Multiple sequence alignment - TraesCS3D01G483800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G483800 chr3D 100.000 2201 0 0 1 2201 581041744 581039544 0.000000e+00 4065
1 TraesCS3D01G483800 chr3D 97.898 1808 27 5 402 2201 589258597 589260401 0.000000e+00 3118
2 TraesCS3D01G483800 chr3D 98.964 193 2 0 208 400 501830381 501830189 1.620000e-91 346
3 TraesCS3D01G483800 chr2A 98.119 1808 24 5 402 2201 726901524 726903329 0.000000e+00 3142
4 TraesCS3D01G483800 chr3B 97.732 1808 31 5 402 2201 201569856 201571661 0.000000e+00 3103
5 TraesCS3D01G483800 chr3B 98.964 193 2 0 208 400 101916225 101916033 1.620000e-91 346
6 TraesCS3D01G483800 chr2D 97.622 1808 29 9 402 2201 272807319 272809120 0.000000e+00 3088
7 TraesCS3D01G483800 chr2D 96.135 207 8 0 1 207 297084731 297084525 2.710000e-89 339
8 TraesCS3D01G483800 chr2D 95.283 212 9 1 1 212 83684064 83683854 3.500000e-88 335
9 TraesCS3D01G483800 chr2D 95.283 212 9 1 1 212 554062681 554062891 3.500000e-88 335
10 TraesCS3D01G483800 chr7B 97.566 1808 33 6 402 2201 662731844 662730040 0.000000e+00 3085
11 TraesCS3D01G483800 chr7B 97.511 1808 34 6 402 2201 663094495 663096299 0.000000e+00 3079
12 TraesCS3D01G483800 chr5D 97.566 1808 33 6 402 2201 503250201 503248397 0.000000e+00 3085
13 TraesCS3D01G483800 chr5D 98.446 193 3 0 208 400 432398809 432399001 7.530000e-90 340
14 TraesCS3D01G483800 chr5D 94.811 212 10 1 1 212 210314514 210314724 1.630000e-86 329
15 TraesCS3D01G483800 chr7A 97.511 1808 34 5 402 2201 258305883 258307687 0.000000e+00 3079
16 TraesCS3D01G483800 chr1D 97.400 1808 37 5 402 2201 254530537 254528732 0.000000e+00 3070
17 TraesCS3D01G483800 chr6D 98.964 193 2 0 208 400 168262715 168262523 1.620000e-91 346
18 TraesCS3D01G483800 chr6D 98.446 193 3 0 208 400 135459401 135459593 7.530000e-90 340
19 TraesCS3D01G483800 chr6D 96.117 206 8 0 1 206 173509260 173509055 9.740000e-89 337
20 TraesCS3D01G483800 chr6D 94.811 212 10 1 1 212 88253750 88253960 1.630000e-86 329
21 TraesCS3D01G483800 chr6A 98.964 193 2 0 208 400 84401548 84401356 1.620000e-91 346
22 TraesCS3D01G483800 chr4A 98.964 193 2 0 208 400 583863058 583863250 1.620000e-91 346
23 TraesCS3D01G483800 chr4B 98.446 193 3 0 208 400 209114521 209114713 7.530000e-90 340
24 TraesCS3D01G483800 chr4B 98.446 193 3 0 208 400 495580251 495580059 7.530000e-90 340
25 TraesCS3D01G483800 chr7D 96.117 206 7 1 1 206 8788555 8788351 3.500000e-88 335
26 TraesCS3D01G483800 chr7D 95.283 212 9 1 1 212 233497091 233497301 3.500000e-88 335
27 TraesCS3D01G483800 chr4D 95.283 212 9 1 1 212 260266682 260266892 3.500000e-88 335


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G483800 chr3D 581039544 581041744 2200 True 4065 4065 100.000 1 2201 1 chr3D.!!$R2 2200
1 TraesCS3D01G483800 chr3D 589258597 589260401 1804 False 3118 3118 97.898 402 2201 1 chr3D.!!$F1 1799
2 TraesCS3D01G483800 chr2A 726901524 726903329 1805 False 3142 3142 98.119 402 2201 1 chr2A.!!$F1 1799
3 TraesCS3D01G483800 chr3B 201569856 201571661 1805 False 3103 3103 97.732 402 2201 1 chr3B.!!$F1 1799
4 TraesCS3D01G483800 chr2D 272807319 272809120 1801 False 3088 3088 97.622 402 2201 1 chr2D.!!$F1 1799
5 TraesCS3D01G483800 chr7B 662730040 662731844 1804 True 3085 3085 97.566 402 2201 1 chr7B.!!$R1 1799
6 TraesCS3D01G483800 chr7B 663094495 663096299 1804 False 3079 3079 97.511 402 2201 1 chr7B.!!$F1 1799
7 TraesCS3D01G483800 chr5D 503248397 503250201 1804 True 3085 3085 97.566 402 2201 1 chr5D.!!$R1 1799
8 TraesCS3D01G483800 chr7A 258305883 258307687 1804 False 3079 3079 97.511 402 2201 1 chr7A.!!$F1 1799
9 TraesCS3D01G483800 chr1D 254528732 254530537 1805 True 3070 3070 97.400 402 2201 1 chr1D.!!$R1 1799

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
226 227 0.033228 CTTAGGAGCCCTGCGAGATG 59.967 60.0 4.16 0.0 34.61 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1557 1567 1.007387 GGAGGCGTGCAAAGGTTTG 60.007 57.895 0.0 0.0 41.03 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.702478 TGGGTTGAGAGCTATGAGATGG 59.298 50.000 0.00 0.00 0.00 3.51
22 23 2.549778 GGGTTGAGAGCTATGAGATGGC 60.550 54.545 0.00 0.00 36.97 4.40
23 24 2.402305 GTTGAGAGCTATGAGATGGCG 58.598 52.381 0.00 0.00 42.13 5.69
24 25 1.986882 TGAGAGCTATGAGATGGCGA 58.013 50.000 0.00 0.00 42.13 5.54
25 26 2.523245 TGAGAGCTATGAGATGGCGAT 58.477 47.619 0.00 0.00 42.13 4.58
26 27 2.230750 TGAGAGCTATGAGATGGCGATG 59.769 50.000 0.00 0.00 42.13 3.84
27 28 1.549620 AGAGCTATGAGATGGCGATGG 59.450 52.381 0.00 0.00 42.13 3.51
28 29 1.547820 GAGCTATGAGATGGCGATGGA 59.452 52.381 0.00 0.00 42.13 3.41
29 30 1.973515 AGCTATGAGATGGCGATGGAA 59.026 47.619 0.00 0.00 42.13 3.53
30 31 2.369860 AGCTATGAGATGGCGATGGAAA 59.630 45.455 0.00 0.00 42.13 3.13
31 32 3.008813 AGCTATGAGATGGCGATGGAAAT 59.991 43.478 0.00 0.00 42.13 2.17
32 33 3.126514 GCTATGAGATGGCGATGGAAATG 59.873 47.826 0.00 0.00 0.00 2.32
33 34 1.311859 TGAGATGGCGATGGAAATGC 58.688 50.000 0.00 0.00 0.00 3.56
34 35 1.134007 TGAGATGGCGATGGAAATGCT 60.134 47.619 0.00 0.00 0.00 3.79
35 36 1.266175 GAGATGGCGATGGAAATGCTG 59.734 52.381 0.00 0.00 0.00 4.41
36 37 0.313043 GATGGCGATGGAAATGCTGG 59.687 55.000 0.00 0.00 0.00 4.85
37 38 0.106569 ATGGCGATGGAAATGCTGGA 60.107 50.000 0.00 0.00 0.00 3.86
38 39 0.106569 TGGCGATGGAAATGCTGGAT 60.107 50.000 0.00 0.00 0.00 3.41
39 40 0.313043 GGCGATGGAAATGCTGGATG 59.687 55.000 0.00 0.00 0.00 3.51
40 41 1.027357 GCGATGGAAATGCTGGATGT 58.973 50.000 0.00 0.00 0.00 3.06
41 42 1.268896 GCGATGGAAATGCTGGATGTG 60.269 52.381 0.00 0.00 0.00 3.21
42 43 1.335810 CGATGGAAATGCTGGATGTGG 59.664 52.381 0.00 0.00 0.00 4.17
43 44 2.658285 GATGGAAATGCTGGATGTGGA 58.342 47.619 0.00 0.00 0.00 4.02
44 45 1.838112 TGGAAATGCTGGATGTGGAC 58.162 50.000 0.00 0.00 0.00 4.02
45 46 0.734889 GGAAATGCTGGATGTGGACG 59.265 55.000 0.00 0.00 0.00 4.79
46 47 1.678728 GGAAATGCTGGATGTGGACGA 60.679 52.381 0.00 0.00 0.00 4.20
47 48 1.667724 GAAATGCTGGATGTGGACGAG 59.332 52.381 0.00 0.00 0.00 4.18
48 49 0.107508 AATGCTGGATGTGGACGAGG 60.108 55.000 0.00 0.00 0.00 4.63
49 50 2.512515 GCTGGATGTGGACGAGGC 60.513 66.667 0.00 0.00 0.00 4.70
50 51 2.202797 CTGGATGTGGACGAGGCG 60.203 66.667 0.00 0.00 0.00 5.52
51 52 3.723235 CTGGATGTGGACGAGGCGG 62.723 68.421 0.00 0.00 0.00 6.13
53 54 4.451150 GATGTGGACGAGGCGGCA 62.451 66.667 13.08 0.00 36.10 5.69
54 55 3.740128 GATGTGGACGAGGCGGCAT 62.740 63.158 13.08 0.00 36.10 4.40
55 56 4.758251 TGTGGACGAGGCGGCATG 62.758 66.667 13.08 5.18 36.10 4.06
56 57 4.760047 GTGGACGAGGCGGCATGT 62.760 66.667 13.08 9.05 36.10 3.21
