AutoCloner

Multiple sequence alignment - TraesCS3D01G482000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G482000	chr3D	100.000	2405	0	0	664	3068	579598647	579601051	0.000000e+00	4442.0
1	TraesCS3D01G482000	chr3D	87.294	1519	163	20	976	2476	579614416	579615922	0.000000e+00	1709.0
2	TraesCS3D01G482000	chr3D	86.691	834	98	11	1469	2300	579658836	579659658	0.000000e+00	913.0
3	TraesCS3D01G482000	chr3D	100.000	321	0	0	1	321	579597984	579598304	7.320000e-166	593.0
4	TraesCS3D01G482000	chr3D	86.385	426	40	10	2538	2955	579659671	579660086	1.680000e-122	449.0
5	TraesCS3D01G482000	chr3D	70.383	574	154	15	1384	1947	89547531	89546964	1.500000e-18	104.0
6	TraesCS3D01G482000	chr3D	86.316	95	7	3	2941	3029	579661722	579661816	7.000000e-17	99.0
7	TraesCS3D01G482000	chr3D	74.522	314	37	16	2642	2954	579615962	579616233	2.520000e-16	97.1
8	TraesCS3D01G482000	chr3A	85.316	2370	226	61	669	2971	714727631	714729945	0.000000e+00	2337.0
9	TraesCS3D01G482000	chr3A	87.995	1741	169	15	1213	2926	714738513	714740240	0.000000e+00	2021.0
10	TraesCS3D01G482000	chr3A	89.033	1231	124	11	945	2170	714758173	714759397	0.000000e+00	1515.0
11	TraesCS3D01G482000	chr3A	85.252	834	108	12	1469	2300	714768994	714769814	0.000000e+00	845.0
12	TraesCS3D01G482000	chr3A	96.098	410	15	1	2618	3027	714740434	714740842	0.000000e+00	667.0
13	TraesCS3D01G482000	chr3A	88.087	277	29	4	945	1219	714737773	714738047	2.950000e-85	326.0
14	TraesCS3D01G482000	chr3A	84.918	305	30	8	2554	2851	714769866	714770161	8.320000e-76	294.0
15	TraesCS3D01G482000	chr3A	85.965	228	22	7	2478	2699	714761846	714762069	5.110000e-58	235.0
16	TraesCS3D01G482000	chr3A	88.079	151	12	4	2887	3031	714770157	714770307	1.130000e-39	174.0
17	TraesCS3D01G482000	chr3B	87.547	1855	168	38	668	2476	774057530	774059367	0.000000e+00	2087.0
18	TraesCS3D01G482000	chr3B	84.272	2130	218	50	855	2960	735131756	735129720	0.000000e+00	1969.0
19	TraesCS3D01G482000	chr3B	84.227	1883	212	41	955	2801	774125209	774127042	0.000000e+00	1753.0
20	TraesCS3D01G482000	chr3B	85.222	1509	190	20	987	2476	774153675	774155169	0.000000e+00	1520.0
21	TraesCS3D01G482000	chr3B	86.253	371	50	1	984	1354	774158953	774159322	4.760000e-108	401.0
22	TraesCS3D01G482000	chr3B	86.297	343	35	9	2688	3023	734993529	734993192	2.250000e-96	363.0
23	TraesCS3D01G482000	chr3B	85.139	323	30	6	1	321	774057132	774057438	6.390000e-82	315.0
24	TraesCS3D01G482000	chr3B	88.312	154	6	8	666	809	735131998	735131847	1.130000e-39	174.0
25	TraesCS3D01G482000	chr3B	74.018	331	43	17	2642	2971	774155209	774155497	9.060000e-16	95.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G482000	chr3D	579597984	579601051	3067	False	2517.500000	4442	100.000000	1	3068	2	chr3D.!!$F1	3067
