Multiple sequence alignment - TraesCS3D01G484900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G484900 chr3D 100.000 2561 0 0 1 2561 581835318 581832758 0.000000e+00 4730.0
1 TraesCS3D01G484900 chr3D 88.494 1295 96 26 313 1568 580712936 580714216 0.000000e+00 1517.0
2 TraesCS3D01G484900 chr3A 88.056 1348 80 32 795 2100 716258642 716259950 0.000000e+00 1522.0
3 TraesCS3D01G484900 chr3A 88.849 278 23 5 2286 2561 716260022 716260293 4.080000e-88 335.0
4 TraesCS3D01G484900 chr3A 92.896 183 11 2 445 627 716258279 716258459 5.430000e-67 265.0
5 TraesCS3D01G484900 chr3A 93.458 107 6 1 637 742 716258542 716258648 9.490000e-35 158.0
6 TraesCS3D01G484900 chr3B 89.301 1159 63 30 637 1749 777998079 777996936 0.000000e+00 1397.0
7 TraesCS3D01G484900 chr3B 90.074 1088 57 25 637 1687 776194721 776195794 0.000000e+00 1363.0
8 TraesCS3D01G484900 chr3B 82.566 608 39 32 1428 1996 779284682 779285261 8.290000e-130 473.0
9 TraesCS3D01G484900 chr3B 83.438 477 47 18 1844 2305 776195944 776196403 5.100000e-112 414.0
10 TraesCS3D01G484900 chr3B 88.444 225 21 4 2336 2556 776196401 776196624 1.510000e-67 267.0
11 TraesCS3D01G484900 chr3B 83.696 184 11 8 449 628 776194161 776194329 3.410000e-34 156.0
12 TraesCS3D01G484900 chr3B 89.474 114 9 3 505 617 777998265 777998154 9.550000e-30 141.0
13 TraesCS3D01G484900 chr1D 85.203 419 54 5 1126 1540 328798113 328797699 8.470000e-115 424.0
14 TraesCS3D01G484900 chr1B 84.487 419 57 5 1126 1540 442970848 442970434 8.530000e-110 407.0
15 TraesCS3D01G484900 chr1A 84.487 419 57 5 1126 1540 425681651 425681237 8.530000e-110 407.0
16 TraesCS3D01G484900 chr4D 92.308 65 4 1 1463 1526 3791484 3791548 9.760000e-15 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G484900 chr3D 581832758 581835318 2560 True 4730 4730 100.00000 1 2561 1 chr3D.!!$R1 2560
1 TraesCS3D01G484900 chr3D 580712936 580714216 1280 False 1517 1517 88.49400 313 1568 1 chr3D.!!$F1 1255
2 TraesCS3D01G484900 chr3A 716258279 716260293 2014 False 570 1522 90.81475 445 2561 4 chr3A.!!$F1 2116
3 TraesCS3D01G484900 chr3B 777996936 777998265 1329 True 769 1397 89.38750 505 1749 2 chr3B.!!$R1 1244
4 TraesCS3D01G484900 chr3B 776194161 776196624 2463 False 550 1363 86.41300 449 2556 4 chr3B.!!$F2 2107
5 TraesCS3D01G484900 chr3B 779284682 779285261 579 False 473 473 82.56600 1428 1996 1 chr3B.!!$F1 568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
133 134 0.035152 GCCACATCACAGACCCATGA 60.035 55.0 0.0 0.0 0.0 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1944 2478 1.866015 TCCAGACATCCCAATCGTCT 58.134 50.0 0.0 0.0 40.6 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.529325 ACCTAAGAAAATCAAACAAAAACTAGC 57.471 29.630 0.00 0.00 0.00 3.42
29 30 9.750125 CCTAAGAAAATCAAACAAAAACTAGCT 57.250 29.630 0.00 0.00 0.00 3.32
36 37 8.871686 AATCAAACAAAAACTAGCTACAAAGG 57.128 30.769 0.00 0.00 0.00 3.11
37 38 6.801575 TCAAACAAAAACTAGCTACAAAGGG 58.198 36.000 0.00 0.00 0.00 3.95
38 39 4.848562 ACAAAAACTAGCTACAAAGGGC 57.151 40.909 0.00 0.00 0.00 5.19
39 40 4.211920 ACAAAAACTAGCTACAAAGGGCA 58.788 39.130 0.00 0.00 0.00 5.36
40 41 4.278419 ACAAAAACTAGCTACAAAGGGCAG 59.722 41.667 0.00 0.00 0.00 4.85
41 42 3.790089 AAACTAGCTACAAAGGGCAGT 57.210 42.857 0.00 0.00 0.00 4.40
42 43 4.903045 AAACTAGCTACAAAGGGCAGTA 57.097 40.909 0.00 0.00 0.00 2.74
43 44 4.903045 AACTAGCTACAAAGGGCAGTAA 57.097 40.909 0.00 0.00 0.00 2.24
44 45 5.437191 AACTAGCTACAAAGGGCAGTAAT 57.563 39.130 0.00 0.00 0.00 1.89
45 46 5.437191 ACTAGCTACAAAGGGCAGTAATT 57.563 39.130 0.00 0.00 0.00 1.40
46 47 6.555463 ACTAGCTACAAAGGGCAGTAATTA 57.445 37.500 0.00 0.00 0.00 1.40
47 48 6.954232 ACTAGCTACAAAGGGCAGTAATTAA 58.046 36.000 0.00 0.00 0.00 1.40
48 49 7.048512 ACTAGCTACAAAGGGCAGTAATTAAG 58.951 38.462 0.00 0.00 0.00 1.85
49 50 4.640647 AGCTACAAAGGGCAGTAATTAAGC 59.359 41.667 3.22 3.22 0.00 3.09
54 55 3.915993 GGCAGTAATTAAGCCCCCA 57.084 52.632 15.91 0.00 42.58 4.96
55 56 1.399714 GGCAGTAATTAAGCCCCCAC 58.600 55.000 15.91 0.00 42.58 4.61
56 57 1.399714 GCAGTAATTAAGCCCCCACC 58.600 55.000 0.77 0.00 0.00 4.61
57 58 1.675552 CAGTAATTAAGCCCCCACCG 58.324 55.000 0.00 0.00 0.00 4.94
58 59 1.064979 CAGTAATTAAGCCCCCACCGT 60.065 52.381 0.00 0.00 0.00 4.83
59 60 1.211212 AGTAATTAAGCCCCCACCGTC 59.789 52.381 0.00 0.00 0.00 4.79
60 61 0.547553 TAATTAAGCCCCCACCGTCC 59.452 55.000 0.00 0.00 0.00 4.79
61 62 1.502527 AATTAAGCCCCCACCGTCCA 61.503 55.000 0.00 0.00 0.00 4.02
62 63 1.286305 ATTAAGCCCCCACCGTCCAT 61.286 55.000 0.00 0.00 0.00 3.41
63 64 0.620990 TTAAGCCCCCACCGTCCATA 60.621 55.000 0.00 0.00 0.00 2.74
64 65 1.052124 TAAGCCCCCACCGTCCATAG 61.052 60.000 0.00 0.00 0.00 2.23
65 66 2.766651 GCCCCCACCGTCCATAGA 60.767 66.667 0.00 0.00 0.00 1.98
66 67 2.372074 GCCCCCACCGTCCATAGAA 61.372 63.158 0.00 0.00 0.00 2.10
67 68 1.917336 GCCCCCACCGTCCATAGAAA 61.917 60.000 0.00 0.00 0.00 2.52
68 69 0.621609 CCCCCACCGTCCATAGAAAA 59.378 55.000 0.00 0.00 0.00 2.29
69 70 1.680860 CCCCCACCGTCCATAGAAAAC 60.681 57.143 0.00 0.00 0.00 2.43
70 71 1.003812 CCCCACCGTCCATAGAAAACA 59.996 52.381 0.00 0.00 0.00 2.83
71 72 2.081462 CCCACCGTCCATAGAAAACAC 58.919 52.381 0.00 0.00 0.00 3.32
72 73 2.081462 CCACCGTCCATAGAAAACACC 58.919 52.381 0.00 0.00 0.00 4.16
73 74 1.730064 CACCGTCCATAGAAAACACCG 59.270 52.381 0.00 0.00 0.00 4.94
74 75 1.338389 ACCGTCCATAGAAAACACCGG 60.338 52.381 0.00 0.00 39.96 5.28
75 76 1.066716 CCGTCCATAGAAAACACCGGA 60.067 52.381 9.46 0.00 36.37 5.14
76 77 2.613474 CCGTCCATAGAAAACACCGGAA 60.613 50.000 9.46 0.00 36.37 4.30
77 78 2.671396 CGTCCATAGAAAACACCGGAAG 59.329 50.000 9.46 1.96 0.00 3.46
90 91 1.281656 CGGAAGGACCAACAAACGC 59.718 57.895 0.00 0.00 38.90 4.84
91 92 1.440938 CGGAAGGACCAACAAACGCA 61.441 55.000 0.00 0.00 38.90 5.24
92 93 0.741915 GGAAGGACCAACAAACGCAA 59.258 50.000 0.00 0.00 38.79 4.85
93 94 1.135333 GGAAGGACCAACAAACGCAAA 59.865 47.619 0.00 0.00 38.79 3.68
94 95 2.417515 GGAAGGACCAACAAACGCAAAA 60.418 45.455 0.00 0.00 38.79 2.44
95 96 2.287393 AGGACCAACAAACGCAAAAC 57.713 45.000 0.00 0.00 0.00 2.43
96 97 1.134936 AGGACCAACAAACGCAAAACC 60.135 47.619 0.00 0.00 0.00 3.27
97 98 1.282817 GACCAACAAACGCAAAACCC 58.717 50.000 0.00 0.00 0.00 4.11
98 99 0.608640 ACCAACAAACGCAAAACCCA 59.391 45.000 0.00 0.00 0.00 4.51
99 100 1.003108 CCAACAAACGCAAAACCCAC 58.997 50.000 0.00 0.00 0.00 4.61
