00 38.14 2.66
718 724 5.508200 AAATTGTCTTCGGCAACAACTTA 57.492 34.783 0.00 0.00 38.14 2.24
720 726 4.966965 TTGTCTTCGGCAACAACTTAAA 57.033 36.364 0.00 0.00 30.73 1.52
721 727 4.966965 TGTCTTCGGCAACAACTTAAAA 57.033 36.364 0.00 0.00 0.00 1.52
722 728 4.664188 TGTCTTCGGCAACAACTTAAAAC 58.336 39.130 0.00 0.00 0.00 2.43
723 729 3.722289 GTCTTCGGCAACAACTTAAAACG 59.278 43.478 0.00 0.00 0.00 3.60
724 730 3.374678 TCTTCGGCAACAACTTAAAACGT 59.625 39.130 0.00 0.00 0.00 3.99
725 731 3.322230 TCGGCAACAACTTAAAACGTC 57.678 42.857 0.00 0.00 0.00 4.34
726 732 2.676839 TCGGCAACAACTTAAAACGTCA 59.323 40.909 0.00 0.00 0.00 4.35
727 733 3.126514 TCGGCAACAACTTAAAACGTCAA 59.873 39.130 0.00 0.00 0.00 3.18
728 734 3.852536 CGGCAACAACTTAAAACGTCAAA 59.147 39.130 0.00 0.00 0.00 2.69
730 736 5.543716 GGCAACAACTTAAAACGTCAAAAC 58.456 37.500 0.00 0.00 0.00 2.43
739 745 2.330041 CGTCAAAACGTGGCCACC 59.670 61.111 29.95 12.91 43.94 4.61
740 746 2.473760 CGTCAAAACGTGGCCACCA 61.474 57.895 29.95 4.29 43.94 4.17
749 755 4.182433 TGGCCACCACAAGCGTCA 62.182 61.111 0.00 0.00 0.00 4.35
750 756 2.904866 GGCCACCACAAGCGTCAA 60.905 61.111 0.00 0.00 0.00 3.18
751 757 2.485795 GGCCACCACAAGCGTCAAA 61.486 57.895 0.00 0.00 0.00 2.69
753 759 0.869880 GCCACCACAAGCGTCAAAAC 60.870 55.000 0.00 0.00 0.00 2.43
762 768 3.350377 CGTCAAAACGCCCACCAT 58.650 55.556 0.00 0.00 42.82 3.55
763 769 1.657556 CGTCAAAACGCCCACCATT 59.342 52.632 0.00 0.00 42.82 3.16
764 770 0.386731 CGTCAAAACGCCCACCATTC 60.387 55.000 0.00 0.00 42.82 2.67
767 773 1.067821 TCAAAACGCCCACCATTCAAC 59.932 47.619 0.00 0.00 0.00 3.18
778 2899 1.129809 CATTCAACCGTCGTGTCGC 59.870 57.895 0.00 0.00 0.00 5.19
780 2901 2.702751 ATTCAACCGTCGTGTCGCCA 62.703 55.000 0.00 0.00 0.00 5.69
791 2912 1.438651 GTGTCGCCATCACAAGCTAA 58.561 50.000 0.00 0.00 36.05 3.09
806 2927 7.946207 TCACAAGCTAATAACAATTGTTTGGA 58.054 30.769 27.66 11.69 39.31 3.53
811 2932 7.762382 AGCTAATAACAATTGTTTGGAGCTAC 58.238 34.615 31.46 16.94 40.16 3.58
817 2938 6.327279 ACAATTGTTTGGAGCTACCTTTAC 57.673 37.500 4.92 0.00 39.86 2.01
832 2953 0.814410 TTTACGCCGTGGAAGCACAA 60.814 50.000 0.00 0.00 0.00 3.33
897 3022 2.215478 CTGCCGTGAAGTTTCTCGCG 62.215 60.000 0.00 0.00 46.36 5.87
962 3091 2.963371 CCGGCCGGAGCTAGATAC 59.037 66.667 41.82 0.00 39.73 2.24
966 3095 0.969894 GGCCGGAGCTAGATACACAT 59.030 55.000 5.05 0.00 39.73 3.21
983 3112 3.244422 ACACATATACATCCCGGCGAAAT 60.244 43.478 9.30 0.00 0.00 2.17
1259 3394 3.494336 CGAGTACGCCGACGAGGT 61.494 66.667 0.00 0.00 43.93 3.85
1271 3409 3.068691 CGAGGTCTTCTCCGGCCA 61.069 66.667 2.24 0.00 39.30 5.36
1332 3470 2.034066 TTCTGGGCCCGCTTTCTG 59.966 61.111 19.37 0.83 0.00 3.02
1345 3486 1.135053 GCTTTCTGGACGAGGAGGTAC 60.135 57.143 0.00 0.00 0.00 3.34
1346 3487 2.168496 CTTTCTGGACGAGGAGGTACA 58.832 52.381 0.00 0.00 0.00 2.90
1348 3489 0.034380 TCTGGACGAGGAGGTACAGG 60.034 60.000 5.19 0.00 46.76 4.00
1349 3490 1.668101 CTGGACGAGGAGGTACAGGC 61.668 65.000 0.00 0.00 43.75 4.85
1377 3518 1.019278 ACCGCAGTAATTCAGCACCG 61.019 55.000 0.00 0.00 0.00 4.94
1379 3520 0.647410 CGCAGTAATTCAGCACCGAG 59.353 55.000 0.00 0.00 0.00 4.63
1393 3540 2.854805 GCACCGAGCTTTCAGTTTTCAC 60.855 50.000 0.00 0.00 41.15 3.18
1421 3568 3.218453 CTCGATGACTCTCCTACATGGT 58.782 50.000 0.00 0.00 37.07 3.55
1440 3616 1.154093 CATGCAGTGCAAGAAGCCG 60.154 57.895 23.90 1.01 43.62 5.52
1461 3637 3.635191 TGGATGGCGCTGTGGACA 61.635 61.111 7.64 0.00 0.00 4.02
1665 3844 3.923645 ACCGAGGAGGACCACCCA 61.924 66.667 4.04 0.00 45.00 4.51
1776 3955 2.103263 GGCGAGGAAGGATCTGTATGTT 59.897 50.000 0.00 0.00 0.00 2.71
1812 3991 0.462937 TGGTTGCACACAAGTAGCGT 60.463 50.000 0.00 0.00 36.16 5.07
1813 3992 1.202545 TGGTTGCACACAAGTAGCGTA 60.203 47.619 0.00 0.00 36.16 4.42
1814 3993 1.193874 GGTTGCACACAAGTAGCGTAC 59.806 52.381 0.00 0.00 36.16 3.67
1815 3994 2.132762 GTTGCACACAAGTAGCGTACT 58.867 47.619 0.00 0.00 41.73 2.73
1816 3995 1.778334 TGCACACAAGTAGCGTACTG 58.222 50.000 0.00 0.00 39.39 2.74
1817 3996 1.068474 GCACACAAGTAGCGTACTGG 58.932 55.000 0.00 0.00 39.39 4.00
1818 3997 1.604693 GCACACAAGTAGCGTACTGGT 60.605 52.381 0.00 0.89 43.65 4.00
1819 3998 2.325761 CACACAAGTAGCGTACTGGTC 58.674 52.381 3.17 0.00 40.94 4.02
1820 3999 1.958579 ACACAAGTAGCGTACTGGTCA 59.041 47.619 3.17 0.00 40.94 4.02
1821 4000 2.363038 ACACAAGTAGCGTACTGGTCAA 59.637 45.455 3.17 0.00 40.94 3.18
1822 4001 2.729882 CACAAGTAGCGTACTGGTCAAC 59.270 50.000 3.17 0.00 40.94 3.18
1823 4002 1.983605 CAAGTAGCGTACTGGTCAACG 59.016 52.381 0.00 0.00 39.39 4.10
1827 4006 3.156334 CGTACTGGTCAACGCTGC 58.844 61.111 0.00 0.00 31.66 5.25
1828 4007 2.380410 CGTACTGGTCAACGCTGCC 61.380 63.158 0.00 0.00 31.66 4.85
1829 4008 2.048597 TACTGGTCAACGCTGCCG 60.049 61.111 0.00 0.00 41.14 5.69
1830 4009 2.566570 TACTGGTCAACGCTGCCGA 61.567 57.895 0.00 0.00 38.29 5.54
1831 4010 2.089887 TACTGGTCAACGCTGCCGAA 62.090 55.000 0.00 0.00 38.29 4.30
1832 4011 2.203084 TGGTCAACGCTGCCGAAA 60.203 55.556 0.00 0.00 38.29 3.46
1833 4012 1.577328 CTGGTCAACGCTGCCGAAAT 61.577 55.000 0.00 0.00 38.29 2.17
1834 4013 1.134694 GGTCAACGCTGCCGAAATC 59.865 57.895 0.00 0.00 38.29 2.17
1835 4014 1.573829 GGTCAACGCTGCCGAAATCA 61.574 55.000 0.00 0.00 38.29 2.57
1836 4015 0.179215 GTCAACGCTGCCGAAATCAG 60.179 55.000 0.00 0.00 38.29 2.90
1837 4016 1.135315 CAACGCTGCCGAAATCAGG 59.865 57.895 0.00 0.00 38.29 3.86
1849 4028 5.147330 CCGAAATCAGGCCTATGTATACA 57.853 43.478 3.98 8.27 0.00 2.29
1850 4029 5.734720 CCGAAATCAGGCCTATGTATACAT 58.265 41.667 21.57 21.57 40.22 2.29
1851 4030 5.582269 CCGAAATCAGGCCTATGTATACATG 59.418 44.000 25.48 15.72 37.15 3.21
1852 4031 6.166279 CGAAATCAGGCCTATGTATACATGT 58.834 40.000 25.48 2.69 37.15 3.21
1853 4032 6.311445 CGAAATCAGGCCTATGTATACATGTC 59.689 42.308 25.48 13.10 37.15 3.06
1854 4033 4.783764 TCAGGCCTATGTATACATGTCG 57.216 45.455 25.48 14.29 37.15 4.35
1855 4034 4.403734 TCAGGCCTATGTATACATGTCGA 58.596 43.478 25.48 11.62 37.15 4.20
1856 4035 5.016831 TCAGGCCTATGTATACATGTCGAT 58.983 41.667 25.48 8.39 37.15 3.59
1857 4036 5.105063 CAGGCCTATGTATACATGTCGATG 58.895 45.833 25.48 15.31 37.15 3.84
1858 4037 3.865745 GGCCTATGTATACATGTCGATGC 59.134 47.826 25.48 17.22 37.15 3.91
1859 4038 4.494484 GCCTATGTATACATGTCGATGCA 58.506 43.478 25.48 1.13 37.15 3.96
1860 4039 5.111989 GCCTATGTATACATGTCGATGCAT 58.888 41.667 25.48 14.23 37.15 3.96
1861 4040 6.273071 GCCTATGTATACATGTCGATGCATA 58.727 40.000 25.48 14.77 37.15 3.14
1862 4041 6.925718 GCCTATGTATACATGTCGATGCATAT 59.074 38.462 25.48 0.71 37.15 1.78
1863 4042 7.115520 GCCTATGTATACATGTCGATGCATATC 59.884 40.741 25.48 9.68 37.15 1.63
1864 4043 7.596621 CCTATGTATACATGTCGATGCATATCC 59.403 40.741 25.48 0.00 37.15 2.59
1865 4044 5.339990 TGTATACATGTCGATGCATATCCG 58.660 41.667 0.00 0.00 32.14 4.18
1866 4045 4.718940 ATACATGTCGATGCATATCCGA 57.281 40.909 0.00 1.23 32.14 4.55
1867 4046 3.599730 ACATGTCGATGCATATCCGAT 57.400 42.857 11.54 0.00 32.14 4.18
1868 4047 3.256558 ACATGTCGATGCATATCCGATG 58.743 45.455 11.54 9.47 32.14 3.84
1869 4048 3.256558 CATGTCGATGCATATCCGATGT 58.743 45.455 11.54 2.39 0.00 3.06
1870 4049 3.385193 TGTCGATGCATATCCGATGTT 57.615 42.857 11.54 0.00 0.00 2.71
1871 4050 3.317150 TGTCGATGCATATCCGATGTTC 58.683 45.455 11.54 1.10 0.00 3.18
1872 4051 3.005791 TGTCGATGCATATCCGATGTTCT 59.994 43.478 11.54 0.00 0.00 3.01
1873 4052 3.990469 GTCGATGCATATCCGATGTTCTT 59.010 43.478 11.54 0.00 0.00 2.52
1874 4053 3.989817 TCGATGCATATCCGATGTTCTTG 59.010 43.478 0.00 0.00 0.00 3.02
1875 4054 3.124128 CGATGCATATCCGATGTTCTTGG 59.876 47.826 0.00 0.00 0.00 3.61