1	TraesCS3D01G482000	chr3D	579614416	579616233	1817	False	903.050000	1709	80.908000	976	2954	2	chr3D.!!$F2	1978
2	TraesCS3D01G482000	chr3D	579658836	579661816	2980	False	487.000000	913	86.464000	1469	3029	3	chr3D.!!$F3	1560
3	TraesCS3D01G482000	chr3A	714727631	714729945	2314	False	2337.000000	2337	85.316000	669	2971	1	chr3A.!!$F1	2302
4	TraesCS3D01G482000	chr3A	714737773	714740842	3069	False	1004.666667	2021	90.726667	945	3027	3	chr3A.!!$F2	2082
5	TraesCS3D01G482000	chr3A	714758173	714762069	3896	False	875.000000	1515	87.499000	945	2699	2	chr3A.!!$F3	1754
6	TraesCS3D01G482000	chr3A	714768994	714770307	1313	False	437.666667	845	86.083000	1469	3031	3	chr3A.!!$F4	1562
7	TraesCS3D01G482000	chr3B	774125209	774127042	1833	False	1753.000000	1753	84.227000	955	2801	1	chr3B.!!$F1	1846
8	TraesCS3D01G482000	chr3B	774057132	774059367	2235	False	1201.000000	2087	86.343000	1	2476	2	chr3B.!!$F2	2475
9	TraesCS3D01G482000	chr3B	735129720	735131998	2278	True	1071.500000	1969	86.292000	666	2960	2	chr3B.!!$R2	2294
10	TraesCS3D01G482000	chr3B	774153675	774159322	5647	False	672.100000	1520	81.831000	984	2971	3	chr3B.!!$F3	1987

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
783	795	1.040339	TGTGGGTTTGGTGGTCTTGC	61.04	55.0	0.0	0.0	0.0	4.01	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2732	5644	0.79264	CAGTAGCCAGACAACTTGCG	59.207	55.0	0.0	0.0	39.36	4.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
54	55	7.757097	ACGAGCTAGTGTGAATAATAAAGTG	57.243	36.000	0.00	0.00	0.00	3.16
58	59	8.256611	AGCTAGTGTGAATAATAAAGTGTGTG	57.743	34.615	0.00	0.00	0.00	3.82
59	60	7.878127	AGCTAGTGTGAATAATAAAGTGTGTGT	59.122	33.333	0.00	0.00	0.00	3.72
88	89	6.609876	AGGGTGAATAATAATGTATGGTGCA	58.390	36.000	0.00	0.00	0.00	4.57
91	92	6.203915	GGTGAATAATAATGTATGGTGCACGA	59.796	38.462	11.45	7.55	0.00	4.35
101	102	6.986904	TGTATGGTGCACGAACATATTTTA	57.013	33.333	11.45	0.00	30.66	1.52
145	146	2.031495	ACTCCTAGGAAAGCACCACT	57.969	50.000	13.77	0.00	0.00	4.00
200	203	6.404844	CGAGAGAGAGTTTAGACAAAGGCATA	60.405	42.308	0.00	0.00	0.00	3.14
205	208	9.301897	AGAGAGTTTAGACAAAGGCATAAAAAT	57.698	29.630	0.00	0.00	0.00	1.82
206	209	9.914131	GAGAGTTTAGACAAAGGCATAAAAATT	57.086	29.630	0.00	0.00	0.00	1.82
207	210	9.696917	AGAGTTTAGACAAAGGCATAAAAATTG	57.303	29.630	0.00	0.00	0.00	2.32
208	211	8.831715	AGTTTAGACAAAGGCATAAAAATTGG	57.168	30.769	0.00	0.00	0.00	3.16
275	278	8.780846	AAACATAAAATAATTTCGAAACCCCC	57.219	30.769	13.81	0.00	0.00	5.40
746	757	2.877043	CAGCTTTTGTTCTTGCTGGT	57.123	45.000	5.98	0.00	46.24	4.00
783	795	1.040339	TGTGGGTTTGGTGGTCTTGC	61.040	55.000	0.00	0.00	0.00	4.01
