Multiple sequence alignment - TraesCS3D01G483400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G483400 chr3D 100.000 4544 0 0 1 4544 580724706 580720163 0.000000e+00 8392
1 TraesCS3D01G483400 chr3B 88.597 4297 286 69 9 4243 777988882 777993036 0.000000e+00 5033
2 TraesCS3D01G483400 chr3B 94.118 272 15 1 4266 4537 777993546 777993816 3.270000e-111 412
3 TraesCS3D01G483400 chr7D 86.449 797 66 20 951 1735 104002731 104003497 0.000000e+00 835
4 TraesCS3D01G483400 chr2B 85.912 795 67 22 954 1735 733268019 733267257 0.000000e+00 806
5 TraesCS3D01G483400 chr7A 85.448 804 74 23 954 1745 87206897 87206125 0.000000e+00 797
6 TraesCS3D01G483400 chr7A 84.289 802 78 23 951 1739 204586407 204587173 0.000000e+00 739
7 TraesCS3D01G483400 chr5B 85.305 803 72 25 951 1739 633447041 633447811 0.000000e+00 787
8 TraesCS3D01G483400 chr2A 83.623 806 84 21 954 1745 92873173 92872402 0.000000e+00 713
9 TraesCS3D01G483400 chr2A 85.775 703 60 24 1056 1745 759629323 759628648 0.000000e+00 708
10 TraesCS3D01G483400 chr4A 79.823 679 81 29 1076 1744 612970835 612971467 1.160000e-120 444
11 TraesCS3D01G483400 chr4A 79.529 679 82 30 1076 1744 612992597 612993228 9.030000e-117 431


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G483400 chr3D 580720163 580724706 4543 True 8392.0 8392 100.0000 1 4544 1 chr3D.!!$R1 4543
1 TraesCS3D01G483400 chr3B 777988882 777993816 4934 False 2722.5 5033 91.3575 9 4537 2 chr3B.!!$F1 4528
2 TraesCS3D01G483400 chr7D 104002731 104003497 766 False 835.0 835 86.4490 951 1735 1 chr7D.!!$F1 784
3 TraesCS3D01G483400 chr2B 733267257 733268019 762 True 806.0 806 85.9120 954 1735 1 chr2B.!!$R1 781
4 TraesCS3D01G483400 chr7A 87206125 87206897 772 True 797.0 797 85.4480 954 1745 1 chr7A.!!$R1 791
5 TraesCS3D01G483400 chr7A 204586407 204587173 766 False 739.0 739 84.2890 951 1739 1 chr7A.!!$F1 788
6 TraesCS3D01G483400 chr5B 633447041 633447811 770 False 787.0 787 85.3050 951 1739 1 chr5B.!!$F1 788
7 TraesCS3D01G483400 chr2A 92872402 92873173 771 True 713.0 713 83.6230 954 1745 1 chr2A.!!$R1 791
8 TraesCS3D01G483400 chr2A 759628648 759629323 675 True 708.0 708 85.7750 1056 1745 1 chr2A.!!$R2 689
9 TraesCS3D01G483400 chr4A 612970835 612971467 632 False 444.0 444 79.8230 1076 1744 1 chr4A.!!$F1 668
10 TraesCS3D01G483400 chr4A 612992597 612993228 631 False 431.0 431 79.5290 1076 1744 1 chr4A.!!$F2 668

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
107 108 0.106569 TGATGCAGGTAGGGCCATTG 60.107 55.0 6.18 0.0 40.61 2.82 F
502 505 0.110486 GTTGTGTGACCCCTCCATGT 59.890 55.0 0.00 0.0 0.00 3.21 F
1452 1475 0.034089 AGCCCCAGATTGGTAAGTGC 60.034 55.0 0.00 0.0 35.17 4.40 F
1967 2019 0.032540 CCTTTGCTGAACCTGGCAAC 59.967 55.0 0.00 0.0 46.14 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1332 1349 0.176910 TGTCAGGCTTGAACACGTGA 59.823 50.000 25.01 0.0 34.49 4.35 R
1493 1528 0.660488 TGAGCACAAACGTTTGCGAT 59.340 45.000 34.70 27.2 43.87 4.58 R
3399 3467 1.523258 CTGATCCTTCAGCTGCCCG 60.523 63.158 9.47 0.0 42.79 6.13 R
3924 4001 0.031178 GTGGTGCTGTTGAAGGCTTG 59.969 55.000 3.46 0.0 0.00 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.130857 TGTCAAACTCTTATTTGGTCGCA 58.869 39.130 0.00 0.00 39.57 5.10
28 29 6.428465 TGTCAAACTCTTATTTGGTCGCAATA 59.572 34.615 0.00 0.00 39.57 1.90
44 45 3.806521 CGCAATATAGTCAGCTCAGCTTT 59.193 43.478 0.00 0.00 36.40 3.51
45 46 4.318618 CGCAATATAGTCAGCTCAGCTTTG 60.319 45.833 0.00 0.00 36.40 2.77
59 60 1.224592 CTTTGGCTAGCCCCGTCAT 59.775 57.895 30.81 0.00 34.56 3.06
60 61 0.394352 CTTTGGCTAGCCCCGTCATT 60.394 55.000 30.81 0.00 34.56 2.57
61 62 0.679640 TTTGGCTAGCCCCGTCATTG 60.680 55.000 30.81 0.00 34.56 2.82
62 63 2.203209 GGCTAGCCCCGTCATTGG 60.203 66.667 24.19 0.00 0.00 3.16
69 70 2.484062 CCCCGTCATTGGAGCATGC 61.484 63.158 10.51 10.51 0.00 4.06
70 71 1.750018 CCCGTCATTGGAGCATGCA 60.750 57.895 21.98 0.00 30.91 3.96
76 77 2.684374 GTCATTGGAGCATGCATGTGTA 59.316 45.455 26.79 9.41 35.22 2.90
93 94 7.095102 TGCATGTGTACATATGAATAGTGATGC 60.095 37.037 30.14 15.99 34.26 3.91
99 100 8.306761 TGTACATATGAATAGTGATGCAGGTAG 58.693 37.037 10.38 0.00 0.00 3.18
100 101 6.705302 ACATATGAATAGTGATGCAGGTAGG 58.295 40.000 10.38 0.00 0.00 3.18
104 105 0.326143 TAGTGATGCAGGTAGGGCCA 60.326 55.000 6.18 0.00 40.61 5.36
105 106 0.990282 AGTGATGCAGGTAGGGCCAT 60.990 55.000 6.18 0.00 40.61 4.40
107 108 0.106569 TGATGCAGGTAGGGCCATTG 60.107 55.000 6.18 0.00 40.61 2.82
131 133 4.575236 GGGGGATTAAGAAACATTCGAGAC 59.425 45.833 0.00 0.00 34.02 3.36
132 134 4.575236 GGGGATTAAGAAACATTCGAGACC 59.425 45.833 0.00 0.00 34.02 3.85
134 136 5.429130 GGATTAAGAAACATTCGAGACCCT 58.571 41.667 0.00 0.00 34.02 4.34
135 137 5.524281 GGATTAAGAAACATTCGAGACCCTC 59.476 44.000 0.00 0.00 34.02 4.30
173 175 4.141846 TGTGAGAGCATCCAACCTTAGATC 60.142 45.833 0.00 0.00 33.66 2.75
174 176 3.389329 TGAGAGCATCCAACCTTAGATCC 59.611 47.826 0.00 0.00 33.66 3.36
197 199 5.949354 CCCTAAGTTGTATTTCCACCATCAA 59.051 40.000 0.00 0.00 0.00 2.57
202 204 5.774690 AGTTGTATTTCCACCATCAACACAT 59.225 36.000 0.00 0.00 37.97 3.21
206 208 6.717084 TGTATTTCCACCATCAACACATACAA 59.283 34.615 0.00 0.00 0.00 2.41
207 209 6.855763 ATTTCCACCATCAACACATACAAT 57.144 33.333 0.00 0.00 0.00 2.71
212 214 6.493115 TCCACCATCAACACATACAATTTTCT 59.507 34.615 0.00 0.00 0.00 2.52
214 216 8.303156 CCACCATCAACACATACAATTTTCTTA 58.697 33.333 0.00 0.00 0.00 2.10
233 235 9.856162 TTTTCTTACTTTTACATAGTGGACCTT 57.144 29.630 0.00 0.00 0.00 3.50
234 236 9.856162 TTTCTTACTTTTACATAGTGGACCTTT 57.144 29.630 0.00 0.00 0.00 3.11
250 252 4.398358 GGACCTTTATGAACTAAACCAGGC 59.602 45.833 0.00 0.00 0.00 4.85
260 262 2.562738 ACTAAACCAGGCCAAAGATTGC 59.437 45.455 5.01 0.00 0.00 3.56
280 282 1.026718 CGTGGAGATTGGCAAGACCC 61.027 60.000 5.96 6.83 37.83 4.46
283 285 1.026718 GGAGATTGGCAAGACCCGTG 61.027 60.000 5.96 0.00 37.83 4.94
285 287 1.675641 GATTGGCAAGACCCGTGCT 60.676 57.895 5.96 0.00 41.88 4.40