100 101 1.673033 CCAACAAACGCAAAACCCACA 60.673 47.619 0.00 0.00 0.00 4.17
101 102 2.275318 CAACAAACGCAAAACCCACAT 58.725 42.857 0.00 0.00 0.00 3.21
102 103 2.217429 ACAAACGCAAAACCCACATC 57.783 45.000 0.00 0.00 0.00 3.06
103 104 1.754226 ACAAACGCAAAACCCACATCT 59.246 42.857 0.00 0.00 0.00 2.90
104 105 2.126467 CAAACGCAAAACCCACATCTG 58.874 47.619 0.00 0.00 0.00 2.90
105 106 1.686355 AACGCAAAACCCACATCTGA 58.314 45.000 0.00 0.00 0.00 3.27
106 107 0.951558 ACGCAAAACCCACATCTGAC 59.048 50.000 0.00 0.00 0.00 3.51
107 108 0.110238 CGCAAAACCCACATCTGACG 60.110 55.000 0.00 0.00 0.00 4.35
108 109 0.387239 GCAAAACCCACATCTGACGC 60.387 55.000 0.00 0.00 0.00 5.19
109 110 0.950836 CAAAACCCACATCTGACGCA 59.049 50.000 0.00 0.00 0.00 5.24
110 111 1.541147 CAAAACCCACATCTGACGCAT 59.459 47.619 0.00 0.00 0.00 4.73
111 112 1.453155 AAACCCACATCTGACGCATC 58.547 50.000 0.00 0.00 0.00 3.91
112 113 0.740868 AACCCACATCTGACGCATCG 60.741 55.000 0.00 0.00 0.00 3.84
113 114 1.153568 CCCACATCTGACGCATCGT 60.154 57.895 0.00 0.00 45.10 3.73
114 115 1.423721 CCCACATCTGACGCATCGTG 61.424 60.000 0.00 0.00 41.37 4.35
115 116 1.346197 CACATCTGACGCATCGTGC 59.654 57.895 0.00 0.58 41.37 5.34
116 117 1.811266 ACATCTGACGCATCGTGCC 60.811 57.895 0.00 0.00 41.37 5.01
117 118 1.810853 CATCTGACGCATCGTGCCA 60.811 57.895 0.00 0.00 41.37 4.92
118 119 1.811266 ATCTGACGCATCGTGCCAC 60.811 57.895 0.00 0.00 41.37 5.01
119 120 2.505635 ATCTGACGCATCGTGCCACA 62.506 55.000 0.00 4.72 41.37 4.17
120 121 2.047370 TGACGCATCGTGCCACAT 60.047 55.556 0.00 0.00 41.37 3.21
121 122 2.028766 CTGACGCATCGTGCCACATC 62.029 60.000 0.00 0.12 41.37 3.06
122 123 2.047370 ACGCATCGTGCCACATCA 60.047 55.556 0.00 0.00 41.12 3.07
123 124 2.296692 GACGCATCGTGCCACATCAC 62.297 60.000 0.00 0.00 41.37 3.06
124 125 2.389809 CGCATCGTGCCACATCACA 61.390 57.895 0.00 0.00 41.12 3.58
125 126 1.426621 GCATCGTGCCACATCACAG 59.573 57.895 0.00 0.00 37.42 3.66
126 127 1.020861 GCATCGTGCCACATCACAGA 61.021 55.000 0.00 0.00 37.42 3.41
127 128 0.723414 CATCGTGCCACATCACAGAC 59.277 55.000 0.00 0.00 36.80 3.51
128 129 0.391661 ATCGTGCCACATCACAGACC 60.392 55.000 0.00 0.00 36.80 3.85
129 130 2.034879 CGTGCCACATCACAGACCC 61.035 63.158 0.00 0.00 36.80 4.46
130 131 1.073025 GTGCCACATCACAGACCCA 59.927 57.895 0.00 0.00 36.97 4.51
131 132 0.322816 GTGCCACATCACAGACCCAT 60.323 55.000 0.00 0.00 36.97 4.00
132 133 0.322726 TGCCACATCACAGACCCATG 60.323 55.000 0.00 0.00 0.00 3.66
133 134 0.035152 GCCACATCACAGACCCATGA 60.035 55.000 0.00 0.00 0.00 3.07
134 135 1.742761 CCACATCACAGACCCATGAC 58.257 55.000 0.00 0.00 0.00 3.06
135 136 1.003464 CCACATCACAGACCCATGACA 59.997 52.381 0.00 0.00 0.00 3.58
136 137 2.356432 CCACATCACAGACCCATGACAT 60.356 50.000 0.00 0.00 0.00 3.06
137 138 3.118298 CCACATCACAGACCCATGACATA 60.118 47.826 0.00 0.00 0.00 2.29
138 139 3.873361 CACATCACAGACCCATGACATAC 59.127 47.826 0.00 0.00 0.00 2.39
139 140 2.959507 TCACAGACCCATGACATACG 57.040 50.000 0.00 0.00 0.00 3.06
140 141 2.176045 TCACAGACCCATGACATACGT 58.824 47.619 0.00 0.00 0.00 3.57
141 142 2.165641 TCACAGACCCATGACATACGTC 59.834 50.000 0.00 6.11 42.93 4.34
152 153 2.733517 GACATACGTCAGCTAGGAAGC 58.266 52.381 0.00 0.00 42.13 3.86
153 154 2.855187 GACATACGTCAGCTAGGAAGCG 60.855 54.545 0.00 0.00 42.34 4.68
154 155 5.328470 GACATACGTCAGCTAGGAAGCGT 62.328 52.174 0.00 0.00 42.34 5.07
155 156 6.732985 GACATACGTCAGCTAGGAAGCGTT 62.733 50.000 0.00 0.00 42.34 4.84
157 158 8.801589 GACATACGTCAGCTAGGAAGCGTTTA 62.802 46.154 0.00 0.00 42.34 2.01
164 165 4.836931 GCTAGGAAGCGTTTACAGTTAC 57.163 45.455 0.00 0.00 39.39 2.50
165 166 4.492611 GCTAGGAAGCGTTTACAGTTACT 58.507 43.478 0.00 0.00 39.39 2.24
166 167 4.928020 GCTAGGAAGCGTTTACAGTTACTT 59.072 41.667 0.00 0.00 39.39 2.24
167 168 5.407691 GCTAGGAAGCGTTTACAGTTACTTT 59.592 40.000 0.00 0.00 39.39 2.66
168 169 5.668558 AGGAAGCGTTTACAGTTACTTTG 57.331 39.130 0.00 0.00 0.00 2.77
169 170 5.121105 AGGAAGCGTTTACAGTTACTTTGT 58.879 37.500 0.00 0.00 0.00 2.83
170 171 5.235831 AGGAAGCGTTTACAGTTACTTTGTC 59.764 40.000 0.00 0.00 0.00 3.18
171 172 5.006941 GGAAGCGTTTACAGTTACTTTGTCA 59.993 40.000 0.00 0.00 0.00 3.58
172 173 6.425577 AAGCGTTTACAGTTACTTTGTCAA 57.574 33.333 0.00 0.00 0.00 3.18
173 174 6.613755 AGCGTTTACAGTTACTTTGTCAAT 57.386 33.333 0.00 0.00 0.00 2.57
174 175 6.656003 AGCGTTTACAGTTACTTTGTCAATC 58.344 36.000 0.00 0.00 0.00 2.67
175 176 6.482308 AGCGTTTACAGTTACTTTGTCAATCT 59.518 34.615 0.00 0.00 0.00 2.40
176 177 7.012044 AGCGTTTACAGTTACTTTGTCAATCTT 59.988 33.333 0.00 0.00 0.00 2.40
177 178 7.642586 GCGTTTACAGTTACTTTGTCAATCTTT 59.357 33.333 0.00 0.00 0.00 2.52
181 182 9.841295 TTACAGTTACTTTGTCAATCTTTACCT 57.159 29.630 0.00 0.00 0.00 3.08
182 183 8.747538 ACAGTTACTTTGTCAATCTTTACCTT 57.252 30.769 0.00 0.00 0.00 3.50
183 184 9.185680 ACAGTTACTTTGTCAATCTTTACCTTT 57.814 29.630 0.00 0.00 0.00 3.11
184 185 9.450807 CAGTTACTTTGTCAATCTTTACCTTTG 57.549 33.333 0.00 0.00 0.00 2.77
185 186 9.403583 AGTTACTTTGTCAATCTTTACCTTTGA 57.596 29.630 0.00 0.00 0.00 2.69
188 189 8.237811 ACTTTGTCAATCTTTACCTTTGATGT 57.762 30.769 0.00 0.00 32.48 3.06
189 190 8.352942 ACTTTGTCAATCTTTACCTTTGATGTC 58.647 33.333 0.00 0.00 32.48 3.06
190 191 6.480524 TGTCAATCTTTACCTTTGATGTCG 57.519 37.500 0.00 0.00 32.48 4.35
191 192 5.995282 TGTCAATCTTTACCTTTGATGTCGT 59.005 36.000 0.00 0.00 32.48 4.34
192 193 6.485313 TGTCAATCTTTACCTTTGATGTCGTT 59.515 34.615 0.00 0.00 32.48 3.85
193 194 7.012894 TGTCAATCTTTACCTTTGATGTCGTTT 59.987 33.333 0.00 0.00 32.48 3.60
194 195 7.534239 GTCAATCTTTACCTTTGATGTCGTTTC 59.466 37.037 0.00 0.00 32.48 2.78
195 196 5.585500 TCTTTACCTTTGATGTCGTTTCG 57.415 39.130 0.00 0.00 0.00 3.46
196 197 4.449743 TCTTTACCTTTGATGTCGTTTCGG 59.550 41.667 0.00 0.00 0.00 4.30
197 198 2.249844 ACCTTTGATGTCGTTTCGGT 57.750 45.000 0.00 0.00 0.00 4.69
198 199 3.389925 ACCTTTGATGTCGTTTCGGTA 57.610 42.857 0.00 0.00 0.00 4.02
199 200 3.934068 ACCTTTGATGTCGTTTCGGTAT 58.066 40.909 0.00 0.00 0.00 2.73
200 201 3.930848 ACCTTTGATGTCGTTTCGGTATC 59.069 43.478 0.00 0.00 0.00 2.24
201 202 3.000078 CCTTTGATGTCGTTTCGGTATCG 60.000 47.826 0.00 0.00 37.82 2.92
202 203 1.552226 TGATGTCGTTTCGGTATCGC 58.448 50.000 0.00 0.00 36.13 4.58
203 204 1.133598 TGATGTCGTTTCGGTATCGCT 59.866 47.619 0.00 0.00 36.13 4.93