57 58 4.758251 TGGACGAGGCGGCATGTG 62.758 66.667 13.08 0.00 36.10 3.21
60 61 3.716539 GACGAGGCGGCATGTGCTA 62.717 63.158 13.08 0.00 41.70 3.49
61 62 2.511373 CGAGGCGGCATGTGCTAA 60.511 61.111 13.08 0.00 41.70 3.09
62 63 2.106074 CGAGGCGGCATGTGCTAAA 61.106 57.895 13.08 0.00 41.70 1.85
63 64 1.439353 CGAGGCGGCATGTGCTAAAT 61.439 55.000 13.08 0.00 41.70 1.40
64 65 1.593196 GAGGCGGCATGTGCTAAATA 58.407 50.000 13.08 0.00 41.70 1.40
65 66 1.264288 GAGGCGGCATGTGCTAAATAC 59.736 52.381 13.08 0.00 41.70 1.89
66 67 1.134098 AGGCGGCATGTGCTAAATACT 60.134 47.619 13.08 0.00 41.70 2.12
67 68 1.676006 GGCGGCATGTGCTAAATACTT 59.324 47.619 3.07 0.00 41.70 2.24
68 69 2.287009 GGCGGCATGTGCTAAATACTTC 60.287 50.000 3.07 0.00 41.70 3.01
69 70 2.354510 GCGGCATGTGCTAAATACTTCA 59.645 45.455 4.84 0.00 41.70 3.02
70 71 3.788797 GCGGCATGTGCTAAATACTTCAC 60.789 47.826 4.84 0.00 41.70 3.18
71 72 3.242739 CGGCATGTGCTAAATACTTCACC 60.243 47.826 4.84 0.00 41.70 4.02
72 73 3.694072 GGCATGTGCTAAATACTTCACCA 59.306 43.478 4.84 0.00 41.70 4.17
73 74 4.339247 GGCATGTGCTAAATACTTCACCAT 59.661 41.667 4.84 0.00 41.70 3.55
74 75 5.276270 GCATGTGCTAAATACTTCACCATG 58.724 41.667 0.00 0.00 38.21 3.66
75 76 5.066375 GCATGTGCTAAATACTTCACCATGA 59.934 40.000 0.00 0.00 38.21 3.07
76 77 6.238842 GCATGTGCTAAATACTTCACCATGAT 60.239 38.462 0.00 0.00 38.21 2.45
77 78 6.682423 TGTGCTAAATACTTCACCATGATG 57.318 37.500 0.00 0.00 0.00 3.07
78 79 6.179756 TGTGCTAAATACTTCACCATGATGT 58.820 36.000 0.00 3.26 38.20 3.06
79 80 6.658816 TGTGCTAAATACTTCACCATGATGTT 59.341 34.615 0.00 0.00 36.38 2.71
80 81 6.968904 GTGCTAAATACTTCACCATGATGTTG 59.031 38.462 0.00 0.00 36.38 3.33
81 82 6.095300 TGCTAAATACTTCACCATGATGTTGG 59.905 38.462 0.00 0.00 42.82 3.77
82 83 6.318648 GCTAAATACTTCACCATGATGTTGGA 59.681 38.462 0.00 0.00 39.25 3.53
83 84 7.148086 GCTAAATACTTCACCATGATGTTGGAA 60.148 37.037 0.00 0.00 39.25 3.53
84 85 6.764308 AATACTTCACCATGATGTTGGAAG 57.236 37.500 13.10 13.10 39.25 3.46
85 86 3.424703 ACTTCACCATGATGTTGGAAGG 58.575 45.455 16.76 0.00 39.25 3.46
86 87 3.074390 ACTTCACCATGATGTTGGAAGGA 59.926 43.478 16.76 0.00 39.25 3.36
87 88 3.805066 TCACCATGATGTTGGAAGGAA 57.195 42.857 0.00 0.00 39.25 3.36
88 89 3.420893 TCACCATGATGTTGGAAGGAAC 58.579 45.455 0.00 0.00 39.25 3.62
89 90 3.156293 CACCATGATGTTGGAAGGAACA 58.844 45.455 0.00 0.00 39.25 3.18
90 91 3.192001 CACCATGATGTTGGAAGGAACAG 59.808 47.826 0.00 0.00 39.18 3.16
91 92 2.165030 CCATGATGTTGGAAGGAACAGC 59.835 50.000 0.00 0.00 41.60 4.40
92 93 2.957402 TGATGTTGGAAGGAACAGCT 57.043 45.000 0.00 0.00 41.74 4.24
93 94 2.783135 TGATGTTGGAAGGAACAGCTC 58.217 47.619 0.00 0.00 41.74 4.09
94 95 1.734465 GATGTTGGAAGGAACAGCTCG 59.266 52.381 0.00 0.00 38.83 5.03
95 96 0.468226 TGTTGGAAGGAACAGCTCGT 59.532 50.000 0.00 0.00 32.05 4.18
96 97 1.689813 TGTTGGAAGGAACAGCTCGTA 59.310 47.619 0.00 0.00 32.05 3.43
97 98 2.067013 GTTGGAAGGAACAGCTCGTAC 58.933 52.381 0.00 0.00 0.00 3.67
98 99 1.629043 TGGAAGGAACAGCTCGTACT 58.371 50.000 0.00 0.00 0.00 2.73
99 100 1.968493 TGGAAGGAACAGCTCGTACTT 59.032 47.619 0.00 0.00 0.00 2.24
100 101 2.288825 TGGAAGGAACAGCTCGTACTTG 60.289 50.000 0.00 0.00 0.00 3.16
101 102 2.338500 GAAGGAACAGCTCGTACTTGG 58.662 52.381 0.00 0.00 0.00 3.61
102 103 0.037232 AGGAACAGCTCGTACTTGGC 60.037 55.000 0.00 0.00 0.00 4.52
103 104 0.037232 GGAACAGCTCGTACTTGGCT 60.037 55.000 0.00 0.00 36.70 4.75
108 109 2.543777 AGCTCGTACTTGGCTGAAAA 57.456 45.000 3.86 0.00 34.82 2.29
109 110 2.417719 AGCTCGTACTTGGCTGAAAAG 58.582 47.619 3.86 0.00 34.82 2.27
110 111 2.143925 GCTCGTACTTGGCTGAAAAGT 58.856 47.619 0.00 0.00 40.82 2.66
111 112 2.548480 GCTCGTACTTGGCTGAAAAGTT 59.452 45.455 1.52 0.00 38.73 2.66
112 113 3.003378 GCTCGTACTTGGCTGAAAAGTTT 59.997 43.478 1.52 0.00 38.73 2.66
113 114 4.527564 CTCGTACTTGGCTGAAAAGTTTG 58.472 43.478 0.00 0.00 38.73 2.93
114 115 3.042887 CGTACTTGGCTGAAAAGTTTGC 58.957 45.455 0.00 0.00 38.73 3.68
115 116 2.602257 ACTTGGCTGAAAAGTTTGCC 57.398 45.000 8.20 8.20 45.10 4.52
119 120 3.974222 GCTGAAAAGTTTGCCAGCT 57.026 47.368 24.57 0.00 46.04 4.24
121 122 3.369546 GCTGAAAAGTTTGCCAGCTAA 57.630 42.857 24.57 0.00 46.04 3.09
122 123 3.052745 GCTGAAAAGTTTGCCAGCTAAC 58.947 45.455 24.57 8.61 46.04 2.34
123 124 3.243535 GCTGAAAAGTTTGCCAGCTAACT 60.244 43.478 24.57 12.69 46.04 2.24
124 125 4.540824 CTGAAAAGTTTGCCAGCTAACTC 58.459 43.478 17.55 8.33 40.10 3.01
125 126 3.317993 TGAAAAGTTTGCCAGCTAACTCC 59.682 43.478 17.55 11.43 40.10 3.85
126 127 2.656947 AAGTTTGCCAGCTAACTCCA 57.343 45.000 17.55 0.00 40.10 3.86
127 128 2.887151 AGTTTGCCAGCTAACTCCAT 57.113 45.000 12.69 0.00 37.42 3.41
128 129 3.160679 AGTTTGCCAGCTAACTCCATT 57.839 42.857 12.69 0.00 37.42 3.16
129 130 2.821969 AGTTTGCCAGCTAACTCCATTG 59.178 45.455 12.69 0.00 37.42 2.82
130 131 1.838112 TTGCCAGCTAACTCCATTGG 58.162 50.000 0.00 0.00 0.00 3.16
131 132 0.991146 TGCCAGCTAACTCCATTGGA 59.009 50.000 5.05 5.05 0.00 3.53
132 133 1.565759 TGCCAGCTAACTCCATTGGAT 59.434 47.619 5.70 0.00 0.00 3.41
133 134 2.225467 GCCAGCTAACTCCATTGGATC 58.775 52.381 5.70 0.00 0.00 3.36
134 135 2.421952 GCCAGCTAACTCCATTGGATCA 60.422 50.000 5.70 0.00 0.00 2.92
135 136 3.749954 GCCAGCTAACTCCATTGGATCAT 60.750 47.826 5.70 0.00 0.00 2.45
136 137 3.819337 CCAGCTAACTCCATTGGATCATG 59.181 47.826 5.70 0.00 0.00 3.07
137 138 3.819337 CAGCTAACTCCATTGGATCATGG 59.181 47.826 5.70 5.83 39.25 3.66
138 139 3.152341 GCTAACTCCATTGGATCATGGG 58.848 50.000 5.70 5.87 38.45 4.00
139 140 2.077687 AACTCCATTGGATCATGGGC 57.922 50.000 5.70 0.00 38.45 5.36
140 141 0.186873 ACTCCATTGGATCATGGGCC 59.813 55.000 5.70 0.00 38.45 5.80
141 142 0.892358 CTCCATTGGATCATGGGCCG 60.892 60.000 5.70 0.00 38.45 6.13
142 143 1.151221 CCATTGGATCATGGGCCGA 59.849 57.895 0.00 0.00 34.39 5.54
143 144 0.892358 CCATTGGATCATGGGCCGAG 60.892 60.000 0.00 0.00 34.39 4.63
144 145 0.179009 CATTGGATCATGGGCCGAGT 60.179 55.000 0.00 0.00 0.00 4.18
145 146 0.552848 ATTGGATCATGGGCCGAGTT 59.447 50.000 0.00 0.00 0.00 3.01
146 147 1.208706 TTGGATCATGGGCCGAGTTA 58.791 50.000 0.00 0.00 0.00 2.24
147 148 1.208706 TGGATCATGGGCCGAGTTAA 58.791 50.000 0.00 0.00 0.00 2.01
148 149 1.562008 TGGATCATGGGCCGAGTTAAA 59.438 47.619 0.00 0.00 0.00 1.52
149 150 2.222027 GGATCATGGGCCGAGTTAAAG 58.778 52.381 0.00 0.00 0.00 1.85
150 151 2.222027 GATCATGGGCCGAGTTAAAGG 58.778 52.381 0.00 0.00 0.00 3.11
156 157 2.666812 CCGAGTTAAAGGCCCGGT 59.333 61.111 0.00 0.00 35.83 5.28
157 158 1.002990 CCGAGTTAAAGGCCCGGTT 60.003 57.895 0.00 0.00 35.83 4.44
158 159 0.607217 CCGAGTTAAAGGCCCGGTTT 60.607 55.000 0.00 0.00 35.83 3.27