316 318 3.062639 CGACGAAATGGTTGAGATCCTTG 59.937 47.826 0.00 0.00 0.00 3.61
317 319 4.253685 GACGAAATGGTTGAGATCCTTGA 58.746 43.478 0.00 0.00 0.00 3.02
322 324 6.514870 CGAAATGGTTGAGATCCTTGAAACAA 60.515 38.462 0.00 0.00 0.00 2.83
325 327 5.139727 TGGTTGAGATCCTTGAAACAACAT 58.860 37.500 0.00 0.00 39.15 2.71
329 331 6.317789 TGAGATCCTTGAAACAACATTCAC 57.682 37.500 0.00 0.00 38.95 3.18
340 342 8.620116 TGAAACAACATTCACTTATGATCAGA 57.380 30.769 0.09 0.00 34.50 3.27
352 354 6.017275 CACTTATGATCAGATTGGAGAAAGGC 60.017 42.308 0.09 0.00 0.00 4.35
357 359 0.393537 AGATTGGAGAAAGGCAGGCG 60.394 55.000 0.00 0.00 0.00 5.52
358 360 0.392998 GATTGGAGAAAGGCAGGCGA 60.393 55.000 0.00 0.00 0.00 5.54
362 364 1.293498 GAGAAAGGCAGGCGAGACA 59.707 57.895 0.00 0.00 0.00 3.41
364 366 0.321122 AGAAAGGCAGGCGAGACAAG 60.321 55.000 0.00 0.00 0.00 3.16
386 388 8.302438 ACAAGCCAAGATAAATCAAGAAGAAAG 58.698 33.333 0.00 0.00 0.00 2.62
409 411 0.249398 GGGGCGTAAGAGAAGCTCAA 59.751 55.000 0.00 0.00 34.13 3.02
439 441 7.382759 GTGAGATTCTAGACGGTTAATGGAATC 59.617 40.741 14.49 14.49 38.33 2.52
440 442 7.287927 TGAGATTCTAGACGGTTAATGGAATCT 59.712 37.037 20.16 20.16 45.57 2.40
443 445 5.128205 TCTAGACGGTTAATGGAATCTCGA 58.872 41.667 0.00 0.00 0.00 4.04
448 450 5.934921 ACGGTTAATGGAATCTCGAAAAAC 58.065 37.500 0.00 0.00 0.00 2.43
462 465 7.852971 TCTCGAAAAACGGTAATAATGGAAT 57.147 32.000 0.00 0.00 42.82 3.01
487 490 0.465460 TGCCAGCCGAAAAGAGTTGT 60.465 50.000 0.00 0.00 0.00 3.32
490 493 1.002468 CCAGCCGAAAAGAGTTGTGTG 60.002 52.381 0.00 0.00 0.00 3.82
492 495 1.940613 AGCCGAAAAGAGTTGTGTGAC 59.059 47.619 0.00 0.00 0.00 3.67
493 496 1.002792 GCCGAAAAGAGTTGTGTGACC 60.003 52.381 0.00 0.00 0.00 4.02
494 497 1.602377 CCGAAAAGAGTTGTGTGACCC 59.398 52.381 0.00 0.00 0.00 4.46
495 498 1.602377 CGAAAAGAGTTGTGTGACCCC 59.398 52.381 0.00 0.00 0.00 4.95
496 499 2.745152 CGAAAAGAGTTGTGTGACCCCT 60.745 50.000 0.00 0.00 0.00 4.79
497 500 2.640316 AAAGAGTTGTGTGACCCCTC 57.360 50.000 0.00 0.00 0.00 4.30
498 501 0.765510 AAGAGTTGTGTGACCCCTCC 59.234 55.000 0.00 0.00 0.00 4.30
499 502 0.399949 AGAGTTGTGTGACCCCTCCA 60.400 55.000 0.00 0.00 0.00 3.86
500 503 0.693049 GAGTTGTGTGACCCCTCCAT 59.307 55.000 0.00 0.00 0.00 3.41
501 504 0.401738 AGTTGTGTGACCCCTCCATG 59.598 55.000 0.00 0.00 0.00 3.66
502 505 0.110486 GTTGTGTGACCCCTCCATGT 59.890 55.000 0.00 0.00 0.00 3.21
503 506 0.400213 TTGTGTGACCCCTCCATGTC 59.600 55.000 0.00 0.00 0.00 3.06
558 561 7.152645 TGAGAGAGGTAGTACAAAACAATGTC 58.847 38.462 2.06 0.00 34.75 3.06
560 563 7.155328 AGAGAGGTAGTACAAAACAATGTCTG 58.845 38.462 2.06 0.00 34.75 3.51
572 575 3.848301 ATGTCTGCGGGTGCTTGCA 62.848 57.895 0.00 0.00 43.34 4.08
597 600 4.259213 CGTTGGATCGTGTTTGTTTGTTTG 60.259 41.667 0.00 0.00 0.00 2.93
598 601 4.442375 TGGATCGTGTTTGTTTGTTTGT 57.558 36.364 0.00 0.00 0.00 2.83
599 602 4.810790 TGGATCGTGTTTGTTTGTTTGTT 58.189 34.783 0.00 0.00 0.00 2.83
600 603 5.230942 TGGATCGTGTTTGTTTGTTTGTTT 58.769 33.333 0.00 0.00 0.00 2.83
604 607 6.010294 TCGTGTTTGTTTGTTTGTTTAGGA 57.990 33.333 0.00 0.00 0.00 2.94
662 669 2.131294 GAGCCGTCGAGCGTATCCAT 62.131 60.000 0.00 0.00 39.32 3.41
690 697 6.818142 AGTCCAATCCAAACAAACAAAAGAAG 59.182 34.615 0.00 0.00 0.00 2.85
695 702 6.698359 TCCAAACAAACAAAAGAAGAAACG 57.302 33.333 0.00 0.00 0.00 3.60
731 738 1.268184 CGGTCGCAAACATGATGATGG 60.268 52.381 0.00 0.00 33.39 3.51
741 748 4.051661 ACATGATGATGGAGGTGGTTTT 57.948 40.909 0.00 0.00 33.39 2.43
877 884 1.019673 CCACAGATCCATTCCAAGCG 58.980 55.000 0.00 0.00 0.00 4.68
878 885 1.679944 CCACAGATCCATTCCAAGCGT 60.680 52.381 0.00 0.00 0.00 5.07
879 886 1.667724 CACAGATCCATTCCAAGCGTC 59.332 52.381 0.00 0.00 0.00 5.19
880 887 1.303309 CAGATCCATTCCAAGCGTCC 58.697 55.000 0.00 0.00 0.00 4.79
881 888 0.911769 AGATCCATTCCAAGCGTCCA 59.088 50.000 0.00 0.00 0.00 4.02
882 889 1.017387 GATCCATTCCAAGCGTCCAC 58.983 55.000 0.00 0.00 0.00 4.02
883 890 0.394352 ATCCATTCCAAGCGTCCACC 60.394 55.000 0.00 0.00 0.00 4.61
884 891 1.002134 CCATTCCAAGCGTCCACCT 60.002 57.895 0.00 0.00 0.00 4.00
885 892 1.026718 CCATTCCAAGCGTCCACCTC 61.027 60.000 0.00 0.00 0.00 3.85
886 893 1.026718 CATTCCAAGCGTCCACCTCC 61.027 60.000 0.00 0.00 0.00 4.30
887 894 2.198304 ATTCCAAGCGTCCACCTCCC 62.198 60.000 0.00 0.00 0.00 4.30
888 895 4.410400 CCAAGCGTCCACCTCCCC 62.410 72.222 0.00 0.00 0.00 4.81
889 896 4.760047 CAAGCGTCCACCTCCCCG 62.760 72.222 0.00 0.00 0.00 5.73
942 949 1.296715 CAACAACTCCCTCCCCGAG 59.703 63.158 0.00 0.00 0.00 4.63
952 959 1.481056 CCTCCCCGAGTCCAAACAGT 61.481 60.000 0.00 0.00 0.00 3.55
1245 1253 3.692406 AACGCCCAGGTCCGTCTC 61.692 66.667 3.14 0.00 36.56 3.36
1252 1269 2.363147 AGGTCCGTCTCCTGCTCC 60.363 66.667 0.00 0.00 33.62 4.70
1264 1281 1.153005 CTGCTCCTCCCCAATCTGC 60.153 63.158 0.00 0.00 0.00 4.26
1273 1290 0.394899 CCCCAATCTGCTTGACCTCC 60.395 60.000 0.00 0.00 36.97 4.30
1281 1298 2.692741 CTTGACCTCCCCCTCCCC 60.693 72.222 0.00 0.00 0.00 4.81
1284 1301 4.500826 GACCTCCCCCTCCCCCTC 62.501 77.778 0.00 0.00 0.00 4.30
1326 1343 2.806434 AGCATCTCTGTCTGTCTGTCT 58.194 47.619 0.00 0.00 0.00 3.41
1327 1344 2.492881 AGCATCTCTGTCTGTCTGTCTG 59.507 50.000 0.00 0.00 0.00 3.51
1328 1345 2.230992 GCATCTCTGTCTGTCTGTCTGT 59.769 50.000 0.00 0.00 0.00 3.41
1329 1346 3.673052 GCATCTCTGTCTGTCTGTCTGTC 60.673 52.174 0.00 0.00 0.00 3.51
1330 1347 3.500448 TCTCTGTCTGTCTGTCTGTCT 57.500 47.619 0.00 0.00 0.00 3.41
1331 1348 4.625607 TCTCTGTCTGTCTGTCTGTCTA 57.374 45.455 0.00 0.00 0.00 2.59
1332 1349 5.172687 TCTCTGTCTGTCTGTCTGTCTAT 57.827 43.478 0.00 0.00 0.00 1.98
1333 1350 5.182487 TCTCTGTCTGTCTGTCTGTCTATC 58.818 45.833 0.00 0.00 0.00 2.08
1346 1363 2.668457 CTGTCTATCACGTGTTCAAGCC 59.332 50.000 16.51 0.00 0.00 4.35
1352 1369 1.202639 TCACGTGTTCAAGCCTGACAT 60.203 47.619 16.51 0.00 0.00 3.06
1353 1370 2.036604 TCACGTGTTCAAGCCTGACATA 59.963 45.455 16.51 0.00 0.00 2.29
1452 1475 0.034089 AGCCCCAGATTGGTAAGTGC 60.034 55.000 0.00 0.00 35.17 4.40