1876 4055 3.836365 TGCATATCCGATGTTCTTGGA 57.164 42.857 0.00 0.00 41.95 3.53
1877 4056 4.149511 TGCATATCCGATGTTCTTGGAA 57.850 40.909 0.00 0.00 41.02 3.53
1878 4057 4.717877 TGCATATCCGATGTTCTTGGAAT 58.282 39.130 0.00 0.00 41.02 3.01
1879 4058 5.863965 TGCATATCCGATGTTCTTGGAATA 58.136 37.500 0.00 0.00 41.02 1.75
1880 4059 6.295249 TGCATATCCGATGTTCTTGGAATAA 58.705 36.000 0.00 0.00 41.02 1.40
1881 4060 6.770303 TGCATATCCGATGTTCTTGGAATAAA 59.230 34.615 0.00 0.00 41.02 1.40
1882 4061 7.284261 TGCATATCCGATGTTCTTGGAATAAAA 59.716 33.333 0.00 0.00 41.02 1.52
1883 4062 8.134895 GCATATCCGATGTTCTTGGAATAAAAA 58.865 33.333 0.00 0.00 41.02 1.94
1884 4063 9.669353 CATATCCGATGTTCTTGGAATAAAAAG 57.331 33.333 0.00 0.00 41.02 2.27
1885 4064 7.938140 ATCCGATGTTCTTGGAATAAAAAGA 57.062 32.000 0.00 0.00 41.02 2.52
1886 4065 7.753309 TCCGATGTTCTTGGAATAAAAAGAA 57.247 32.000 0.00 0.00 39.48 2.52
1887 4066 7.816640 TCCGATGTTCTTGGAATAAAAAGAAG 58.183 34.615 0.00 0.00 41.72 2.85
1888 4067 7.447238 TCCGATGTTCTTGGAATAAAAAGAAGT 59.553 33.333 0.00 0.00 41.72 3.01
1889 4068 7.538678 CCGATGTTCTTGGAATAAAAAGAAGTG 59.461 37.037 0.00 0.00 41.72 3.16
1890 4069 8.289618 CGATGTTCTTGGAATAAAAAGAAGTGA 58.710 33.333 0.00 0.00 41.72 3.41
1891 4070 9.965824 GATGTTCTTGGAATAAAAAGAAGTGAA 57.034 29.630 0.00 0.00 41.72 3.18
1896 4075 9.801873 TCTTGGAATAAAAAGAAGTGAAAAGTG 57.198 29.630 0.00 0.00 29.59 3.16
1897 4076 8.419076 TTGGAATAAAAAGAAGTGAAAAGTGC 57.581 30.769 0.00 0.00 0.00 4.40
1898 4077 6.695278 TGGAATAAAAAGAAGTGAAAAGTGCG 59.305 34.615 0.00 0.00 0.00 5.34
1899 4078 6.695713 GGAATAAAAAGAAGTGAAAAGTGCGT 59.304 34.615 0.00 0.00 0.00 5.24
1900 4079 7.096599 GGAATAAAAAGAAGTGAAAAGTGCGTC 60.097 37.037 0.00 0.00 0.00 5.19
1901 4080 3.692791 AAAGAAGTGAAAAGTGCGTCC 57.307 42.857 0.00 0.00 0.00 4.79
1902 4081 1.217882 AGAAGTGAAAAGTGCGTCCG 58.782 50.000 0.00 0.00 0.00 4.79
1903 4082 0.384353 GAAGTGAAAAGTGCGTCCGC 60.384 55.000 4.42 4.42 42.35 5.54
1904 4083 1.782028 AAGTGAAAAGTGCGTCCGCC 61.782 55.000 9.43 0.74 41.09 6.13
1905 4084 3.342627 TGAAAAGTGCGTCCGCCG 61.343 61.111 9.43 0.00 41.09 6.46
1914 4093 4.647615 CGTCCGCCGCCTCCTATG 62.648 72.222 0.00 0.00 0.00 2.23
1915 4094 3.537874 GTCCGCCGCCTCCTATGT 61.538 66.667 0.00 0.00 0.00 2.29
1916 4095 2.762459 TCCGCCGCCTCCTATGTT 60.762 61.111 0.00 0.00 0.00 2.71
1917 4096 2.280186 CCGCCGCCTCCTATGTTC 60.280 66.667 0.00 0.00 0.00 3.18
1918 4097 2.499205 CGCCGCCTCCTATGTTCA 59.501 61.111 0.00 0.00 0.00 3.18
1919 4098 1.069765 CGCCGCCTCCTATGTTCAT 59.930 57.895 0.00 0.00 0.00 2.57
1920 4099 1.224069 CGCCGCCTCCTATGTTCATG 61.224 60.000 0.00 0.00 0.00 3.07
1921 4100 1.510480 GCCGCCTCCTATGTTCATGC 61.510 60.000 0.00 0.00 0.00 4.06
1922 4101 0.107456 CCGCCTCCTATGTTCATGCT 59.893 55.000 0.00 0.00 0.00 3.79
1923 4102 1.475751 CCGCCTCCTATGTTCATGCTT 60.476 52.381 0.00 0.00 0.00 3.91
1924 4103 1.869767 CGCCTCCTATGTTCATGCTTC 59.130 52.381 0.00 0.00 0.00 3.86
1925 4104 2.484417 CGCCTCCTATGTTCATGCTTCT 60.484 50.000 0.00 0.00 0.00 2.85
1926 4105 3.549794 GCCTCCTATGTTCATGCTTCTT 58.450 45.455 0.00 0.00 0.00 2.52
1927 4106 4.708177 GCCTCCTATGTTCATGCTTCTTA 58.292 43.478 0.00 0.00 0.00 2.10
1928 4107 5.312079 GCCTCCTATGTTCATGCTTCTTAT 58.688 41.667 0.00 0.00 0.00 1.73
1929 4108 5.411053 GCCTCCTATGTTCATGCTTCTTATC 59.589 44.000 0.00 0.00 0.00 1.75
1930 4109 5.936956 CCTCCTATGTTCATGCTTCTTATCC 59.063 44.000 0.00 0.00 0.00 2.59
1931 4110 6.464892 CCTCCTATGTTCATGCTTCTTATCCA 60.465 42.308 0.00 0.00 0.00 3.41
1932 4111 6.291377 TCCTATGTTCATGCTTCTTATCCAC 58.709 40.000 0.00 0.00 0.00 4.02
1933 4112 6.100279 TCCTATGTTCATGCTTCTTATCCACT 59.900 38.462 0.00 0.00 0.00 4.00
1934 4113 6.426328 CCTATGTTCATGCTTCTTATCCACTC 59.574 42.308 0.00 0.00 0.00 3.51
1935 4114 5.426689 TGTTCATGCTTCTTATCCACTCT 57.573 39.130 0.00 0.00 0.00 3.24
1936 4115 5.423015 TGTTCATGCTTCTTATCCACTCTC 58.577 41.667 0.00 0.00 0.00 3.20
1937 4116 5.046376 TGTTCATGCTTCTTATCCACTCTCA 60.046 40.000 0.00 0.00 0.00 3.27
1938 4117 5.016051 TCATGCTTCTTATCCACTCTCAC 57.984 43.478 0.00 0.00 0.00 3.51
1939 4118 3.895232 TGCTTCTTATCCACTCTCACC 57.105 47.619 0.00 0.00 0.00 4.02
1940 4119 2.501723 TGCTTCTTATCCACTCTCACCC 59.498 50.000 0.00 0.00 0.00 4.61
1941 4120 2.482142 GCTTCTTATCCACTCTCACCCG 60.482 54.545 0.00 0.00 0.00 5.28
1942 4121 2.526888 TCTTATCCACTCTCACCCGT 57.473 50.000 0.00 0.00 0.00 5.28
1943 4122 2.376109 TCTTATCCACTCTCACCCGTC 58.624 52.381 0.00 0.00 0.00 4.79
1944 4123 1.409427 CTTATCCACTCTCACCCGTCC 59.591 57.143 0.00 0.00 0.00 4.79
1945 4124 0.333652 TATCCACTCTCACCCGTCCA 59.666 55.000 0.00 0.00 0.00 4.02
1946 4125 0.544357 ATCCACTCTCACCCGTCCAA 60.544 55.000 0.00 0.00 0.00 3.53
1947 4126 1.185618 TCCACTCTCACCCGTCCAAG 61.186 60.000 0.00 0.00 0.00 3.61
1948 4127 1.472662 CCACTCTCACCCGTCCAAGT 61.473 60.000 0.00 0.00 0.00 3.16
1949 4128 0.393077 CACTCTCACCCGTCCAAGTT 59.607 55.000 0.00 0.00 0.00 2.66
1950 4129 0.393077 ACTCTCACCCGTCCAAGTTG 59.607 55.000 0.00 0.00 0.00 3.16
1951 4130 0.320771 CTCTCACCCGTCCAAGTTGG 60.321 60.000 16.36 16.36 39.43 3.77
1952 4131 0.761323 TCTCACCCGTCCAAGTTGGA 60.761 55.000 21.05 21.05 45.98 3.53
1966 4145 5.891551 TCCAAGTTGGATTTCTAAATAGGGC 59.108 40.000 21.05 0.00 42.67 5.19
1967 4146 5.069119 CCAAGTTGGATTTCTAAATAGGGCC 59.931 44.000 17.60 0.00 40.96 5.80
1968 4147 4.461198 AGTTGGATTTCTAAATAGGGCCG 58.539 43.478 0.00 0.00 0.00 6.13
1969 4148 3.502123 TGGATTTCTAAATAGGGCCGG 57.498 47.619 0.00 0.00 0.00 6.13
1970 4149 3.050089 TGGATTTCTAAATAGGGCCGGA 58.950 45.455 5.05 0.00 0.00 5.14
1971 4150 3.181448 TGGATTTCTAAATAGGGCCGGAC 60.181 47.826 5.05 0.00 0.00 4.79
1972 4151 3.409570 GATTTCTAAATAGGGCCGGACC 58.590 50.000 22.85 22.85 37.93 4.46
1973 4152 0.754472 TTCTAAATAGGGCCGGACCG 59.246 55.000 24.13 5.25 40.62 4.79
1984 4163 2.978824 CGGACCGGTCTGGATGTT 59.021 61.111 32.28 0.00 42.00 2.71
1985 4164 1.153628 CGGACCGGTCTGGATGTTC 60.154 63.158 32.28 13.64 42.00 3.18
1986 4165 1.153628 GGACCGGTCTGGATGTTCG 60.154 63.158 32.52 0.00 42.00 3.95
1987 4166 1.601419 GGACCGGTCTGGATGTTCGA 61.601 60.000 32.52 0.00 42.00 3.71
1988 4167 0.245539 GACCGGTCTGGATGTTCGAA 59.754 55.000 27.64 0.00 42.00 3.71
1989 4168 0.902531 ACCGGTCTGGATGTTCGAAT 59.097 50.000 0.00 0.00 42.00 3.34
1990 4169 1.134788 ACCGGTCTGGATGTTCGAATC 60.135 52.381 0.00 0.00 42.00 2.52
1991 4170 1.571919 CGGTCTGGATGTTCGAATCC 58.428 55.000 10.34 10.34 45.57 3.01
1992 4171 1.806623 CGGTCTGGATGTTCGAATCCC 60.807 57.143 13.89 10.06 44.88 3.85
1993 4172 1.209504 GGTCTGGATGTTCGAATCCCA 59.790 52.381 13.89 13.49 44.88 4.37
1994 4173 2.158755 GGTCTGGATGTTCGAATCCCAT 60.159 50.000 13.89 7.31 44.88 4.00
1995 4174 3.071023 GGTCTGGATGTTCGAATCCCATA 59.929 47.826 13.89 6.43 44.88 2.74
1996 4175 4.310769 GTCTGGATGTTCGAATCCCATAG 58.689 47.826 13.89 6.37 44.88 2.23
1997 4176 4.039245 GTCTGGATGTTCGAATCCCATAGA 59.961 45.833 13.89 8.30 44.88 1.98
1998 4177 4.281941 TCTGGATGTTCGAATCCCATAGAG 59.718 45.833 13.89 5.77 44.88 2.43
1999 4178 3.244215 TGGATGTTCGAATCCCATAGAGC 60.244 47.826 13.89 0.00 44.88 4.09
2000 4179 3.244215 GGATGTTCGAATCCCATAGAGCA 60.244 47.826 0.00 0.00 40.36 4.26
2001 4180 3.459232 TGTTCGAATCCCATAGAGCAG 57.541 47.619 0.00 0.00 0.00 4.24
2002 4181 2.139118 GTTCGAATCCCATAGAGCAGC 58.861 52.381 0.00 0.00 0.00 5.25
2003 4182 0.681733 TCGAATCCCATAGAGCAGCC 59.318 55.000 0.00 0.00 0.00 4.85
2004 4183 0.321122 CGAATCCCATAGAGCAGCCC 60.321 60.000 0.00 0.00 0.00 5.19
2005 4184 0.037447 GAATCCCATAGAGCAGCCCC 59.963 60.000 0.00 0.00 0.00 5.80
2006 4185 0.698886 AATCCCATAGAGCAGCCCCA 60.699 55.000 0.00 0.00 0.00 4.96