159 160 0.519961 CGAGTTAAAGGCCCGGTTTG 59.480 55.000 0.00 0.00 0.00 2.93
160 161 1.612676 GAGTTAAAGGCCCGGTTTGT 58.387 50.000 0.00 0.00 0.00 2.83
161 162 1.538512 GAGTTAAAGGCCCGGTTTGTC 59.461 52.381 0.00 0.00 0.00 3.18
162 163 0.599558 GTTAAAGGCCCGGTTTGTCC 59.400 55.000 0.00 0.00 0.00 4.02
163 164 0.185416 TTAAAGGCCCGGTTTGTCCA 59.815 50.000 0.00 0.00 35.57 4.02
164 165 0.250989 TAAAGGCCCGGTTTGTCCAG 60.251 55.000 0.00 0.00 35.57 3.86
165 166 2.002018 AAAGGCCCGGTTTGTCCAGA 62.002 55.000 0.00 0.00 35.57 3.86
166 167 2.002018 AAGGCCCGGTTTGTCCAGAA 62.002 55.000 0.00 0.00 35.57 3.02
167 168 1.304134 GGCCCGGTTTGTCCAGAAT 60.304 57.895 0.00 0.00 35.57 2.40
168 169 0.898326 GGCCCGGTTTGTCCAGAATT 60.898 55.000 0.00 0.00 35.57 2.17
169 170 0.966179 GCCCGGTTTGTCCAGAATTT 59.034 50.000 0.00 0.00 35.57 1.82
170 171 1.336795 GCCCGGTTTGTCCAGAATTTG 60.337 52.381 0.00 0.00 35.57 2.32
171 172 2.235016 CCCGGTTTGTCCAGAATTTGA 58.765 47.619 0.00 0.00 35.57 2.69
172 173 2.625790 CCCGGTTTGTCCAGAATTTGAA 59.374 45.455 0.00 0.00 35.57 2.69
173 174 3.305335 CCCGGTTTGTCCAGAATTTGAAG 60.305 47.826 0.00 0.00 35.57 3.02
174 175 3.305335 CCGGTTTGTCCAGAATTTGAAGG 60.305 47.826 0.00 0.00 35.57 3.46
175 176 3.568007 CGGTTTGTCCAGAATTTGAAGGA 59.432 43.478 0.00 0.00 35.57 3.36
180 181 3.485463 TCCAGAATTTGAAGGACACGT 57.515 42.857 0.00 0.00 0.00 4.49
181 182 3.138304 TCCAGAATTTGAAGGACACGTG 58.862 45.455 15.48 15.48 0.00 4.49
182 183 2.350772 CCAGAATTTGAAGGACACGTGC 60.351 50.000 17.22 8.51 0.00 5.34
183 184 2.290367 CAGAATTTGAAGGACACGTGCA 59.710 45.455 17.22 1.47 0.00 4.57
184 185 2.948979 AGAATTTGAAGGACACGTGCAA 59.051 40.909 17.22 8.50 0.00 4.08
185 186 3.003689 AGAATTTGAAGGACACGTGCAAG 59.996 43.478 17.22 0.00 0.00 4.01
186 187 0.380378 TTTGAAGGACACGTGCAAGC 59.620 50.000 17.22 2.42 0.00 4.01
187 188 0.746204 TTGAAGGACACGTGCAAGCA 60.746 50.000 17.22 5.01 0.00 3.91
188 189 1.159713 TGAAGGACACGTGCAAGCAG 61.160 55.000 17.22 0.00 0.00 4.24
189 190 2.449556 GAAGGACACGTGCAAGCAGC 62.450 60.000 17.22 0.00 45.96 5.25
190 191 4.030452 GGACACGTGCAAGCAGCC 62.030 66.667 17.22 2.12 44.83 4.85
191 192 4.030452 GACACGTGCAAGCAGCCC 62.030 66.667 17.22 0.00 44.83 5.19
192 193 4.873810 ACACGTGCAAGCAGCCCA 62.874 61.111 17.22 0.00 44.83 5.36
193 194 3.367743 CACGTGCAAGCAGCCCAT 61.368 61.111 0.82 0.00 44.83 4.00
194 195 3.367743 ACGTGCAAGCAGCCCATG 61.368 61.111 0.00 0.00 44.83 3.66
195 196 3.367743 CGTGCAAGCAGCCCATGT 61.368 61.111 0.00 0.00 44.83 3.21
196 197 2.570181 GTGCAAGCAGCCCATGTC 59.430 61.111 0.00 0.00 44.83 3.06
197 198 2.115695 TGCAAGCAGCCCATGTCA 59.884 55.556 0.00 0.00 44.83 3.58
198 199 1.531128 TGCAAGCAGCCCATGTCAA 60.531 52.632 0.00 0.00 44.83 3.18
199 200 0.901114 TGCAAGCAGCCCATGTCAAT 60.901 50.000 0.00 0.00 44.83 2.57
200 201 0.248289 GCAAGCAGCCCATGTCAATT 59.752 50.000 0.00 0.00 37.23 2.32
201 202 2.004583 CAAGCAGCCCATGTCAATTG 57.995 50.000 0.00 0.00 0.00 2.32
202 203 1.274167 CAAGCAGCCCATGTCAATTGT 59.726 47.619 5.13 0.00 0.00 2.71
203 204 0.892755 AGCAGCCCATGTCAATTGTG 59.107 50.000 5.13 0.00 0.00 3.33
204 205 0.108520 GCAGCCCATGTCAATTGTGG 60.109 55.000 5.13 5.98 0.00 4.17
205 206 1.548081 CAGCCCATGTCAATTGTGGA 58.452 50.000 13.71 0.00 34.94 4.02
206 207 1.203052 CAGCCCATGTCAATTGTGGAC 59.797 52.381 13.71 3.83 34.94 4.02
207 208 0.532115 GCCCATGTCAATTGTGGACC 59.468 55.000 13.71 2.86 34.94 4.46
208 209 1.892329 GCCCATGTCAATTGTGGACCT 60.892 52.381 13.71 0.00 34.94 3.85
209 210 2.528564 CCCATGTCAATTGTGGACCTT 58.471 47.619 13.71 0.00 34.94 3.50
210 211 3.696045 CCCATGTCAATTGTGGACCTTA 58.304 45.455 13.71 0.00 34.94 2.69
211 212 3.696051 CCCATGTCAATTGTGGACCTTAG 59.304 47.826 13.71 0.00 34.94 2.18
212 213 3.696051 CCATGTCAATTGTGGACCTTAGG 59.304 47.826 7.63 0.00 34.94 2.69
213 214 4.567537 CCATGTCAATTGTGGACCTTAGGA 60.568 45.833 4.77 0.00 34.94 2.94
214 215 4.286297 TGTCAATTGTGGACCTTAGGAG 57.714 45.455 4.77 0.00 34.36 3.69
215 216 3.010420 GTCAATTGTGGACCTTAGGAGC 58.990 50.000 4.77 0.00 0.00 4.70
216 217 2.026262 TCAATTGTGGACCTTAGGAGCC 60.026 50.000 4.77 6.63 0.00 4.70
217 218 0.919710 ATTGTGGACCTTAGGAGCCC 59.080 55.000 4.77 3.71 0.00 5.19
218 219 0.178873 TTGTGGACCTTAGGAGCCCT 60.179 55.000 4.77 0.00 37.71 5.19
219 220 0.909610 TGTGGACCTTAGGAGCCCTG 60.910 60.000 4.77 0.00 34.61 4.45
220 221 1.995626 TGGACCTTAGGAGCCCTGC 60.996 63.158 4.77 0.00 34.61 4.85
221 222 2.501610 GACCTTAGGAGCCCTGCG 59.498 66.667 4.77 0.00 34.61 5.18
222 223 2.038975 ACCTTAGGAGCCCTGCGA 59.961 61.111 4.77 0.00 34.61 5.10
223 224 2.022240 GACCTTAGGAGCCCTGCGAG 62.022 65.000 4.77 0.74 34.61 5.03
224 225 1.758514 CCTTAGGAGCCCTGCGAGA 60.759 63.158 0.00 0.00 34.61 4.04
225 226 1.118356 CCTTAGGAGCCCTGCGAGAT 61.118 60.000 0.00 0.00 34.61 2.75
226 227 0.033228 CTTAGGAGCCCTGCGAGATG 59.967 60.000 4.16 0.00 34.61 2.90
227 228 0.397114 TTAGGAGCCCTGCGAGATGA 60.397 55.000 4.16 0.00 34.61 2.92
228 229 0.397114 TAGGAGCCCTGCGAGATGAA 60.397 55.000 4.16 0.00 34.61 2.57
229 230 1.221840 GGAGCCCTGCGAGATGAAA 59.778 57.895 0.00 0.00 0.00 2.69
230 231 0.813210 GGAGCCCTGCGAGATGAAAG 60.813 60.000 0.00 0.00 0.00 2.62
231 232 0.107945 GAGCCCTGCGAGATGAAAGT 60.108 55.000 0.00 0.00 0.00 2.66
232 233 0.107945 AGCCCTGCGAGATGAAAGTC 60.108 55.000 0.00 0.00 0.00 3.01
233 234 0.107945 GCCCTGCGAGATGAAAGTCT 60.108 55.000 0.00 0.00 0.00 3.24
234 235 1.933247 CCCTGCGAGATGAAAGTCTC 58.067 55.000 0.00 0.00 40.96 3.36
235 236 1.205655 CCCTGCGAGATGAAAGTCTCA 59.794 52.381 4.96 0.00 43.84 3.27
237 238 2.864946 CCTGCGAGATGAAAGTCTCATG 59.135 50.000 4.96 0.00 45.23 3.07
238 239 2.274437 TGCGAGATGAAAGTCTCATGC 58.726 47.619 4.96 1.87 45.23 4.06
239 240 2.274437 GCGAGATGAAAGTCTCATGCA 58.726 47.619 0.00 0.00 45.23 3.96
240 241 2.030213 GCGAGATGAAAGTCTCATGCAC 59.970 50.000 0.00 0.00 45.23 4.57
241 242 2.280971 CGAGATGAAAGTCTCATGCACG 59.719 50.000 0.00 0.00 45.23 5.34
242 243 2.606725 GAGATGAAAGTCTCATGCACGG 59.393 50.000 0.00 0.00 45.23 4.94
243 244 2.027745 AGATGAAAGTCTCATGCACGGT 60.028 45.455 0.00 0.00 45.23 4.83
244 245 2.254546 TGAAAGTCTCATGCACGGTT 57.745 45.000 0.00 0.00 0.00 4.44
245 246 2.571212 TGAAAGTCTCATGCACGGTTT 58.429 42.857 0.00 0.00 0.00 3.27
246 247 2.948979 TGAAAGTCTCATGCACGGTTTT 59.051 40.909 0.00 0.00 0.00 2.43
247 248 3.243035 TGAAAGTCTCATGCACGGTTTTG 60.243 43.478 0.00 0.00 0.00 2.44
248 249 0.593128 AGTCTCATGCACGGTTTTGC 59.407 50.000 0.00 0.00 43.31 3.68
255 256 3.389741 GCACGGTTTTGCATGAGAG 57.610 52.632 0.00 0.00 42.49 3.20
256 257 0.874390 GCACGGTTTTGCATGAGAGA 59.126 50.000 0.00 0.00 42.49 3.10
257 258 1.266718 GCACGGTTTTGCATGAGAGAA 59.733 47.619 0.00 0.00 42.49 2.87