1458 1481 3.055094 CCCAGATTGGTAAGTGCACTAGT 60.055 47.826 22.01 8.20 35.17 2.57
1473 1497 8.480133 AGTGCACTAGTTAGTATTATTAGCCT 57.520 34.615 20.16 0.00 34.13 4.58
1476 1507 8.577296 TGCACTAGTTAGTATTATTAGCCTCAG 58.423 37.037 0.00 0.00 34.13 3.35
1483 1514 9.130312 GTTAGTATTATTAGCCTCAGTCAATCG 57.870 37.037 0.00 0.00 0.00 3.34
1487 1522 0.461548 TAGCCTCAGTCAATCGCTGG 59.538 55.000 0.00 0.00 34.89 4.85
1512 1547 0.660488 ATCGCAAACGTTTGTGCTCA 59.340 45.000 37.40 26.22 45.60 4.26
1520 1555 3.878086 ACGTTTGTGCTCAACATAGTG 57.122 42.857 0.00 0.00 38.99 2.74
1586 1623 2.100605 TTTGGGCTTTTGTTTTGCGT 57.899 40.000 0.00 0.00 0.00 5.24
1592 1629 2.605366 GGCTTTTGTTTTGCGTGCTTAA 59.395 40.909 0.00 0.00 0.00 1.85
1601 1638 7.603963 TGTTTTGCGTGCTTAAGAGATTATA 57.396 32.000 6.67 0.00 0.00 0.98
1602 1639 8.035165 TGTTTTGCGTGCTTAAGAGATTATAA 57.965 30.769 6.67 0.00 0.00 0.98
1603 1640 8.673711 TGTTTTGCGTGCTTAAGAGATTATAAT 58.326 29.630 6.67 0.00 0.00 1.28
1604 1641 8.947940 GTTTTGCGTGCTTAAGAGATTATAATG 58.052 33.333 6.67 0.00 0.00 1.90
1605 1642 6.228273 TGCGTGCTTAAGAGATTATAATGC 57.772 37.500 6.67 0.00 0.00 3.56
1606 1643 5.757808 TGCGTGCTTAAGAGATTATAATGCA 59.242 36.000 6.67 1.58 0.00 3.96
1607 1644 6.074005 GCGTGCTTAAGAGATTATAATGCAC 58.926 40.000 18.09 18.09 43.00 4.57
1608 1645 6.292865 GCGTGCTTAAGAGATTATAATGCACA 60.293 38.462 23.48 4.17 45.58 4.57
1609 1646 7.571983 GCGTGCTTAAGAGATTATAATGCACAT 60.572 37.037 23.48 6.11 45.58 3.21
1727 1775 2.079925 GATTTGCAGGTCAGTCAGTCC 58.920 52.381 0.00 0.00 0.00 3.85
1745 1793 1.626321 TCCGCATTCAGGGTTTACTCA 59.374 47.619 0.00 0.00 0.00 3.41
1750 1798 3.507622 GCATTCAGGGTTTACTCAGCTTT 59.492 43.478 0.00 0.00 0.00 3.51
1752 1800 3.418684 TCAGGGTTTACTCAGCTTTCC 57.581 47.619 0.00 0.00 0.00 3.13
1753 1801 2.076863 CAGGGTTTACTCAGCTTTCCG 58.923 52.381 0.00 0.00 0.00 4.30
1754 1802 1.697982 AGGGTTTACTCAGCTTTCCGT 59.302 47.619 0.00 0.00 0.00 4.69
1755 1803 2.105993 AGGGTTTACTCAGCTTTCCGTT 59.894 45.455 0.00 0.00 0.00 4.44
1756 1804 2.225727 GGGTTTACTCAGCTTTCCGTTG 59.774 50.000 0.00 0.00 0.00 4.10
1762 1810 3.805207 ACTCAGCTTTCCGTTGTTAACT 58.195 40.909 7.22 0.00 0.00 2.24
1784 1832 2.945668 GGTGATTCAGGGTATTCACTGC 59.054 50.000 0.00 0.00 44.11 4.40
1795 1843 8.385491 TCAGGGTATTCACTGCATGATATAATT 58.615 33.333 0.00 0.00 44.11 1.40
1802 1850 9.736414 ATTCACTGCATGATATAATTTCTAGCT 57.264 29.630 0.00 0.00 37.11 3.32
1825 1873 3.634397 ATTCCAATCGAGAAGAAGCCA 57.366 42.857 0.00 0.00 0.00 4.75
1843 1891 2.673043 GCCAACTGATGCCATGTTTCTG 60.673 50.000 0.00 0.00 0.00 3.02
1845 1893 3.758023 CCAACTGATGCCATGTTTCTGTA 59.242 43.478 0.00 0.00 0.00 2.74
1881 1930 3.181516 GGACATGAAACATCTCGCTTCAC 60.182 47.826 0.00 0.00 32.67 3.18
1894 1946 1.569479 GCTTCACGCGAGCTCCTTTT 61.569 55.000 15.93 0.00 37.18 2.27
1967 2019 0.032540 CCTTTGCTGAACCTGGCAAC 59.967 55.000 0.00 0.00 46.14 4.17
1968 2020 0.032540 CTTTGCTGAACCTGGCAACC 59.967 55.000 0.00 0.00 46.14 3.77
1969 2021 0.685785 TTTGCTGAACCTGGCAACCA 60.686 50.000 0.00 0.00 46.14 3.67
1970 2022 0.685785 TTGCTGAACCTGGCAACCAA 60.686 50.000 0.00 0.00 42.45 3.67
1971 2023 0.469705 TGCTGAACCTGGCAACCAAT 60.470 50.000 0.00 0.00 35.40 3.16
1974 2026 2.497273 GCTGAACCTGGCAACCAATATT 59.503 45.455 0.00 0.00 30.80 1.28
1975 2027 3.676873 GCTGAACCTGGCAACCAATATTG 60.677 47.826 8.58 8.58 30.80 1.90
2005 2060 5.761165 TTTGAAGTACAACTTACCAAGCC 57.239 39.130 0.00 0.00 38.80 4.35
2009 2064 5.047164 TGAAGTACAACTTACCAAGCCGATA 60.047 40.000 0.00 0.00 38.80 2.92
2023 2078 7.913789 ACCAAGCCGATACTCCATTTATATAA 58.086 34.615 0.00 0.00 0.00 0.98
2078 2133 4.096382 CACCTTACCATGTACTCCATTTGC 59.904 45.833 0.00 0.00 0.00 3.68
2130 2185 7.335171 AGACGTTTGTAAAATTACCCTCCATAC 59.665 37.037 0.00 0.00 32.72 2.39
2156 2211 1.342174 CCAAAGTTGAGCCATGCACTT 59.658 47.619 0.00 0.00 0.00 3.16
2211 2266 9.295214 CTTGAGTTACTCAACATAGTATGACTG 57.705 37.037 22.16 12.58 44.27 3.51
2219 2274 8.774586 ACTCAACATAGTATGACTGTTTTTGTC 58.225 33.333 17.13 0.00 30.99 3.18
2345 2402 6.423302 CAGGTAAACATATGCAGATCTGTCTC 59.577 42.308 23.38 8.14 30.42 3.36
2360 2417 7.757624 CAGATCTGTCTCCTGTAAACTTACTTC 59.242 40.741 14.95 0.00 31.65 3.01
2368 2425 8.483758 TCTCCTGTAAACTTACTTCTTGTCTTT 58.516 33.333 1.58 0.00 34.77 2.52
2388 2445 9.990360 TGTCTTTTAATCTATCAACTACACACA 57.010 29.630 0.00 0.00 0.00 3.72
2396 2453 8.599055 ATCTATCAACTACACACATAATGCTG 57.401 34.615 0.00 0.00 0.00 4.41
2407 2472 7.700505 ACACACATAATGCTGATATTGTGAAG 58.299 34.615 7.76 3.11 34.47 3.02
2455 2521 6.284459 GTGATCTCCCTTTAGTGATACCTTG 58.716 44.000 0.00 0.00 0.00 3.61
2542 2608 7.088589 ACCTAATTGAAATGTCAAGGATTCG 57.911 36.000 8.82 0.00 46.75 3.34
2544 2610 7.148239 ACCTAATTGAAATGTCAAGGATTCGAC 60.148 37.037 8.82 0.00 46.75 4.20
2590 2656 9.599322 CGGTCTGCTTTATTGATTCATTATTAC 57.401 33.333 0.00 0.00 0.00 1.89
2639 2705 5.927030 ACGTGCAACACATTATCTACTTTG 58.073 37.500 0.00 0.00 35.74 2.77
2645 2712 8.200792 TGCAACACATTATCTACTTTGGTTTTT 58.799 29.630 0.00 0.00 0.00 1.94
2727 2795 5.184864 TGTTGCTGGTGGAATTACTAAATGG 59.815 40.000 0.00 0.00 0.00 3.16
2731 2799 5.755849 CTGGTGGAATTACTAAATGGAGGT 58.244 41.667 0.00 0.00 0.00 3.85
2732 2800 6.147437 TGGTGGAATTACTAAATGGAGGTT 57.853 37.500 0.00 0.00 0.00 3.50
2746 2814 9.838339 CTAAATGGAGGTTGTATCACTAGAAAT 57.162 33.333 0.00 0.00 0.00 2.17
2792 2860 4.862350 TCTTGCTGATGTTGTTTCATGTG 58.138 39.130 0.00 0.00 0.00 3.21
2823 2891 1.076923 TCTGGGAGAGACGGCTACC 60.077 63.158 0.00 0.00 39.51 3.18
2925 2993 3.532542 GGTTACTGGCTTGAGGTATGTC 58.467 50.000 0.00 0.00 0.00 3.06
3169 3237 7.613585 TCTGTTATTTTACATAGTCCGTTGGA 58.386 34.615 0.00 0.00 0.00 3.53
3197 3265 8.621532 TTATCTTGCATAGTTATTAAGCTGGG 57.378 34.615 0.00 0.00 0.00 4.45
3203 3271 5.335191 GCATAGTTATTAAGCTGGGATGTGC 60.335 44.000 0.00 0.00 0.00 4.57
3217 3285 2.754552 GGATGTGCATAGTTCCTTTGCA 59.245 45.455 5.44 5.44 43.71 4.08