204 205 1.779724 GATGTCGTTTCGGTATCGCTC 59.220 52.381 0.00 0.00 36.13 5.03
205 206 0.522626 TGTCGTTTCGGTATCGCTCA 59.477 50.000 0.00 0.00 36.13 4.26
206 207 1.068402 TGTCGTTTCGGTATCGCTCAA 60.068 47.619 0.00 0.00 36.13 3.02
207 208 1.987770 GTCGTTTCGGTATCGCTCAAA 59.012 47.619 0.00 0.00 36.13 2.69
208 209 2.027688 GTCGTTTCGGTATCGCTCAAAG 59.972 50.000 0.00 0.00 36.13 2.77
209 210 2.095110 TCGTTTCGGTATCGCTCAAAGA 60.095 45.455 0.00 0.00 36.13 2.52
210 211 2.664568 CGTTTCGGTATCGCTCAAAGAA 59.335 45.455 0.00 0.00 36.13 2.52
211 212 3.241678 CGTTTCGGTATCGCTCAAAGAAG 60.242 47.826 0.00 0.00 36.13 2.85
212 213 3.861276 TTCGGTATCGCTCAAAGAAGA 57.139 42.857 0.00 0.00 36.13 2.87
213 214 3.422417 TCGGTATCGCTCAAAGAAGAG 57.578 47.619 0.00 0.00 38.68 2.85
214 215 2.099263 TCGGTATCGCTCAAAGAAGAGG 59.901 50.000 0.00 0.00 36.15 3.69
215 216 2.799917 CGGTATCGCTCAAAGAAGAGGG 60.800 54.545 0.00 0.00 46.50 4.30
216 217 2.168728 GGTATCGCTCAAAGAAGAGGGT 59.831 50.000 7.71 0.08 45.63 4.34
217 218 2.393271 ATCGCTCAAAGAAGAGGGTG 57.607 50.000 7.71 0.00 45.63 4.61
218 219 1.048601 TCGCTCAAAGAAGAGGGTGT 58.951 50.000 7.71 0.00 45.63 4.16
219 220 1.151668 CGCTCAAAGAAGAGGGTGTG 58.848 55.000 0.00 0.00 41.93 3.82
220 221 0.877743 GCTCAAAGAAGAGGGTGTGC 59.122 55.000 0.00 0.00 36.15 4.57
221 222 1.151668 CTCAAAGAAGAGGGTGTGCG 58.848 55.000 0.00 0.00 31.94 5.34
222 223 0.468226 TCAAAGAAGAGGGTGTGCGT 59.532 50.000 0.00 0.00 0.00 5.24
223 224 0.588252 CAAAGAAGAGGGTGTGCGTG 59.412 55.000 0.00 0.00 0.00 5.34
224 225 0.180406 AAAGAAGAGGGTGTGCGTGT 59.820 50.000 0.00 0.00 0.00 4.49
225 226 0.532862 AAGAAGAGGGTGTGCGTGTG 60.533 55.000 0.00 0.00 0.00 3.82
226 227 1.227556 GAAGAGGGTGTGCGTGTGT 60.228 57.895 0.00 0.00 0.00 3.72
227 228 1.498865 GAAGAGGGTGTGCGTGTGTG 61.499 60.000 0.00 0.00 0.00 3.82
228 229 2.203015 GAGGGTGTGCGTGTGTGT 60.203 61.111 0.00 0.00 0.00 3.72
229 230 1.817941 GAGGGTGTGCGTGTGTGTT 60.818 57.895 0.00 0.00 0.00 3.32
230 231 1.772063 GAGGGTGTGCGTGTGTGTTC 61.772 60.000 0.00 0.00 0.00 3.18
231 232 2.109739 GGGTGTGCGTGTGTGTTCA 61.110 57.895 0.00 0.00 0.00 3.18
232 233 1.444119 GGGTGTGCGTGTGTGTTCAT 61.444 55.000 0.00 0.00 0.00 2.57
233 234 1.222300 GGTGTGCGTGTGTGTTCATA 58.778 50.000 0.00 0.00 0.00 2.15
234 235 1.194547 GGTGTGCGTGTGTGTTCATAG 59.805 52.381 0.00 0.00 0.00 2.23
235 236 1.194547 GTGTGCGTGTGTGTTCATAGG 59.805 52.381 0.00 0.00 0.00 2.57
236 237 0.796312 GTGCGTGTGTGTTCATAGGG 59.204 55.000 0.00 0.00 0.00 3.53
237 238 0.394938 TGCGTGTGTGTTCATAGGGT 59.605 50.000 0.00 0.00 0.00 4.34
238 239 1.202710 TGCGTGTGTGTTCATAGGGTT 60.203 47.619 0.00 0.00 0.00 4.11
239 240 1.196808 GCGTGTGTGTTCATAGGGTTG 59.803 52.381 0.00 0.00 0.00 3.77
240 241 2.761559 CGTGTGTGTTCATAGGGTTGA 58.238 47.619 0.00 0.00 0.00 3.18
241 242 2.736721 CGTGTGTGTTCATAGGGTTGAG 59.263 50.000 0.00 0.00 0.00 3.02
242 243 3.740115 GTGTGTGTTCATAGGGTTGAGT 58.260 45.455 0.00 0.00 0.00 3.41
243 244 3.498397 GTGTGTGTTCATAGGGTTGAGTG 59.502 47.826 0.00 0.00 0.00 3.51
244 245 3.135712 TGTGTGTTCATAGGGTTGAGTGT 59.864 43.478 0.00 0.00 0.00 3.55
245 246 4.345547 TGTGTGTTCATAGGGTTGAGTGTA 59.654 41.667 0.00 0.00 0.00 2.90
246 247 5.012664 TGTGTGTTCATAGGGTTGAGTGTAT 59.987 40.000 0.00 0.00 0.00 2.29
247 248 5.351465 GTGTGTTCATAGGGTTGAGTGTATG 59.649 44.000 0.00 0.00 0.00 2.39
248 249 5.012664 TGTGTTCATAGGGTTGAGTGTATGT 59.987 40.000 0.00 0.00 0.00 2.29
249 250 5.351465 GTGTTCATAGGGTTGAGTGTATGTG 59.649 44.000 0.00 0.00 0.00 3.21
250 251 5.012664 TGTTCATAGGGTTGAGTGTATGTGT 59.987 40.000 0.00 0.00 0.00 3.72
251 252 5.084818 TCATAGGGTTGAGTGTATGTGTG 57.915 43.478 0.00 0.00 0.00 3.82
252 253 4.530553 TCATAGGGTTGAGTGTATGTGTGT 59.469 41.667 0.00 0.00 0.00 3.72
253 254 3.126001 AGGGTTGAGTGTATGTGTGTG 57.874 47.619 0.00 0.00 0.00 3.82
254 255 1.535462 GGGTTGAGTGTATGTGTGTGC 59.465 52.381 0.00 0.00 0.00 4.57
255 256 1.194547 GGTTGAGTGTATGTGTGTGCG 59.805 52.381 0.00 0.00 0.00 5.34
256 257 0.865111 TTGAGTGTATGTGTGTGCGC 59.135 50.000 0.00 0.00 0.00 6.09
257 258 0.249657 TGAGTGTATGTGTGTGCGCA 60.250 50.000 5.66 5.66 39.66 6.09
258 259 1.078709 GAGTGTATGTGTGTGCGCAT 58.921 50.000 15.91 0.00 46.38 4.73
259 260 0.798159 AGTGTATGTGTGTGCGCATG 59.202 50.000 15.91 0.00 44.61 4.06
260 261 0.516877 GTGTATGTGTGTGCGCATGT 59.483 50.000 15.91 0.00 44.61 3.21
261 262 0.516439 TGTATGTGTGTGCGCATGTG 59.484 50.000 15.91 0.66 44.61 3.21
262 263 0.794229 GTATGTGTGTGCGCATGTGC 60.794 55.000 24.25 24.25 44.61 4.57
274 275 2.163826 GCATGTGCGATTGTACTGTG 57.836 50.000 2.66 3.34 0.00 3.66
275 276 1.464608 GCATGTGCGATTGTACTGTGT 59.535 47.619 2.66 0.00 0.00 3.72
276 277 2.095768 GCATGTGCGATTGTACTGTGTT 60.096 45.455 2.66 0.00 0.00 3.32
277 278 3.124466 GCATGTGCGATTGTACTGTGTTA 59.876 43.478 2.66 0.00 0.00 2.41
278 279 4.201812 GCATGTGCGATTGTACTGTGTTAT 60.202 41.667 2.66 0.00 0.00 1.89
279 280 4.919677 TGTGCGATTGTACTGTGTTATG 57.080 40.909 2.66 0.00 0.00 1.90
280 281 3.124466 TGTGCGATTGTACTGTGTTATGC 59.876 43.478 2.66 0.00 0.00 3.14
281 282 3.124466 GTGCGATTGTACTGTGTTATGCA 59.876 43.478 0.00 0.00 0.00 3.96
282 283 3.748568 TGCGATTGTACTGTGTTATGCAA 59.251 39.130 0.00 0.00 0.00 4.08
283 284 4.142924 TGCGATTGTACTGTGTTATGCAAG 60.143 41.667 0.00 0.00 0.00 4.01
284 285 4.092821 GCGATTGTACTGTGTTATGCAAGA 59.907 41.667 0.00 0.00 0.00 3.02
285 286 5.220662 GCGATTGTACTGTGTTATGCAAGAT 60.221 40.000 0.00 0.00 0.00 2.40
286 287 6.019075 GCGATTGTACTGTGTTATGCAAGATA 60.019 38.462 0.00 0.00 0.00 1.98
287 288 7.337718 CGATTGTACTGTGTTATGCAAGATAC 58.662 38.462 0.00 0.00 0.00 2.24
288 289 7.010091 CGATTGTACTGTGTTATGCAAGATACA 59.990 37.037 0.00 0.00 0.00 2.29
289 290 7.971183 TTGTACTGTGTTATGCAAGATACAA 57.029 32.000 0.00 0.00 0.00 2.41
290 291 7.359262 TGTACTGTGTTATGCAAGATACAAC 57.641 36.000 0.00 0.00 0.00 3.32
291 292 7.158697 TGTACTGTGTTATGCAAGATACAACT 58.841 34.615 0.00 0.00 0.00 3.16
292 293 8.308207 TGTACTGTGTTATGCAAGATACAACTA 58.692 33.333 0.00 0.00 0.00 2.24
293 294 9.146984 GTACTGTGTTATGCAAGATACAACTAA 57.853 33.333 0.00 0.00 0.00 2.24
294 295 8.029642 ACTGTGTTATGCAAGATACAACTAAC 57.970 34.615 0.00 0.00 0.00 2.34
295 296 7.659799 ACTGTGTTATGCAAGATACAACTAACA 59.340 33.333 0.00 0.00 0.00 2.41
296 297 8.560355 TGTGTTATGCAAGATACAACTAACAT 57.440 30.769 6.94 0.00 32.27 2.71