2007 4186 0.698886 ATCCCATAGAGCAGCCCCAA 60.699 55.000 0.00 0.00 0.00 4.12
2008 4187 0.918799 TCCCATAGAGCAGCCCCAAA 60.919 55.000 0.00 0.00 0.00 3.28
2009 4188 0.186873 CCCATAGAGCAGCCCCAAAT 59.813 55.000 0.00 0.00 0.00 2.32
2010 4189 1.613836 CCATAGAGCAGCCCCAAATC 58.386 55.000 0.00 0.00 0.00 2.17
2011 4190 1.233019 CATAGAGCAGCCCCAAATCG 58.767 55.000 0.00 0.00 0.00 3.34
2012 4191 1.131638 ATAGAGCAGCCCCAAATCGA 58.868 50.000 0.00 0.00 0.00 3.59
2013 4192 0.465705 TAGAGCAGCCCCAAATCGAG 59.534 55.000 0.00 0.00 0.00 4.04
2014 4193 1.821332 GAGCAGCCCCAAATCGAGG 60.821 63.158 0.00 0.00 0.00 4.63
2015 4194 2.257409 GAGCAGCCCCAAATCGAGGA 62.257 60.000 0.00 0.00 0.00 3.71
2016 4195 1.821332 GCAGCCCCAAATCGAGGAG 60.821 63.158 0.00 0.00 0.00 3.69
2017 4196 1.821332 CAGCCCCAAATCGAGGAGC 60.821 63.158 0.00 0.00 0.00 4.70
2018 4197 1.997874 AGCCCCAAATCGAGGAGCT 60.998 57.895 0.00 0.00 0.00 4.09
2019 4198 1.524849 GCCCCAAATCGAGGAGCTC 60.525 63.158 4.71 4.71 0.00 4.09
2020 4199 1.977293 GCCCCAAATCGAGGAGCTCT 61.977 60.000 14.64 0.00 0.00 4.09
2021 4200 0.105778 CCCCAAATCGAGGAGCTCTC 59.894 60.000 14.64 8.29 39.10 3.20
2090 4271 6.954487 AAAAACCCTATTAGGATAAAGGCG 57.046 37.500 11.52 0.00 37.67 5.52
2111 4292 4.722194 CGTGAGACAAAATGTTACCCATG 58.278 43.478 0.00 0.00 32.82 3.66
2260 4443 4.142902 ACACTTTGTCGTGAGTTTGTCAAG 60.143 41.667 0.00 0.00 36.74 3.02
2323 4506 6.417635 GTGTTGATGTTTTGATGTGTAGTTGG 59.582 38.462 0.00 0.00 0.00 3.77
2595 4800 3.914426 AAGCTCAAATGGGACGAGTAT 57.086 42.857 0.00 0.00 0.00 2.12
2608 4813 1.062734 ACGAGTATGGGTATGGGGTGA 60.063 52.381 0.00 0.00 0.00 4.02
2649 4854 2.832498 GGGTGCCATCCCTAGCTC 59.168 66.667 0.00 0.00 43.85 4.09
2650 4855 1.768077 GGGTGCCATCCCTAGCTCT 60.768 63.158 0.00 0.00 43.85 4.09
2651 4856 1.751563 GGTGCCATCCCTAGCTCTC 59.248 63.158 0.00 0.00 0.00 3.20
2652 4857 1.365633 GTGCCATCCCTAGCTCTCG 59.634 63.158 0.00 0.00 0.00 4.04
2653 4858 2.341911 GCCATCCCTAGCTCTCGC 59.658 66.667 0.00 0.00 0.00 5.03
2654 4859 2.647875 CCATCCCTAGCTCTCGCG 59.352 66.667 0.00 0.00 42.32 5.87
2655 4860 2.647875 CATCCCTAGCTCTCGCGG 59.352 66.667 6.13 0.00 42.32 6.46
2656 4861 1.899054 CATCCCTAGCTCTCGCGGA 60.899 63.158 6.13 1.01 42.32 5.54
2657 4862 1.602323 ATCCCTAGCTCTCGCGGAG 60.602 63.158 17.10 17.10 44.49 4.63
2658 4863 2.346284 ATCCCTAGCTCTCGCGGAGT 62.346 60.000 20.69 12.65 43.62 3.85
2659 4864 2.122167 CCCTAGCTCTCGCGGAGTT 61.122 63.158 20.69 18.18 43.62 3.01
2660 4865 1.357334 CCTAGCTCTCGCGGAGTTC 59.643 63.158 20.69 9.28 43.62 3.01
2661 4866 1.010574 CTAGCTCTCGCGGAGTTCG 60.011 63.158 20.69 10.92 43.62 3.95
2662 4867 1.429927 CTAGCTCTCGCGGAGTTCGA 61.430 60.000 20.69 5.50 43.62 3.71
2663 4868 1.022982 TAGCTCTCGCGGAGTTCGAA 61.023 55.000 20.69 0.00 43.62 3.71
2664 4869 1.226717 GCTCTCGCGGAGTTCGAAT 60.227 57.895 20.69 0.00 43.62 3.34
2665 4870 1.475441 GCTCTCGCGGAGTTCGAATG 61.475 60.000 20.69 0.00 43.62 2.67
2666 4871 0.179161 CTCTCGCGGAGTTCGAATGT 60.179 55.000 6.13 0.00 42.43 2.71
2667 4872 0.179171 TCTCGCGGAGTTCGAATGTC 60.179 55.000 6.13 1.18 42.43 3.06
2668 4873 1.140407 CTCGCGGAGTTCGAATGTCC 61.140 60.000 16.11 16.11 42.43 4.02
2670 4875 3.384927 CGGAGTTCGAATGTCCGC 58.615 61.111 28.39 8.44 46.18 5.54
2671 4876 1.153823 CGGAGTTCGAATGTCCGCT 60.154 57.895 28.39 10.51 46.18 5.52
2672 4877 0.099968 CGGAGTTCGAATGTCCGCTA 59.900 55.000 28.39 0.00 46.18 4.26
2673 4878 1.557651 GGAGTTCGAATGTCCGCTAC 58.442 55.000 12.33 0.00 0.00 3.58
2674 4879 1.135199 GGAGTTCGAATGTCCGCTACA 60.135 52.381 12.33 0.00 43.86 2.74
2675 4880 1.918609 GAGTTCGAATGTCCGCTACAC 59.081 52.381 0.00 0.00 42.09 2.90
2676 4881 1.544691 AGTTCGAATGTCCGCTACACT 59.455 47.619 0.00 0.00 42.09 3.55
2677 4882 1.654105 GTTCGAATGTCCGCTACACTG 59.346 52.381 0.00 0.00 42.09 3.66
2678 4883 0.172578 TCGAATGTCCGCTACACTGG 59.827 55.000 0.00 0.00 42.09 4.00
2679 4884 0.172578 CGAATGTCCGCTACACTGGA 59.827 55.000 0.00 0.00 42.09 3.86
2684 4889 2.568003 TCCGCTACACTGGACTCTG 58.432 57.895 0.00 0.00 0.00 3.35
2685 4890 0.037734 TCCGCTACACTGGACTCTGA 59.962 55.000 0.00 0.00 0.00 3.27
2686 4891 1.107114 CCGCTACACTGGACTCTGAT 58.893 55.000 0.00 0.00 0.00 2.90
2687 4892 2.092592 TCCGCTACACTGGACTCTGATA 60.093 50.000 0.00 0.00 0.00 2.15
2688 4893 2.887783 CCGCTACACTGGACTCTGATAT 59.112 50.000 0.00 0.00 0.00 1.63
2689 4894 3.057876 CCGCTACACTGGACTCTGATATC 60.058 52.174 0.00 0.00 0.00 1.63
2690 4895 3.057876 CGCTACACTGGACTCTGATATCC 60.058 52.174 0.00 1.99 35.37 2.59
2691 4896 3.257127 GCTACACTGGACTCTGATATCCC 59.743 52.174 0.00 0.00 33.69 3.85
2692 4897 2.311463 ACACTGGACTCTGATATCCCG 58.689 52.381 0.00 2.84 33.69 5.14
2693 4898 2.091830 ACACTGGACTCTGATATCCCGA 60.092 50.000 0.00 0.00 33.69 5.14
2694 4899 2.959030 CACTGGACTCTGATATCCCGAA 59.041 50.000 0.00 0.00 33.69 4.30
2695 4900 2.959707 ACTGGACTCTGATATCCCGAAC 59.040 50.000 0.00 0.00 33.69 3.95
2696 4901 2.297597 CTGGACTCTGATATCCCGAACC 59.702 54.545 0.00 4.68 33.69 3.62
2697 4902 2.317040 GGACTCTGATATCCCGAACCA 58.683 52.381 0.00 0.00 0.00 3.67
2698 4903 2.036089 GGACTCTGATATCCCGAACCAC 59.964 54.545 0.00 0.00 0.00 4.16
2699 4904 2.036089 GACTCTGATATCCCGAACCACC 59.964 54.545 0.00 0.00 0.00 4.61
2700 4905 1.344763 CTCTGATATCCCGAACCACCC 59.655 57.143 0.00 0.00 0.00 4.61
2701 4906 1.128200 CTGATATCCCGAACCACCCA 58.872 55.000 0.00 0.00 0.00 4.51
2702 4907 1.070758 CTGATATCCCGAACCACCCAG 59.929 57.143 0.00 0.00 0.00 4.45
2703 4908 1.343580 TGATATCCCGAACCACCCAGA 60.344 52.381 0.00 0.00 0.00 3.86
2704 4909 1.766496 GATATCCCGAACCACCCAGAA 59.234 52.381 0.00 0.00 0.00 3.02
2705 4910 0.906775 TATCCCGAACCACCCAGAAC 59.093 55.000 0.00 0.00 0.00 3.01
2706 4911 1.848886 ATCCCGAACCACCCAGAACC 61.849 60.000 0.00 0.00 0.00 3.62
2707 4912 2.033602 CCGAACCACCCAGAACCC 59.966 66.667 0.00 0.00 0.00 4.11
2708 4913 2.033602 CGAACCACCCAGAACCCC 59.966 66.667 0.00 0.00 0.00 4.95
2709 4914 2.824880 CGAACCACCCAGAACCCCA 61.825 63.158 0.00 0.00 0.00 4.96
2710 4915 1.774300 GAACCACCCAGAACCCCAT 59.226 57.895 0.00 0.00 0.00 4.00
2711 4916 0.114364 GAACCACCCAGAACCCCATT 59.886 55.000 0.00 0.00 0.00 3.16
2712 4917 0.114364 AACCACCCAGAACCCCATTC 59.886 55.000 0.00 0.00 37.62 2.67
2713 4918 1.071314 ACCACCCAGAACCCCATTCA 61.071 55.000 0.00 0.00 40.09 2.57
2714 4919 0.323725 CCACCCAGAACCCCATTCAG 60.324 60.000 0.00 0.00 40.09 3.02
2715 4920 0.698238 CACCCAGAACCCCATTCAGA 59.302 55.000 0.00 0.00 40.09 3.27
2716 4921 0.995024 ACCCAGAACCCCATTCAGAG 59.005 55.000 0.00 0.00 40.09 3.35
2717 4922 0.394899 CCCAGAACCCCATTCAGAGC 60.395 60.000 0.00 0.00 40.09 4.09
2718 4923 0.329261 CCAGAACCCCATTCAGAGCA 59.671 55.000 0.00 0.00 40.09 4.26
2719 4924 1.064166 CCAGAACCCCATTCAGAGCAT 60.064 52.381 0.00 0.00 40.09 3.79
2720 4925 2.022195 CAGAACCCCATTCAGAGCATG 58.978 52.381 0.00 0.00 40.09 4.06
2721 4926 0.743097 GAACCCCATTCAGAGCATGC 59.257 55.000 10.51 10.51 37.27 4.06
2722 4927 1.033746 AACCCCATTCAGAGCATGCG 61.034 55.000 13.01 0.00 0.00 4.73
2723 4928 2.719979 CCCATTCAGAGCATGCGC 59.280 61.111 14.17 14.17 38.99 6.09
2724 4929 2.116533 CCCATTCAGAGCATGCGCA 61.117 57.895 23.73 14.96 42.27 6.09
2725 4930 1.452953 CCCATTCAGAGCATGCGCAT 61.453 55.000 23.73 19.28 42.27 4.73
2726 4931 0.384309 CCATTCAGAGCATGCGCATT 59.616 50.000 22.81 7.35 42.27 3.56
2727 4932 1.202371 CCATTCAGAGCATGCGCATTT 60.202 47.619 22.81 12.42 42.27 2.32
2728 4933 2.536365 CATTCAGAGCATGCGCATTTT 58.464 42.857 22.81 12.00 42.27 1.82
2729 4934 2.267188 TTCAGAGCATGCGCATTTTC 57.733 45.000 22.81 20.20 42.27 2.29
2730 4935 1.166989 TCAGAGCATGCGCATTTTCA 58.833 45.000 22.81 3.59 42.27 2.69
2731 4936 1.135603 TCAGAGCATGCGCATTTTCAC 60.136 47.619 22.81 11.35 42.27 3.18