3258 3326 9.571816 TGCATTCTACCATATCAACAATTATGA 57.428 29.630 0.00 0.00 0.00 2.15
3291 3359 5.827797 TCTCAAGTTTGCAGTATCCTGTTTT 59.172 36.000 0.00 0.00 41.02 2.43
3292 3360 6.321181 TCTCAAGTTTGCAGTATCCTGTTTTT 59.679 34.615 0.00 0.00 41.02 1.94
3305 3373 8.641541 AGTATCCTGTTTTTGTCATTTGTTGAT 58.358 29.630 0.00 0.00 36.54 2.57
3315 3383 9.681692 TTTTGTCATTTGTTGATCTTCTACATG 57.318 29.630 0.00 0.00 36.54 3.21
3349 3417 7.568349 ACCTCTTTTTGTCATATGATCTGCTA 58.432 34.615 9.02 0.00 0.00 3.49
3399 3467 0.808847 GCGAGACGGGTAAACATCCC 60.809 60.000 0.00 0.00 41.41 3.85
3501 3569 2.458592 GCACACTGATAAATGCCGTC 57.541 50.000 0.00 0.00 31.71 4.79
3567 3635 6.789959 AGTCTTCTTATAATCCTGGTAGCCAT 59.210 38.462 0.00 0.00 30.82 4.40
3569 3637 7.389053 GTCTTCTTATAATCCTGGTAGCCATTG 59.611 40.741 0.00 0.00 30.82 2.82
3574 3642 4.862641 AATCCTGGTAGCCATTGTTAGT 57.137 40.909 0.00 0.00 30.82 2.24
3588 3656 6.090763 GCCATTGTTAGTTTTGCTACAATTCC 59.909 38.462 0.00 0.00 33.41 3.01
3643 3713 7.555087 AGATCTTAATCTCAGACTCCAAACAG 58.445 38.462 0.00 0.00 37.75 3.16
3650 3720 2.035961 TCAGACTCCAAACAGGTTCTCG 59.964 50.000 0.00 0.00 39.02 4.04
3660 3730 6.148811 TCCAAACAGGTTCTCGACATATTTTC 59.851 38.462 0.00 0.00 39.02 2.29
3669 3739 6.392625 TCTCGACATATTTTCCTGGTCTAG 57.607 41.667 0.00 0.00 0.00 2.43
3720 3796 4.414852 CATTAACCTGTGCTTGCATACAC 58.585 43.478 11.61 11.61 37.31 2.90
3721 3797 1.979855 AACCTGTGCTTGCATACACA 58.020 45.000 18.16 18.16 44.19 3.72
3727 3803 2.293122 TGTGCTTGCATACACAGAAACC 59.707 45.455 16.01 0.00 41.67 3.27
3729 3805 2.954989 TGCTTGCATACACAGAAACCAA 59.045 40.909 0.00 0.00 0.00 3.67
3730 3806 3.004629 TGCTTGCATACACAGAAACCAAG 59.995 43.478 0.00 0.00 33.32 3.61
3731 3807 3.568538 CTTGCATACACAGAAACCAAGC 58.431 45.455 0.00 0.00 0.00 4.01
3732 3808 2.580962 TGCATACACAGAAACCAAGCA 58.419 42.857 0.00 0.00 0.00 3.91
3733 3809 2.293122 TGCATACACAGAAACCAAGCAC 59.707 45.455 0.00 0.00 0.00 4.40
3734 3810 2.554032 GCATACACAGAAACCAAGCACT 59.446 45.455 0.00 0.00 0.00 4.40
3735 3811 3.004734 GCATACACAGAAACCAAGCACTT 59.995 43.478 0.00 0.00 0.00 3.16
3736 3812 4.215399 GCATACACAGAAACCAAGCACTTA 59.785 41.667 0.00 0.00 0.00 2.24
3737 3813 5.106157 GCATACACAGAAACCAAGCACTTAT 60.106 40.000 0.00 0.00 0.00 1.73
3739 3815 4.718961 ACACAGAAACCAAGCACTTATCT 58.281 39.130 0.00 0.00 0.00 1.98
3740 3816 4.516698 ACACAGAAACCAAGCACTTATCTG 59.483 41.667 0.00 0.00 38.91 2.90
3741 3817 4.756642 CACAGAAACCAAGCACTTATCTGA 59.243 41.667 15.60 0.00 37.01 3.27
3743 3819 5.827797 ACAGAAACCAAGCACTTATCTGAAA 59.172 36.000 15.60 0.00 37.01 2.69
3744 3820 6.145535 CAGAAACCAAGCACTTATCTGAAAC 58.854 40.000 0.00 0.00 35.91 2.78
3755 3831 6.584954 CACTTATCTGAAACTCAAGACAACG 58.415 40.000 0.00 0.00 0.00 4.10
3772 3848 6.738114 AGACAACGTCAAATCACATCATTTT 58.262 32.000 0.00 0.00 34.60 1.82
3773 3849 7.202526 AGACAACGTCAAATCACATCATTTTT 58.797 30.769 0.00 0.00 34.60 1.94
3780 3857 8.577939 CGTCAAATCACATCATTTTTGTATGTC 58.422 33.333 0.00 0.00 31.60 3.06
3786 3863 8.352137 TCACATCATTTTTGTATGTCCAATCT 57.648 30.769 0.00 0.00 31.60 2.40
3799 3876 4.018490 TGTCCAATCTGTCATCCATTTGG 58.982 43.478 0.00 0.00 37.48 3.28
3827 3904 8.628882 TTGTCTCTACAAATATGTCATACACG 57.371 34.615 0.00 0.00 42.60 4.49
3838 3915 2.227626 TGTCATACACGCCCACAATTTG 59.772 45.455 0.00 0.00 0.00 2.32
3839 3916 2.486203 GTCATACACGCCCACAATTTGA 59.514 45.455 2.79 0.00 0.00 2.69
3840 3917 2.746904 TCATACACGCCCACAATTTGAG 59.253 45.455 2.79 0.00 0.00 3.02
3841 3918 2.552599 TACACGCCCACAATTTGAGA 57.447 45.000 2.79 0.00 0.00 3.27
3842 3919 0.951558 ACACGCCCACAATTTGAGAC 59.048 50.000 2.79 0.00 0.00 3.36
3843 3920 0.950836 CACGCCCACAATTTGAGACA 59.049 50.000 2.79 0.00 0.00 3.41
3844 3921 0.951558 ACGCCCACAATTTGAGACAC 59.048 50.000 2.79 0.00 0.00 3.67
3845 3922 1.238439 CGCCCACAATTTGAGACACT 58.762 50.000 2.79 0.00 0.00 3.55
3846 3923 2.224426 ACGCCCACAATTTGAGACACTA 60.224 45.455 2.79 0.00 0.00 2.74
3847 3924 2.159627 CGCCCACAATTTGAGACACTAC 59.840 50.000 2.79 0.00 0.00 2.73
3848 3925 2.488153 GCCCACAATTTGAGACACTACC 59.512 50.000 2.79 0.00 0.00 3.18
3849 3926 3.810743 GCCCACAATTTGAGACACTACCT 60.811 47.826 2.79 0.00 0.00 3.08
3850 3927 4.398319 CCCACAATTTGAGACACTACCTT 58.602 43.478 2.79 0.00 0.00 3.50
3851 3928 5.556915 CCCACAATTTGAGACACTACCTTA 58.443 41.667 2.79 0.00 0.00 2.69
3852 3929 6.180472 CCCACAATTTGAGACACTACCTTAT 58.820 40.000 2.79 0.00 0.00 1.73
3853 3930 6.659242 CCCACAATTTGAGACACTACCTTATT 59.341 38.462 2.79 0.00 0.00 1.40
3878 3955 5.415221 TGAACAAAGTTTCCACAACAATCC 58.585 37.500 0.00 0.00 0.00 3.01
3885 3962 1.745232 TCCACAACAATCCGGTATGC 58.255 50.000 0.00 0.00 0.00 3.14
3886 3963 1.003696 TCCACAACAATCCGGTATGCA 59.996 47.619 0.00 0.00 0.00 3.96
3897 3974 0.661187 CGGTATGCATCGCCATTTGC 60.661 55.000 17.17 0.00 39.33 3.68
3901 3978 2.717580 ATGCATCGCCATTTGCTATG 57.282 45.000 0.00 0.00 43.95 2.23
3903 3980 1.334556 TGCATCGCCATTTGCTATGAC 59.665 47.619 3.22 0.00 43.86 3.06
3908 3985 5.329493 CATCGCCATTTGCTATGACATATG 58.671 41.667 0.00 0.00 43.86 1.78
3909 3986 4.388485 TCGCCATTTGCTATGACATATGT 58.612 39.130 8.43 8.43 38.05 2.29
3932 4009 4.381411 ACACAGAGAACTTACAAGCCTTC 58.619 43.478 0.00 0.00 0.00 3.46
3935 4012 4.816925 ACAGAGAACTTACAAGCCTTCAAC 59.183 41.667 0.00 0.00 0.00 3.18
3941 4018 1.604604 TACAAGCCTTCAACAGCACC 58.395 50.000 0.00 0.00 0.00 5.01
3943 4020 0.031178 CAAGCCTTCAACAGCACCAC 59.969 55.000 0.00 0.00 0.00 4.16
3947 4024 1.603678 GCCTTCAACAGCACCACAATG 60.604 52.381 0.00 0.00 0.00 2.82
3963 4040 4.379290 CCACAATGTCACATGTAATTGCGA 60.379 41.667 20.01 3.31 34.13 5.10
3968 4045 5.878332 TGTCACATGTAATTGCGAGAATT 57.122 34.783 0.00 0.00 0.00 2.17
3972 4049 5.065090 TCACATGTAATTGCGAGAATTCCAG 59.935 40.000 0.00 0.00 0.00 3.86
4017 4094 6.152323 TGTCTTCATACCTACCAAGTGAGTAC 59.848 42.308 0.00 0.00 0.00 2.73
4020 4097 1.948391 ACCTACCAAGTGAGTACCCC 58.052 55.000 0.00 0.00 0.00 4.95