297 298 8.450180 TGTGTTATGCAAGATACAACTAACATG 58.550 33.333 6.94 0.00 32.27 3.21
298 299 8.450964 GTGTTATGCAAGATACAACTAACATGT 58.549 33.333 6.94 0.00 32.27 3.21
299 300 9.008965 TGTTATGCAAGATACAACTAACATGTT 57.991 29.630 16.68 16.68 32.27 2.71
300 301 9.840427 GTTATGCAAGATACAACTAACATGTTT 57.160 29.630 17.78 0.09 32.27 2.83
355 356 7.126421 GGAATATCATGGACATACTACCCTCAT 59.874 40.741 0.00 0.00 0.00 2.90
356 357 8.454859 AATATCATGGACATACTACCCTCATT 57.545 34.615 0.00 0.00 0.00 2.57
357 358 6.770286 ATCATGGACATACTACCCTCATTT 57.230 37.500 0.00 0.00 0.00 2.32
390 391 0.814457 TTGCCACACTTGTGTTGACC 59.186 50.000 8.52 0.00 44.21 4.02
404 416 7.450014 ACTTGTGTTGACCAATTTATGTGGATA 59.550 33.333 0.00 0.00 39.62 2.59
437 449 1.865865 CGTGGCGAACTATTGGCTAT 58.134 50.000 0.00 0.00 36.47 2.97
441 453 4.315803 GTGGCGAACTATTGGCTATGTAT 58.684 43.478 0.00 0.00 36.47 2.29
443 455 3.933332 GGCGAACTATTGGCTATGTATCC 59.067 47.826 0.00 0.00 34.56 2.59
455 467 4.887071 GGCTATGTATCCAACCACAAATGA 59.113 41.667 0.00 0.00 0.00 2.57
474 486 0.530744 AAAGCGTGGCAGACTATCGA 59.469 50.000 0.00 0.00 0.00 3.59
524 540 0.386985 GTCGAGACGAGGACCAACAC 60.387 60.000 0.00 0.00 36.23 3.32
533 549 2.737376 GACCAACACTCGCCGGAC 60.737 66.667 5.05 0.00 0.00 4.79
621 643 1.067071 CGGCGAAAGAGACCTACCTTT 60.067 52.381 0.00 0.00 35.52 3.11
623 645 2.347731 GCGAAAGAGACCTACCTTTGG 58.652 52.381 0.00 0.00 33.23 3.28
626 648 0.992695 AAGAGACCTACCTTTGGCCC 59.007 55.000 0.00 0.00 0.00 5.80
629 651 1.078637 GACCTACCTTTGGCCCGTC 60.079 63.158 0.00 0.00 0.00 4.79
630 652 1.833787 GACCTACCTTTGGCCCGTCA 61.834 60.000 0.00 0.00 0.00 4.35
631 653 1.078426 CCTACCTTTGGCCCGTCAG 60.078 63.158 0.00 0.00 0.00 3.51
632 654 1.745489 CTACCTTTGGCCCGTCAGC 60.745 63.158 0.00 0.00 0.00 4.26
739 1144 3.106407 GTCAGAGACCACGCGCAC 61.106 66.667 5.73 0.00 0.00 5.34
741 1146 4.363990 CAGAGACCACGCGCACCT 62.364 66.667 5.73 0.00 0.00 4.00
742 1147 4.363990 AGAGACCACGCGCACCTG 62.364 66.667 5.73 0.00 0.00 4.00
813 1229 4.214327 CTCCTTCCTCGGCTCCGC 62.214 72.222 2.96 0.00 39.59 5.54
1041 1479 3.068691 TCCTCCTCCAAGTCGCGG 61.069 66.667 6.13 0.00 0.00 6.46
1212 1656 4.821589 CTGGCCGCCCTCTTCGAC 62.822 72.222 7.03 0.00 0.00 4.20
1570 2014 1.072380 ATGGCCTGATCCATCCCCT 60.072 57.895 3.32 0.00 43.00 4.79
1595 2065 1.277326 TGATTCAGCGATTTCGTCCG 58.723 50.000 1.55 0.00 42.22 4.79
1615 2089 2.904131 CCTTCCTCGCTCCTTCCC 59.096 66.667 0.00 0.00 0.00 3.97
1749 2243 1.805945 GTGCCGAGTGCCGAGTAAG 60.806 63.158 0.00 0.00 41.76 2.34
1750 2244 2.273179 TGCCGAGTGCCGAGTAAGT 61.273 57.895 0.00 0.00 41.76 2.24
1812 2306 8.391859 TCGCGATTATCTAAAGATCTGAGATAC 58.608 37.037 19.99 12.59 33.06 2.24
1813 2307 8.394877 CGCGATTATCTAAAGATCTGAGATACT 58.605 37.037 19.99 16.66 33.06 2.12
1873 2402 2.555325 TGTTCTTGCCATCTCTGCTTTG 59.445 45.455 0.00 0.00 0.00 2.77
1877 2406 2.105006 TGCCATCTCTGCTTTGAGTC 57.895 50.000 0.00 0.00 35.68 3.36
1926 2460 2.203139 TGTGGTGACTTGTGCGGG 60.203 61.111 0.00 0.00 0.00 6.13
1941 2475 3.580895 TGTGCGGGCCAGATTATTAGATA 59.419 43.478 7.23 0.00 0.00 1.98
1942 2476 4.225042 TGTGCGGGCCAGATTATTAGATAT 59.775 41.667 7.23 0.00 0.00 1.63
1943 2477 5.186198 GTGCGGGCCAGATTATTAGATATT 58.814 41.667 7.23 0.00 0.00 1.28
1944 2478 6.070481 TGTGCGGGCCAGATTATTAGATATTA 60.070 38.462 7.23 0.00 0.00 0.98
1945 2479 6.480320 GTGCGGGCCAGATTATTAGATATTAG 59.520 42.308 7.23 0.00 0.00 1.73
1946 2480 6.382859 TGCGGGCCAGATTATTAGATATTAGA 59.617 38.462 7.23 0.00 0.00 2.10
1947 2481 6.702282 GCGGGCCAGATTATTAGATATTAGAC 59.298 42.308 7.23 0.00 0.00 2.59
1996 2537 5.426509 TCTGTTCAGAATCTGGATGTATGGT 59.573 40.000 10.71 0.00 31.51 3.55
2033 2574 0.590195 CTGCAGCGCCATCTTATTCC 59.410 55.000 2.29 0.00 0.00 3.01
2034 2575 0.819259 TGCAGCGCCATCTTATTCCC 60.819 55.000 2.29 0.00 0.00 3.97
2066 2607 3.179443 TCTGCTCGTCTTCTTGTTTGT 57.821 42.857 0.00 0.00 0.00 2.83
2070 2611 4.658071 TGCTCGTCTTCTTGTTTGTTTTC 58.342 39.130 0.00 0.00 0.00 2.29
2091 2632 0.535102 CAGTTGCGTCCAAGAGGGTT 60.535 55.000 0.00 0.00 38.11 4.11
2101 2646 2.152016 CCAAGAGGGTTTTCGTCTTCC 58.848 52.381 0.00 0.00 45.52 3.46
2103 2648 1.046204 AGAGGGTTTTCGTCTTCCGT 58.954 50.000 0.00 0.00 37.31 4.69
2133 2680 9.757859 CGGATTATTTAAGTACGATCTAGACTC 57.242 37.037 0.00 0.00 0.00 3.36
2137 2684 3.557228 AAGTACGATCTAGACTCCGGT 57.443 47.619 0.00 3.15 0.00 5.28
2148 2695 0.817229 GACTCCGGTAGTAGGGTCGG 60.817 65.000 0.00 0.00 39.07 4.79
2177 2724 5.351233 TTTTGCCGCTGAAATATATACCG 57.649 39.130 0.00 0.00 0.00 4.02
2178 2725 2.343101 TGCCGCTGAAATATATACCGC 58.657 47.619 0.00 0.00 0.00 5.68
2181 2728 3.761657 CCGCTGAAATATATACCGCGTA 58.238 45.455 18.85 0.00 37.67 4.42
2195 2743 2.159653 ACCGCGTACTACGTTTCTACTG 60.160 50.000 4.92 0.00 44.73 2.74
2199 2747 3.916776 GCGTACTACGTTTCTACTGCTTT 59.083 43.478 10.23 0.00 44.73 3.51
2201 2749 5.388944 CGTACTACGTTTCTACTGCTTTCT 58.611 41.667 0.00 0.00 36.74 2.52
2202 2750 5.855395 CGTACTACGTTTCTACTGCTTTCTT 59.145 40.000 0.00 0.00 36.74 2.52
2203 2751 6.183359 CGTACTACGTTTCTACTGCTTTCTTG 60.183 42.308 0.00 0.00 36.74 3.02
2204 2752 3.879932 ACGTTTCTACTGCTTTCTTGC 57.120 42.857 0.00 0.00 0.00 4.01
2205 2753 3.467803 ACGTTTCTACTGCTTTCTTGCT 58.532 40.909 0.00 0.00 0.00 3.91
2206 2754 3.248602 ACGTTTCTACTGCTTTCTTGCTG 59.751 43.478 0.00 0.00 37.79 4.41
2207 2755 3.248602 CGTTTCTACTGCTTTCTTGCTGT 59.751 43.478 0.00 0.00 44.90 4.40
2208 2756 4.260784 CGTTTCTACTGCTTTCTTGCTGTT 60.261 41.667 4.54 0.00 43.19 3.16
2212 2760 4.991056 TCTACTGCTTTCTTGCTGTTGTAG 59.009 41.667 4.54 0.00 43.19 2.74
2218 2766 4.555511 GCTTTCTTGCTGTTGTAGAAGTGG 60.556 45.833 0.00 0.00 30.32 4.00
2222 2770 3.386768 TGCTGTTGTAGAAGTGGAGTC 57.613 47.619 0.00 0.00 0.00 3.36
2223 2771 2.037251 TGCTGTTGTAGAAGTGGAGTCC 59.963 50.000 0.73 0.73 0.00 3.85
2230 2778 5.723672 TGTAGAAGTGGAGTCCTGTAAAG 57.276 43.478 11.33 0.00 0.00 1.85
2232 2780 2.303311 AGAAGTGGAGTCCTGTAAAGCC 59.697 50.000 11.33 0.00 0.00 4.35
2235 2783 0.984230 TGGAGTCCTGTAAAGCCCAG 59.016 55.000 11.33 0.00 0.00 4.45
2250 2798 3.285484 AGCCCAGTAGCTGAATTTGATG 58.715 45.455 0.00 0.00 42.95 3.07
2255 2803 3.019564 AGTAGCTGAATTTGATGGGTGC 58.980 45.455 0.00 0.00 0.00 5.01
2257 2805 1.547372 AGCTGAATTTGATGGGTGCAC 59.453 47.619 8.80 8.80 0.00 4.57
2272 2821 2.622942 GGTGCACCAGTTGAAATTCAGA 59.377 45.455 31.23 0.00 35.64 3.27