258 259 2.287547 GCACGGTTTTGCATGAGAGAAA 60.288 45.455 0.00 0.00 42.49 2.52
259 260 3.558505 CACGGTTTTGCATGAGAGAAAG 58.441 45.455 0.00 0.00 0.00 2.62
260 261 3.250762 CACGGTTTTGCATGAGAGAAAGA 59.749 43.478 0.00 0.00 0.00 2.52
261 262 3.882888 ACGGTTTTGCATGAGAGAAAGAA 59.117 39.130 0.00 0.00 0.00 2.52
262 263 4.023707 ACGGTTTTGCATGAGAGAAAGAAG 60.024 41.667 0.00 0.00 0.00 2.85
263 264 4.233005 GGTTTTGCATGAGAGAAAGAAGC 58.767 43.478 0.00 0.00 0.00 3.86
264 265 3.818961 TTTGCATGAGAGAAAGAAGCG 57.181 42.857 0.00 0.00 0.00 4.68
265 266 2.749280 TGCATGAGAGAAAGAAGCGA 57.251 45.000 0.00 0.00 0.00 4.93
266 267 2.614779 TGCATGAGAGAAAGAAGCGAG 58.385 47.619 0.00 0.00 0.00 5.03
267 268 1.932511 GCATGAGAGAAAGAAGCGAGG 59.067 52.381 0.00 0.00 0.00 4.63
268 269 2.417924 GCATGAGAGAAAGAAGCGAGGA 60.418 50.000 0.00 0.00 0.00 3.71
269 270 3.854666 CATGAGAGAAAGAAGCGAGGAA 58.145 45.455 0.00 0.00 0.00 3.36
270 271 4.440880 CATGAGAGAAAGAAGCGAGGAAT 58.559 43.478 0.00 0.00 0.00 3.01
271 272 4.116747 TGAGAGAAAGAAGCGAGGAATC 57.883 45.455 0.00 0.00 0.00 2.52
272 273 3.118956 TGAGAGAAAGAAGCGAGGAATCC 60.119 47.826 0.00 0.00 0.00 3.01
273 274 3.103742 AGAGAAAGAAGCGAGGAATCCT 58.896 45.455 0.00 0.00 36.03 3.24
274 275 3.132111 AGAGAAAGAAGCGAGGAATCCTC 59.868 47.826 19.08 19.08 46.44 3.71
285 286 4.729227 GAGGAATCCTCTTTTCGACTCT 57.271 45.455 21.48 0.00 46.41 3.24
286 287 4.429108 GAGGAATCCTCTTTTCGACTCTG 58.571 47.826 21.48 0.00 46.41 3.35
287 288 4.090090 AGGAATCCTCTTTTCGACTCTGA 58.910 43.478 0.00 0.00 0.00 3.27
288 289 4.081917 AGGAATCCTCTTTTCGACTCTGAC 60.082 45.833 0.00 0.00 0.00 3.51
289 290 4.081917 GGAATCCTCTTTTCGACTCTGACT 60.082 45.833 0.00 0.00 0.00 3.41
290 291 4.712122 ATCCTCTTTTCGACTCTGACTC 57.288 45.455 0.00 0.00 0.00 3.36
291 292 2.820787 TCCTCTTTTCGACTCTGACTCC 59.179 50.000 0.00 0.00 0.00 3.85
292 293 2.094442 CCTCTTTTCGACTCTGACTCCC 60.094 54.545 0.00 0.00 0.00 4.30
293 294 1.893801 TCTTTTCGACTCTGACTCCCC 59.106 52.381 0.00 0.00 0.00 4.81
294 295 0.974383 TTTTCGACTCTGACTCCCCC 59.026 55.000 0.00 0.00 0.00 5.40
295 296 0.178944 TTTCGACTCTGACTCCCCCA 60.179 55.000 0.00 0.00 0.00 4.96
296 297 0.898789 TTCGACTCTGACTCCCCCAC 60.899 60.000 0.00 0.00 0.00 4.61
297 298 1.304547 CGACTCTGACTCCCCCACT 60.305 63.158 0.00 0.00 0.00 4.00
298 299 1.316706 CGACTCTGACTCCCCCACTC 61.317 65.000 0.00 0.00 0.00 3.51
299 300 0.973496 GACTCTGACTCCCCCACTCC 60.973 65.000 0.00 0.00 0.00 3.85
300 301 1.079256 CTCTGACTCCCCCACTCCA 59.921 63.158 0.00 0.00 0.00 3.86
301 302 0.975040 CTCTGACTCCCCCACTCCAG 60.975 65.000 0.00 0.00 0.00 3.86
302 303 1.229336 CTGACTCCCCCACTCCAGT 60.229 63.158 0.00 0.00 0.00 4.00
303 304 1.229209 TGACTCCCCCACTCCAGTC 60.229 63.158 0.00 0.00 36.57 3.51
304 305 2.283966 ACTCCCCCACTCCAGTCG 60.284 66.667 0.00 0.00 0.00 4.18
305 306 2.283966 CTCCCCCACTCCAGTCGT 60.284 66.667 0.00 0.00 0.00 4.34
306 307 1.913762 CTCCCCCACTCCAGTCGTT 60.914 63.158 0.00 0.00 0.00 3.85
307 308 2.172483 CTCCCCCACTCCAGTCGTTG 62.172 65.000 0.00 0.00 0.00 4.10
308 309 2.358737 CCCCACTCCAGTCGTTGC 60.359 66.667 0.00 0.00 0.00 4.17
309 310 2.743718 CCCACTCCAGTCGTTGCT 59.256 61.111 0.00 0.00 0.00 3.91
310 311 1.071471 CCCACTCCAGTCGTTGCTT 59.929 57.895 0.00 0.00 0.00 3.91
311 312 0.535102 CCCACTCCAGTCGTTGCTTT 60.535 55.000 0.00 0.00 0.00 3.51
312 313 1.308998 CCACTCCAGTCGTTGCTTTT 58.691 50.000 0.00 0.00 0.00 2.27
313 314 1.264288 CCACTCCAGTCGTTGCTTTTC 59.736 52.381 0.00 0.00 0.00 2.29
314 315 2.213499 CACTCCAGTCGTTGCTTTTCT 58.787 47.619 0.00 0.00 0.00 2.52
315 316 2.614057 CACTCCAGTCGTTGCTTTTCTT 59.386 45.455 0.00 0.00 0.00 2.52
316 317 3.065371 CACTCCAGTCGTTGCTTTTCTTT 59.935 43.478 0.00 0.00 0.00 2.52
317 318 3.312697 ACTCCAGTCGTTGCTTTTCTTTC 59.687 43.478 0.00 0.00 0.00 2.62
318 319 3.541632 TCCAGTCGTTGCTTTTCTTTCT 58.458 40.909 0.00 0.00 0.00 2.52
319 320 3.312421 TCCAGTCGTTGCTTTTCTTTCTG 59.688 43.478 0.00 0.00 0.00 3.02
320 321 3.065371 CCAGTCGTTGCTTTTCTTTCTGT 59.935 43.478 0.00 0.00 0.00 3.41
321 322 4.438744 CCAGTCGTTGCTTTTCTTTCTGTT 60.439 41.667 0.00 0.00 0.00 3.16
322 323 5.220777 CCAGTCGTTGCTTTTCTTTCTGTTA 60.221 40.000 0.00 0.00 0.00 2.41
323 324 5.677178 CAGTCGTTGCTTTTCTTTCTGTTAC 59.323 40.000 0.00 0.00 0.00 2.50
324 325 5.585047 AGTCGTTGCTTTTCTTTCTGTTACT 59.415 36.000 0.00 0.00 0.00 2.24
325 326 6.093633 AGTCGTTGCTTTTCTTTCTGTTACTT 59.906 34.615 0.00 0.00 0.00 2.24
326 327 6.411203 GTCGTTGCTTTTCTTTCTGTTACTTC 59.589 38.462 0.00 0.00 0.00 3.01
327 328 5.392585 CGTTGCTTTTCTTTCTGTTACTTCG 59.607 40.000 0.00 0.00 0.00 3.79
328 329 6.483687 GTTGCTTTTCTTTCTGTTACTTCGA 58.516 36.000 0.00 0.00 0.00 3.71
329 330 6.671614 TGCTTTTCTTTCTGTTACTTCGAA 57.328 33.333 0.00 0.00 0.00 3.71
330 331 7.079182 TGCTTTTCTTTCTGTTACTTCGAAA 57.921 32.000 0.00 0.00 0.00 3.46
331 332 7.186804 TGCTTTTCTTTCTGTTACTTCGAAAG 58.813 34.615 0.00 12.50 42.94 2.62
332 333 7.148306 TGCTTTTCTTTCTGTTACTTCGAAAGT 60.148 33.333 15.76 2.45 42.46 2.66
333 334 8.333186 GCTTTTCTTTCTGTTACTTCGAAAGTA 58.667 33.333 15.76 1.45 42.46 2.24
334 335 9.851043 CTTTTCTTTCTGTTACTTCGAAAGTAG 57.149 33.333 15.76 0.00 44.22 2.57
335 336 7.404139 TTCTTTCTGTTACTTCGAAAGTAGC 57.596 36.000 15.76 6.94 44.22 3.58
336 337 6.746120 TCTTTCTGTTACTTCGAAAGTAGCT 58.254 36.000 16.33 0.00 44.22 3.32
337 338 6.641314 TCTTTCTGTTACTTCGAAAGTAGCTG 59.359 38.462 16.33 15.71 44.22 4.24
338 339 5.449107 TCTGTTACTTCGAAAGTAGCTGT 57.551 39.130 16.33 6.30 44.22 4.40
339 340 5.839621 TCTGTTACTTCGAAAGTAGCTGTT 58.160 37.500 16.33 0.00 44.22 3.16
340 341 6.278363 TCTGTTACTTCGAAAGTAGCTGTTT 58.722 36.000 16.33 0.00 44.22 2.83
341 342 6.420008 TCTGTTACTTCGAAAGTAGCTGTTTC 59.580 38.462 16.33 11.55 44.22 2.78
342 343 6.044046 TGTTACTTCGAAAGTAGCTGTTTCA 58.956 36.000 18.35 7.41 44.22 2.69
343 344 6.200286 TGTTACTTCGAAAGTAGCTGTTTCAG 59.800 38.462 18.35 13.09 44.22 3.02
344 345 3.495001 ACTTCGAAAGTAGCTGTTTCAGC 59.505 43.478 18.35 13.00 45.08 4.26
354 355 0.236711 CTGTTTCAGCTTCAGCCACG 59.763 55.000 0.00 0.00 43.38 4.94
355 356 1.081840 GTTTCAGCTTCAGCCACGC 60.082 57.895 0.00 0.00 43.38 5.34
356 357 2.606961 TTTCAGCTTCAGCCACGCG 61.607 57.895 3.53 3.53 43.38 6.01
357 358 2.987282 TTTCAGCTTCAGCCACGCGA 62.987 55.000 15.93 0.00 43.38 5.87
358 359 2.987282 TTCAGCTTCAGCCACGCGAA 62.987 55.000 15.93 0.00 43.38 4.70
359 360 2.046892 AGCTTCAGCCACGCGAAT 60.047 55.556 15.93 0.00 43.38 3.34
360 361 1.672356 AGCTTCAGCCACGCGAATT 60.672 52.632 15.93 0.00 43.38 2.17
361 362 1.226128 GCTTCAGCCACGCGAATTC 60.226 57.895 15.93 0.00 34.31 2.17