4038 4115 1.010935 CCGCAGCAGGTATATCAGCG 61.011 60.000 0.00 0.00 42.93 5.18
4110 4187 6.358974 TCAAGGATCTTGTCATGTTCAGTA 57.641 37.500 7.42 0.00 0.00 2.74
4131 4208 7.939039 TCAGTAACAAAATCTGGAATCTCAACT 59.061 33.333 0.00 0.00 0.00 3.16
4134 4211 7.587037 AACAAAATCTGGAATCTCAACTTCA 57.413 32.000 0.00 0.00 0.00 3.02
4143 4220 5.068987 TGGAATCTCAACTTCACCCTTTTTG 59.931 40.000 0.00 0.00 0.00 2.44
4169 4246 0.898320 CCCCATAGATACTCCAGCCG 59.102 60.000 0.00 0.00 0.00 5.52
4314 4878 9.988815 ATGTTCCATCAATATCTAGTCAAGTAC 57.011 33.333 0.00 0.00 0.00 2.73
4334 4898 3.864243 ACACAAGACTGAACCGTAACAA 58.136 40.909 0.00 0.00 0.00 2.83
4372 4936 3.057033 AGTTGATGGTCTCTGCAATTTGC 60.057 43.478 14.49 14.49 45.29 3.68
4373 4937 2.799017 TGATGGTCTCTGCAATTTGCT 58.201 42.857 21.19 0.00 45.31 3.91
4387 4951 6.380995 TGCAATTTGCTTGTCACAAGTATAG 58.619 36.000 18.89 6.17 45.31 1.31
4395 4959 8.703604 TGCTTGTCACAAGTATAGATTACTTC 57.296 34.615 18.89 0.00 35.76 3.01
4415 4979 5.824624 ACTTCTTACGATTCATGAATGGCAT 59.175 36.000 25.37 11.52 37.85 4.40
4438 5002 0.251787 ACAACCCTGGAAGCCCATTC 60.252 55.000 0.00 0.00 42.59 2.67
4456 5020 5.816777 CCCATTCGGCAAAATTATTCACAAT 59.183 36.000 0.00 0.00 0.00 2.71
4471 5035 9.927081 ATTATTCACAATCCAGAGAAGGTAAAT 57.073 29.630 0.00 0.00 0.00 1.40
4537 5101 1.321474 TGTTGGAAGCAAGCTCCTTG 58.679 50.000 4.49 0.74 43.57 3.61
4538 5102 1.322442 GTTGGAAGCAAGCTCCTTGT 58.678 50.000 4.49 0.00 42.77 3.16
4539 5103 2.158682 TGTTGGAAGCAAGCTCCTTGTA 60.159 45.455 4.49 0.00 42.77 2.41
4540 5104 2.884639 GTTGGAAGCAAGCTCCTTGTAA 59.115 45.455 4.49 0.00 42.77 2.41
4541 5105 3.222173 TGGAAGCAAGCTCCTTGTAAA 57.778 42.857 4.49 0.00 42.77 2.01
4542 5106 3.561143 TGGAAGCAAGCTCCTTGTAAAA 58.439 40.909 4.49 0.00 42.77 1.52
4543 5107 4.151883 TGGAAGCAAGCTCCTTGTAAAAT 58.848 39.130 4.49 0.00 42.77 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.795441 GCGACCAAATAAGAGTTTGACATTC 59.205 40.000 1.24 0.00 40.64 2.67
1 2 5.240623 TGCGACCAAATAAGAGTTTGACATT 59.759 36.000 1.24 0.00 40.64 2.71
2 3 4.759693 TGCGACCAAATAAGAGTTTGACAT 59.240 37.500 1.24 0.00 40.64 3.06
3 4 4.130857 TGCGACCAAATAAGAGTTTGACA 58.869 39.130 1.24 0.00 40.64 3.58
4 5 4.742438 TGCGACCAAATAAGAGTTTGAC 57.258 40.909 1.24 0.00 40.64 3.18
5 6 5.957842 ATTGCGACCAAATAAGAGTTTGA 57.042 34.783 1.24 0.00 40.64 2.69
6 7 8.612619 ACTATATTGCGACCAAATAAGAGTTTG 58.387 33.333 0.00 0.00 38.50 2.93
7 8 8.732746 ACTATATTGCGACCAAATAAGAGTTT 57.267 30.769 0.00 0.00 34.05 2.66
14 15 5.853936 AGCTGACTATATTGCGACCAAATA 58.146 37.500 0.00 0.00 34.05 1.40
21 22 2.625314 AGCTGAGCTGACTATATTGCGA 59.375 45.455 5.97 0.00 37.57 5.10
22 23 3.023946 AGCTGAGCTGACTATATTGCG 57.976 47.619 5.97 0.00 37.57 4.85
25 26 4.133078 GCCAAAGCTGAGCTGACTATATT 58.867 43.478 8.16 0.00 39.62 1.28
28 29 2.035530 GCCAAAGCTGAGCTGACTAT 57.964 50.000 8.16 0.00 39.62 2.12
44 45 2.589540 CAATGACGGGGCTAGCCA 59.410 61.111 34.09 14.82 37.98 4.75
45 46 2.203209 CCAATGACGGGGCTAGCC 60.203 66.667 26.55 26.55 0.00 3.93
59 60 2.197283 TGTACACATGCATGCTCCAA 57.803 45.000 26.53 7.22 0.00 3.53
60 61 2.423446 ATGTACACATGCATGCTCCA 57.577 45.000 26.53 17.24 34.83 3.86
61 62 4.067192 TCATATGTACACATGCATGCTCC 58.933 43.478 26.53 12.26 37.15 4.70
62 63 5.678132 TTCATATGTACACATGCATGCTC 57.322 39.130 26.53 14.00 37.15 4.26
69 70 8.314143 TGCATCACTATTCATATGTACACATG 57.686 34.615 7.85 7.85 37.15 3.21
70 71 7.605309 CCTGCATCACTATTCATATGTACACAT 59.395 37.037 0.00 0.00 40.22 3.21
76 77 6.296087 CCCTACCTGCATCACTATTCATATGT 60.296 42.308 1.90 0.00 0.00 2.29
93 94 2.603008 CCCCAATGGCCCTACCTG 59.397 66.667 0.00 0.00 40.22 4.00
144 146 3.256631 GGTTGGATGCTCTCACATGTTTT 59.743 43.478 0.00 0.00 0.00 2.43
146 148 2.040813 AGGTTGGATGCTCTCACATGTT 59.959 45.455 0.00 0.00 0.00 2.71
147 149 1.632409 AGGTTGGATGCTCTCACATGT 59.368 47.619 0.00 0.00 0.00 3.21
148 150 2.414994 AGGTTGGATGCTCTCACATG 57.585 50.000 0.00 0.00 0.00 3.21
149 151 3.776969 TCTAAGGTTGGATGCTCTCACAT 59.223 43.478 0.00 0.00 0.00 3.21
150 152 3.173151 TCTAAGGTTGGATGCTCTCACA 58.827 45.455 0.00 0.00 0.00 3.58
151 153 3.895232 TCTAAGGTTGGATGCTCTCAC 57.105 47.619 0.00 0.00 0.00 3.51
152 154 3.389329 GGATCTAAGGTTGGATGCTCTCA 59.611 47.826 1.08 0.00 34.49 3.27
153 155 3.244387 GGGATCTAAGGTTGGATGCTCTC 60.244 52.174 7.36 0.00 36.86 3.20
154 156 2.708325 GGGATCTAAGGTTGGATGCTCT 59.292 50.000 7.36 0.00 36.86 4.09
155 157 2.708325 AGGGATCTAAGGTTGGATGCTC 59.292 50.000 7.36 0.00 36.86 4.26
173 175 5.505780 TGATGGTGGAAATACAACTTAGGG 58.494 41.667 0.00 0.00 0.00 3.53
174 176 6.432783 TGTTGATGGTGGAAATACAACTTAGG 59.567 38.462 0.00 0.00 38.51 2.69
207 209 9.856162 AAGGTCCACTATGTAAAAGTAAGAAAA 57.144 29.630 0.00 0.00 0.00 2.29
214 216 9.227777 GTTCATAAAGGTCCACTATGTAAAAGT 57.772 33.333 9.08 0.00 0.00 2.66
220 222 7.827729 GGTTTAGTTCATAAAGGTCCACTATGT 59.172 37.037 9.08 0.00 34.01 2.29
233 235 5.636123 TCTTTGGCCTGGTTTAGTTCATAA 58.364 37.500 3.32 0.00 0.00 1.90
234 236 5.249780 TCTTTGGCCTGGTTTAGTTCATA 57.750 39.130 3.32 0.00 0.00 2.15
237 239 4.809673 CAATCTTTGGCCTGGTTTAGTTC 58.190 43.478 3.32 0.00 0.00 3.01
250 252 1.755179 ATCTCCACGGCAATCTTTGG 58.245 50.000 0.00 0.00 0.00 3.28
260 262 1.026718 GGTCTTGCCAATCTCCACGG 61.027 60.000 0.00 0.00 37.17 4.94
280 282 0.800683 TCGTCGCCAAGAATAGCACG 60.801 55.000 0.00 0.00 35.95 5.34
283 285 2.286418 CCATTTCGTCGCCAAGAATAGC 60.286 50.000 0.00 0.00 0.00 2.97
285 287 2.980568 ACCATTTCGTCGCCAAGAATA 58.019 42.857 0.00 0.00 0.00 1.75
317 319 9.850628 CAATCTGATCATAAGTGAATGTTGTTT 57.149 29.630 0.00 0.00 38.01 2.83
322 324 7.799081 TCTCCAATCTGATCATAAGTGAATGT 58.201 34.615 0.00 0.00 38.01 2.71
325 327 7.772292 CCTTTCTCCAATCTGATCATAAGTGAA 59.228 37.037 0.00 0.00 38.01 3.18
329 331 6.060136 TGCCTTTCTCCAATCTGATCATAAG 58.940 40.000 0.00 0.00 0.00 1.73
340 342 0.393537 CTCGCCTGCCTTTCTCCAAT 60.394 55.000 0.00 0.00 0.00 3.16
357 359 6.992063 TCTTGATTTATCTTGGCTTGTCTC 57.008 37.500 0.00 0.00 0.00 3.36