2273 2822 3.256631 GGTGCACCAGTTGAAATTCAGAT 59.743 43.478 31.23 0.00 35.64 2.90
2274 2823 4.458989 GGTGCACCAGTTGAAATTCAGATA 59.541 41.667 31.23 0.00 35.64 1.98
2275 2824 5.392380 GGTGCACCAGTTGAAATTCAGATAG 60.392 44.000 31.23 0.00 35.64 2.08
2277 2826 4.728882 GCACCAGTTGAAATTCAGATAGCG 60.729 45.833 0.00 0.00 0.00 4.26
2278 2827 4.393062 CACCAGTTGAAATTCAGATAGCGT 59.607 41.667 0.00 0.00 0.00 5.07
2281 2830 4.002982 AGTTGAAATTCAGATAGCGTGCA 58.997 39.130 0.00 0.00 0.00 4.57
2284 2833 5.657470 TGAAATTCAGATAGCGTGCATAC 57.343 39.130 0.00 0.00 0.00 2.39
2336 2887 3.270877 CCTGAGGGTGGAAATTTCTACG 58.729 50.000 23.38 12.25 39.29 3.51
2385 2936 0.744771 GAATCCCTGTTCCTCGTGCC 60.745 60.000 0.00 0.00 0.00 5.01
2477 3032 2.131023 GGGAGATTCCAGGACCTGAAT 58.869 52.381 23.77 18.54 38.64 2.57
2505 3060 4.142271 CGAATAGTCTTCTCTGGCTGAACT 60.142 45.833 0.00 0.00 0.00 3.01
2506 3061 5.066634 CGAATAGTCTTCTCTGGCTGAACTA 59.933 44.000 6.24 6.24 0.00 2.24
2516 3071 0.737715 GGCTGAACTAGTGGTGCTCG 60.738 60.000 0.00 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.750125 AGCTAGTTTTTGTTTGATTTTCTTAGG 57.250 29.630 0.00 0.00 0.00 2.69
10 11 9.313118 CCTTTGTAGCTAGTTTTTGTTTGATTT 57.687 29.630 0.00 0.00 0.00 2.17
11 12 7.926018 CCCTTTGTAGCTAGTTTTTGTTTGATT 59.074 33.333 0.00 0.00 0.00 2.57
12 13 7.433680 CCCTTTGTAGCTAGTTTTTGTTTGAT 58.566 34.615 0.00 0.00 0.00 2.57
13 14 6.681865 GCCCTTTGTAGCTAGTTTTTGTTTGA 60.682 38.462 0.00 0.00 0.00 2.69
14 15 5.462068 GCCCTTTGTAGCTAGTTTTTGTTTG 59.538 40.000 0.00 0.00 0.00 2.93
15 16 5.128008 TGCCCTTTGTAGCTAGTTTTTGTTT 59.872 36.000 0.00 0.00 0.00 2.83
16 17 4.647399 TGCCCTTTGTAGCTAGTTTTTGTT 59.353 37.500 0.00 0.00 0.00 2.83
17 18 4.211920 TGCCCTTTGTAGCTAGTTTTTGT 58.788 39.130 0.00 0.00 0.00 2.83
18 19 4.278419 ACTGCCCTTTGTAGCTAGTTTTTG 59.722 41.667 0.00 0.00 0.00 2.44
19 20 4.470602 ACTGCCCTTTGTAGCTAGTTTTT 58.529 39.130 0.00 0.00 0.00 1.94
20 21 4.100279 ACTGCCCTTTGTAGCTAGTTTT 57.900 40.909 0.00 0.00 0.00 2.43
21 22 3.790089 ACTGCCCTTTGTAGCTAGTTT 57.210 42.857 0.00 0.00 0.00 2.66
22 23 4.903045 TTACTGCCCTTTGTAGCTAGTT 57.097 40.909 0.00 0.00 0.00 2.24
23 24 5.437191 AATTACTGCCCTTTGTAGCTAGT 57.563 39.130 0.00 0.00 0.00 2.57
24 25 6.017852 GCTTAATTACTGCCCTTTGTAGCTAG 60.018 42.308 0.00 0.00 0.00 3.42
25 26 5.820947 GCTTAATTACTGCCCTTTGTAGCTA 59.179 40.000 0.00 0.00 0.00 3.32
26 27 4.640647 GCTTAATTACTGCCCTTTGTAGCT 59.359 41.667 0.00 0.00 0.00 3.32
27 28 4.202020 GGCTTAATTACTGCCCTTTGTAGC 60.202 45.833 14.58 3.82 40.71 3.58
28 29 5.500645 GGCTTAATTACTGCCCTTTGTAG 57.499 43.478 14.58 0.00 40.71 2.74
36 37 1.399714 GTGGGGGCTTAATTACTGCC 58.600 55.000 16.38 16.38 45.42 4.85
37 38 1.399714 GGTGGGGGCTTAATTACTGC 58.600 55.000 2.05 2.05 0.00 4.40
38 39 1.064979 ACGGTGGGGGCTTAATTACTG 60.065 52.381 0.00 0.00 0.00 2.74
39 40 1.211212 GACGGTGGGGGCTTAATTACT 59.789 52.381 0.00 0.00 0.00 2.24
40 41 1.671979 GACGGTGGGGGCTTAATTAC 58.328 55.000 0.00 0.00 0.00 1.89
41 42 0.547553 GGACGGTGGGGGCTTAATTA 59.452 55.000 0.00 0.00 0.00 1.40
42 43 1.305287 GGACGGTGGGGGCTTAATT 59.695 57.895 0.00 0.00 0.00 1.40
43 44 1.286305 ATGGACGGTGGGGGCTTAAT 61.286 55.000 0.00 0.00 0.00 1.40
44 45 0.620990 TATGGACGGTGGGGGCTTAA 60.621 55.000 0.00 0.00 0.00 1.85
45 46 1.003182 TATGGACGGTGGGGGCTTA 59.997 57.895 0.00 0.00 0.00 3.09
46 47 2.285818 TATGGACGGTGGGGGCTT 60.286 61.111 0.00 0.00 0.00 4.35
47 48 2.768344 CTATGGACGGTGGGGGCT 60.768 66.667 0.00 0.00 0.00 5.19
48 49 1.917336 TTTCTATGGACGGTGGGGGC 61.917 60.000 0.00 0.00 0.00 5.80
49 50 0.621609 TTTTCTATGGACGGTGGGGG 59.378 55.000 0.00 0.00 0.00 5.40
50 51 1.003812 TGTTTTCTATGGACGGTGGGG 59.996 52.381 0.00 0.00 0.00 4.96
51 52 2.081462 GTGTTTTCTATGGACGGTGGG 58.919 52.381 0.00 0.00 0.00 4.61
52 53 2.081462 GGTGTTTTCTATGGACGGTGG 58.919 52.381 0.00 0.00 0.00 4.61
53 54 1.730064 CGGTGTTTTCTATGGACGGTG 59.270 52.381 0.00 0.00 0.00 4.94
54 55 1.338389 CCGGTGTTTTCTATGGACGGT 60.338 52.381 0.00 0.00 35.67 4.83
55 56 1.066716 TCCGGTGTTTTCTATGGACGG 60.067 52.381 0.00 0.00 41.28 4.79
56 57 2.373540 TCCGGTGTTTTCTATGGACG 57.626 50.000 0.00 0.00 0.00 4.79
57 58 3.007635 CCTTCCGGTGTTTTCTATGGAC 58.992 50.000 0.00 0.00 0.00 4.02
58 59 2.907696 TCCTTCCGGTGTTTTCTATGGA 59.092 45.455 0.00 0.00 0.00 3.41
59 60 3.007635 GTCCTTCCGGTGTTTTCTATGG 58.992 50.000 0.00 0.00 0.00 2.74
60 61 3.007635 GGTCCTTCCGGTGTTTTCTATG 58.992 50.000 0.00 0.00 0.00 2.23
61 62 2.640826 TGGTCCTTCCGGTGTTTTCTAT 59.359 45.455 0.00 0.00 39.52 1.98
62 63 2.048601 TGGTCCTTCCGGTGTTTTCTA 58.951 47.619 0.00 0.00 39.52 2.10
63 64 0.841289 TGGTCCTTCCGGTGTTTTCT 59.159 50.000 0.00 0.00 39.52 2.52
64 65 1.335810 GTTGGTCCTTCCGGTGTTTTC 59.664 52.381 0.00 0.00 39.52 2.29
65 66 1.341187 TGTTGGTCCTTCCGGTGTTTT 60.341 47.619 0.00 0.00 39.52 2.43
66 67 0.256464 TGTTGGTCCTTCCGGTGTTT 59.744 50.000 0.00 0.00 39.52 2.83
67 68 0.256464 TTGTTGGTCCTTCCGGTGTT 59.744 50.000 0.00 0.00 39.52 3.32
68 69 0.256464 TTTGTTGGTCCTTCCGGTGT 59.744 50.000 0.00 0.00 39.52 4.16
69 70 0.666374 GTTTGTTGGTCCTTCCGGTG 59.334 55.000 0.00 0.00 39.52 4.94
70 71 0.816421 CGTTTGTTGGTCCTTCCGGT 60.816 55.000 0.00 0.00 39.52 5.28
71 72 1.946267 CGTTTGTTGGTCCTTCCGG 59.054 57.895 0.00 0.00 39.52 5.14
72 73 1.281656 GCGTTTGTTGGTCCTTCCG 59.718 57.895 0.00 0.00 39.52 4.30
73 74 0.741915 TTGCGTTTGTTGGTCCTTCC 59.258 50.000 0.00 0.00 0.00 3.46
74 75 2.570442 TTTGCGTTTGTTGGTCCTTC 57.430 45.000 0.00 0.00 0.00 3.46
75 76 2.612604 GTTTTGCGTTTGTTGGTCCTT 58.387 42.857 0.00 0.00 0.00 3.36
76 77 1.134936 GGTTTTGCGTTTGTTGGTCCT 60.135 47.619 0.00 0.00 0.00 3.85
77 78 1.282817 GGTTTTGCGTTTGTTGGTCC 58.717 50.000 0.00 0.00 0.00 4.46
78 79 1.282817 GGGTTTTGCGTTTGTTGGTC 58.717 50.000 0.00 0.00 0.00 4.02
79 80 0.608640 TGGGTTTTGCGTTTGTTGGT 59.391 45.000 0.00 0.00 0.00 3.67
80 81 1.003108 GTGGGTTTTGCGTTTGTTGG 58.997 50.000 0.00 0.00 0.00 3.77
81 82 1.714794 TGTGGGTTTTGCGTTTGTTG 58.285 45.000 0.00 0.00 0.00 3.33
82 83 2.167487 AGATGTGGGTTTTGCGTTTGTT 59.833 40.909 0.00 0.00 0.00 2.83
83 84 1.754226 AGATGTGGGTTTTGCGTTTGT 59.246 42.857 0.00 0.00 0.00 2.83
84 85 2.126467 CAGATGTGGGTTTTGCGTTTG 58.874 47.619 0.00 0.00 0.00 2.93
85 86 2.028130 TCAGATGTGGGTTTTGCGTTT 58.972 42.857 0.00 0.00 0.00 3.60
86 87 1.336755 GTCAGATGTGGGTTTTGCGTT 59.663 47.619 0.00 0.00 0.00 4.84