362 363 1.639298 GCTTCAGCCACGCGAATTCT 61.639 55.000 15.93 0.46 34.31 2.40
363 364 0.371645 CTTCAGCCACGCGAATTCTC 59.628 55.000 15.93 0.00 0.00 2.87
395 396 9.624697 TCCTTTTTATTTCTCATCAAACGAATG 57.375 29.630 0.00 0.00 0.00 2.67
396 397 8.863049 CCTTTTTATTTCTCATCAAACGAATGG 58.137 33.333 0.00 0.00 0.00 3.16
397 398 7.810766 TTTTATTTCTCATCAAACGAATGGC 57.189 32.000 0.00 0.00 0.00 4.40
398 399 6.507958 TTATTTCTCATCAAACGAATGGCA 57.492 33.333 0.00 0.00 0.00 4.92
399 400 5.587388 ATTTCTCATCAAACGAATGGCAT 57.413 34.783 0.00 0.00 0.00 4.40
400 401 6.698008 ATTTCTCATCAAACGAATGGCATA 57.302 33.333 0.00 0.00 0.00 3.14
575 576 2.091278 CAGGACCTCCCCTACAGTATCA 60.091 54.545 0.00 0.00 34.07 2.15
758 760 1.146774 TCTGCCCTCCCTCTCTATCTG 59.853 57.143 0.00 0.00 0.00 2.90
781 783 1.836166 CAAGAGATGGAAGGGCAGAGA 59.164 52.381 0.00 0.00 0.00 3.10
999 1008 4.227134 CTGTCGCTCCATCCCCGG 62.227 72.222 0.00 0.00 0.00 5.73
1491 1501 0.952280 ACTTTCGTCTCTGCTCGACA 59.048 50.000 0.00 0.00 35.82 4.35
1554 1564 2.819595 CCAATGTCCGTCTGGCCG 60.820 66.667 0.00 0.00 34.14 6.13
1555 1565 2.047274 CAATGTCCGTCTGGCCGT 60.047 61.111 0.00 0.00 34.14 5.68
1556 1566 2.047274 AATGTCCGTCTGGCCGTG 60.047 61.111 0.00 0.00 34.14 4.94
1557 1567 4.760047 ATGTCCGTCTGGCCGTGC 62.760 66.667 0.00 0.00 34.14 5.34
1689 1700 5.441500 CTCTTCCAGAGTGGTATCTCACTA 58.558 45.833 0.00 0.00 46.76 2.74
1699 1711 2.610727 GGTATCTCACTAATGGCTCGGC 60.611 54.545 0.00 0.00 0.00 5.54
1909 1922 2.125391 GGGTCGGAACTTACCCGC 60.125 66.667 0.00 0.00 45.73 6.13
2119 2133 2.034999 CTGCGGCCCCCTTTTGTA 59.965 61.111 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.702478 CCATCTCATAGCTCTCAACCCA 59.298 50.000 0.00 0.00 0.00 4.51
1 2 2.549778 GCCATCTCATAGCTCTCAACCC 60.550 54.545 0.00 0.00 0.00 4.11
2 3 2.765122 GCCATCTCATAGCTCTCAACC 58.235 52.381 0.00 0.00 0.00 3.77
3 4 2.035193 TCGCCATCTCATAGCTCTCAAC 59.965 50.000 0.00 0.00 0.00 3.18
4 5 2.310538 TCGCCATCTCATAGCTCTCAA 58.689 47.619 0.00 0.00 0.00 3.02
5 6 1.986882 TCGCCATCTCATAGCTCTCA 58.013 50.000 0.00 0.00 0.00 3.27
6 7 2.417107 CCATCGCCATCTCATAGCTCTC 60.417 54.545 0.00 0.00 0.00 3.20
7 8 1.549620 CCATCGCCATCTCATAGCTCT 59.450 52.381 0.00 0.00 0.00 4.09
8 9 1.547820 TCCATCGCCATCTCATAGCTC 59.452 52.381 0.00 0.00 0.00 4.09
9 10 1.637338 TCCATCGCCATCTCATAGCT 58.363 50.000 0.00 0.00 0.00 3.32
10 11 2.462456 TTCCATCGCCATCTCATAGC 57.538 50.000 0.00 0.00 0.00 2.97
11 12 3.126514 GCATTTCCATCGCCATCTCATAG 59.873 47.826 0.00 0.00 0.00 2.23
12 13 3.076621 GCATTTCCATCGCCATCTCATA 58.923 45.455 0.00 0.00 0.00 2.15
13 14 1.884579 GCATTTCCATCGCCATCTCAT 59.115 47.619 0.00 0.00 0.00 2.90
14 15 1.134007 AGCATTTCCATCGCCATCTCA 60.134 47.619 0.00 0.00 0.00 3.27
15 16 1.266175 CAGCATTTCCATCGCCATCTC 59.734 52.381 0.00 0.00 0.00 2.75
16 17 1.315690 CAGCATTTCCATCGCCATCT 58.684 50.000 0.00 0.00 0.00 2.90
17 18 0.313043 CCAGCATTTCCATCGCCATC 59.687 55.000 0.00 0.00 0.00 3.51
18 19 0.106569 TCCAGCATTTCCATCGCCAT 60.107 50.000 0.00 0.00 0.00 4.40
19 20 0.106569 ATCCAGCATTTCCATCGCCA 60.107 50.000 0.00 0.00 0.00 5.69
20 21 0.313043 CATCCAGCATTTCCATCGCC 59.687 55.000 0.00 0.00 0.00 5.54
21 22 1.027357 ACATCCAGCATTTCCATCGC 58.973 50.000 0.00 0.00 0.00 4.58
22 23 1.335810 CCACATCCAGCATTTCCATCG 59.664 52.381 0.00 0.00 0.00 3.84
23 24 2.360165 GTCCACATCCAGCATTTCCATC 59.640 50.000 0.00 0.00 0.00 3.51
24 25 2.381911 GTCCACATCCAGCATTTCCAT 58.618 47.619 0.00 0.00 0.00 3.41
25 26 1.838112 GTCCACATCCAGCATTTCCA 58.162 50.000 0.00 0.00 0.00 3.53
26 27 0.734889 CGTCCACATCCAGCATTTCC 59.265 55.000 0.00 0.00 0.00 3.13
27 28 1.667724 CTCGTCCACATCCAGCATTTC 59.332 52.381 0.00 0.00 0.00 2.17
28 29 1.679944 CCTCGTCCACATCCAGCATTT 60.680 52.381 0.00 0.00 0.00 2.32
29 30 0.107508 CCTCGTCCACATCCAGCATT 60.108 55.000 0.00 0.00 0.00 3.56
30 31 1.524002 CCTCGTCCACATCCAGCAT 59.476 57.895 0.00 0.00 0.00 3.79
31 32 2.981302 CCTCGTCCACATCCAGCA 59.019 61.111 0.00 0.00 0.00 4.41
32 33 2.512515 GCCTCGTCCACATCCAGC 60.513 66.667 0.00 0.00 0.00 4.85
33 34 2.202797 CGCCTCGTCCACATCCAG 60.203 66.667 0.00 0.00 0.00 3.86
34 35 3.770040 CCGCCTCGTCCACATCCA 61.770 66.667 0.00 0.00 0.00 3.41
36 37 3.740128 ATGCCGCCTCGTCCACATC 62.740 63.158 0.00 0.00 0.00 3.06
37 38 3.785859 ATGCCGCCTCGTCCACAT 61.786 61.111 0.00 0.00 0.00 3.21
38 39 4.758251 CATGCCGCCTCGTCCACA 62.758 66.667 0.00 0.00 0.00 4.17
39 40 4.760047 ACATGCCGCCTCGTCCAC 62.760 66.667 0.00 0.00 0.00 4.02
40 41 4.758251 CACATGCCGCCTCGTCCA 62.758 66.667 0.00 0.00 0.00 4.02
42 43 3.716539 TAGCACATGCCGCCTCGTC 62.717 63.158 0.00 0.00 43.38 4.20
43 44 2.796483 TTTAGCACATGCCGCCTCGT 62.796 55.000 0.00 0.00 43.38 4.18
44 45 1.439353 ATTTAGCACATGCCGCCTCG 61.439 55.000 0.00 0.00 43.38 4.63
45 46 1.264288 GTATTTAGCACATGCCGCCTC 59.736 52.381 0.00 0.00 43.38 4.70
46 47 1.134098 AGTATTTAGCACATGCCGCCT 60.134 47.619 0.00 0.00 43.38 5.52
47 48 1.308998 AGTATTTAGCACATGCCGCC 58.691 50.000 0.00 0.00 43.38 6.13
48 49 2.354510 TGAAGTATTTAGCACATGCCGC 59.645 45.455 0.00 0.00 43.38 6.53
49 50 3.242739 GGTGAAGTATTTAGCACATGCCG 60.243 47.826 0.00 0.00 43.38 5.69
50 51 3.694072 TGGTGAAGTATTTAGCACATGCC 59.306 43.478 0.00 0.00 37.16 4.40
51 52 4.963276 TGGTGAAGTATTTAGCACATGC 57.037 40.909 0.00 0.00 37.16 4.06
52 53 6.682423 TCATGGTGAAGTATTTAGCACATG 57.318 37.500 0.00 0.00 44.81 3.21
53 54 6.830324 ACATCATGGTGAAGTATTTAGCACAT 59.170 34.615 14.29 0.00 44.81 3.21
54 55 6.179756 ACATCATGGTGAAGTATTTAGCACA 58.820 36.000 14.29 0.00 44.81 4.57
55 56 6.683974 ACATCATGGTGAAGTATTTAGCAC 57.316 37.500 14.29 0.00 44.81 4.40
56 57 6.095300 CCAACATCATGGTGAAGTATTTAGCA 59.905 38.462 14.29 0.00 46.04 3.49
57 58 6.318648 TCCAACATCATGGTGAAGTATTTAGC 59.681 38.462 14.29 0.00 37.20 3.09
58 59 7.864108 TCCAACATCATGGTGAAGTATTTAG 57.136 36.000 14.29 0.00 37.20 1.85
59 60 7.339212 CCTTCCAACATCATGGTGAAGTATTTA 59.661 37.037 14.29 0.00 37.20 1.40
60 61 6.153340 CCTTCCAACATCATGGTGAAGTATTT 59.847 38.462 14.29 0.00 37.20 1.40
61 62 5.653769 CCTTCCAACATCATGGTGAAGTATT 59.346 40.000 14.29 0.00 37.20 1.89
62 63 5.044919 TCCTTCCAACATCATGGTGAAGTAT 60.045 40.000 14.29 0.00 37.20 2.12
63 64 4.288366 TCCTTCCAACATCATGGTGAAGTA 59.712 41.667 14.29 0.00 37.20 2.24
64 65 3.074390 TCCTTCCAACATCATGGTGAAGT 59.926 43.478 14.29 0.00 37.20 3.01
65 66 3.689347 TCCTTCCAACATCATGGTGAAG 58.311 45.455 14.29 5.56 37.20 3.02
66 67 3.805066 TCCTTCCAACATCATGGTGAA 57.195 42.857 14.29 0.00 37.20 3.18
67 68 3.181435 TGTTCCTTCCAACATCATGGTGA 60.181 43.478 14.29 0.00 37.20 4.02
68 69 3.156293 TGTTCCTTCCAACATCATGGTG 58.844 45.455 3.86 3.86 41.46 4.17