358 360 7.170965 TCTTCTTGATTTATCTTGGCTTGTCT 58.829 34.615 0.00 0.00 0.00 3.41
362 364 7.318893 GCTTTCTTCTTGATTTATCTTGGCTT 58.681 34.615 0.00 0.00 0.00 4.35
364 366 5.741040 CGCTTTCTTCTTGATTTATCTTGGC 59.259 40.000 0.00 0.00 0.00 4.52
367 369 5.358160 CCCCGCTTTCTTCTTGATTTATCTT 59.642 40.000 0.00 0.00 0.00 2.40
368 370 4.884164 CCCCGCTTTCTTCTTGATTTATCT 59.116 41.667 0.00 0.00 0.00 1.98
369 371 4.036852 CCCCCGCTTTCTTCTTGATTTATC 59.963 45.833 0.00 0.00 0.00 1.75
393 395 2.003301 CCCTTTGAGCTTCTCTTACGC 58.997 52.381 0.00 0.00 0.00 4.42
395 397 4.249661 CTCACCCTTTGAGCTTCTCTTAC 58.750 47.826 0.00 0.00 45.51 2.34
409 411 3.103080 ACCGTCTAGAATCTCACCCTT 57.897 47.619 0.00 0.00 0.00 3.95
439 441 7.044314 GCAATTCCATTATTACCGTTTTTCGAG 60.044 37.037 0.00 0.00 42.86 4.04
440 442 6.748198 GCAATTCCATTATTACCGTTTTTCGA 59.252 34.615 0.00 0.00 42.86 3.71
443 445 8.663911 CATTGCAATTCCATTATTACCGTTTTT 58.336 29.630 9.83 0.00 0.00 1.94
448 450 4.685628 GGCATTGCAATTCCATTATTACCG 59.314 41.667 21.43 2.08 0.00 4.02
462 465 0.319727 CTTTTCGGCTGGCATTGCAA 60.320 50.000 11.39 0.00 0.00 4.08
473 476 1.002792 GGTCACACAACTCTTTTCGGC 60.003 52.381 0.00 0.00 0.00 5.54
487 490 1.144691 TTTGACATGGAGGGGTCACA 58.855 50.000 0.00 0.00 43.22 3.58
490 493 6.238648 CGTTTTATATTTGACATGGAGGGGTC 60.239 42.308 0.00 0.00 34.63 4.46
492 495 5.592688 ACGTTTTATATTTGACATGGAGGGG 59.407 40.000 0.00 0.00 0.00 4.79
493 496 6.693315 ACGTTTTATATTTGACATGGAGGG 57.307 37.500 0.00 0.00 0.00 4.30
494 497 8.980143 AAAACGTTTTATATTTGACATGGAGG 57.020 30.769 24.13 0.00 0.00 4.30
521 524 7.067496 ACTACCTCTCTCAATTTGAACTGAA 57.933 36.000 0.01 0.00 0.00 3.02
522 525 6.672266 ACTACCTCTCTCAATTTGAACTGA 57.328 37.500 0.01 0.00 0.00 3.41
537 540 5.701290 GCAGACATTGTTTTGTACTACCTCT 59.299 40.000 0.00 0.00 0.00 3.69
572 575 1.670791 AACAAACACGATCCAACGGT 58.329 45.000 0.00 0.00 37.61 4.83
597 600 3.495806 CCCATGGAGAGCAGATCCTAAAC 60.496 52.174 15.22 0.00 37.74 2.01
598 601 2.707791 CCCATGGAGAGCAGATCCTAAA 59.292 50.000 15.22 0.00 37.74 1.85
599 602 2.090550 TCCCATGGAGAGCAGATCCTAA 60.091 50.000 15.22 0.00 37.74 2.69
600 603 1.505098 TCCCATGGAGAGCAGATCCTA 59.495 52.381 15.22 0.00 37.74 2.94
604 607 3.967467 AAAATCCCATGGAGAGCAGAT 57.033 42.857 15.22 2.90 34.05 2.90
662 669 3.636679 TGTTTGTTTGGATTGGACTGGA 58.363 40.909 0.00 0.00 0.00 3.86
690 697 4.502558 CGAAAATATCCGTGCTACGTTTC 58.497 43.478 0.00 8.74 40.58 2.78
695 702 2.470257 CGACCGAAAATATCCGTGCTAC 59.530 50.000 0.00 0.00 0.00 3.58
702 709 3.750639 TGTTTGCGACCGAAAATATCC 57.249 42.857 0.00 0.00 0.00 2.59
755 762 2.607811 ATGGACGCTCCTCCATCAA 58.392 52.632 0.00 0.00 46.54 2.57
768 775 1.926511 CTGCTGCCGTTTGGATGGAC 61.927 60.000 0.00 0.00 37.49 4.02
898 905 4.742201 CACACGGGTCTGGCGAGG 62.742 72.222 0.00 0.00 0.00 4.63
942 949 2.103263 AGAGTGGTGAGACTGTTTGGAC 59.897 50.000 0.00 0.00 0.00 4.02
952 959 1.979155 CGGCTGGAGAGTGGTGAGA 60.979 63.158 0.00 0.00 0.00 3.27
1215 1223 2.125106 GCGTTGGAGGCGAGGATT 60.125 61.111 0.00 0.00 0.00 3.01
1245 1253 1.530771 CAGATTGGGGAGGAGCAGG 59.469 63.158 0.00 0.00 0.00 4.85
1247 1255 1.210204 AAGCAGATTGGGGAGGAGCA 61.210 55.000 0.00 0.00 0.00 4.26
1249 1257 0.914644 TCAAGCAGATTGGGGAGGAG 59.085 55.000 0.00 0.00 39.54 3.69
1250 1258 0.620556 GTCAAGCAGATTGGGGAGGA 59.379 55.000 0.00 0.00 39.54 3.71
1252 1269 0.622665 AGGTCAAGCAGATTGGGGAG 59.377 55.000 0.00 0.00 39.54 4.30
1264 1281 2.692741 GGGGAGGGGGAGGTCAAG 60.693 72.222 0.00 0.00 0.00 3.02
1281 1298 1.677637 GCTTCGAGTACAGGGGGAGG 61.678 65.000 0.00 0.00 0.00 4.30
1283 1300 0.970937 CTGCTTCGAGTACAGGGGGA 60.971 60.000 0.00 0.00 0.00 4.81
1284 1301 1.517832 CTGCTTCGAGTACAGGGGG 59.482 63.158 0.00 0.00 0.00 5.40
1285 1302 1.153549 GCTGCTTCGAGTACAGGGG 60.154 63.158 11.78 0.00 31.94 4.79
1290 1307 0.670546 TGCTTGGCTGCTTCGAGTAC 60.671 55.000 0.00 0.00 0.00 2.73
1326 1343 2.299013 AGGCTTGAACACGTGATAGACA 59.701 45.455 25.01 11.15 0.00 3.41
1327 1344 2.668457 CAGGCTTGAACACGTGATAGAC 59.332 50.000 25.01 14.74 0.00 2.59
1328 1345 2.560981 TCAGGCTTGAACACGTGATAGA 59.439 45.455 25.01 4.43 0.00 1.98
1329 1346 2.668457 GTCAGGCTTGAACACGTGATAG 59.332 50.000 25.01 13.65 34.49 2.08
1330 1347 2.036604 TGTCAGGCTTGAACACGTGATA 59.963 45.455 25.01 4.71 34.49 2.15
1331 1348 1.202639 TGTCAGGCTTGAACACGTGAT 60.203 47.619 25.01 11.26 34.49 3.06
1332 1349 0.176910 TGTCAGGCTTGAACACGTGA 59.823 50.000 25.01 0.00 34.49 4.35
1333 1350 1.229428 ATGTCAGGCTTGAACACGTG 58.771 50.000 15.48 15.48 34.49 4.49
1392 1415 0.793478 CGCTGTCGTCGACAACCTAG 60.793 60.000 26.79 16.55 42.26 3.02
1458 1481 7.813148 GCGATTGACTGAGGCTAATAATACTAA 59.187 37.037 0.00 0.00 0.00 2.24
1473 1497 4.284123 GCACCAGCGATTGACTGA 57.716 55.556 6.09 0.00 37.32 3.41
1493 1528 0.660488 TGAGCACAAACGTTTGCGAT 59.340 45.000 34.70 27.20 43.87 4.58
1508 1543 4.093556 GGACTAGCAAACACTATGTTGAGC 59.906 45.833 9.95 9.95 40.14 4.26
1512 1547 4.286032 TCAGGGACTAGCAAACACTATGTT 59.714 41.667 0.00 0.00 38.93 2.71
1520 1555 2.504367 TGCTTTCAGGGACTAGCAAAC 58.496 47.619 0.00 0.00 40.39 2.93
1566 1602 2.160417 CACGCAAAACAAAAGCCCAAAA 59.840 40.909 0.00 0.00 0.00 2.44
1601 1638 7.718525 TCACTGCAATTTCATATATGTGCATT 58.281 30.769 22.00 16.49 40.86 3.56
1602 1639 7.279750 TCACTGCAATTTCATATATGTGCAT 57.720 32.000 22.00 13.27 40.86 3.96
1603 1640 6.696441 TCACTGCAATTTCATATATGTGCA 57.304 33.333 21.01 21.01 39.53 4.57
1604 1641 6.143438 GCTTCACTGCAATTTCATATATGTGC 59.857 38.462 15.58 15.58 0.00 4.57
1605 1642 7.197703 TGCTTCACTGCAATTTCATATATGTG 58.802 34.615 12.42 4.84 40.29 3.21
1606 1643 7.337480 TGCTTCACTGCAATTTCATATATGT 57.663 32.000 12.42 0.00 40.29 2.29
1607 1644 6.861572 CCTGCTTCACTGCAATTTCATATATG 59.138 38.462 6.36 6.36 42.83 1.78
1608 1645 6.548622 ACCTGCTTCACTGCAATTTCATATAT 59.451 34.615 0.00 0.00 42.83 0.86
1609 1646 5.887598 ACCTGCTTCACTGCAATTTCATATA 59.112 36.000 0.00 0.00 42.83 0.86
1676 1719 1.676635 GCCAGCAGCAATGGAGACA 60.677 57.895 4.83 0.00 44.14 3.41