2732 4937 0.883153 AGAGCATGCGCATTTTCACA 59.117 45.000 22.81 0.00 42.27 3.58
2733 4938 1.270274 AGAGCATGCGCATTTTCACAA 59.730 42.857 22.81 0.00 42.27 3.33
2734 4939 2.094390 AGAGCATGCGCATTTTCACAAT 60.094 40.909 22.81 2.51 42.27 2.71
2735 4940 2.264813 AGCATGCGCATTTTCACAATC 58.735 42.857 22.81 1.55 42.27 2.67
2736 4941 2.094390 AGCATGCGCATTTTCACAATCT 60.094 40.909 22.81 3.85 42.27 2.40
2737 4942 2.028763 GCATGCGCATTTTCACAATCTG 59.971 45.455 22.81 7.57 38.36 2.90
2738 4943 1.700523 TGCGCATTTTCACAATCTGC 58.299 45.000 5.66 0.00 0.00 4.26
2739 4944 0.994263 GCGCATTTTCACAATCTGCC 59.006 50.000 0.30 0.00 0.00 4.85
2740 4945 1.669502 GCGCATTTTCACAATCTGCCA 60.670 47.619 0.30 0.00 0.00 4.92
2741 4946 1.987770 CGCATTTTCACAATCTGCCAC 59.012 47.619 0.00 0.00 0.00 5.01
2742 4947 2.352030 CGCATTTTCACAATCTGCCACT 60.352 45.455 0.00 0.00 0.00 4.00
2743 4948 3.119884 CGCATTTTCACAATCTGCCACTA 60.120 43.478 0.00 0.00 0.00 2.74
2744 4949 4.168760 GCATTTTCACAATCTGCCACTAC 58.831 43.478 0.00 0.00 0.00 2.73
2745 4950 4.082571 GCATTTTCACAATCTGCCACTACT 60.083 41.667 0.00 0.00 0.00 2.57
2746 4951 5.565439 GCATTTTCACAATCTGCCACTACTT 60.565 40.000 0.00 0.00 0.00 2.24
2747 4952 5.689383 TTTTCACAATCTGCCACTACTTC 57.311 39.130 0.00 0.00 0.00 3.01
2748 4953 3.334583 TCACAATCTGCCACTACTTCC 57.665 47.619 0.00 0.00 0.00 3.46
2749 4954 2.637382 TCACAATCTGCCACTACTTCCA 59.363 45.455 0.00 0.00 0.00 3.53
2750 4955 2.744202 CACAATCTGCCACTACTTCCAC 59.256 50.000 0.00 0.00 0.00 4.02
2751 4956 2.371841 ACAATCTGCCACTACTTCCACA 59.628 45.455 0.00 0.00 0.00 4.17
2752 4957 2.744202 CAATCTGCCACTACTTCCACAC 59.256 50.000 0.00 0.00 0.00 3.82
2753 4958 0.685097 TCTGCCACTACTTCCACACC 59.315 55.000 0.00 0.00 0.00 4.16
2754 4959 0.321653 CTGCCACTACTTCCACACCC 60.322 60.000 0.00 0.00 0.00 4.61
2755 4960 1.375523 GCCACTACTTCCACACCCG 60.376 63.158 0.00 0.00 0.00 5.28
2756 4961 1.295423 CCACTACTTCCACACCCGG 59.705 63.158 0.00 0.00 0.00 5.73
2757 4962 1.375523 CACTACTTCCACACCCGGC 60.376 63.158 0.00 0.00 0.00 6.13
2758 4963 2.125673 CTACTTCCACACCCGGCG 60.126 66.667 0.00 0.00 0.00 6.46
2759 4964 2.601067 TACTTCCACACCCGGCGA 60.601 61.111 9.30 0.00 0.00 5.54
2760 4965 2.558554 CTACTTCCACACCCGGCGAG 62.559 65.000 9.30 0.00 0.00 5.03
2761 4966 3.691342 CTTCCACACCCGGCGAGA 61.691 66.667 9.30 0.00 0.00 4.04
2762 4967 3.000819 TTCCACACCCGGCGAGAT 61.001 61.111 9.30 0.00 0.00 2.75
2763 4968 3.309436 TTCCACACCCGGCGAGATG 62.309 63.158 9.30 5.91 0.00 2.90
2764 4969 4.082523 CCACACCCGGCGAGATGT 62.083 66.667 9.30 6.65 0.00 3.06
2765 4970 2.509336 CACACCCGGCGAGATGTC 60.509 66.667 9.30 0.00 0.00 3.06
2766 4971 3.771160 ACACCCGGCGAGATGTCC 61.771 66.667 9.30 0.00 0.00 4.02
2767 4972 4.530857 CACCCGGCGAGATGTCCC 62.531 72.222 9.30 0.00 0.00 4.46
2770 4975 3.470888 CCGGCGAGATGTCCCCTT 61.471 66.667 9.30 0.00 0.00 3.95
2771 4976 2.107141 CGGCGAGATGTCCCCTTC 59.893 66.667 0.00 0.00 0.00 3.46
2772 4977 2.107141 GGCGAGATGTCCCCTTCG 59.893 66.667 0.00 0.00 0.00 3.79
2773 4978 2.423898 GGCGAGATGTCCCCTTCGA 61.424 63.158 0.00 0.00 0.00 3.71
2774 4979 1.742768 GCGAGATGTCCCCTTCGAT 59.257 57.895 0.00 0.00 0.00 3.59
2775 4980 0.319125 GCGAGATGTCCCCTTCGATC 60.319 60.000 0.00 0.00 0.00 3.69
2776 4981 0.039978 CGAGATGTCCCCTTCGATCG 60.040 60.000 9.36 9.36 0.00 3.69
2777 4982 1.033574 GAGATGTCCCCTTCGATCGT 58.966 55.000 15.94 0.00 0.00 3.73
2778 4983 0.747255 AGATGTCCCCTTCGATCGTG 59.253 55.000 15.94 9.28 0.00 4.35
2779 4984 0.744874 GATGTCCCCTTCGATCGTGA 59.255 55.000 15.94 4.40 0.00 4.35
2780 4985 1.136305 GATGTCCCCTTCGATCGTGAA 59.864 52.381 15.94 1.72 0.00 3.18
2781 4986 0.530744 TGTCCCCTTCGATCGTGAAG 59.469 55.000 15.94 12.00 43.98 3.02
2782 4987 0.815734 GTCCCCTTCGATCGTGAAGA 59.184 55.000 15.94 4.38 46.64 2.87
2783 4988 1.103803 TCCCCTTCGATCGTGAAGAG 58.896 55.000 15.94 3.04 46.64 2.85
2784 4989 0.103208 CCCCTTCGATCGTGAAGAGG 59.897 60.000 15.94 8.79 46.64 3.69
2785 4990 0.103208 CCCTTCGATCGTGAAGAGGG 59.897 60.000 15.94 18.64 46.64 4.30
2786 4991 0.528684 CCTTCGATCGTGAAGAGGGC 60.529 60.000 15.94 0.00 46.64 5.19
2787 4992 0.867753 CTTCGATCGTGAAGAGGGCG 60.868 60.000 15.94 0.00 46.64 6.13
2788 4993 2.278857 CGATCGTGAAGAGGGCGG 60.279 66.667 7.03 0.00 0.00 6.13
2789 4994 2.107141 GATCGTGAAGAGGGCGGG 59.893 66.667 0.00 0.00 0.00 6.13
2790 4995 3.447025 GATCGTGAAGAGGGCGGGG 62.447 68.421 0.00 0.00 0.00 5.73
2792 4997 4.452733 CGTGAAGAGGGCGGGGTC 62.453 72.222 0.00 0.00 0.00 4.46
2793 4998 4.097361 GTGAAGAGGGCGGGGTCC 62.097 72.222 0.00 0.00 0.00 4.46
2794 4999 4.332543 TGAAGAGGGCGGGGTCCT 62.333 66.667 0.00 0.00 42.15 3.85
2800 5005 4.828296 GGGCGGGGTCCTCGTCTA 62.828 72.222 16.85 0.00 32.30 2.59
2801 5006 3.217743 GGCGGGGTCCTCGTCTAG 61.218 72.222 13.92 0.00 0.00 2.43
2803 5008 2.518825 CGGGGTCCTCGTCTAGGG 60.519 72.222 1.83 0.00 46.55 3.53
2804 5009 3.013631 GGGGTCCTCGTCTAGGGA 58.986 66.667 0.00 0.00 46.55 4.20
2805 5010 1.309006 GGGGTCCTCGTCTAGGGAA 59.691 63.158 0.00 0.00 46.55 3.97
2806 5011 0.756070 GGGGTCCTCGTCTAGGGAAG 60.756 65.000 0.00 0.00 46.55 3.46
2807 5012 0.258194 GGGTCCTCGTCTAGGGAAGA 59.742 60.000 0.00 0.00 46.55 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 7.280876 CAGTAGTTGCCATGTGTGTTTATCTAT 59.719 37.037 0.00 0.00 0.00 1.98
117 118 5.070001 ACAGTAGTTGCCATGTGTGTTTAT 58.930 37.500 0.00 0.00 0.00 1.40
147 150 8.548721 GTGTATGATTAACTACTTGCCACATAC 58.451 37.037 0.00 0.00 38.41 2.39
169 172 1.068281 TCAAACCGTAGTTGCCGTGTA 59.932 47.619 0.00 0.00 35.97 2.90
242 245 9.151471 GTTGTAAAAGCATGACAACTCTATCTA 57.849 33.333 16.17 0.00 46.06 1.98
311 314 2.277084 GCGGGATGACGATTTAGTTGT 58.723 47.619 0.00 0.00 35.47 3.32
357 360 0.463620 AGCAAAAATGCCCACACGTT 59.536 45.000 0.00 0.00 34.90 3.99
500 506 2.031258 ACATCGTGTGTGGTGTGAAA 57.969 45.000 0.00 0.00 40.28 2.69
501 507 3.770625 ACATCGTGTGTGGTGTGAA 57.229 47.368 0.00 0.00 40.28 3.18
516 522 1.233950 TTTGACATGCGCCGACACAT 61.234 50.000 4.18 0.00 0.00 3.21
522 528 1.870402 TGGTATATTTGACATGCGCCG 59.130 47.619 4.18 0.00 0.00 6.46
579 585 1.455383 CCGGCTCAAGGCAAGTGTTT 61.455 55.000 4.35 0.00 44.01 2.83
580 586 1.898574 CCGGCTCAAGGCAAGTGTT 60.899 57.895 4.35 0.00 44.01 3.32
614 620 2.899044 GAGAGGAGGACGCGGATCG 61.899 68.421 12.47 0.00 45.38 3.69
615 621 1.527380 AGAGAGGAGGACGCGGATC 60.527 63.158 12.47 4.85 0.00 3.36
616 622 1.826054 CAGAGAGGAGGACGCGGAT 60.826 63.158 12.47 0.00 0.00 4.18
617 623 2.438614 CAGAGAGGAGGACGCGGA 60.439 66.667 12.47 0.00 0.00 5.54
618 624 3.522731 CCAGAGAGGAGGACGCGG 61.523 72.222 12.47 0.00 41.22 6.46
620 626 3.844090 GCCCAGAGAGGAGGACGC 61.844 72.222 0.00 0.00 41.22 5.19
621 627 3.522731 CGCCCAGAGAGGAGGACG 61.523 72.222 0.00 0.00 41.22 4.79
625 631 4.504916 CACGCGCCCAGAGAGGAG 62.505 72.222 5.73 0.00 41.22 3.69
629 635 1.529152 TAAGAACACGCGCCCAGAGA 61.529 55.000 5.73 0.00 0.00 3.10
630 636 1.078759 CTAAGAACACGCGCCCAGAG 61.079 60.000 5.73 0.00 0.00 3.35
631 637 1.080093 CTAAGAACACGCGCCCAGA 60.080 57.895 5.73 0.00 0.00 3.86
633 639 2.740826 GCTAAGAACACGCGCCCA 60.741 61.111 5.73 0.00 0.00 5.36
634 640 3.849953 CGCTAAGAACACGCGCCC 61.850 66.667 5.73 0.00 40.42 6.13
639 645 2.333389 AGAGACACGCTAAGAACACG 57.667 50.000 0.00 0.00 0.00 4.49
640 646 4.149046 CAGAAAGAGACACGCTAAGAACAC 59.851 45.833 0.00 0.00 0.00 3.32
641 647 4.202121 ACAGAAAGAGACACGCTAAGAACA 60.202 41.667 0.00 0.00 0.00 3.18
642 648 4.299978 ACAGAAAGAGACACGCTAAGAAC 58.700 43.478 0.00 0.00 0.00 3.01
643 649 4.585955 ACAGAAAGAGACACGCTAAGAA 57.414 40.909 0.00 0.00 0.00 2.52
645 651 8.635877 AATATTACAGAAAGAGACACGCTAAG 57.364 34.615 0.00 0.00 0.00 2.18