69 70 3.424703 CTGTTCCTTCCAACATCATGGT 58.575 45.455 0.00 0.00 41.46 3.55
70 71 2.165030 GCTGTTCCTTCCAACATCATGG 59.835 50.000 0.00 0.00 42.12 3.66
71 72 3.087031 AGCTGTTCCTTCCAACATCATG 58.913 45.455 0.00 0.00 35.70 3.07
72 73 3.350833 GAGCTGTTCCTTCCAACATCAT 58.649 45.455 0.00 0.00 35.70 2.45
73 74 2.783135 GAGCTGTTCCTTCCAACATCA 58.217 47.619 0.00 0.00 35.70 3.07
74 75 1.734465 CGAGCTGTTCCTTCCAACATC 59.266 52.381 0.00 0.00 35.70 3.06
75 76 1.072331 ACGAGCTGTTCCTTCCAACAT 59.928 47.619 0.00 0.00 35.70 2.71
76 77 0.468226 ACGAGCTGTTCCTTCCAACA 59.532 50.000 0.00 0.00 34.99 3.33
77 78 2.067013 GTACGAGCTGTTCCTTCCAAC 58.933 52.381 0.00 0.00 0.00 3.77
78 79 1.968493 AGTACGAGCTGTTCCTTCCAA 59.032 47.619 0.00 0.00 0.00 3.53
79 80 1.629043 AGTACGAGCTGTTCCTTCCA 58.371 50.000 0.00 0.00 0.00 3.53
80 81 2.338500 CAAGTACGAGCTGTTCCTTCC 58.662 52.381 0.00 0.00 0.00 3.46
81 82 2.338500 CCAAGTACGAGCTGTTCCTTC 58.662 52.381 0.00 0.00 0.00 3.46
82 83 1.608283 GCCAAGTACGAGCTGTTCCTT 60.608 52.381 0.00 0.00 0.00 3.36
83 84 0.037232 GCCAAGTACGAGCTGTTCCT 60.037 55.000 0.00 0.00 0.00 3.36
84 85 0.037232 AGCCAAGTACGAGCTGTTCC 60.037 55.000 0.00 0.00 34.99 3.62
85 86 3.516578 AGCCAAGTACGAGCTGTTC 57.483 52.632 0.00 0.00 34.99 3.18
89 90 2.224305 ACTTTTCAGCCAAGTACGAGCT 60.224 45.455 0.00 0.00 37.32 4.09
90 91 2.143925 ACTTTTCAGCCAAGTACGAGC 58.856 47.619 0.00 0.00 32.48 5.03
91 92 4.527564 CAAACTTTTCAGCCAAGTACGAG 58.472 43.478 0.00 0.00 33.12 4.18
92 93 3.242936 GCAAACTTTTCAGCCAAGTACGA 60.243 43.478 0.00 0.00 33.12 3.43
93 94 3.042887 GCAAACTTTTCAGCCAAGTACG 58.957 45.455 0.00 0.00 33.12 3.67
94 95 3.381045 GGCAAACTTTTCAGCCAAGTAC 58.619 45.455 0.00 0.00 46.26 2.73
95 96 3.726291 GGCAAACTTTTCAGCCAAGTA 57.274 42.857 0.00 0.00 46.26 2.24
96 97 2.602257 GGCAAACTTTTCAGCCAAGT 57.398 45.000 0.00 0.00 46.26 3.16
100 101 2.904664 GCTGGCAAACTTTTCAGCC 58.095 52.632 12.40 0.00 44.70 4.85
102 103 4.540824 GAGTTAGCTGGCAAACTTTTCAG 58.459 43.478 4.67 0.00 36.10 3.02
103 104 3.317993 GGAGTTAGCTGGCAAACTTTTCA 59.682 43.478 4.67 0.00 36.10 2.69
104 105 3.317993 TGGAGTTAGCTGGCAAACTTTTC 59.682 43.478 4.67 0.38 36.10 2.29
105 106 3.295973 TGGAGTTAGCTGGCAAACTTTT 58.704 40.909 4.67 0.00 36.10 2.27
106 107 2.944129 TGGAGTTAGCTGGCAAACTTT 58.056 42.857 4.67 0.00 36.10 2.66
107 108 2.656947 TGGAGTTAGCTGGCAAACTT 57.343 45.000 4.67 0.00 36.10 2.66
108 109 2.821969 CAATGGAGTTAGCTGGCAAACT 59.178 45.455 2.81 2.81 38.62 2.66
109 110 2.094545 CCAATGGAGTTAGCTGGCAAAC 60.095 50.000 0.00 0.00 0.00 2.93
110 111 2.170166 CCAATGGAGTTAGCTGGCAAA 58.830 47.619 0.00 0.00 0.00 3.68
111 112 1.354031 TCCAATGGAGTTAGCTGGCAA 59.646 47.619 0.00 0.00 0.00 4.52
112 113 0.991146 TCCAATGGAGTTAGCTGGCA 59.009 50.000 0.00 0.00 0.00 4.92
113 114 2.225467 GATCCAATGGAGTTAGCTGGC 58.775 52.381 8.40 0.00 34.05 4.85
114 115 3.565764 TGATCCAATGGAGTTAGCTGG 57.434 47.619 8.40 0.00 34.05 4.85
124 125 0.892358 CTCGGCCCATGATCCAATGG 60.892 60.000 0.00 5.28 45.82 3.16
125 126 0.179009 ACTCGGCCCATGATCCAATG 60.179 55.000 0.00 0.00 0.00 2.82
126 127 0.552848 AACTCGGCCCATGATCCAAT 59.447 50.000 0.00 0.00 0.00 3.16
127 128 1.208706 TAACTCGGCCCATGATCCAA 58.791 50.000 0.00 0.00 0.00 3.53
128 129 1.208706 TTAACTCGGCCCATGATCCA 58.791 50.000 0.00 0.00 0.00 3.41
129 130 2.222027 CTTTAACTCGGCCCATGATCC 58.778 52.381 0.00 0.00 0.00 3.36
130 131 2.222027 CCTTTAACTCGGCCCATGATC 58.778 52.381 0.00 0.00 0.00 2.92
131 132 1.750682 GCCTTTAACTCGGCCCATGAT 60.751 52.381 0.00 0.00 40.43 2.45
132 133 0.393808 GCCTTTAACTCGGCCCATGA 60.394 55.000 0.00 0.00 40.43 3.07
133 134 2.106844 GCCTTTAACTCGGCCCATG 58.893 57.895 0.00 0.00 40.43 3.66
134 135 4.657952 GCCTTTAACTCGGCCCAT 57.342 55.556 0.00 0.00 40.43 4.00
138 139 2.822701 CCGGGCCTTTAACTCGGC 60.823 66.667 0.84 0.00 45.55 5.54
139 140 0.607217 AAACCGGGCCTTTAACTCGG 60.607 55.000 6.32 12.14 45.42 4.63
140 141 0.519961 CAAACCGGGCCTTTAACTCG 59.480 55.000 6.32 0.00 0.00 4.18
141 142 1.538512 GACAAACCGGGCCTTTAACTC 59.461 52.381 6.32 0.00 0.00 3.01
142 143 1.612676 GACAAACCGGGCCTTTAACT 58.387 50.000 6.32 0.00 0.00 2.24
143 144 0.599558 GGACAAACCGGGCCTTTAAC 59.400 55.000 6.32 0.00 0.00 2.01
144 145 0.185416 TGGACAAACCGGGCCTTTAA 59.815 50.000 6.32 0.00 42.61 1.52
145 146 0.250989 CTGGACAAACCGGGCCTTTA 60.251 55.000 6.32 0.00 41.14 1.85
146 147 1.530655 CTGGACAAACCGGGCCTTT 60.531 57.895 6.32 0.00 41.14 3.11
147 148 2.002018 TTCTGGACAAACCGGGCCTT 62.002 55.000 6.32 0.00 44.73 4.35
148 149 1.789576 ATTCTGGACAAACCGGGCCT 61.790 55.000 6.32 0.00 44.73 5.19
149 150 0.898326 AATTCTGGACAAACCGGGCC 60.898 55.000 6.32 0.00 44.73 5.80
150 151 0.966179 AAATTCTGGACAAACCGGGC 59.034 50.000 6.32 0.00 44.73 6.13
151 152 2.235016 TCAAATTCTGGACAAACCGGG 58.765 47.619 6.32 0.00 44.73 5.73
152 153 3.305335 CCTTCAAATTCTGGACAAACCGG 60.305 47.826 0.00 0.00 45.93 5.28
153 154 3.568007 TCCTTCAAATTCTGGACAAACCG 59.432 43.478 0.00 0.00 42.61 4.44
154 155 4.871513 GTCCTTCAAATTCTGGACAAACC 58.128 43.478 6.18 0.00 45.87 3.27
159 160 3.058914 CACGTGTCCTTCAAATTCTGGAC 60.059 47.826 7.58 0.00 46.53 4.02
160 161 3.138304 CACGTGTCCTTCAAATTCTGGA 58.862 45.455 7.58 0.00 0.00 3.86
161 162 2.350772 GCACGTGTCCTTCAAATTCTGG 60.351 50.000 18.38 0.00 0.00 3.86
162 163 2.290367 TGCACGTGTCCTTCAAATTCTG 59.710 45.455 18.38 0.00 0.00 3.02
163 164 2.571212 TGCACGTGTCCTTCAAATTCT 58.429 42.857 18.38 0.00 0.00 2.40
164 165 3.300009 CTTGCACGTGTCCTTCAAATTC 58.700 45.455 18.38 0.00 0.00 2.17
165 166 2.543653 GCTTGCACGTGTCCTTCAAATT 60.544 45.455 18.38 0.00 0.00 1.82
166 167 1.001378 GCTTGCACGTGTCCTTCAAAT 60.001 47.619 18.38 0.00 0.00 2.32
167 168 0.380378 GCTTGCACGTGTCCTTCAAA 59.620 50.000 18.38 0.38 0.00 2.69
168 169 0.746204 TGCTTGCACGTGTCCTTCAA 60.746 50.000 18.38 11.07 0.00 2.69
169 170 1.153269 TGCTTGCACGTGTCCTTCA 60.153 52.632 18.38 2.76 0.00 3.02
170 171 1.571460 CTGCTTGCACGTGTCCTTC 59.429 57.895 18.38 0.00 0.00 3.46
171 172 2.546494 GCTGCTTGCACGTGTCCTT 61.546 57.895 18.38 0.00 42.31 3.36
172 173 2.974698 GCTGCTTGCACGTGTCCT 60.975 61.111 18.38 0.00 42.31 3.85
173 174 4.030452 GGCTGCTTGCACGTGTCC 62.030 66.667 18.38 1.32 45.15 4.02
174 175 4.030452 GGGCTGCTTGCACGTGTC 62.030 66.667 18.38 10.14 45.15 3.67
180 181 0.901114 ATTGACATGGGCTGCTTGCA 60.901 50.000 0.00 0.00 45.15 4.08
181 182 0.248289 AATTGACATGGGCTGCTTGC 59.752 50.000 0.00 0.00 41.94 4.01
182 183 1.274167 ACAATTGACATGGGCTGCTTG 59.726 47.619 13.59 0.00 0.00 4.01
183 184 1.274167 CACAATTGACATGGGCTGCTT 59.726 47.619 13.59 0.00 0.00 3.91
184 185 0.892755 CACAATTGACATGGGCTGCT 59.107 50.000 13.59 0.00 0.00 4.24