1700 1744 4.456911 TGACTGACCTGCAAATCTTTCATC 59.543 41.667 0.00 0.00 0.00 2.92
1727 1775 1.398390 GCTGAGTAAACCCTGAATGCG 59.602 52.381 0.00 0.00 0.00 4.73
1745 1793 2.616842 CACCAGTTAACAACGGAAAGCT 59.383 45.455 8.61 0.00 36.23 3.74
1750 1798 4.062293 CTGAATCACCAGTTAACAACGGA 58.938 43.478 8.61 0.60 36.23 4.69
1752 1800 3.188460 CCCTGAATCACCAGTTAACAACG 59.812 47.826 8.61 0.00 36.23 4.10
1753 1801 4.142038 ACCCTGAATCACCAGTTAACAAC 58.858 43.478 8.61 0.00 32.43 3.32
1754 1802 4.447138 ACCCTGAATCACCAGTTAACAA 57.553 40.909 8.61 0.00 32.43 2.83
1755 1803 5.772393 ATACCCTGAATCACCAGTTAACA 57.228 39.130 8.61 0.00 32.43 2.41
1756 1804 6.093633 GTGAATACCCTGAATCACCAGTTAAC 59.906 42.308 0.00 0.00 36.94 2.01
1762 1810 3.622206 GCAGTGAATACCCTGAATCACCA 60.622 47.826 0.00 0.00 42.39 4.17
1795 1843 8.637196 TCTTCTCGATTGGAATATAGCTAGAA 57.363 34.615 0.00 0.00 0.00 2.10
1800 1848 5.350091 GGCTTCTTCTCGATTGGAATATAGC 59.650 44.000 0.00 0.00 0.00 2.97
1801 1849 6.459066 TGGCTTCTTCTCGATTGGAATATAG 58.541 40.000 0.00 0.00 0.00 1.31
1802 1850 6.419484 TGGCTTCTTCTCGATTGGAATATA 57.581 37.500 0.00 0.00 0.00 0.86
1813 1861 1.396301 GCATCAGTTGGCTTCTTCTCG 59.604 52.381 0.00 0.00 0.00 4.04
1825 1873 6.263842 CCATATACAGAAACATGGCATCAGTT 59.736 38.462 0.00 0.00 32.12 3.16
1843 1891 3.838244 TGTCCAGCTCAACCCATATAC 57.162 47.619 0.00 0.00 0.00 1.47
1845 1893 2.779430 TCATGTCCAGCTCAACCCATAT 59.221 45.455 0.00 0.00 0.00 1.78
1986 2041 3.656559 TCGGCTTGGTAAGTTGTACTTC 58.343 45.455 0.00 0.00 39.51 3.01
1992 2047 3.195661 GGAGTATCGGCTTGGTAAGTTG 58.804 50.000 0.00 0.00 34.37 3.16
2005 2060 9.093970 TCCGCAAATTATATAAATGGAGTATCG 57.906 33.333 0.00 1.17 34.37 2.92
2009 2064 6.942576 AGCTCCGCAAATTATATAAATGGAGT 59.057 34.615 20.80 12.24 0.00 3.85
2023 2078 4.881019 ATCTACTCATAGCTCCGCAAAT 57.119 40.909 0.00 0.00 0.00 2.32
2037 2092 8.933807 GGTAAGGTGAACTTTACAAATCTACTC 58.066 37.037 14.91 0.00 39.34 2.59
2039 2094 8.611654 TGGTAAGGTGAACTTTACAAATCTAC 57.388 34.615 14.91 0.38 39.34 2.59
2078 2133 5.643379 TCTGGTAGCTGCTTTTATTTTGG 57.357 39.130 7.79 0.00 0.00 3.28
2130 2185 3.612479 GCATGGCTCAACTTTGGTACTTG 60.612 47.826 0.00 0.00 0.00 3.16
2166 2221 8.653036 ACTCAAGTGGTAGTCTTATTCTTAGT 57.347 34.615 0.00 0.00 0.00 2.24
2377 2434 8.615211 ACAATATCAGCATTATGTGTGTAGTTG 58.385 33.333 0.00 2.97 0.00 3.16
2386 2443 8.859236 ATAGCTTCACAATATCAGCATTATGT 57.141 30.769 0.00 0.00 34.49 2.29
2387 2444 8.943002 TGATAGCTTCACAATATCAGCATTATG 58.057 33.333 0.00 0.00 32.41 1.90
2388 2445 9.163899 CTGATAGCTTCACAATATCAGCATTAT 57.836 33.333 7.31 0.00 43.37 1.28
2389 2446 8.543862 CTGATAGCTTCACAATATCAGCATTA 57.456 34.615 7.31 0.00 43.37 1.90
2390 2447 7.436430 CTGATAGCTTCACAATATCAGCATT 57.564 36.000 7.31 0.00 43.37 3.56
2395 2452 6.763135 GGTCAACTGATAGCTTCACAATATCA 59.237 38.462 0.00 0.00 35.29 2.15
2396 2453 6.074088 CGGTCAACTGATAGCTTCACAATATC 60.074 42.308 0.00 0.00 0.00 1.63
2407 2472 3.684788 ACACAATTCGGTCAACTGATAGC 59.315 43.478 0.00 0.00 0.00 2.97
2518 2584 6.884295 TCGAATCCTTGACATTTCAATTAGGT 59.116 34.615 0.00 0.00 41.05 3.08
2541 2607 7.593644 ACCGGATTTTGAAGATTTTAAAAGTCG 59.406 33.333 9.46 0.00 28.72 4.18
2542 2608 8.812147 ACCGGATTTTGAAGATTTTAAAAGTC 57.188 30.769 9.46 4.76 0.00 3.01
2544 2610 8.915654 CAGACCGGATTTTGAAGATTTTAAAAG 58.084 33.333 9.46 0.00 0.00 2.27
2562 2628 4.214986 TGAATCAATAAAGCAGACCGGA 57.785 40.909 9.46 0.00 0.00 5.14
2563 2629 5.505173 AATGAATCAATAAAGCAGACCGG 57.495 39.130 0.00 0.00 0.00 5.28
2639 2705 7.279750 TGGTAGTCATTTTACTGGAAAAACC 57.720 36.000 1.25 5.53 40.39 3.27
2645 2712 6.878923 CACAGAATGGTAGTCATTTTACTGGA 59.121 38.462 0.00 0.00 45.36 3.86
2691 2758 5.362430 TCCACCAGCAACAAAATTTCTACTT 59.638 36.000 0.00 0.00 0.00 2.24
2692 2759 4.892934 TCCACCAGCAACAAAATTTCTACT 59.107 37.500 0.00 0.00 0.00 2.57
2727 2795 7.217200 TGGCATATTTCTAGTGATACAACCTC 58.783 38.462 0.00 0.00 0.00 3.85
2746 2814 8.530311 AGAAACATATGTGTGAAAAATGGCATA 58.470 29.630 9.63 0.00 38.92 3.14
2792 2860 2.497675 TCTCCCAGACACATCACTAAGC 59.502 50.000 0.00 0.00 0.00 3.09
2817 2885 3.312697 GGTTTTCATCATTCTCGGTAGCC 59.687 47.826 0.00 0.00 0.00 3.93
2823 2891 3.431912 TGACACGGTTTTCATCATTCTCG 59.568 43.478 0.00 0.00 0.00 4.04
2829 2897 3.380004 AGCTTTTGACACGGTTTTCATCA 59.620 39.130 0.00 0.00 0.00 3.07
2945 3013 3.973425 ACTCTTGGCATTGCTTCCTTAT 58.027 40.909 8.82 0.00 0.00 1.73
2959 3027 1.656652 CAATCACGGCCTACTCTTGG 58.343 55.000 0.00 0.00 0.00 3.61
2973 3041 4.156556 GCATGTTAACTCTTGAGCCAATCA 59.843 41.667 7.22 0.00 35.62 2.57
2987 3055 9.585099 TTCAAATAGATGGAAATGCATGTTAAC 57.415 29.630 0.00 0.00 0.00 2.01
3257 3325 7.551035 ACTGCAAACTTGAGATCAGAATATC 57.449 36.000 0.00 0.00 0.00 1.63
3258 3326 9.270640 GATACTGCAAACTTGAGATCAGAATAT 57.729 33.333 0.00 0.00 0.00 1.28
3259 3327 7.712639 GGATACTGCAAACTTGAGATCAGAATA 59.287 37.037 0.00 0.00 0.00 1.75
3260 3328 6.541641 GGATACTGCAAACTTGAGATCAGAAT 59.458 38.462 0.00 0.00 0.00 2.40
3261 3329 5.877012 GGATACTGCAAACTTGAGATCAGAA 59.123 40.000 0.00 0.00 0.00 3.02
3291 3359 8.394971 ACATGTAGAAGATCAACAAATGACAA 57.605 30.769 0.00 0.00 41.93 3.18
3292 3360 7.984422 ACATGTAGAAGATCAACAAATGACA 57.016 32.000 0.00 0.00 41.93 3.58
3305 3373 7.962995 AGAGGTAATGAGAACATGTAGAAGA 57.037 36.000 0.00 0.00 36.79 2.87
3315 3383 9.994432 CATATGACAAAAAGAGGTAATGAGAAC 57.006 33.333 0.00 0.00 0.00 3.01
3399 3467 1.523258 CTGATCCTTCAGCTGCCCG 60.523 63.158 9.47 0.00 42.79 6.13
3544 3612 7.072454 ACAATGGCTACCAGGATTATAAGAAGA 59.928 37.037 0.00 0.00 36.75 2.87
3546 3614 7.149202 ACAATGGCTACCAGGATTATAAGAA 57.851 36.000 0.00 0.00 36.75 2.52
3556 3624 4.618227 GCAAAACTAACAATGGCTACCAGG 60.618 45.833 0.00 0.00 36.75 4.45
3559 3627 4.783764 AGCAAAACTAACAATGGCTACC 57.216 40.909 0.00 0.00 0.00 3.18
3567 3635 5.216648 GCGGAATTGTAGCAAAACTAACAA 58.783 37.500 0.00 0.00 30.90 2.83
3569 3637 4.789784 TGCGGAATTGTAGCAAAACTAAC 58.210 39.130 0.00 0.00 38.01 2.34