646 652 8.997621 AAATATTACAGAAAGAGACACGCTAA 57.002 30.769 0.00 0.00 0.00 3.09
647 653 8.997621 AAAATATTACAGAAAGAGACACGCTA 57.002 30.769 0.00 0.00 0.00 4.26
648 654 7.819900 AGAAAATATTACAGAAAGAGACACGCT 59.180 33.333 0.00 0.00 0.00 5.07
649 655 7.900352 CAGAAAATATTACAGAAAGAGACACGC 59.100 37.037 0.00 0.00 0.00 5.34
651 657 8.721478 TGCAGAAAATATTACAGAAAGAGACAC 58.279 33.333 0.00 0.00 0.00 3.67
652 658 8.846943 TGCAGAAAATATTACAGAAAGAGACA 57.153 30.769 0.00 0.00 0.00 3.41
663 669 9.716507 ACACGTGATATTTGCAGAAAATATTAC 57.283 29.630 25.01 14.91 46.77 1.89
665 671 9.638239 AAACACGTGATATTTGCAGAAAATATT 57.362 25.926 25.01 0.00 46.77 1.28
668 674 7.945033 AAAACACGTGATATTTGCAGAAAAT 57.055 28.000 25.01 0.00 41.47 1.82
669 675 8.346300 TCTAAAACACGTGATATTTGCAGAAAA 58.654 29.630 25.01 3.13 0.00 2.29
670 676 7.866729 TCTAAAACACGTGATATTTGCAGAAA 58.133 30.769 25.01 3.76 0.00 2.52
671 677 7.428282 TCTAAAACACGTGATATTTGCAGAA 57.572 32.000 25.01 4.40 0.00 3.02
673 679 8.500837 TTTTCTAAAACACGTGATATTTGCAG 57.499 30.769 25.01 14.02 0.00 4.41
675 681 9.726034 CAATTTTCTAAAACACGTGATATTTGC 57.274 29.630 25.01 0.00 0.00 3.68
680 686 9.872757 GAAGACAATTTTCTAAAACACGTGATA 57.127 29.630 25.01 11.05 0.00 2.15
682 688 6.902948 CGAAGACAATTTTCTAAAACACGTGA 59.097 34.615 25.01 0.00 0.00 4.35
684 690 6.196571 CCGAAGACAATTTTCTAAAACACGT 58.803 36.000 0.00 0.00 0.00 4.49
685 691 5.115021 GCCGAAGACAATTTTCTAAAACACG 59.885 40.000 0.00 0.00 0.00 4.49
687 693 6.137794 TGCCGAAGACAATTTTCTAAAACA 57.862 33.333 0.00 0.00 0.00 2.83
688 694 6.474102 TGTTGCCGAAGACAATTTTCTAAAAC 59.526 34.615 0.00 0.00 0.00 2.43
689 695 6.565234 TGTTGCCGAAGACAATTTTCTAAAA 58.435 32.000 0.00 0.00 0.00 1.52
690 696 6.137794 TGTTGCCGAAGACAATTTTCTAAA 57.862 33.333 0.00 0.00 0.00 1.85
691 697 5.759506 TGTTGCCGAAGACAATTTTCTAA 57.240 34.783 0.00 0.00 0.00 2.10
694 700 4.359706 AGTTGTTGCCGAAGACAATTTTC 58.640 39.130 0.00 0.00 37.98 2.29
695 701 4.385358 AGTTGTTGCCGAAGACAATTTT 57.615 36.364 0.00 0.00 37.98 1.82
696 702 4.385358 AAGTTGTTGCCGAAGACAATTT 57.615 36.364 0.00 0.00 37.98 1.82
698 704 5.508200 TTTAAGTTGTTGCCGAAGACAAT 57.492 34.783 0.00 0.00 37.98 2.71
699 705 4.966965 TTTAAGTTGTTGCCGAAGACAA 57.033 36.364 0.00 0.00 33.67 3.18
700 706 4.664188 GTTTTAAGTTGTTGCCGAAGACA 58.336 39.130 0.00 0.00 0.00 3.41
701 707 3.722289 CGTTTTAAGTTGTTGCCGAAGAC 59.278 43.478 0.00 0.00 0.00 3.01
702 708 3.374678 ACGTTTTAAGTTGTTGCCGAAGA 59.625 39.130 0.00 0.00 0.00 2.87
703 709 3.687200 ACGTTTTAAGTTGTTGCCGAAG 58.313 40.909 0.00 0.00 0.00 3.79
705 711 2.676839 TGACGTTTTAAGTTGTTGCCGA 59.323 40.909 0.00 0.00 0.00 5.54
707 713 5.543716 GTTTTGACGTTTTAAGTTGTTGCC 58.456 37.500 0.00 0.00 0.00 4.52
708 714 5.164167 ACGTTTTGACGTTTTAAGTTGTTGC 60.164 36.000 0.00 0.00 44.63 4.17
710 716 5.342791 CCACGTTTTGACGTTTTAAGTTGTT 59.657 36.000 1.37 0.00 44.63 2.83
712 718 4.259095 GCCACGTTTTGACGTTTTAAGTTG 60.259 41.667 1.37 0.00 44.63 3.16
713 719 3.853103 GCCACGTTTTGACGTTTTAAGTT 59.147 39.130 1.37 0.00 44.63 2.66
714 720 3.428163 GCCACGTTTTGACGTTTTAAGT 58.572 40.909 1.37 0.00 44.63 2.24
716 722 2.163010 TGGCCACGTTTTGACGTTTTAA 59.837 40.909 0.00 0.00 44.63 1.52
717 723 1.741706 TGGCCACGTTTTGACGTTTTA 59.258 42.857 0.00 0.00 44.63 1.52
718 724 0.526662 TGGCCACGTTTTGACGTTTT 59.473 45.000 0.00 0.00 44.63 2.43
720 726 1.430228 GTGGCCACGTTTTGACGTT 59.570 52.632 22.49 0.00 44.63 3.99
722 728 2.330041 GGTGGCCACGTTTTGACG 59.670 61.111 29.08 0.00 39.31 4.35
723 729 1.065109 GTGGTGGCCACGTTTTGAC 59.935 57.895 29.08 14.05 44.95 3.18
724 730 3.515611 GTGGTGGCCACGTTTTGA 58.484 55.556 29.08 6.05 44.95 2.69
732 738 3.705934 TTGACGCTTGTGGTGGCCA 62.706 57.895 0.00 0.00 31.13 5.36
734 740 0.869880 GTTTTGACGCTTGTGGTGGC 60.870 55.000 0.00 0.00 0.00 5.01
736 742 2.853457 CGTTTTGACGCTTGTGGTG 58.147 52.632 0.00 0.00 0.00 4.17
745 751 0.386731 GAATGGTGGGCGTTTTGACG 60.387 55.000 0.00 0.00 0.00 4.35
746 752 0.671251 TGAATGGTGGGCGTTTTGAC 59.329 50.000 0.00 0.00 0.00 3.18
747 753 1.067821 GTTGAATGGTGGGCGTTTTGA 59.932 47.619 0.00 0.00 0.00 2.69
748 754 1.496934 GTTGAATGGTGGGCGTTTTG 58.503 50.000 0.00 0.00 0.00 2.44
749 755 0.391228 GGTTGAATGGTGGGCGTTTT 59.609 50.000 0.00 0.00 0.00 2.43
750 756 1.801309 CGGTTGAATGGTGGGCGTTT 61.801 55.000 0.00 0.00 0.00 3.60
751 757 2.265182 CGGTTGAATGGTGGGCGTT 61.265 57.895 0.00 0.00 0.00 4.84
753 759 2.671619 ACGGTTGAATGGTGGGCG 60.672 61.111 0.00 0.00 0.00 6.13
754 760 2.686816 CGACGGTTGAATGGTGGGC 61.687 63.158 0.00 0.00 0.00 5.36
755 761 1.302192 ACGACGGTTGAATGGTGGG 60.302 57.895 1.53 0.00 0.00 4.61
756 762 0.882927 ACACGACGGTTGAATGGTGG 60.883 55.000 1.53 0.00 0.00 4.61
757 763 0.511221 GACACGACGGTTGAATGGTG 59.489 55.000 1.53 0.00 0.00 4.17
759 765 1.779061 CGACACGACGGTTGAATGG 59.221 57.895 1.53 0.00 0.00 3.16
762 768 2.659244 GGCGACACGACGGTTGAA 60.659 61.111 1.53 0.00 0.00 2.69
763 769 3.902086 TGGCGACACGACGGTTGA 61.902 61.111 1.53 0.00 37.93 3.18
778 2899 8.649841 CAAACAATTGTTATTAGCTTGTGATGG 58.350 33.333 23.53 0.00 37.25 3.51
780 2901 8.584157 TCCAAACAATTGTTATTAGCTTGTGAT 58.416 29.630 23.53 0.99 37.25 3.06
791 2912 7.539034 AAAGGTAGCTCCAAACAATTGTTAT 57.461 32.000 23.53 11.41 37.25 1.89
806 2927 1.217244 CCACGGCGTAAAGGTAGCT 59.783 57.895 14.22 0.00 0.00 3.32
811 2932 1.669760 TGCTTCCACGGCGTAAAGG 60.670 57.895 25.91 18.88 0.00 3.11
817 2938 3.726517 CCTTGTGCTTCCACGGCG 61.727 66.667 4.80 4.80 45.04 6.46
858 2983 1.599071 GCTTCGCATCGATGATGGAAA 59.401 47.619 29.20 12.58 40.10 3.13
862 2987 0.110778 GCAGCTTCGCATCGATGATG 60.111 55.000 29.20 19.12 45.45 3.07
897 3022 0.039437 TCCTCGTGCGTGTTTCTCTC 60.039 55.000 0.00 0.00 0.00 3.20
900 3025 1.660575 CGTCCTCGTGCGTGTTTCT 60.661 57.895 0.00 0.00 0.00 2.52
950 3079 6.238786 GGGATGTATATGTGTATCTAGCTCCG 60.239 46.154 0.00 0.00 0.00 4.63
951 3080 6.238786 CGGGATGTATATGTGTATCTAGCTCC 60.239 46.154 0.00 0.00 0.00 4.70
955 3084 5.505819 CGCCGGGATGTATATGTGTATCTAG 60.506 48.000 2.18 0.00 0.00 2.43
956 3085 4.337274 CGCCGGGATGTATATGTGTATCTA 59.663 45.833 2.18 0.00 0.00 1.98
957 3086 3.130516 CGCCGGGATGTATATGTGTATCT 59.869 47.826 2.18 0.00 0.00 1.98
958 3087 3.129813 TCGCCGGGATGTATATGTGTATC 59.870 47.826 2.18 0.00 0.00 2.24
960 3089 2.516906 TCGCCGGGATGTATATGTGTA 58.483 47.619 2.18 0.00 0.00 2.90
962 3091 2.448926 TTCGCCGGGATGTATATGTG 57.551 50.000 2.18 0.00 0.00 3.21
966 3095 5.682990 GCCTAATATTTCGCCGGGATGTATA 60.683 44.000 2.18 0.00 0.00 1.47
1120 3255 0.754957 AGGTCCTCCTCGATGAGCTG 60.755 60.000 11.83 0.55 40.58 4.24
1250 3385 2.762234 CCGGAGAAGACCTCGTCGG 61.762 68.421 0.00 0.00 42.89 4.79
1332 3470 2.772691 CGCCTGTACCTCCTCGTCC 61.773 68.421 0.00 0.00 0.00 4.79
1345 3486 3.788766 GCGGTTGCTGTACGCCTG 61.789 66.667 7.13 0.63 46.92 4.85
1377 3518 5.030936 GTGAACAGTGAAAACTGAAAGCTC 58.969 41.667 12.57 2.55 39.99 4.09
1379 3520 4.986622 AGTGAACAGTGAAAACTGAAAGC 58.013 39.130 12.57 1.27 39.99 3.51
1393 3540 2.752354 AGGAGAGTCATCGAGTGAACAG 59.248 50.000 0.00 0.00 38.90 3.16
1395 3542 3.690139 TGTAGGAGAGTCATCGAGTGAAC 59.310 47.826 0.00 0.00 38.90 3.18
1421 3568 1.579964 CGGCTTCTTGCACTGCATGA 61.580 55.000 14.07 14.07 45.15 3.07
1440 3616 2.562912 CACAGCGCCATCCACAAC 59.437 61.111 2.29 0.00 0.00 3.32
1796 3975 2.131972 CAGTACGCTACTTGTGTGCAA 58.868 47.619 0.00 0.00 42.84 4.08
1812 3991 2.048597 CGGCAGCGTTGACCAGTA 60.049 61.111 2.38 0.00 0.00 2.74
1813 3992 2.933878 TTTCGGCAGCGTTGACCAGT 62.934 55.000 2.38 0.00 0.00 4.00
1814 3993 1.577328 ATTTCGGCAGCGTTGACCAG 61.577 55.000 2.38 1.54 0.00 4.00
1815 3994 1.573829 GATTTCGGCAGCGTTGACCA 61.574 55.000 2.38 0.00 0.00 4.02