810	836	2.290323	TGGGCTGTAGCTCTTTTTCTCC	60.290	50.000	5.22	0.00	43.37	3.71
913	987	1.661341	GTAGCACCTCCAGAGCAATG	58.339	55.000	0.00	0.00	0.00	2.82
922	996	1.211212	TCCAGAGCAATGACCCATCAG	59.789	52.381	0.00	0.00	38.57	2.90
923	997	1.211212	CCAGAGCAATGACCCATCAGA	59.789	52.381	0.00	0.00	38.57	3.27
924	998	2.158652	CCAGAGCAATGACCCATCAGAT	60.159	50.000	0.00	0.00	38.57	2.90
925	999	3.552875	CAGAGCAATGACCCATCAGATT	58.447	45.455	0.00	0.00	38.57	2.40
927	1001	2.621998	GAGCAATGACCCATCAGATTGG	59.378	50.000	0.00	0.00	38.57	3.16
928	1002	2.024655	AGCAATGACCCATCAGATTGGT	60.025	45.455	5.84	5.84	38.57	3.67
929	1003	3.202818	AGCAATGACCCATCAGATTGGTA	59.797	43.478	6.14	0.00	38.57	3.25
985	1067	3.922375	AGTTTTCAACTCCCCATTTCCA	58.078	40.909	0.00	0.00	37.02	3.53
1242	1796	5.979517	CCTTTTCCTTGTTCTTGATGACAAC	59.020	40.000	0.00	0.00	32.27	3.32
1247	1801	4.319046	CCTTGTTCTTGATGACAACGTCAG	60.319	45.833	2.95	0.00	46.04	3.51
1269	1823	4.389576	GCGGTGAAGGCGCAACAG	62.390	66.667	10.83	3.59	0.00	3.16
1276	1830	2.030805	GTGAAGGCGCAACAGAAATTCT	60.031	45.455	10.83	0.00	0.00	2.40
1324	1881	2.935238	GCTCCTTCGCTGGTATCAACAA	60.935	50.000	0.00	0.00	0.00	2.83
1325	1882	2.673368	CTCCTTCGCTGGTATCAACAAC	59.327	50.000	0.00	0.00	0.00	3.32
1326	1883	2.037902	TCCTTCGCTGGTATCAACAACA	59.962	45.455	0.00	0.00	0.00	3.33
1330	1887	3.845178	TCGCTGGTATCAACAACAGTAG	58.155	45.455	0.00	0.00	33.62	2.57
1473	2030	2.098607	CGACTACCGTGCAGAGGATTTA	59.901	50.000	14.49	0.00	0.00	1.40
1628	2209	2.282391	TGTGCTTGCTGCCCGATT	60.282	55.556	0.00	0.00	42.00	3.34
1877	2469	6.720112	AAGGCTATGCAAATACATCAACAT	57.280	33.333	0.00	0.00	0.00	2.71
2069	2661	2.527100	CATGTCGTCCCTCGTTTAGTC	58.473	52.381	0.00	0.00	40.80	2.59
2086	2678	9.462174	TCGTTTAGTCGTTATTGTTTCTTTAGA	57.538	29.630	0.00	0.00	0.00	2.10
2227	3148	6.387465	TGTCAGACTTCGTATCCTAACTTTG	58.613	40.000	1.31	0.00	0.00	2.77
2234	3160	5.531122	TCGTATCCTAACTTTGAGATGGG	57.469	43.478	0.00	0.00	0.00	4.00
2239	3165	5.165961	TCCTAACTTTGAGATGGGAAGTG	57.834	43.478	0.00	0.00	34.13	3.16
2266	3203	6.606234	TTATCGCACTGTCACTTTGTTTTA	57.394	33.333	0.00	0.00	0.00	1.52
2280	3217	7.115095	TCACTTTGTTTTAGTTTTGGTGTTTCG	59.885	33.333	0.00	0.00	0.00	3.46
2363	3317	5.698545	GCTCTGTAATTGGGTAGCTATCTTG	59.301	44.000	3.53	0.00	0.00	3.02
2369	3323	4.748277	TTGGGTAGCTATCTTGGTACAC	57.252	45.455	3.53	0.00	42.63	2.90
2399	3353	4.986179	TTCTTTCCAAAGAACATGGAGCGA	60.986	41.667	9.93	0.00	46.80	4.93
2418	3372	3.252400	CGATGCATCTCTGATTAGGAGC	58.748	50.000	23.73	0.00	0.00	4.70
2423	5273	1.418334	TCTCTGATTAGGAGCAGCCC	58.582	55.000	0.00	0.00	39.14	5.19
2424	5274	0.396060	CTCTGATTAGGAGCAGCCCC	59.604	60.000	0.00	0.00	39.14	5.80
2428	5278	1.135960	GATTAGGAGCAGCCCCTCTT	58.864	55.000	0.00	0.00	37.37	2.85