3588 3656 6.117911 TCATGTCTACACCATTTTATTGCG 57.882 37.500 0.00 0.00 0.00 4.85
3637 3707 6.149474 AGGAAAATATGTCGAGAACCTGTTTG 59.851 38.462 0.00 0.00 0.00 2.93
3643 3713 4.514401 ACCAGGAAAATATGTCGAGAACC 58.486 43.478 0.00 0.00 0.00 3.62
3650 3720 5.525378 CACAGCTAGACCAGGAAAATATGTC 59.475 44.000 0.00 0.00 0.00 3.06
3660 3730 1.552337 ACATCACACAGCTAGACCAGG 59.448 52.381 0.00 0.00 0.00 4.45
3689 3765 2.419021 GCACAGGTTAATGCATGCCAAT 60.419 45.455 16.68 0.00 41.65 3.16
3698 3774 4.082841 TGTGTATGCAAGCACAGGTTAATG 60.083 41.667 18.72 0.00 40.24 1.90
3720 3796 5.947228 TTCAGATAAGTGCTTGGTTTCTG 57.053 39.130 0.00 0.00 0.00 3.02
3721 3797 6.064717 AGTTTCAGATAAGTGCTTGGTTTCT 58.935 36.000 0.00 0.00 0.00 2.52
3723 3799 5.827797 TGAGTTTCAGATAAGTGCTTGGTTT 59.172 36.000 0.00 0.00 0.00 3.27
3725 3801 4.973168 TGAGTTTCAGATAAGTGCTTGGT 58.027 39.130 0.00 0.00 0.00 3.67
3727 3803 6.203530 TGTCTTGAGTTTCAGATAAGTGCTTG 59.796 38.462 0.00 0.00 0.00 4.01
3729 3805 5.858381 TGTCTTGAGTTTCAGATAAGTGCT 58.142 37.500 0.00 0.00 0.00 4.40
3730 3806 6.366630 GTTGTCTTGAGTTTCAGATAAGTGC 58.633 40.000 0.00 0.00 0.00 4.40
3731 3807 6.201044 ACGTTGTCTTGAGTTTCAGATAAGTG 59.799 38.462 0.00 0.00 0.00 3.16
3732 3808 6.281405 ACGTTGTCTTGAGTTTCAGATAAGT 58.719 36.000 0.00 0.00 0.00 2.24
3733 3809 6.420903 TGACGTTGTCTTGAGTTTCAGATAAG 59.579 38.462 0.00 0.00 33.15 1.73
3734 3810 6.277605 TGACGTTGTCTTGAGTTTCAGATAA 58.722 36.000 0.00 0.00 33.15 1.75
3735 3811 5.838529 TGACGTTGTCTTGAGTTTCAGATA 58.161 37.500 0.00 0.00 33.15 1.98
3736 3812 4.693283 TGACGTTGTCTTGAGTTTCAGAT 58.307 39.130 0.00 0.00 33.15 2.90
3737 3813 4.118093 TGACGTTGTCTTGAGTTTCAGA 57.882 40.909 0.00 0.00 33.15 3.27
3739 3815 5.352846 TGATTTGACGTTGTCTTGAGTTTCA 59.647 36.000 0.00 0.00 33.15 2.69
3740 3816 5.677178 GTGATTTGACGTTGTCTTGAGTTTC 59.323 40.000 0.00 0.00 33.15 2.78
3741 3817 5.123186 TGTGATTTGACGTTGTCTTGAGTTT 59.877 36.000 0.00 0.00 33.15 2.66
3743 3819 4.188462 TGTGATTTGACGTTGTCTTGAGT 58.812 39.130 0.00 0.00 33.15 3.41
3744 3820 4.794248 TGTGATTTGACGTTGTCTTGAG 57.206 40.909 0.00 0.00 33.15 3.02
3755 3831 8.863049 GGACATACAAAAATGATGTGATTTGAC 58.137 33.333 4.30 0.00 36.52 3.18
3772 3848 5.434182 TGGATGACAGATTGGACATACAA 57.566 39.130 0.00 0.00 30.59 2.41
3773 3849 5.635278 ATGGATGACAGATTGGACATACA 57.365 39.130 0.00 0.00 35.13 2.29
3786 3863 6.065976 AGAGACAATACCAAATGGATGACA 57.934 37.500 6.42 0.00 38.94 3.58
3827 3904 2.488153 GGTAGTGTCTCAAATTGTGGGC 59.512 50.000 0.00 0.00 0.00 5.36
3838 3915 9.654663 ACTTTGTTCATAATAAGGTAGTGTCTC 57.345 33.333 0.00 0.00 0.00 3.36
3843 3920 9.802039 TGGAAACTTTGTTCATAATAAGGTAGT 57.198 29.630 0.00 0.00 0.00 2.73
3845 3922 9.575868 TGTGGAAACTTTGTTCATAATAAGGTA 57.424 29.630 0.00 0.00 0.00 3.08
3846 3923 8.472007 TGTGGAAACTTTGTTCATAATAAGGT 57.528 30.769 0.00 0.00 0.00 3.50
3847 3924 9.191995 GTTGTGGAAACTTTGTTCATAATAAGG 57.808 33.333 0.00 0.00 0.00 2.69
3848 3925 9.743057 TGTTGTGGAAACTTTGTTCATAATAAG 57.257 29.630 0.00 0.00 0.00 1.73
3851 3928 9.260002 GATTGTTGTGGAAACTTTGTTCATAAT 57.740 29.630 0.00 0.00 0.00 1.28
3852 3929 7.708752 GGATTGTTGTGGAAACTTTGTTCATAA 59.291 33.333 0.00 0.00 0.00 1.90
3853 3930 7.206687 GGATTGTTGTGGAAACTTTGTTCATA 58.793 34.615 0.00 0.00 0.00 2.15
3878 3955 0.661187 GCAAATGGCGATGCATACCG 60.661 55.000 0.00 0.30 42.12 4.02
3901 3978 8.981724 TTGTAAGTTCTCTGTGTACATATGTC 57.018 34.615 12.68 5.06 0.00 3.06
3903 3980 7.010552 GGCTTGTAAGTTCTCTGTGTACATATG 59.989 40.741 0.00 0.00 0.00 1.78
3908 3985 4.884247 AGGCTTGTAAGTTCTCTGTGTAC 58.116 43.478 0.00 0.00 0.00 2.90
3909 3986 5.069914 TGAAGGCTTGTAAGTTCTCTGTGTA 59.930 40.000 3.46 0.00 0.00 2.90
3924 4001 0.031178 GTGGTGCTGTTGAAGGCTTG 59.969 55.000 3.46 0.00 0.00 4.01
3932 4009 1.404748 TGTGACATTGTGGTGCTGTTG 59.595 47.619 0.00 0.00 0.00 3.33
3935 4012 1.610038 ACATGTGACATTGTGGTGCTG 59.390 47.619 0.00 0.00 0.00 4.41
3941 4018 4.721142 TCGCAATTACATGTGACATTGTG 58.279 39.130 22.51 22.51 38.12 3.33
3943 4020 5.220557 TCTCGCAATTACATGTGACATTG 57.779 39.130 9.11 14.31 35.04 2.82
3947 4024 5.163764 TGGAATTCTCGCAATTACATGTGAC 60.164 40.000 9.11 0.00 35.04 3.67
3963 4040 2.768527 TCCTGAAGATCGCTGGAATTCT 59.231 45.455 5.23 0.00 31.49 2.40
3968 4045 1.107114 GTCTCCTGAAGATCGCTGGA 58.893 55.000 13.68 13.68 36.11 3.86
3972 4049 2.611225 AATGGTCTCCTGAAGATCGC 57.389 50.000 0.00 0.00 38.02 4.58
4017 4094 0.036952 CTGATATACCTGCTGCGGGG 60.037 60.000 29.83 19.32 33.40 5.73
4020 4097 0.039165 TCGCTGATATACCTGCTGCG 60.039 55.000 0.00 0.00 46.60 5.18
4038 4115 2.699846 AGAACCTGATCCTCTGCATCTC 59.300 50.000 0.00 0.00 0.00 2.75
4110 4187 7.428826 GTGAAGTTGAGATTCCAGATTTTGTT 58.571 34.615 0.00 0.00 0.00 2.83
4131 4208 2.604139 GGGGACATCAAAAAGGGTGAA 58.396 47.619 0.00 0.00 0.00 3.18
4134 4211 3.786495 GGGGGACATCAAAAAGGGT 57.214 52.632 0.00 0.00 0.00 4.34
4220 4297 5.363005 AGCCTTTCGGTGTATACTAACTCAT 59.637 40.000 4.17 0.00 0.00 2.90
4233 4310 1.274167 TGTACCACTAGCCTTTCGGTG 59.726 52.381 0.00 0.00 0.00 4.94
4236 4313 2.735134 GTTGTGTACCACTAGCCTTTCG 59.265 50.000 0.00 0.00 35.11 3.46
4243 4320 8.038944 AGTACCATTTATGTTGTGTACCACTAG 58.961 37.037 0.00 0.00 35.11 2.57
4244 4321 7.909518 AGTACCATTTATGTTGTGTACCACTA 58.090 34.615 0.00 0.00 35.11 2.74
4245 4322 6.775708 AGTACCATTTATGTTGTGTACCACT 58.224 36.000 0.00 0.00 35.11 4.00
4292 4856 8.533569 TGTGTACTTGACTAGATATTGATGGA 57.466 34.615 0.00 0.00 0.00 3.41
4314 4878 4.868450 TTTGTTACGGTTCAGTCTTGTG 57.132 40.909 0.00 0.00 0.00 3.33
4395 4959 6.852853 GTGTTATGCCATTCATGAATCGTAAG 59.147 38.462 18.16 6.83 36.63 2.34
4399 4963 5.172460 TGTGTTATGCCATTCATGAATCG 57.828 39.130 18.16 13.13 36.63 3.34
4410 4974 0.774276 TCCAGGGTTGTGTTATGCCA 59.226 50.000 0.00 0.00 0.00 4.92
4415 4979 0.111639 GGGCTTCCAGGGTTGTGTTA 59.888 55.000 0.00 0.00 0.00 2.41
4438 5002 5.649557 TCTGGATTGTGAATAATTTTGCCG 58.350 37.500 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.