1816 3995 1.134694 GATTTCGGCAGCGTTGACC 59.865 57.895 2.38 2.94 0.00 4.02
1817 3996 0.179215 CTGATTTCGGCAGCGTTGAC 60.179 55.000 2.38 0.00 0.00 3.18
1818 3997 1.298157 CCTGATTTCGGCAGCGTTGA 61.298 55.000 2.38 0.00 32.06 3.18
1819 3998 1.135315 CCTGATTTCGGCAGCGTTG 59.865 57.895 0.00 0.00 32.06 4.10
1820 3999 2.690778 GCCTGATTTCGGCAGCGTT 61.691 57.895 8.05 0.00 46.77 4.84
1821 4000 3.127533 GCCTGATTTCGGCAGCGT 61.128 61.111 8.05 0.00 46.77 5.07
1824 4003 9.886657 ATGTATACATAGGCCTGATTTCGGCAG 62.887 44.444 17.99 0.00 41.09 4.85
1825 4004 8.209703 ATGTATACATAGGCCTGATTTCGGCA 62.210 42.308 17.99 6.11 41.09 5.69
1826 4005 2.543777 TACATAGGCCTGATTTCGGC 57.456 50.000 17.99 0.00 46.83 5.54
1827 4006 5.147330 TGTATACATAGGCCTGATTTCGG 57.853 43.478 17.99 0.00 0.00 4.30
1828 4007 6.166279 ACATGTATACATAGGCCTGATTTCG 58.834 40.000 17.99 4.07 34.26 3.46
1829 4008 6.311445 CGACATGTATACATAGGCCTGATTTC 59.689 42.308 17.99 0.30 34.26 2.17
1830 4009 6.014584 TCGACATGTATACATAGGCCTGATTT 60.015 38.462 17.99 0.00 34.26 2.17
1831 4010 5.480422 TCGACATGTATACATAGGCCTGATT 59.520 40.000 17.99 0.58 34.26 2.57
1832 4011 5.016831 TCGACATGTATACATAGGCCTGAT 58.983 41.667 17.99 6.01 34.26 2.90
1833 4012 4.403734 TCGACATGTATACATAGGCCTGA 58.596 43.478 17.99 7.88 34.26 3.86
1834 4013 4.783764 TCGACATGTATACATAGGCCTG 57.216 45.455 17.99 8.97 34.26 4.85
1835 4014 4.382040 GCATCGACATGTATACATAGGCCT 60.382 45.833 17.86 11.78 34.26 5.19
1836 4015 3.865745 GCATCGACATGTATACATAGGCC 59.134 47.826 17.86 0.00 34.26 5.19
1837 4016 4.494484 TGCATCGACATGTATACATAGGC 58.506 43.478 17.86 15.34 34.26 3.93
1838 4017 7.596621 GGATATGCATCGACATGTATACATAGG 59.403 40.741 17.86 9.53 39.55 2.57
1839 4018 7.324616 CGGATATGCATCGACATGTATACATAG 59.675 40.741 17.86 14.06 39.55 2.23
1840 4019 7.012894 TCGGATATGCATCGACATGTATACATA 59.987 37.037 17.86 3.31 39.55 2.29
1841 4020 5.979517 CGGATATGCATCGACATGTATACAT 59.020 40.000 12.75 12.75 39.55 2.29
1842 4021 5.124776 TCGGATATGCATCGACATGTATACA 59.875 40.000 8.27 8.27 39.55 2.29
1843 4022 5.578776 TCGGATATGCATCGACATGTATAC 58.421 41.667 0.19 0.00 39.55 1.47
1844 4023 5.828299 TCGGATATGCATCGACATGTATA 57.172 39.130 0.19 0.00 40.60 1.47
1845 4024 4.718940 TCGGATATGCATCGACATGTAT 57.281 40.909 0.19 0.00 38.71 2.29
1846 4025 4.082245 ACATCGGATATGCATCGACATGTA 60.082 41.667 10.73 0.00 29.90 2.29
1847 4026 3.256558 CATCGGATATGCATCGACATGT 58.743 45.455 10.73 0.00 31.86 3.21
1848 4027 3.256558 ACATCGGATATGCATCGACATG 58.743 45.455 10.73 9.07 31.33 3.21
1849 4028 3.599730 ACATCGGATATGCATCGACAT 57.400 42.857 10.73 0.00 31.33 3.06
1850 4029 3.005791 AGAACATCGGATATGCATCGACA 59.994 43.478 10.73 0.00 31.33 4.35
1851 4030 3.579709 AGAACATCGGATATGCATCGAC 58.420 45.455 10.73 0.76 31.33 4.20
1852 4031 3.942130 AGAACATCGGATATGCATCGA 57.058 42.857 0.19 6.99 31.33 3.59
1853 4032 3.124128 CCAAGAACATCGGATATGCATCG 59.876 47.826 0.19 0.12 31.33 3.84
1854 4033 4.318332 TCCAAGAACATCGGATATGCATC 58.682 43.478 0.19 0.00 0.00 3.91
1855 4034 4.356405 TCCAAGAACATCGGATATGCAT 57.644 40.909 3.79 3.79 0.00 3.96
1856 4035 3.836365 TCCAAGAACATCGGATATGCA 57.164 42.857 0.00 0.00 0.00 3.96
1857 4036 6.801539 TTATTCCAAGAACATCGGATATGC 57.198 37.500 0.00 0.00 0.00 3.14
1858 4037 9.669353 CTTTTTATTCCAAGAACATCGGATATG 57.331 33.333 0.00 0.00 0.00 1.78
1859 4038 9.627123 TCTTTTTATTCCAAGAACATCGGATAT 57.373 29.630 0.00 0.00 0.00 1.63
1860 4039 9.456147 TTCTTTTTATTCCAAGAACATCGGATA 57.544 29.630 0.00 0.00 34.71 2.59
1861 4040 7.938140 TCTTTTTATTCCAAGAACATCGGAT 57.062 32.000 0.00 0.00 0.00 4.18
1862 4041 7.447238 ACTTCTTTTTATTCCAAGAACATCGGA 59.553 33.333 0.00 0.00 34.71 4.55
1863 4042 7.538678 CACTTCTTTTTATTCCAAGAACATCGG 59.461 37.037 0.00 0.00 34.71 4.18
1864 4043 8.289618 TCACTTCTTTTTATTCCAAGAACATCG 58.710 33.333 0.00 0.00 34.71 3.84
1865 4044 9.965824 TTCACTTCTTTTTATTCCAAGAACATC 57.034 29.630 0.00 0.00 34.71 3.06
1870 4049 9.801873 CACTTTTCACTTCTTTTTATTCCAAGA 57.198 29.630 0.00 0.00 0.00 3.02
1871 4050 8.542953 GCACTTTTCACTTCTTTTTATTCCAAG 58.457 33.333 0.00 0.00 0.00 3.61
1872 4051 7.221838 CGCACTTTTCACTTCTTTTTATTCCAA 59.778 33.333 0.00 0.00 0.00 3.53
1873 4052 6.695278 CGCACTTTTCACTTCTTTTTATTCCA 59.305 34.615 0.00 0.00 0.00 3.53
1874 4053 6.695713 ACGCACTTTTCACTTCTTTTTATTCC 59.304 34.615 0.00 0.00 0.00 3.01
1875 4054 7.096599 GGACGCACTTTTCACTTCTTTTTATTC 60.097 37.037 0.00 0.00 0.00 1.75
1876 4055 6.695713 GGACGCACTTTTCACTTCTTTTTATT 59.304 34.615 0.00 0.00 0.00 1.40
1877 4056 6.206498 GGACGCACTTTTCACTTCTTTTTAT 58.794 36.000 0.00 0.00 0.00 1.40
1878 4057 5.575019 GGACGCACTTTTCACTTCTTTTTA 58.425 37.500 0.00 0.00 0.00 1.52
1879 4058 4.421058 GGACGCACTTTTCACTTCTTTTT 58.579 39.130 0.00 0.00 0.00 1.94
1880 4059 3.486875 CGGACGCACTTTTCACTTCTTTT 60.487 43.478 0.00 0.00 0.00 2.27
1881 4060 2.031683 CGGACGCACTTTTCACTTCTTT 59.968 45.455 0.00 0.00 0.00 2.52
1882 4061 1.597663 CGGACGCACTTTTCACTTCTT 59.402 47.619 0.00 0.00 0.00 2.52
1883 4062 1.217882 CGGACGCACTTTTCACTTCT 58.782 50.000 0.00 0.00 0.00 2.85
1884 4063 0.384353 GCGGACGCACTTTTCACTTC 60.384 55.000 12.31 0.00 41.49 3.01
1885 4064 1.647084 GCGGACGCACTTTTCACTT 59.353 52.632 12.31 0.00 41.49 3.16
1886 4065 2.251642 GGCGGACGCACTTTTCACT 61.252 57.895 18.95 0.00 44.11 3.41
1887 4066 2.251371 GGCGGACGCACTTTTCAC 59.749 61.111 18.95 0.00 44.11 3.18
1888 4067 3.342627 CGGCGGACGCACTTTTCA 61.343 61.111 18.95 0.00 44.11 2.69
1898 4077 2.973180 GAACATAGGAGGCGGCGGAC 62.973 65.000 9.78 0.00 0.00 4.79
1899 4078 2.762459 AACATAGGAGGCGGCGGA 60.762 61.111 9.78 0.00 0.00 5.54
1900 4079 2.280186 GAACATAGGAGGCGGCGG 60.280 66.667 9.78 0.00 0.00 6.13
1901 4080 1.069765 ATGAACATAGGAGGCGGCG 59.930 57.895 0.51 0.51 0.00 6.46
1902 4081 1.510480 GCATGAACATAGGAGGCGGC 61.510 60.000 0.00 0.00 0.00 6.53
1903 4082 0.107456 AGCATGAACATAGGAGGCGG 59.893 55.000 0.00 0.00 0.00 6.13
1904 4083 1.869767 GAAGCATGAACATAGGAGGCG 59.130 52.381 0.00 0.00 0.00 5.52
1905 4084 3.205784 AGAAGCATGAACATAGGAGGC 57.794 47.619 0.00 0.00 0.00 4.70
1906 4085 5.936956 GGATAAGAAGCATGAACATAGGAGG 59.063 44.000 0.00 0.00 0.00 4.30
1907 4086 6.426328 GTGGATAAGAAGCATGAACATAGGAG 59.574 42.308 0.00 0.00 0.00 3.69
1908 4087 6.100279 AGTGGATAAGAAGCATGAACATAGGA 59.900 38.462 0.00 0.00 0.00 2.94
1909 4088 6.294473 AGTGGATAAGAAGCATGAACATAGG 58.706 40.000 0.00 0.00 0.00 2.57
1910 4089 7.215789 AGAGTGGATAAGAAGCATGAACATAG 58.784 38.462 0.00 0.00 0.00 2.23
1911 4090 7.129457 AGAGTGGATAAGAAGCATGAACATA 57.871 36.000 0.00 0.00 0.00 2.29
1912 4091 5.999044 AGAGTGGATAAGAAGCATGAACAT 58.001 37.500 0.00 0.00 0.00 2.71
1913 4092 5.046376 TGAGAGTGGATAAGAAGCATGAACA 60.046 40.000 0.00 0.00 0.00 3.18
1914 4093 5.293079 GTGAGAGTGGATAAGAAGCATGAAC 59.707 44.000 0.00 0.00 0.00 3.18
1915 4094 5.423015 GTGAGAGTGGATAAGAAGCATGAA 58.577 41.667 0.00 0.00 0.00 2.57
1916 4095 4.141846 GGTGAGAGTGGATAAGAAGCATGA 60.142 45.833 0.00 0.00 0.00 3.07
1917 4096 4.125703 GGTGAGAGTGGATAAGAAGCATG 58.874 47.826 0.00 0.00 0.00 4.06
1918 4097 3.135530 GGGTGAGAGTGGATAAGAAGCAT 59.864 47.826 0.00 0.00 0.00 3.79
1919 4098 2.501723 GGGTGAGAGTGGATAAGAAGCA 59.498 50.000 0.00 0.00 0.00 3.91
1920 4099 2.482142 CGGGTGAGAGTGGATAAGAAGC 60.482 54.545 0.00 0.00 0.00 3.86
1921 4100 2.761208 ACGGGTGAGAGTGGATAAGAAG 59.239 50.000 0.00 0.00 0.00 2.85
1922 4101 2.758979 GACGGGTGAGAGTGGATAAGAA 59.241 50.000 0.00 0.00 0.00 2.52
1923 4102 2.376109 GACGGGTGAGAGTGGATAAGA 58.624 52.381 0.00 0.00 0.00 2.10
1924 4103 1.409427 GGACGGGTGAGAGTGGATAAG 59.591 57.143 0.00 0.00 0.00 1.73
1925 4104 1.272816 TGGACGGGTGAGAGTGGATAA 60.273 52.381 0.00 0.00 0.00 1.75