87 88 0.951558 GTCAGATGTGGGTTTTGCGT 59.048 50.000 0.00 0.00 0.00 5.24
88 89 0.110238 CGTCAGATGTGGGTTTTGCG 60.110 55.000 0.00 0.00 0.00 4.85
89 90 0.387239 GCGTCAGATGTGGGTTTTGC 60.387 55.000 0.00 0.00 0.00 3.68
90 91 0.950836 TGCGTCAGATGTGGGTTTTG 59.049 50.000 0.00 0.00 0.00 2.44
91 92 1.812571 GATGCGTCAGATGTGGGTTTT 59.187 47.619 0.00 0.00 0.00 2.43
92 93 1.453155 GATGCGTCAGATGTGGGTTT 58.547 50.000 0.00 0.00 0.00 3.27
93 94 0.740868 CGATGCGTCAGATGTGGGTT 60.741 55.000 6.75 0.00 0.00 4.11
94 95 1.153568 CGATGCGTCAGATGTGGGT 60.154 57.895 6.75 0.00 0.00 4.51
95 96 1.153568 ACGATGCGTCAGATGTGGG 60.154 57.895 6.75 0.00 33.69 4.61
96 97 2.001357 CACGATGCGTCAGATGTGG 58.999 57.895 6.75 0.00 38.32 4.17
97 98 1.346197 GCACGATGCGTCAGATGTG 59.654 57.895 6.75 6.99 38.32 3.21
98 99 1.811266 GGCACGATGCGTCAGATGT 60.811 57.895 6.75 0.00 46.21 3.06
99 100 1.810853 TGGCACGATGCGTCAGATG 60.811 57.895 6.75 2.24 46.21 2.90
100 101 1.811266 GTGGCACGATGCGTCAGAT 60.811 57.895 0.00 0.00 46.21 2.90
101 102 2.432456 GTGGCACGATGCGTCAGA 60.432 61.111 0.00 0.00 46.21 3.27
102 103 2.028766 GATGTGGCACGATGCGTCAG 62.029 60.000 13.77 1.57 46.21 3.51
103 104 2.047370 ATGTGGCACGATGCGTCA 60.047 55.556 13.77 0.00 46.21 4.35
104 105 2.100031 TGATGTGGCACGATGCGTC 61.100 57.895 13.77 0.00 46.21 5.19
105 106 2.047370 TGATGTGGCACGATGCGT 60.047 55.556 13.77 0.00 46.21 5.24
106 107 2.300597 CTGTGATGTGGCACGATGCG 62.301 60.000 13.77 0.00 46.21 4.73
107 108 1.020861 TCTGTGATGTGGCACGATGC 61.021 55.000 13.77 4.24 44.08 3.91
108 109 0.723414 GTCTGTGATGTGGCACGATG 59.277 55.000 13.77 0.15 41.63 3.84
109 110 0.391661 GGTCTGTGATGTGGCACGAT 60.392 55.000 13.77 7.68 41.63 3.73
110 111 1.005037 GGTCTGTGATGTGGCACGA 60.005 57.895 13.77 2.55 41.63 4.35
111 112 2.034879 GGGTCTGTGATGTGGCACG 61.035 63.158 13.77 0.00 41.63 5.34
112 113 0.322816 ATGGGTCTGTGATGTGGCAC 60.323 55.000 11.55 11.55 39.22 5.01
113 114 0.322726 CATGGGTCTGTGATGTGGCA 60.323 55.000 0.00 0.00 0.00 4.92
114 115 0.035152 TCATGGGTCTGTGATGTGGC 60.035 55.000 0.00 0.00 0.00 5.01
115 116 1.003464 TGTCATGGGTCTGTGATGTGG 59.997 52.381 0.00 0.00 0.00 4.17
116 117 2.477845 TGTCATGGGTCTGTGATGTG 57.522 50.000 0.00 0.00 0.00 3.21
117 118 3.430790 CGTATGTCATGGGTCTGTGATGT 60.431 47.826 0.00 0.00 0.00 3.06
118 119 3.126073 CGTATGTCATGGGTCTGTGATG 58.874 50.000 0.00 0.00 0.00 3.07
119 120 2.766263 ACGTATGTCATGGGTCTGTGAT 59.234 45.455 0.00 0.00 0.00 3.06
120 121 2.165641 GACGTATGTCATGGGTCTGTGA 59.834 50.000 10.30 0.00 44.82 3.58
121 122 2.540515 GACGTATGTCATGGGTCTGTG 58.459 52.381 10.30 0.00 44.82 3.66
122 123 2.961526 GACGTATGTCATGGGTCTGT 57.038 50.000 10.30 0.00 44.82 3.41
132 133 2.733517 GCTTCCTAGCTGACGTATGTC 58.266 52.381 8.21 8.21 44.27 3.06
133 134 1.065701 CGCTTCCTAGCTGACGTATGT 59.934 52.381 0.00 0.00 45.51 2.29
134 135 1.065701 ACGCTTCCTAGCTGACGTATG 59.934 52.381 0.00 0.00 45.51 2.39
135 136 1.390565 ACGCTTCCTAGCTGACGTAT 58.609 50.000 0.00 0.00 45.51 3.06
136 137 1.171308 AACGCTTCCTAGCTGACGTA 58.829 50.000 0.00 0.00 45.51 3.57
137 138 0.317479 AAACGCTTCCTAGCTGACGT 59.683 50.000 0.00 0.00 45.51 4.34
138 139 1.918609 GTAAACGCTTCCTAGCTGACG 59.081 52.381 0.00 0.00 45.51 4.35
139 140 2.924290 CTGTAAACGCTTCCTAGCTGAC 59.076 50.000 0.00 0.00 45.51 3.51
140 141 2.561419 ACTGTAAACGCTTCCTAGCTGA 59.439 45.455 0.00 0.00 45.51 4.26
141 142 2.960819 ACTGTAAACGCTTCCTAGCTG 58.039 47.619 0.00 0.00 45.51 4.24
142 143 3.679824 AACTGTAAACGCTTCCTAGCT 57.320 42.857 0.00 0.00 45.51 3.32
143 144 4.492611 AGTAACTGTAAACGCTTCCTAGC 58.507 43.478 0.00 0.00 44.21 3.42
144 145 6.423001 ACAAAGTAACTGTAAACGCTTCCTAG 59.577 38.462 0.00 0.00 0.00 3.02
145 146 6.282930 ACAAAGTAACTGTAAACGCTTCCTA 58.717 36.000 0.00 0.00 0.00 2.94
146 147 5.121105 ACAAAGTAACTGTAAACGCTTCCT 58.879 37.500 0.00 0.00 0.00 3.36
147 148 5.006941 TGACAAAGTAACTGTAAACGCTTCC 59.993 40.000 0.00 0.00 0.00 3.46
148 149 6.039781 TGACAAAGTAACTGTAAACGCTTC 57.960 37.500 0.00 0.00 0.00 3.86
149 150 6.425577 TTGACAAAGTAACTGTAAACGCTT 57.574 33.333 0.00 0.00 0.00 4.68
150 151 6.482308 AGATTGACAAAGTAACTGTAAACGCT 59.518 34.615 0.00 0.00 0.00 5.07
151 152 6.656003 AGATTGACAAAGTAACTGTAAACGC 58.344 36.000 0.00 0.00 0.00 4.84
155 156 9.841295 AGGTAAAGATTGACAAAGTAACTGTAA 57.159 29.630 0.00 0.00 0.00 2.41
156 157 9.841295 AAGGTAAAGATTGACAAAGTAACTGTA 57.159 29.630 0.00 0.00 0.00 2.74
157 158 8.747538 AAGGTAAAGATTGACAAAGTAACTGT 57.252 30.769 0.00 0.00 0.00 3.55
158 159 9.450807 CAAAGGTAAAGATTGACAAAGTAACTG 57.549 33.333 0.00 0.00 0.00 3.16
159 160 9.403583 TCAAAGGTAAAGATTGACAAAGTAACT 57.596 29.630 0.00 0.00 0.00 2.24
162 163 9.349713 ACATCAAAGGTAAAGATTGACAAAGTA 57.650 29.630 0.00 0.00 36.03 2.24
163 164 8.237811 ACATCAAAGGTAAAGATTGACAAAGT 57.762 30.769 0.00 0.00 36.03 2.66
164 165 7.535258 CGACATCAAAGGTAAAGATTGACAAAG 59.465 37.037 0.00 0.00 36.03 2.77
165 166 7.012894 ACGACATCAAAGGTAAAGATTGACAAA 59.987 33.333 0.00 0.00 36.03 2.83
166 167 6.485313 ACGACATCAAAGGTAAAGATTGACAA 59.515 34.615 0.00 0.00 36.03 3.18
167 168 5.995282 ACGACATCAAAGGTAAAGATTGACA 59.005 36.000 0.00 0.00 36.03 3.58
168 169 6.481954 ACGACATCAAAGGTAAAGATTGAC 57.518 37.500 0.00 0.00 36.03 3.18
169 170 7.504924 AAACGACATCAAAGGTAAAGATTGA 57.495 32.000 0.00 0.00 37.47 2.57
170 171 6.519761 CGAAACGACATCAAAGGTAAAGATTG 59.480 38.462 0.00 0.00 0.00 2.67
171 172 6.348213 CCGAAACGACATCAAAGGTAAAGATT 60.348 38.462 0.00 0.00 0.00 2.40
172 173 5.121768 CCGAAACGACATCAAAGGTAAAGAT 59.878 40.000 0.00 0.00 0.00 2.40
173 174 4.449743 CCGAAACGACATCAAAGGTAAAGA 59.550 41.667 0.00 0.00 0.00 2.52
174 175 4.212636 ACCGAAACGACATCAAAGGTAAAG 59.787 41.667 0.00 0.00 0.00 1.85
175 176 4.128643 ACCGAAACGACATCAAAGGTAAA 58.871 39.130 0.00 0.00 0.00 2.01
176 177 3.731089 ACCGAAACGACATCAAAGGTAA 58.269 40.909 0.00 0.00 0.00 2.85
177 178 3.389925 ACCGAAACGACATCAAAGGTA 57.610 42.857 0.00 0.00 0.00 3.08
178 179 2.249844 ACCGAAACGACATCAAAGGT 57.750 45.000 0.00 0.00 0.00 3.50
179 180 3.000078 CGATACCGAAACGACATCAAAGG 60.000 47.826 0.00 0.00 38.22 3.11
180 181 3.541516 GCGATACCGAAACGACATCAAAG 60.542 47.826 0.00 0.00 38.22 2.77
181 182 2.346244 GCGATACCGAAACGACATCAAA 59.654 45.455 0.00 0.00 38.22 2.69
182 183 1.921887 GCGATACCGAAACGACATCAA 59.078 47.619 0.00 0.00 38.22 2.57
183 184 1.133598 AGCGATACCGAAACGACATCA 59.866 47.619 0.00 0.00 38.22 3.07