185 186 0.108520 CCACAATTGACATGGGCTGC 60.109 55.000 13.59 0.00 0.00 5.25
186 187 1.203052 GTCCACAATTGACATGGGCTG 59.797 52.381 13.59 0.00 35.13 4.85
187 188 1.549203 GTCCACAATTGACATGGGCT 58.451 50.000 13.59 0.00 35.13 5.19
188 189 0.532115 GGTCCACAATTGACATGGGC 59.468 55.000 13.59 11.01 37.39 5.36
189 190 2.220653 AGGTCCACAATTGACATGGG 57.779 50.000 13.59 5.58 34.36 4.00
190 191 3.696051 CCTAAGGTCCACAATTGACATGG 59.304 47.826 13.59 9.86 34.36 3.66
191 192 4.588899 TCCTAAGGTCCACAATTGACATG 58.411 43.478 13.59 0.00 34.36 3.21
192 193 4.848357 CTCCTAAGGTCCACAATTGACAT 58.152 43.478 13.59 0.00 34.36 3.06
193 194 3.559171 GCTCCTAAGGTCCACAATTGACA 60.559 47.826 13.59 0.00 34.36 3.58
194 195 3.010420 GCTCCTAAGGTCCACAATTGAC 58.990 50.000 13.59 0.00 0.00 3.18
195 196 2.026262 GGCTCCTAAGGTCCACAATTGA 60.026 50.000 13.59 0.00 0.00 2.57
196 197 2.369394 GGCTCCTAAGGTCCACAATTG 58.631 52.381 3.24 3.24 0.00 2.32
197 198 1.285078 GGGCTCCTAAGGTCCACAATT 59.715 52.381 0.00 0.00 0.00 2.32
198 199 0.919710 GGGCTCCTAAGGTCCACAAT 59.080 55.000 0.00 0.00 0.00 2.71
199 200 0.178873 AGGGCTCCTAAGGTCCACAA 60.179 55.000 0.00 0.00 28.47 3.33
200 201 0.909610 CAGGGCTCCTAAGGTCCACA 60.910 60.000 0.00 0.00 29.64 4.17
201 202 1.908483 CAGGGCTCCTAAGGTCCAC 59.092 63.158 0.00 0.00 29.64 4.02
202 203 1.995626 GCAGGGCTCCTAAGGTCCA 60.996 63.158 0.00 0.00 29.64 4.02
203 204 2.911928 GCAGGGCTCCTAAGGTCC 59.088 66.667 0.00 0.00 29.64 4.46
204 205 2.022240 CTCGCAGGGCTCCTAAGGTC 62.022 65.000 0.00 0.00 29.64 3.85
205 206 2.038975 TCGCAGGGCTCCTAAGGT 59.961 61.111 0.00 0.00 29.64 3.50
206 207 1.118356 ATCTCGCAGGGCTCCTAAGG 61.118 60.000 0.00 0.00 29.64 2.69
207 208 0.033228 CATCTCGCAGGGCTCCTAAG 59.967 60.000 0.00 0.00 29.64 2.18
208 209 0.397114 TCATCTCGCAGGGCTCCTAA 60.397 55.000 0.00 0.00 29.64 2.69
209 210 0.397114 TTCATCTCGCAGGGCTCCTA 60.397 55.000 0.00 0.00 29.64 2.94
210 211 1.267574 TTTCATCTCGCAGGGCTCCT 61.268 55.000 0.00 0.00 0.00 3.69
211 212 0.813210 CTTTCATCTCGCAGGGCTCC 60.813 60.000 0.00 0.00 0.00 4.70
212 213 0.107945 ACTTTCATCTCGCAGGGCTC 60.108 55.000 0.00 0.00 0.00 4.70
213 214 0.107945 GACTTTCATCTCGCAGGGCT 60.108 55.000 0.00 0.00 0.00 5.19
214 215 0.107945 AGACTTTCATCTCGCAGGGC 60.108 55.000 0.00 0.00 0.00 5.19
215 216 1.205655 TGAGACTTTCATCTCGCAGGG 59.794 52.381 0.00 0.00 46.98 4.45
216 217 2.662006 TGAGACTTTCATCTCGCAGG 57.338 50.000 0.00 0.00 46.98 4.85
217 218 2.284684 GCATGAGACTTTCATCTCGCAG 59.715 50.000 0.00 0.00 46.98 5.18
218 219 2.274437 GCATGAGACTTTCATCTCGCA 58.726 47.619 0.00 0.00 46.98 5.10
219 220 2.030213 GTGCATGAGACTTTCATCTCGC 59.970 50.000 0.00 0.00 46.98 5.03
220 221 2.280971 CGTGCATGAGACTTTCATCTCG 59.719 50.000 0.00 0.00 46.98 4.04
221 222 2.606725 CCGTGCATGAGACTTTCATCTC 59.393 50.000 7.72 0.00 44.76 2.75
222 223 2.027745 ACCGTGCATGAGACTTTCATCT 60.028 45.455 7.72 0.00 44.76 2.90
223 224 2.350522 ACCGTGCATGAGACTTTCATC 58.649 47.619 7.72 0.00 44.76 2.92
225 226 2.254546 AACCGTGCATGAGACTTTCA 57.745 45.000 7.72 0.00 40.85 2.69
226 227 3.300009 CAAAACCGTGCATGAGACTTTC 58.700 45.455 7.72 0.00 0.00 2.62
227 228 2.543653 GCAAAACCGTGCATGAGACTTT 60.544 45.455 7.72 0.00 44.29 2.66
228 229 1.001378 GCAAAACCGTGCATGAGACTT 60.001 47.619 7.72 0.00 44.29 3.01
229 230 0.593128 GCAAAACCGTGCATGAGACT 59.407 50.000 7.72 0.00 44.29 3.24
230 231 3.092081 GCAAAACCGTGCATGAGAC 57.908 52.632 7.72 0.00 44.29 3.36
237 238 0.874390 TCTCTCATGCAAAACCGTGC 59.126 50.000 0.00 0.00 45.15 5.34
238 239 3.250762 TCTTTCTCTCATGCAAAACCGTG 59.749 43.478 0.00 0.00 0.00 4.94
239 240 3.476552 TCTTTCTCTCATGCAAAACCGT 58.523 40.909 0.00 0.00 0.00 4.83
240 241 4.470462 CTTCTTTCTCTCATGCAAAACCG 58.530 43.478 0.00 0.00 0.00 4.44
241 242 4.233005 GCTTCTTTCTCTCATGCAAAACC 58.767 43.478 0.00 0.00 0.00 3.27
242 243 3.910767 CGCTTCTTTCTCTCATGCAAAAC 59.089 43.478 0.00 0.00 0.00 2.43
243 244 3.814842 TCGCTTCTTTCTCTCATGCAAAA 59.185 39.130 0.00 0.00 0.00 2.44
244 245 3.402110 TCGCTTCTTTCTCTCATGCAAA 58.598 40.909 0.00 0.00 0.00 3.68
245 246 2.998670 CTCGCTTCTTTCTCTCATGCAA 59.001 45.455 0.00 0.00 0.00 4.08
246 247 2.614779 CTCGCTTCTTTCTCTCATGCA 58.385 47.619 0.00 0.00 0.00 3.96
247 248 1.932511 CCTCGCTTCTTTCTCTCATGC 59.067 52.381 0.00 0.00 0.00 4.06
248 249 3.516981 TCCTCGCTTCTTTCTCTCATG 57.483 47.619 0.00 0.00 0.00 3.07
249 250 4.442753 GGATTCCTCGCTTCTTTCTCTCAT 60.443 45.833 0.00 0.00 0.00 2.90
250 251 3.118956 GGATTCCTCGCTTCTTTCTCTCA 60.119 47.826 0.00 0.00 0.00 3.27
251 252 3.132111 AGGATTCCTCGCTTCTTTCTCTC 59.868 47.826 0.00 0.00 0.00 3.20
252 253 3.103742 AGGATTCCTCGCTTCTTTCTCT 58.896 45.455 0.00 0.00 0.00 3.10
253 254 3.453424 GAGGATTCCTCGCTTCTTTCTC 58.547 50.000 16.79 0.00 41.08 2.87
254 255 3.535280 GAGGATTCCTCGCTTCTTTCT 57.465 47.619 16.79 0.00 41.08 2.52
265 266 4.081917 GTCAGAGTCGAAAAGAGGATTCCT 60.082 45.833 4.44 4.44 36.03 3.36
266 267 4.081917 AGTCAGAGTCGAAAAGAGGATTCC 60.082 45.833 0.00 0.00 0.00 3.01
267 268 5.066968 AGTCAGAGTCGAAAAGAGGATTC 57.933 43.478 0.00 0.00 0.00 2.52
268 269 4.081917 GGAGTCAGAGTCGAAAAGAGGATT 60.082 45.833 0.00 0.00 0.00 3.01
269 270 3.445805 GGAGTCAGAGTCGAAAAGAGGAT 59.554 47.826 0.00 0.00 0.00 3.24
270 271 2.820787 GGAGTCAGAGTCGAAAAGAGGA 59.179 50.000 0.00 0.00 0.00 3.71
271 272 2.094442 GGGAGTCAGAGTCGAAAAGAGG 60.094 54.545 0.00 0.00 0.00 3.69
272 273 2.094442 GGGGAGTCAGAGTCGAAAAGAG 60.094 54.545 0.00 0.00 0.00 2.85
273 274 1.893801 GGGGAGTCAGAGTCGAAAAGA 59.106 52.381 0.00 0.00 0.00 2.52
274 275 1.066787 GGGGGAGTCAGAGTCGAAAAG 60.067 57.143 0.00 0.00 0.00 2.27
275 276 0.974383 GGGGGAGTCAGAGTCGAAAA 59.026 55.000 0.00 0.00 0.00 2.29
276 277 0.178944 TGGGGGAGTCAGAGTCGAAA 60.179 55.000 0.00 0.00 0.00 3.46
277 278 0.898789 GTGGGGGAGTCAGAGTCGAA 60.899 60.000 0.00 0.00 0.00 3.71
278 279 1.304217 GTGGGGGAGTCAGAGTCGA 60.304 63.158 0.00 0.00 0.00 4.20
279 280 1.304547 AGTGGGGGAGTCAGAGTCG 60.305 63.158 0.00 0.00 0.00 4.18
280 281 0.973496 GGAGTGGGGGAGTCAGAGTC 60.973 65.000 0.00 0.00 0.00 3.36
281 282 1.079438 GGAGTGGGGGAGTCAGAGT 59.921 63.158 0.00 0.00 0.00 3.24
282 283 0.975040 CTGGAGTGGGGGAGTCAGAG 60.975 65.000 0.00 0.00 0.00 3.35
283 284 1.079256 CTGGAGTGGGGGAGTCAGA 59.921 63.158 0.00 0.00 0.00 3.27
284 285 1.229336 ACTGGAGTGGGGGAGTCAG 60.229 63.158 0.00 0.00 0.00 3.51
285 286 1.229209 GACTGGAGTGGGGGAGTCA 60.229 63.158 0.00 0.00 35.82 3.41
286 287 2.352032 CGACTGGAGTGGGGGAGTC 61.352 68.421 0.00 0.00 32.99 3.36
287 288 2.283966 CGACTGGAGTGGGGGAGT 60.284 66.667 0.00 0.00 0.00 3.85
288 289 1.913762 AACGACTGGAGTGGGGGAG 60.914 63.158 0.00 0.00 0.00 4.30