1926 4105 0.333652 TGGACGGGTGAGAGTGGATA 59.666 55.000 0.00 0.00 0.00 2.59
1927 4106 0.544357 TTGGACGGGTGAGAGTGGAT 60.544 55.000 0.00 0.00 0.00 3.41
1928 4107 1.152419 TTGGACGGGTGAGAGTGGA 60.152 57.895 0.00 0.00 0.00 4.02
1929 4108 1.293498 CTTGGACGGGTGAGAGTGG 59.707 63.158 0.00 0.00 0.00 4.00
1930 4109 0.393077 AACTTGGACGGGTGAGAGTG 59.607 55.000 0.00 0.00 0.00 3.51
1931 4110 0.393077 CAACTTGGACGGGTGAGAGT 59.607 55.000 0.00 0.00 0.00 3.24
1932 4111 0.320771 CCAACTTGGACGGGTGAGAG 60.321 60.000 0.92 0.00 40.96 3.20
1933 4112 0.761323 TCCAACTTGGACGGGTGAGA 60.761 55.000 6.39 0.00 42.67 3.27
1934 4113 1.752198 TCCAACTTGGACGGGTGAG 59.248 57.895 6.39 0.00 42.67 3.51
1935 4114 3.973458 TCCAACTTGGACGGGTGA 58.027 55.556 6.39 0.00 42.67 4.02
1943 4122 5.069119 GGCCCTATTTAGAAATCCAACTTGG 59.931 44.000 0.74 0.74 39.43 3.61
1944 4123 5.221048 CGGCCCTATTTAGAAATCCAACTTG 60.221 44.000 0.00 0.00 0.00 3.16
1945 4124 4.887655 CGGCCCTATTTAGAAATCCAACTT 59.112 41.667 0.00 0.00 0.00 2.66
1946 4125 4.461198 CGGCCCTATTTAGAAATCCAACT 58.539 43.478 0.00 0.00 0.00 3.16
1947 4126 3.568430 CCGGCCCTATTTAGAAATCCAAC 59.432 47.826 0.00 0.00 0.00 3.77
1948 4127 3.460340 TCCGGCCCTATTTAGAAATCCAA 59.540 43.478 0.00 0.00 0.00 3.53
1949 4128 3.050089 TCCGGCCCTATTTAGAAATCCA 58.950 45.455 0.00 0.00 0.00 3.41
1950 4129 3.409570 GTCCGGCCCTATTTAGAAATCC 58.590 50.000 0.00 0.00 0.00 3.01
1951 4130 3.409570 GGTCCGGCCCTATTTAGAAATC 58.590 50.000 0.00 0.00 0.00 2.17
1952 4131 2.224450 CGGTCCGGCCCTATTTAGAAAT 60.224 50.000 2.34 0.00 0.00 2.17
1953 4132 1.139455 CGGTCCGGCCCTATTTAGAAA 59.861 52.381 2.34 0.00 0.00 2.52
1954 4133 0.754472 CGGTCCGGCCCTATTTAGAA 59.246 55.000 2.34 0.00 0.00 2.10
1955 4134 1.117142 CCGGTCCGGCCCTATTTAGA 61.117 60.000 19.48 0.00 41.17 2.10
1956 4135 1.370064 CCGGTCCGGCCCTATTTAG 59.630 63.158 19.48 0.00 41.17 1.85
1957 4136 3.553467 CCGGTCCGGCCCTATTTA 58.447 61.111 19.48 0.00 41.17 1.40
1967 4146 1.153628 GAACATCCAGACCGGTCCG 60.154 63.158 30.82 21.26 35.57 4.79
1968 4147 1.153628 CGAACATCCAGACCGGTCC 60.154 63.158 30.82 13.26 35.57 4.46
1969 4148 0.245539 TTCGAACATCCAGACCGGTC 59.754 55.000 27.67 27.67 35.57 4.79
1970 4149 0.902531 ATTCGAACATCCAGACCGGT 59.097 50.000 6.92 6.92 35.57 5.28
1971 4150 1.571919 GATTCGAACATCCAGACCGG 58.428 55.000 0.00 0.00 0.00 5.28
1972 4151 1.571919 GGATTCGAACATCCAGACCG 58.428 55.000 12.06 0.00 42.35 4.79
1973 4152 1.209504 TGGGATTCGAACATCCAGACC 59.790 52.381 17.42 3.28 44.36 3.85
1974 4153 2.691409 TGGGATTCGAACATCCAGAC 57.309 50.000 17.42 3.58 44.36 3.51
1975 4154 4.223144 TCTATGGGATTCGAACATCCAGA 58.777 43.478 17.42 13.10 44.36 3.86
1976 4155 4.564041 CTCTATGGGATTCGAACATCCAG 58.436 47.826 17.42 8.24 44.36 3.86
1977 4156 3.244215 GCTCTATGGGATTCGAACATCCA 60.244 47.826 17.42 16.34 44.36 3.41
1978 4157 3.244215 TGCTCTATGGGATTCGAACATCC 60.244 47.826 8.99 8.99 42.09 3.51
1979 4158 3.993081 CTGCTCTATGGGATTCGAACATC 59.007 47.826 0.00 0.00 0.00 3.06
1980 4159 3.805108 GCTGCTCTATGGGATTCGAACAT 60.805 47.826 0.00 2.17 0.00 2.71
1981 4160 2.483714 GCTGCTCTATGGGATTCGAACA 60.484 50.000 0.00 0.00 0.00 3.18
1982 4161 2.139118 GCTGCTCTATGGGATTCGAAC 58.861 52.381 0.00 0.00 0.00 3.95
1983 4162 1.070758 GGCTGCTCTATGGGATTCGAA 59.929 52.381 0.00 0.00 0.00 3.71
1984 4163 0.681733 GGCTGCTCTATGGGATTCGA 59.318 55.000 0.00 0.00 0.00 3.71
1985 4164 0.321122 GGGCTGCTCTATGGGATTCG 60.321 60.000 0.00 0.00 0.00 3.34
1986 4165 0.037447 GGGGCTGCTCTATGGGATTC 59.963 60.000 0.00 0.00 0.00 2.52
1987 4166 0.698886 TGGGGCTGCTCTATGGGATT 60.699 55.000 0.00 0.00 0.00 3.01
1988 4167 0.698886 TTGGGGCTGCTCTATGGGAT 60.699 55.000 0.00 0.00 0.00 3.85
1989 4168 0.918799 TTTGGGGCTGCTCTATGGGA 60.919 55.000 0.00 0.00 0.00 4.37
1990 4169 0.186873 ATTTGGGGCTGCTCTATGGG 59.813 55.000 0.00 0.00 0.00 4.00
1991 4170 1.613836 GATTTGGGGCTGCTCTATGG 58.386 55.000 0.00 0.00 0.00 2.74
1992 4171 1.202687 TCGATTTGGGGCTGCTCTATG 60.203 52.381 0.00 0.00 0.00 2.23
1993 4172 1.071385 CTCGATTTGGGGCTGCTCTAT 59.929 52.381 0.00 0.00 0.00 1.98
1994 4173 0.465705 CTCGATTTGGGGCTGCTCTA 59.534 55.000 0.00 0.00 0.00 2.43
1995 4174 1.222936 CTCGATTTGGGGCTGCTCT 59.777 57.895 0.00 0.00 0.00 4.09
1996 4175 1.821332 CCTCGATTTGGGGCTGCTC 60.821 63.158 0.00 0.00 0.00 4.26
1997 4176 2.262774 CTCCTCGATTTGGGGCTGCT 62.263 60.000 0.00 0.00 0.00 4.24
1998 4177 1.821332 CTCCTCGATTTGGGGCTGC 60.821 63.158 0.00 0.00 0.00 5.25
1999 4178 1.821332 GCTCCTCGATTTGGGGCTG 60.821 63.158 6.79 0.00 46.99 4.85
2000 4179 2.592308 GCTCCTCGATTTGGGGCT 59.408 61.111 6.79 0.00 46.99 5.19
2002 4181 0.105778 GAGAGCTCCTCGATTTGGGG 59.894 60.000 10.93 0.00 35.36 4.96
2003 4182 3.677002 GAGAGCTCCTCGATTTGGG 57.323 57.895 10.93 0.00 35.36 4.12
2017 4196 0.683973 ATTGCCATCCCTAGCGAGAG 59.316 55.000 0.00 0.00 0.00 3.20
2018 4197 0.394192 CATTGCCATCCCTAGCGAGA 59.606 55.000 0.00 0.00 0.00 4.04
2019 4198 0.604780 CCATTGCCATCCCTAGCGAG 60.605 60.000 0.00 0.00 0.00 5.03
2020 4199 1.451504 CCATTGCCATCCCTAGCGA 59.548 57.895 0.00 0.00 0.00 4.93
2021 4200 1.601759 CCCATTGCCATCCCTAGCG 60.602 63.158 0.00 0.00 0.00 4.26
2022 4201 0.771127 TACCCATTGCCATCCCTAGC 59.229 55.000 0.00 0.00 0.00 3.42
2082 4262 5.705609 AACATTTTGTCTCACGCCTTTAT 57.294 34.783 0.00 0.00 0.00 1.40
2086 4267 2.812011 GGTAACATTTTGTCTCACGCCT 59.188 45.455 0.00 0.00 0.00 5.52
2090 4271 4.082245 CCCATGGGTAACATTTTGTCTCAC 60.082 45.833 23.93 0.00 37.84 3.51
2143 4324 2.123982 CCGTACCCGCTCTACCCT 60.124 66.667 0.00 0.00 0.00 4.34
2235 4417 4.327898 TGACAAACTCACGACAAAGTGTAC 59.672 41.667 0.00 0.00 42.40 2.90
2294 4477 8.845227 ACTACACATCAAAACATCAACACATAA 58.155 29.630 0.00 0.00 0.00 1.90
2353 4536 7.328249 ACAACAACACATCTAAAACAACAACAG 59.672 33.333 0.00 0.00 0.00 3.16
2595 4800 0.912487 GTGGAGTCACCCCATACCCA 60.912 60.000 0.00 0.00 37.92 4.51
2608 4813 1.756665 GTTTGGGTACGGGTGGAGT 59.243 57.895 0.00 0.00 0.00 3.85
2649 4854 1.140407 GGACATTCGAACTCCGCGAG 61.140 60.000 8.23 5.77 39.14 5.03
2650 4855 1.153901 GGACATTCGAACTCCGCGA 60.154 57.895 8.23 0.00 38.37 5.87
2651 4856 2.505498 CGGACATTCGAACTCCGCG 61.505 63.158 25.24 0.00 40.52 6.46
2652 4857 3.384927 CGGACATTCGAACTCCGC 58.615 61.111 25.24 5.29 40.52 5.54
2654 4859 1.135199 TGTAGCGGACATTCGAACTCC 60.135 52.381 0.00 6.82 31.20 3.85
2655 4860 1.918609 GTGTAGCGGACATTCGAACTC 59.081 52.381 0.00 0.00 41.14 3.01
2656 4861 1.544691 AGTGTAGCGGACATTCGAACT 59.455 47.619 0.00 0.00 41.14 3.01
2657 4862 1.654105 CAGTGTAGCGGACATTCGAAC 59.346 52.381 0.00 0.00 41.14 3.95
2658 4863 1.403647 CCAGTGTAGCGGACATTCGAA 60.404 52.381 0.00 0.00 41.14 3.71
2659 4864 0.172578 CCAGTGTAGCGGACATTCGA 59.827 55.000 0.00 0.00 41.14 3.71
2660 4865 0.172578 TCCAGTGTAGCGGACATTCG 59.827 55.000 0.00 0.00 41.14 3.34
2666 4871 0.037734 TCAGAGTCCAGTGTAGCGGA 59.962 55.000 0.00 0.00 0.00 5.54
2667 4872 1.107114 ATCAGAGTCCAGTGTAGCGG 58.893 55.000 0.00 0.00 0.00 5.52
2668 4873 3.057876 GGATATCAGAGTCCAGTGTAGCG 60.058 52.174 4.83 0.00 34.57 4.26
2669 4874 3.257127 GGGATATCAGAGTCCAGTGTAGC 59.743 52.174 4.83 0.00 36.19 3.58
2670 4875 3.504134 CGGGATATCAGAGTCCAGTGTAG 59.496 52.174 4.83 0.00 36.19 2.74
2671 4876 3.137728 TCGGGATATCAGAGTCCAGTGTA 59.862 47.826 4.83 0.00 36.19 2.90
2672 4877 2.091830 TCGGGATATCAGAGTCCAGTGT 60.092 50.000 4.83 0.00 36.19 3.55
2673 4878 2.587522 TCGGGATATCAGAGTCCAGTG 58.412 52.381 4.83 0.00 36.19 3.66
2674 4879 2.959707 GTTCGGGATATCAGAGTCCAGT 59.040 50.000 4.83 0.00 36.19 4.00
2675 4880 2.297597 GGTTCGGGATATCAGAGTCCAG 59.702 54.545 4.83 3.46 36.19 3.86
2676 4881 2.317040 GGTTCGGGATATCAGAGTCCA 58.683 52.381 4.83 0.00 36.19 4.02