184 185 1.779724 GAGCGATACCGAAACGACATC 59.220 52.381 0.00 0.00 38.22 3.06
185 186 1.133598 TGAGCGATACCGAAACGACAT 59.866 47.619 0.00 0.00 38.22 3.06
186 187 0.522626 TGAGCGATACCGAAACGACA 59.477 50.000 0.00 0.00 38.22 4.35
187 188 1.621107 TTGAGCGATACCGAAACGAC 58.379 50.000 0.00 0.00 38.22 4.34
188 189 2.095110 TCTTTGAGCGATACCGAAACGA 60.095 45.455 0.00 0.00 38.22 3.85
189 190 2.256174 TCTTTGAGCGATACCGAAACG 58.744 47.619 0.00 0.00 38.22 3.60
190 191 3.924686 TCTTCTTTGAGCGATACCGAAAC 59.075 43.478 0.00 0.00 38.22 2.78
191 192 4.174009 CTCTTCTTTGAGCGATACCGAAA 58.826 43.478 0.00 0.00 38.22 3.46
192 193 3.428999 CCTCTTCTTTGAGCGATACCGAA 60.429 47.826 0.00 0.00 38.22 4.30
193 194 2.099263 CCTCTTCTTTGAGCGATACCGA 59.901 50.000 0.00 0.00 38.22 4.69
194 195 2.464865 CCTCTTCTTTGAGCGATACCG 58.535 52.381 0.00 0.00 39.16 4.02
195 196 2.168728 ACCCTCTTCTTTGAGCGATACC 59.831 50.000 0.00 0.00 33.02 2.73
196 197 3.190874 CACCCTCTTCTTTGAGCGATAC 58.809 50.000 0.00 0.00 33.02 2.24
197 198 2.832129 ACACCCTCTTCTTTGAGCGATA 59.168 45.455 0.00 0.00 33.02 2.92
198 199 1.625818 ACACCCTCTTCTTTGAGCGAT 59.374 47.619 0.00 0.00 33.02 4.58
199 200 1.048601 ACACCCTCTTCTTTGAGCGA 58.951 50.000 0.00 0.00 33.02 4.93
200 201 1.151668 CACACCCTCTTCTTTGAGCG 58.848 55.000 0.00 0.00 33.02 5.03
201 202 0.877743 GCACACCCTCTTCTTTGAGC 59.122 55.000 0.00 0.00 33.02 4.26
202 203 1.151668 CGCACACCCTCTTCTTTGAG 58.848 55.000 0.00 0.00 0.00 3.02
203 204 0.468226 ACGCACACCCTCTTCTTTGA 59.532 50.000 0.00 0.00 0.00 2.69
204 205 0.588252 CACGCACACCCTCTTCTTTG 59.412 55.000 0.00 0.00 0.00 2.77
205 206 0.180406 ACACGCACACCCTCTTCTTT 59.820 50.000 0.00 0.00 0.00 2.52
206 207 0.532862 CACACGCACACCCTCTTCTT 60.533 55.000 0.00 0.00 0.00 2.52
207 208 1.069765 CACACGCACACCCTCTTCT 59.930 57.895 0.00 0.00 0.00 2.85
208 209 1.227556 ACACACGCACACCCTCTTC 60.228 57.895 0.00 0.00 0.00 2.87
209 210 1.523711 CACACACGCACACCCTCTT 60.524 57.895 0.00 0.00 0.00 2.85
210 211 2.108976 CACACACGCACACCCTCT 59.891 61.111 0.00 0.00 0.00 3.69
211 212 1.772063 GAACACACACGCACACCCTC 61.772 60.000 0.00 0.00 0.00 4.30
212 213 1.817941 GAACACACACGCACACCCT 60.818 57.895 0.00 0.00 0.00 4.34
213 214 1.444119 ATGAACACACACGCACACCC 61.444 55.000 0.00 0.00 0.00 4.61
214 215 1.194547 CTATGAACACACACGCACACC 59.805 52.381 0.00 0.00 0.00 4.16
215 216 1.194547 CCTATGAACACACACGCACAC 59.805 52.381 0.00 0.00 0.00 3.82
216 217 1.507562 CCTATGAACACACACGCACA 58.492 50.000 0.00 0.00 0.00 4.57
217 218 0.796312 CCCTATGAACACACACGCAC 59.204 55.000 0.00 0.00 0.00 5.34
218 219 0.394938 ACCCTATGAACACACACGCA 59.605 50.000 0.00 0.00 0.00 5.24
219 220 1.196808 CAACCCTATGAACACACACGC 59.803 52.381 0.00 0.00 0.00 5.34
220 221 2.736721 CTCAACCCTATGAACACACACG 59.263 50.000 0.00 0.00 0.00 4.49
221 222 3.498397 CACTCAACCCTATGAACACACAC 59.502 47.826 0.00 0.00 0.00 3.82
222 223 3.135712 ACACTCAACCCTATGAACACACA 59.864 43.478 0.00 0.00 0.00 3.72
223 224 3.740115 ACACTCAACCCTATGAACACAC 58.260 45.455 0.00 0.00 0.00 3.82
224 225 5.012664 ACATACACTCAACCCTATGAACACA 59.987 40.000 0.00 0.00 0.00 3.72
225 226 5.351465 CACATACACTCAACCCTATGAACAC 59.649 44.000 0.00 0.00 0.00 3.32
226 227 5.012664 ACACATACACTCAACCCTATGAACA 59.987 40.000 0.00 0.00 0.00 3.18
227 228 5.351465 CACACATACACTCAACCCTATGAAC 59.649 44.000 0.00 0.00 0.00 3.18
228 229 5.012664 ACACACATACACTCAACCCTATGAA 59.987 40.000 0.00 0.00 0.00 2.57
229 230 4.530553 ACACACATACACTCAACCCTATGA 59.469 41.667 0.00 0.00 0.00 2.15
230 231 4.631377 CACACACATACACTCAACCCTATG 59.369 45.833 0.00 0.00 0.00 2.23
231 232 4.832248 CACACACATACACTCAACCCTAT 58.168 43.478 0.00 0.00 0.00 2.57
232 233 3.556213 GCACACACATACACTCAACCCTA 60.556 47.826 0.00 0.00 0.00 3.53
233 234 2.810400 GCACACACATACACTCAACCCT 60.810 50.000 0.00 0.00 0.00 4.34
234 235 1.535462 GCACACACATACACTCAACCC 59.465 52.381 0.00 0.00 0.00 4.11
235 236 1.194547 CGCACACACATACACTCAACC 59.805 52.381 0.00 0.00 0.00 3.77
236 237 1.398451 GCGCACACACATACACTCAAC 60.398 52.381 0.30 0.00 0.00 3.18
237 238 0.865111 GCGCACACACATACACTCAA 59.135 50.000 0.30 0.00 0.00 3.02
238 239 0.249657 TGCGCACACACATACACTCA 60.250 50.000 5.66 0.00 0.00 3.41
239 240 1.078709 ATGCGCACACACATACACTC 58.921 50.000 14.90 0.00 0.00 3.51
240 241 0.798159 CATGCGCACACACATACACT 59.202 50.000 14.90 0.00 0.00 3.55
241 242 0.516877 ACATGCGCACACACATACAC 59.483 50.000 14.90 0.00 0.00 2.90
242 243 0.516439 CACATGCGCACACACATACA 59.484 50.000 14.90 0.00 0.00 2.29
243 244 0.794229 GCACATGCGCACACACATAC 60.794 55.000 14.90 0.00 0.00 2.39
244 245 1.501292 GCACATGCGCACACACATA 59.499 52.632 14.90 0.00 0.00 2.29
245 246 2.256158 GCACATGCGCACACACAT 59.744 55.556 14.90 0.00 0.00 3.21
255 256 1.464608 ACACAGTACAATCGCACATGC 59.535 47.619 0.00 0.00 37.78 4.06
256 257 3.811722 AACACAGTACAATCGCACATG 57.188 42.857 0.00 0.00 0.00 3.21
257 258 4.201812 GCATAACACAGTACAATCGCACAT 60.202 41.667 0.00 0.00 0.00 3.21
258 259 3.124466 GCATAACACAGTACAATCGCACA 59.876 43.478 0.00 0.00 0.00 4.57
259 260 3.124466 TGCATAACACAGTACAATCGCAC 59.876 43.478 0.00 0.00 0.00 5.34
260 261 3.330267 TGCATAACACAGTACAATCGCA 58.670 40.909 0.00 0.00 0.00 5.10
261 262 4.092821 TCTTGCATAACACAGTACAATCGC 59.907 41.667 0.00 0.00 0.00 4.58
262 263 5.778161 TCTTGCATAACACAGTACAATCG 57.222 39.130 0.00 0.00 0.00 3.34
263 264 8.196802 TGTATCTTGCATAACACAGTACAATC 57.803 34.615 0.00 0.00 0.00 2.67
264 265 8.450964 GTTGTATCTTGCATAACACAGTACAAT 58.549 33.333 0.00 0.00 33.69 2.71
265 266 7.659799 AGTTGTATCTTGCATAACACAGTACAA 59.340 33.333 0.00 0.00 0.00 2.41
266 267 7.158697 AGTTGTATCTTGCATAACACAGTACA 58.841 34.615 0.00 0.00 0.00 2.90
267 268 7.596749 AGTTGTATCTTGCATAACACAGTAC 57.403 36.000 0.00 0.00 0.00 2.73
268 269 9.146984 GTTAGTTGTATCTTGCATAACACAGTA 57.853 33.333 0.00 0.00 0.00 2.74
269 270 7.659799 TGTTAGTTGTATCTTGCATAACACAGT 59.340 33.333 0.00 0.00 29.39 3.55
270 271 8.028540 TGTTAGTTGTATCTTGCATAACACAG 57.971 34.615 0.00 0.00 29.39 3.66
271 272 7.971183 TGTTAGTTGTATCTTGCATAACACA 57.029 32.000 0.00 0.00 29.39 3.72
272 273 8.450964 ACATGTTAGTTGTATCTTGCATAACAC 58.549 33.333 6.03 0.00 35.27 3.32
273 274 8.560355 ACATGTTAGTTGTATCTTGCATAACA 57.440 30.769 6.29 6.29 36.44 2.41
274 275 9.840427 AAACATGTTAGTTGTATCTTGCATAAC 57.160 29.630 12.39 0.00 0.00 1.89