289 290 2.203182 AACGACTGGAGTGGGGGA 59.797 61.111 0.00 0.00 0.00 4.81
290 291 2.347490 CAACGACTGGAGTGGGGG 59.653 66.667 0.00 0.00 0.00 5.40
291 292 2.358737 GCAACGACTGGAGTGGGG 60.359 66.667 0.00 0.00 0.00 4.96
292 293 0.535102 AAAGCAACGACTGGAGTGGG 60.535 55.000 0.00 0.00 0.00 4.61
293 294 1.264288 GAAAAGCAACGACTGGAGTGG 59.736 52.381 0.00 0.00 0.00 4.00
294 295 2.213499 AGAAAAGCAACGACTGGAGTG 58.787 47.619 0.00 0.00 0.00 3.51
295 296 2.622064 AGAAAAGCAACGACTGGAGT 57.378 45.000 0.00 0.00 0.00 3.85
296 297 3.561725 AGAAAGAAAAGCAACGACTGGAG 59.438 43.478 0.00 0.00 0.00 3.86
297 298 3.312421 CAGAAAGAAAAGCAACGACTGGA 59.688 43.478 0.00 0.00 0.00 3.86
298 299 3.065371 ACAGAAAGAAAAGCAACGACTGG 59.935 43.478 0.00 0.00 0.00 4.00
299 300 4.278678 ACAGAAAGAAAAGCAACGACTG 57.721 40.909 0.00 0.00 0.00 3.51
300 301 4.965119 AACAGAAAGAAAAGCAACGACT 57.035 36.364 0.00 0.00 0.00 4.18
301 302 5.807344 AGTAACAGAAAGAAAAGCAACGAC 58.193 37.500 0.00 0.00 0.00 4.34
302 303 6.431198 AAGTAACAGAAAGAAAAGCAACGA 57.569 33.333 0.00 0.00 0.00 3.85
303 304 5.392585 CGAAGTAACAGAAAGAAAAGCAACG 59.607 40.000 0.00 0.00 0.00 4.10
304 305 6.483687 TCGAAGTAACAGAAAGAAAAGCAAC 58.516 36.000 0.00 0.00 0.00 4.17
305 306 6.671614 TCGAAGTAACAGAAAGAAAAGCAA 57.328 33.333 0.00 0.00 0.00 3.91
306 307 6.671614 TTCGAAGTAACAGAAAGAAAAGCA 57.328 33.333 0.00 0.00 0.00 3.91
314 315 6.278363 ACAGCTACTTTCGAAGTAACAGAAA 58.722 36.000 0.00 0.00 42.99 2.52
315 316 5.839621 ACAGCTACTTTCGAAGTAACAGAA 58.160 37.500 0.00 0.00 42.99 3.02
316 317 5.449107 ACAGCTACTTTCGAAGTAACAGA 57.551 39.130 0.00 0.00 42.99 3.41
317 318 6.200286 TGAAACAGCTACTTTCGAAGTAACAG 59.800 38.462 0.00 0.00 42.99 3.16
318 319 6.044046 TGAAACAGCTACTTTCGAAGTAACA 58.956 36.000 0.00 0.00 42.99 2.41
319 320 6.520792 TGAAACAGCTACTTTCGAAGTAAC 57.479 37.500 0.00 0.00 42.99 2.50
320 321 6.764877 CTGAAACAGCTACTTTCGAAGTAA 57.235 37.500 0.00 0.00 42.99 2.24
335 336 0.236711 CGTGGCTGAAGCTGAAACAG 59.763 55.000 1.74 0.00 41.70 3.16
336 337 1.785041 GCGTGGCTGAAGCTGAAACA 61.785 55.000 1.74 0.00 41.70 2.83
337 338 1.081840 GCGTGGCTGAAGCTGAAAC 60.082 57.895 1.74 0.00 41.70 2.78
338 339 2.606961 CGCGTGGCTGAAGCTGAAA 61.607 57.895 0.00 0.00 41.70 2.69
339 340 2.987282 TTCGCGTGGCTGAAGCTGAA 62.987 55.000 5.77 0.00 41.70 3.02
340 341 2.786539 ATTCGCGTGGCTGAAGCTGA 62.787 55.000 5.77 0.00 41.70 4.26
341 342 1.915614 AATTCGCGTGGCTGAAGCTG 61.916 55.000 5.77 0.00 41.70 4.24
342 343 1.639298 GAATTCGCGTGGCTGAAGCT 61.639 55.000 5.77 0.00 41.70 3.74
343 344 1.226128 GAATTCGCGTGGCTGAAGC 60.226 57.895 5.77 0.00 41.14 3.86
344 345 0.371645 GAGAATTCGCGTGGCTGAAG 59.628 55.000 5.77 0.00 0.00 3.02
345 346 1.351430 CGAGAATTCGCGTGGCTGAA 61.351 55.000 21.53 0.00 40.36 3.02
346 347 1.805539 CGAGAATTCGCGTGGCTGA 60.806 57.895 21.53 0.00 40.36 4.26
347 348 1.148157 ATCGAGAATTCGCGTGGCTG 61.148 55.000 27.00 2.70 46.28 4.85
348 349 0.384309 TATCGAGAATTCGCGTGGCT 59.616 50.000 27.00 14.78 46.28 4.75
349 350 1.419374 ATATCGAGAATTCGCGTGGC 58.581 50.000 27.00 2.25 46.28 5.01
350 351 2.408704 GGAATATCGAGAATTCGCGTGG 59.591 50.000 27.00 4.09 46.28 4.94
351 352 3.309388 AGGAATATCGAGAATTCGCGTG 58.691 45.455 27.00 4.78 46.28 5.34
352 353 3.644884 AGGAATATCGAGAATTCGCGT 57.355 42.857 27.00 17.99 46.28 6.01
353 354 4.974103 AAAGGAATATCGAGAATTCGCG 57.026 40.909 23.43 23.43 46.28 5.87
354 355 9.665264 AAATAAAAAGGAATATCGAGAATTCGC 57.335 29.630 13.96 0.00 46.28 4.70
369 370 9.624697 CATTCGTTTGATGAGAAATAAAAAGGA 57.375 29.630 0.00 0.00 0.00 3.36
370 371 8.863049 CCATTCGTTTGATGAGAAATAAAAAGG 58.137 33.333 0.00 0.00 0.00 3.11
371 372 8.375465 GCCATTCGTTTGATGAGAAATAAAAAG 58.625 33.333 0.00 0.00 0.00 2.27
372 373 7.869937 TGCCATTCGTTTGATGAGAAATAAAAA 59.130 29.630 0.00 0.00 0.00 1.94
373 374 7.374272 TGCCATTCGTTTGATGAGAAATAAAA 58.626 30.769 0.00 0.00 0.00 1.52
374 375 6.918626 TGCCATTCGTTTGATGAGAAATAAA 58.081 32.000 0.00 0.00 0.00 1.40
375 376 6.507958 TGCCATTCGTTTGATGAGAAATAA 57.492 33.333 0.00 0.00 0.00 1.40
376 377 6.698008 ATGCCATTCGTTTGATGAGAAATA 57.302 33.333 0.00 0.00 0.00 1.40
377 378 5.587388 ATGCCATTCGTTTGATGAGAAAT 57.413 34.783 0.00 0.00 0.00 2.17
378 379 5.647658 ACTATGCCATTCGTTTGATGAGAAA 59.352 36.000 0.00 0.00 0.00 2.52
379 380 5.065090 CACTATGCCATTCGTTTGATGAGAA 59.935 40.000 0.00 0.00 0.00 2.87
380 381 4.571984 CACTATGCCATTCGTTTGATGAGA 59.428 41.667 0.00 0.00 0.00 3.27
381 382 4.571984 TCACTATGCCATTCGTTTGATGAG 59.428 41.667 0.00 0.00 0.00 2.90
382 383 4.512484 TCACTATGCCATTCGTTTGATGA 58.488 39.130 0.00 0.00 0.00 2.92
383 384 4.880886 TCACTATGCCATTCGTTTGATG 57.119 40.909 0.00 0.00 0.00 3.07
384 385 4.943705 ACTTCACTATGCCATTCGTTTGAT 59.056 37.500 0.00 0.00 0.00 2.57
385 386 4.154015 CACTTCACTATGCCATTCGTTTGA 59.846 41.667 0.00 0.00 0.00 2.69
386 387 4.406069 CACTTCACTATGCCATTCGTTTG 58.594 43.478 0.00 0.00 0.00 2.93
387 388 3.440173 CCACTTCACTATGCCATTCGTTT 59.560 43.478 0.00 0.00 0.00 3.60
388 389 3.009723 CCACTTCACTATGCCATTCGTT 58.990 45.455 0.00 0.00 0.00 3.85
389 390 2.632377 CCACTTCACTATGCCATTCGT 58.368 47.619 0.00 0.00 0.00 3.85
390 391 1.942657 CCCACTTCACTATGCCATTCG 59.057 52.381 0.00 0.00 0.00 3.34
391 392 3.118261 TCTCCCACTTCACTATGCCATTC 60.118 47.826 0.00 0.00 0.00 2.67
392 393 2.846206 TCTCCCACTTCACTATGCCATT 59.154 45.455 0.00 0.00 0.00 3.16
393 394 2.437281 CTCTCCCACTTCACTATGCCAT 59.563 50.000 0.00 0.00 0.00 4.40
394 395 1.833630 CTCTCCCACTTCACTATGCCA 59.166 52.381 0.00 0.00 0.00 4.92
395 396 2.102252 CTCTCTCCCACTTCACTATGCC 59.898 54.545 0.00 0.00 0.00 4.40
396 397 2.102252 CCTCTCTCCCACTTCACTATGC 59.898 54.545 0.00 0.00 0.00 3.14
397 398 2.697751 CCCTCTCTCCCACTTCACTATG 59.302 54.545 0.00 0.00 0.00 2.23
398 399 2.359781 CCCCTCTCTCCCACTTCACTAT 60.360 54.545 0.00 0.00 0.00 2.12
399 400 1.007238 CCCCTCTCTCCCACTTCACTA 59.993 57.143 0.00 0.00 0.00 2.74
400 401 0.252467 CCCCTCTCTCCCACTTCACT 60.252 60.000 0.00 0.00 0.00 3.41
575 576 3.259876 TGGTTAAACTCTACTGCGGTGAT 59.740 43.478 8.92 0.00 0.00 3.06
847 850 0.681887 TTCCTACACGGCCTGATCGA 60.682 55.000 0.00 0.00 0.00 3.59
848 851 0.527817 GTTCCTACACGGCCTGATCG 60.528 60.000 0.00 0.00 0.00 3.69
1028 1037 2.307768 CTAGAGCCTCCGGTATCACAA 58.692 52.381 0.00 0.00 0.00 3.33
1319 1328 2.351244 CGCCACCTGGAGCTGTAGA 61.351 63.158 0.00 0.00 37.39 2.59
1557 1567 1.007387 GGAGGCGTGCAAAGGTTTG 60.007 57.895 0.00 0.00 41.03 2.93
1726 1739 1.296715 CGCAGCTTAGGTGGAAGGT 59.703 57.895 13.50 0.00 37.65 3.50
1909 1922 3.877508 CCTAAGGTAGCGAAATTCCTTGG 59.122 47.826 4.53 1.96 40.05 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.