2677 4882 2.036089 GTGGTTCGGGATATCAGAGTCC 59.964 54.545 4.83 9.84 0.00 3.85
2678 4883 2.036089 GGTGGTTCGGGATATCAGAGTC 59.964 54.545 4.83 1.75 0.00 3.36
2679 4884 2.040178 GGTGGTTCGGGATATCAGAGT 58.960 52.381 4.83 0.00 0.00 3.24
2680 4885 1.344763 GGGTGGTTCGGGATATCAGAG 59.655 57.143 4.83 0.00 0.00 3.35
2681 4886 1.343580 TGGGTGGTTCGGGATATCAGA 60.344 52.381 4.83 0.44 0.00 3.27
2682 4887 1.070758 CTGGGTGGTTCGGGATATCAG 59.929 57.143 4.83 0.00 0.00 2.90
2683 4888 1.128200 CTGGGTGGTTCGGGATATCA 58.872 55.000 4.83 0.00 0.00 2.15
2684 4889 1.420430 TCTGGGTGGTTCGGGATATC 58.580 55.000 0.00 0.00 0.00 1.63
2685 4890 1.489230 GTTCTGGGTGGTTCGGGATAT 59.511 52.381 0.00 0.00 0.00 1.63
2686 4891 0.906775 GTTCTGGGTGGTTCGGGATA 59.093 55.000 0.00 0.00 0.00 2.59
2687 4892 1.683441 GTTCTGGGTGGTTCGGGAT 59.317 57.895 0.00 0.00 0.00 3.85
2688 4893 2.522367 GGTTCTGGGTGGTTCGGGA 61.522 63.158 0.00 0.00 0.00 5.14
2689 4894 2.033602 GGTTCTGGGTGGTTCGGG 59.966 66.667 0.00 0.00 0.00 5.14
2690 4895 2.033602 GGGTTCTGGGTGGTTCGG 59.966 66.667 0.00 0.00 0.00 4.30
2691 4896 2.033602 GGGGTTCTGGGTGGTTCG 59.966 66.667 0.00 0.00 0.00 3.95
2692 4897 0.114364 AATGGGGTTCTGGGTGGTTC 59.886 55.000 0.00 0.00 0.00 3.62
2693 4898 0.114364 GAATGGGGTTCTGGGTGGTT 59.886 55.000 0.00 0.00 33.89 3.67
2694 4899 1.071314 TGAATGGGGTTCTGGGTGGT 61.071 55.000 0.00 0.00 37.72 4.16
2695 4900 0.323725 CTGAATGGGGTTCTGGGTGG 60.324 60.000 0.00 0.00 37.72 4.61
2696 4901 0.698238 TCTGAATGGGGTTCTGGGTG 59.302 55.000 0.00 0.00 37.72 4.61
2697 4902 0.995024 CTCTGAATGGGGTTCTGGGT 59.005 55.000 0.00 0.00 37.72 4.51
2698 4903 0.394899 GCTCTGAATGGGGTTCTGGG 60.395 60.000 0.00 0.00 38.79 4.45
2699 4904 0.329261 TGCTCTGAATGGGGTTCTGG 59.671 55.000 0.00 0.00 37.72 3.86
2700 4905 2.022195 CATGCTCTGAATGGGGTTCTG 58.978 52.381 0.00 0.00 37.72 3.02
2701 4906 1.684248 GCATGCTCTGAATGGGGTTCT 60.684 52.381 11.37 0.00 37.72 3.01
2702 4907 0.743097 GCATGCTCTGAATGGGGTTC 59.257 55.000 11.37 0.00 37.35 3.62
2703 4908 1.033746 CGCATGCTCTGAATGGGGTT 61.034 55.000 17.13 0.00 35.08 4.11
2704 4909 1.452651 CGCATGCTCTGAATGGGGT 60.453 57.895 17.13 0.00 35.08 4.95
2705 4910 2.842256 GCGCATGCTCTGAATGGGG 61.842 63.158 17.13 0.00 38.16 4.96
2706 4911 1.452953 ATGCGCATGCTCTGAATGGG 61.453 55.000 24.69 0.00 43.34 4.00
2707 4912 0.384309 AATGCGCATGCTCTGAATGG 59.616 50.000 26.09 0.00 43.34 3.16
2708 4913 2.203800 AAATGCGCATGCTCTGAATG 57.796 45.000 26.09 0.00 43.34 2.67
2709 4914 2.164827 TGAAAATGCGCATGCTCTGAAT 59.835 40.909 26.09 1.63 43.34 2.57
2710 4915 1.540707 TGAAAATGCGCATGCTCTGAA 59.459 42.857 26.09 5.11 43.34 3.02
2711 4916 1.135603 GTGAAAATGCGCATGCTCTGA 60.136 47.619 26.09 5.82 43.34 3.27
2712 4917 1.265568 GTGAAAATGCGCATGCTCTG 58.734 50.000 26.09 0.81 43.34 3.35
2713 4918 0.883153 TGTGAAAATGCGCATGCTCT 59.117 45.000 26.09 4.77 43.34 4.09
2714 4919 1.700523 TTGTGAAAATGCGCATGCTC 58.299 45.000 26.09 22.32 43.34 4.26
2715 4920 2.094390 AGATTGTGAAAATGCGCATGCT 60.094 40.909 26.09 14.30 43.34 3.79
2716 4921 2.028763 CAGATTGTGAAAATGCGCATGC 59.971 45.455 26.09 16.73 43.20 4.06
2717 4922 2.028763 GCAGATTGTGAAAATGCGCATG 59.971 45.455 26.09 9.38 0.00 4.06
2718 4923 2.264813 GCAGATTGTGAAAATGCGCAT 58.735 42.857 19.28 19.28 0.00 4.73
2719 4924 1.669502 GGCAGATTGTGAAAATGCGCA 60.670 47.619 14.96 14.96 37.76 6.09
2720 4925 0.994263 GGCAGATTGTGAAAATGCGC 59.006 50.000 0.00 0.00 37.76 6.09
2721 4926 1.987770 GTGGCAGATTGTGAAAATGCG 59.012 47.619 0.00 0.00 37.76 4.73
2722 4927 3.308438 AGTGGCAGATTGTGAAAATGC 57.692 42.857 0.00 0.00 36.16 3.56
2723 4928 5.633830 AGTAGTGGCAGATTGTGAAAATG 57.366 39.130 0.00 0.00 0.00 2.32
2724 4929 5.183904 GGAAGTAGTGGCAGATTGTGAAAAT 59.816 40.000 0.00 0.00 0.00 1.82
2725 4930 4.518970 GGAAGTAGTGGCAGATTGTGAAAA 59.481 41.667 0.00 0.00 0.00 2.29
2726 4931 4.072131 GGAAGTAGTGGCAGATTGTGAAA 58.928 43.478 0.00 0.00 0.00 2.69
2727 4932 3.072330 TGGAAGTAGTGGCAGATTGTGAA 59.928 43.478 0.00 0.00 0.00 3.18
2728 4933 2.637382 TGGAAGTAGTGGCAGATTGTGA 59.363 45.455 0.00 0.00 0.00 3.58
2729 4934 2.744202 GTGGAAGTAGTGGCAGATTGTG 59.256 50.000 0.00 0.00 0.00 3.33
2730 4935 2.371841 TGTGGAAGTAGTGGCAGATTGT 59.628 45.455 0.00 0.00 0.00 2.71
2731 4936 2.744202 GTGTGGAAGTAGTGGCAGATTG 59.256 50.000 0.00 0.00 0.00 2.67
2732 4937 2.290323 GGTGTGGAAGTAGTGGCAGATT 60.290 50.000 0.00 0.00 0.00 2.40
2733 4938 1.279271 GGTGTGGAAGTAGTGGCAGAT 59.721 52.381 0.00 0.00 0.00 2.90
2734 4939 0.685097 GGTGTGGAAGTAGTGGCAGA 59.315 55.000 0.00 0.00 0.00 4.26
2735 4940 0.321653 GGGTGTGGAAGTAGTGGCAG 60.322 60.000 0.00 0.00 0.00 4.85
2736 4941 1.758592 GGGTGTGGAAGTAGTGGCA 59.241 57.895 0.00 0.00 0.00 4.92
2737 4942 1.375523 CGGGTGTGGAAGTAGTGGC 60.376 63.158 0.00 0.00 0.00 5.01
2738 4943 1.295423 CCGGGTGTGGAAGTAGTGG 59.705 63.158 0.00 0.00 0.00 4.00
2739 4944 1.375523 GCCGGGTGTGGAAGTAGTG 60.376 63.158 2.18 0.00 0.00 2.74
2740 4945 2.939261 CGCCGGGTGTGGAAGTAGT 61.939 63.158 2.18 0.00 0.00 2.73
2741 4946 2.125673 CGCCGGGTGTGGAAGTAG 60.126 66.667 2.18 0.00 0.00 2.57
2742 4947 2.601067 TCGCCGGGTGTGGAAGTA 60.601 61.111 2.18 0.00 0.00 2.24
2743 4948 4.003788 CTCGCCGGGTGTGGAAGT 62.004 66.667 2.18 0.00 0.00 3.01
2744 4949 3.019003 ATCTCGCCGGGTGTGGAAG 62.019 63.158 2.18 0.00 0.00 3.46
2745 4950 3.000819 ATCTCGCCGGGTGTGGAA 61.001 61.111 2.18 0.00 0.00 3.53
2746 4951 3.770040 CATCTCGCCGGGTGTGGA 61.770 66.667 2.18 7.84 0.00 4.02
2747 4952 4.082523 ACATCTCGCCGGGTGTGG 62.083 66.667 2.18 2.48 0.00 4.17
2748 4953 2.509336 GACATCTCGCCGGGTGTG 60.509 66.667 2.18 5.33 0.00 3.82
2749 4954 3.771160 GGACATCTCGCCGGGTGT 61.771 66.667 2.18 0.00 0.00 4.16
2750 4955 4.530857 GGGACATCTCGCCGGGTG 62.531 72.222 2.18 0.00 0.00 4.61
2756 4961 0.319125 GATCGAAGGGGACATCTCGC 60.319 60.000 0.00 0.00 31.66 5.03
2757 4962 0.039978 CGATCGAAGGGGACATCTCG 60.040 60.000 10.26 0.00 0.00 4.04
2758 4963 1.033574 ACGATCGAAGGGGACATCTC 58.966 55.000 24.34 0.00 0.00 2.75
2759 4964 0.747255 CACGATCGAAGGGGACATCT 59.253 55.000 24.34 0.00 0.00 2.90
2760 4965 0.744874 TCACGATCGAAGGGGACATC 59.255 55.000 24.34 0.00 0.00 3.06
2761 4966 1.137086 CTTCACGATCGAAGGGGACAT 59.863 52.381 24.34 0.00 39.01 3.06
2762 4967 0.530744 CTTCACGATCGAAGGGGACA 59.469 55.000 24.34 0.00 39.01 4.02
2763 4968 0.815734 TCTTCACGATCGAAGGGGAC 59.184 55.000 24.34 0.00 42.27 4.46
2764 4969 1.103803 CTCTTCACGATCGAAGGGGA 58.896 55.000 24.34 11.49 42.27 4.81
2765 4970 3.650409 CTCTTCACGATCGAAGGGG 57.350 57.895 24.34 5.98 42.27 4.79
2766 4971 0.103208 CCCTCTTCACGATCGAAGGG 59.897 60.000 24.34 22.06 42.25 3.95
2767 4972 0.528684 GCCCTCTTCACGATCGAAGG 60.529 60.000 24.34 17.73 42.27 3.46
2768 4973 0.867753 CGCCCTCTTCACGATCGAAG 60.868 60.000 24.34 15.86 43.17 3.79
2769 4974 1.138883 CGCCCTCTTCACGATCGAA 59.861 57.895 24.34 5.51 0.00 3.71
2770 4975 2.771639 CCGCCCTCTTCACGATCGA 61.772 63.158 24.34 0.00 0.00 3.59
2771 4976 2.278857 CCGCCCTCTTCACGATCG 60.279 66.667 14.88 14.88 0.00 3.69
2772 4977 2.107141 CCCGCCCTCTTCACGATC 59.893 66.667 0.00 0.00 0.00 3.69
2773 4978 3.470888 CCCCGCCCTCTTCACGAT 61.471 66.667 0.00 0.00 0.00 3.73
2775 4980 4.452733 GACCCCGCCCTCTTCACG 62.453 72.222 0.00 0.00 0.00 4.35
2776 4981 4.097361 GGACCCCGCCCTCTTCAC 62.097 72.222 0.00 0.00 0.00 3.18
2777 4982 4.332543 AGGACCCCGCCCTCTTCA 62.333 66.667 0.00 0.00 0.00 3.02
2778 4983 3.471806 GAGGACCCCGCCCTCTTC 61.472 72.222 0.00 0.00 45.18 2.87
2783 4988 4.828296 TAGACGAGGACCCCGCCC 62.828 72.222 0.00 0.00 0.00 6.13
2784 4989 3.217743 CTAGACGAGGACCCCGCC 61.218 72.222 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.