305 306 9.275572 TCCTTAATAAACTATGTTAGTCCCACT 57.724 33.333 0.00 0.00 38.26 4.00
306 307 9.895138 TTCCTTAATAAACTATGTTAGTCCCAC 57.105 33.333 0.00 0.00 38.26 4.61
376 377 8.768979 TCCACATAAATTGGTCAACACAAGTGT 61.769 37.037 0.00 0.00 39.30 3.55
390 391 6.491062 TCATTCCTGGCTATCCACATAAATTG 59.509 38.462 0.00 0.00 37.47 2.32
404 416 1.377725 CCACGCTTCATTCCTGGCT 60.378 57.895 0.00 0.00 0.00 4.75
410 422 1.355971 TAGTTCGCCACGCTTCATTC 58.644 50.000 0.00 0.00 0.00 2.67
414 426 0.373716 CCAATAGTTCGCCACGCTTC 59.626 55.000 0.00 0.00 0.00 3.86
441 453 2.028130 ACGCTTTCATTTGTGGTTGGA 58.972 42.857 0.00 0.00 0.00 3.53
443 455 2.126467 CCACGCTTTCATTTGTGGTTG 58.874 47.619 2.15 0.00 45.34 3.77
455 467 0.530744 TCGATAGTCTGCCACGCTTT 59.469 50.000 0.00 0.00 37.40 3.51
474 486 2.124570 GCATGCTCGGTCCATGGT 60.125 61.111 12.58 0.00 40.24 3.55
524 540 2.914379 AAAAACTGAGTCCGGCGAG 58.086 52.632 9.30 0.00 0.00 5.03
544 562 4.041723 CGGCGAAAGTTTCAAAGACAAAT 58.958 39.130 15.67 0.00 0.00 2.32
546 564 2.223386 CCGGCGAAAGTTTCAAAGACAA 60.223 45.455 9.30 0.00 0.00 3.18
547 565 1.332375 CCGGCGAAAGTTTCAAAGACA 59.668 47.619 9.30 0.00 0.00 3.41
548 566 1.600485 TCCGGCGAAAGTTTCAAAGAC 59.400 47.619 9.30 0.89 0.00 3.01
692 1096 2.032302 CGTCGTGGATAGTGAGAGAAGG 59.968 54.545 0.00 0.00 0.00 3.46
694 1098 2.014857 CCGTCGTGGATAGTGAGAGAA 58.985 52.381 0.00 0.00 42.00 2.87
695 1099 1.664873 CCGTCGTGGATAGTGAGAGA 58.335 55.000 0.00 0.00 42.00 3.10
813 1229 2.202932 CCATTGGCGAGTCGGAGG 60.203 66.667 15.52 0.00 0.00 4.30
814 1230 1.811266 CACCATTGGCGAGTCGGAG 60.811 63.158 15.52 0.00 0.00 4.63
816 1232 2.819595 CCACCATTGGCGAGTCGG 60.820 66.667 15.52 0.00 35.56 4.79
837 1255 7.181125 GTGGTGTATTTATAGATGGAGGAGGAT 59.819 40.741 0.00 0.00 0.00 3.24
1062 1506 4.074526 TCCTGCTGCTCGTCCTGC 62.075 66.667 0.00 0.00 0.00 4.85
1064 1508 3.073735 CCTCCTGCTGCTCGTCCT 61.074 66.667 0.00 0.00 0.00 3.85
1568 2012 4.260132 CGAAATCGCTGAATCAAGAAGAGG 60.260 45.833 0.00 0.00 0.00 3.69
1570 2014 4.245660 ACGAAATCGCTGAATCAAGAAGA 58.754 39.130 2.15 0.00 44.43 2.87
1749 2243 9.105206 CGCGAGAGATTTCTAAGTAGTTATTAC 57.895 37.037 0.00 0.00 32.53 1.89
1750 2244 9.049523 TCGCGAGAGATTTCTAAGTAGTTATTA 57.950 33.333 3.71 0.00 32.53 0.98
1812 2306 5.450965 GGCAACCTCATCAATTCCATTGTAG 60.451 44.000 0.00 0.00 41.02 2.74
1813 2307 4.402155 GGCAACCTCATCAATTCCATTGTA 59.598 41.667 0.00 0.00 41.02 2.41
1814 2308 3.196254 GGCAACCTCATCAATTCCATTGT 59.804 43.478 0.00 0.00 41.02 2.71
1873 2402 3.362110 CGCGTGAAAAGAAGTTGAGACTC 60.362 47.826 0.00 0.00 34.21 3.36
1877 2406 3.319238 AACGCGTGAAAAGAAGTTGAG 57.681 42.857 14.98 0.00 0.00 3.02
1941 2475 3.967326 TCCAGACATCCCAATCGTCTAAT 59.033 43.478 0.00 0.00 37.92 1.73
1942 2476 3.371034 TCCAGACATCCCAATCGTCTAA 58.629 45.455 0.00 0.00 37.92 2.10
1943 2477 3.026707 TCCAGACATCCCAATCGTCTA 57.973 47.619 0.00 0.00 37.92 2.59
1944 2478 1.866015 TCCAGACATCCCAATCGTCT 58.134 50.000 0.00 0.00 40.60 4.18
1945 2479 2.366916 AGATCCAGACATCCCAATCGTC 59.633 50.000 0.00 0.00 0.00 4.20
1946 2480 2.103771 CAGATCCAGACATCCCAATCGT 59.896 50.000 0.00 0.00 0.00 3.73
1947 2481 2.103771 ACAGATCCAGACATCCCAATCG 59.896 50.000 0.00 0.00 0.00 3.34
2101 2646 4.971830 TCGTACTTAAATAATCCGAGCACG 59.028 41.667 0.00 0.00 39.43 5.34
2103 2648 6.978338 AGATCGTACTTAAATAATCCGAGCA 58.022 36.000 0.00 0.00 32.32 4.26
2122 2669 3.587923 CCTACTACCGGAGTCTAGATCG 58.412 54.545 9.46 0.90 39.81 3.69
2133 2680 1.825622 GTCCCGACCCTACTACCGG 60.826 68.421 0.00 0.00 41.47 5.28
2161 2708 4.409570 AGTACGCGGTATATATTTCAGCG 58.590 43.478 22.31 22.31 46.90 5.18
2178 2725 5.388944 AGAAAGCAGTAGAAACGTAGTACG 58.611 41.667 20.82 20.82 45.00 3.67
2181 2728 5.739358 AGCAAGAAAGCAGTAGAAACGTAGT 60.739 40.000 0.00 0.00 39.27 2.73
2195 2743 4.531332 CACTTCTACAACAGCAAGAAAGC 58.469 43.478 0.00 0.00 0.00 3.51
2199 2747 3.388024 ACTCCACTTCTACAACAGCAAGA 59.612 43.478 0.00 0.00 0.00 3.02
2201 2749 3.494398 GGACTCCACTTCTACAACAGCAA 60.494 47.826 0.00 0.00 0.00 3.91
2202 2750 2.037251 GGACTCCACTTCTACAACAGCA 59.963 50.000 0.00 0.00 0.00 4.41
2203 2751 2.300437 AGGACTCCACTTCTACAACAGC 59.700 50.000 0.00 0.00 0.00 4.40
2204 2752 3.322254 ACAGGACTCCACTTCTACAACAG 59.678 47.826 0.00 0.00 0.00 3.16
2205 2753 3.305720 ACAGGACTCCACTTCTACAACA 58.694 45.455 0.00 0.00 0.00 3.33
2206 2754 5.464030 TTACAGGACTCCACTTCTACAAC 57.536 43.478 0.00 0.00 0.00 3.32
2207 2755 5.510861 GCTTTACAGGACTCCACTTCTACAA 60.511 44.000 0.00 0.00 0.00 2.41
2208 2756 4.021368 GCTTTACAGGACTCCACTTCTACA 60.021 45.833 0.00 0.00 0.00 2.74
2212 2760 2.615747 GGGCTTTACAGGACTCCACTTC 60.616 54.545 0.00 0.00 0.00 3.01
2218 2766 2.418884 GCTACTGGGCTTTACAGGACTC 60.419 54.545 0.00 0.00 40.23 3.36
2222 2770 1.555075 TCAGCTACTGGGCTTTACAGG 59.445 52.381 0.00 0.00 41.00 4.00
2223 2771 3.334583 TTCAGCTACTGGGCTTTACAG 57.665 47.619 0.00 0.00 41.00 2.74
2230 2778 2.360165 CCATCAAATTCAGCTACTGGGC 59.640 50.000 0.00 0.00 31.51 5.36
2232 2780 3.379372 CACCCATCAAATTCAGCTACTGG 59.621 47.826 0.00 0.00 31.51 4.00
2235 2783 2.754552 TGCACCCATCAAATTCAGCTAC 59.245 45.455 0.00 0.00 0.00 3.58
2250 2798 1.686052 TGAATTTCAACTGGTGCACCC 59.314 47.619 32.62 15.42 34.29 4.61
2255 2803 4.393062 ACGCTATCTGAATTTCAACTGGTG 59.607 41.667 0.01 2.69 0.00 4.17
2257 2805 4.728882 GCACGCTATCTGAATTTCAACTGG 60.729 45.833 0.01 0.00 0.00 4.00
2309 2860 0.255890 TTTCCACCCTCAGGCATAGC 59.744 55.000 0.00 0.00 36.11 2.97
2312 2863 2.043526 AGAAATTTCCACCCTCAGGCAT 59.956 45.455 14.61 0.00 36.11 4.40
2315 2866 3.270877 CGTAGAAATTTCCACCCTCAGG 58.729 50.000 14.61 0.00 40.04 3.86
2316 2867 3.270877 CCGTAGAAATTTCCACCCTCAG 58.729 50.000 14.61 0.00 0.00 3.35
2317 2868 2.640826 ACCGTAGAAATTTCCACCCTCA 59.359 45.455 14.61 0.00 0.00 3.86
2385 2936 4.659172 TGCAGGGCCCGTTTGGAG 62.659 66.667 18.44 2.60 37.49 3.86
2456 3009 0.417437 TCAGGTCCTGGAATCTCCCA 59.583 55.000 19.11 0.00 35.03 4.37
2458 3013 2.105649 GGATTCAGGTCCTGGAATCTCC 59.894 54.545 26.34 17.70 35.32 3.71
2477 3032 3.556999 CCAGAGAAGACTATTCGGAGGA 58.443 50.000 0.00 0.00 0.00 3.71
2505 3060 1.174078 TTCGACACCGAGCACCACTA 61.174 55.000 0.00 0.00 46.39 2.74
2506 3061 2.023414 TTTCGACACCGAGCACCACT 62.023 55.000 0.00 0.00 46.39 4.00
2516 3071 3.319755 TCGGTAAGAATGTTTCGACACC 58.680 45.455 0.00 0.00 34.02 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.