2480	5352	9.784680	CTATTCTGAAATTATTATCATGCTGCC	57.215	33.333	0.00	0.00	0.00	4.85
2481	5353	6.579666	TCTGAAATTATTATCATGCTGCCC	57.420	37.500	0.00	0.00	0.00	5.36
2482	5354	5.477984	TCTGAAATTATTATCATGCTGCCCC	59.522	40.000	0.00	0.00	0.00	5.80
2483	5355	4.527816	TGAAATTATTATCATGCTGCCCCC	59.472	41.667	0.00	0.00	0.00	5.40
2623	5519	9.573166	AATTTATACTAATGGCATGCAGAACTA	57.427	29.630	21.36	1.39	0.00	2.24
2624	5520	9.745018	ATTTATACTAATGGCATGCAGAACTAT	57.255	29.630	21.36	8.81	0.00	2.12
2651	5552	6.194796	TGCTTATTTTGGTCTCTGTTATGC	57.805	37.500	0.00	0.00	0.00	3.14
2672	5573	3.125316	GCTAGTTCGTTGCTATGTGCTTT	59.875	43.478	0.00	0.00	43.37	3.51
2740	5652	3.181540	CGTTGACTGATACTCGCAAGTTG	60.182	47.826	0.00	0.00	36.92	3.16
2752	5668	1.873903	CGCAAGTTGTCTGGCTACTGT	60.874	52.381	4.48	0.00	38.41	3.55
2753	5669	2.222027	GCAAGTTGTCTGGCTACTGTT	58.778	47.619	4.48	0.00	37.62	3.16
2754	5670	2.618709	GCAAGTTGTCTGGCTACTGTTT	59.381	45.455	4.48	0.00	37.62	2.83
2755	5671	3.066760	GCAAGTTGTCTGGCTACTGTTTT	59.933	43.478	4.48	0.00	37.62	2.43
2811	5728	2.444421	CAAATCAGGGAAAGAGCTGCT	58.556	47.619	0.00	0.00	0.00	4.24
2817	5748	1.705186	AGGGAAAGAGCTGCTGGTTTA	59.295	47.619	7.01	0.00	0.00	2.01
2850	5781	3.058432	CAGACCTTGACTCAAATGCACTG	60.058	47.826	0.00	0.00	0.00	3.66
2877	5808	3.503748	GCTTCCAGTTACTCATGCACTTT	59.496	43.478	0.00	0.00	0.00	2.66
2901	5832	0.039618	TTTGATCTGGAACTGGGGGC	59.960	55.000	0.00	0.00	0.00	5.80
2913	6345	0.109342	CTGGGGGCGCAGATCTAAAT	59.891	55.000	10.83	0.00	0.00	1.40
3052	8150	9.685005	CGGAACTCTTATTGTTTAAGTTAATCG	57.315	33.333	0.00	0.00	30.68	3.34

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
17	18	7.541091	TCACACTAGCTCGTTATACTTTTCTTG	59.459	37.037	0.00	0.00	0.00	3.02
20	21	7.807687	TTCACACTAGCTCGTTATACTTTTC	57.192	36.000	0.00	0.00	0.00	2.29
31	32	7.275779	ACACACTTTATTATTCACACTAGCTCG	59.724	37.037	0.00	0.00	0.00	5.03
50	51	7.648039	TTATTCACCCTAAAAACACACACTT	57.352	32.000	0.00	0.00	0.00	3.16
78	79	5.888691	AAAATATGTTCGTGCACCATACA	57.111	34.783	12.15	13.02	0.00	2.29
84	85	9.549509	TCACTTTTATAAAATATGTTCGTGCAC	57.450	29.630	10.97	6.82	0.00	4.57
114	115	8.325787	TGCTTTCCTAGGAGTATTTTCATACAA	58.674	33.333	12.26	0.00	38.24	2.41
125	126	3.097614	GAGTGGTGCTTTCCTAGGAGTA	58.902	50.000	12.26	3.54	0.00	2.59
145	146	5.997129	TGAGAACATTGCATCTTACACAAGA	59.003	36.000	0.00	0.00	44.77	3.02
183	184	7.877612	CCCAATTTTTATGCCTTTGTCTAAACT	59.122	33.333	0.00	0.00	0.00	2.66
184	185	7.875554	TCCCAATTTTTATGCCTTTGTCTAAAC	59.124	33.333	0.00	0.00	0.00	2.01
186	187	7.546250	TCCCAATTTTTATGCCTTTGTCTAA	57.454	32.000	0.00	0.00	0.00	2.10
272	275	8.457238	TTTTCATAGTTTTTCATTTTTGGGGG	57.543	30.769	0.00	0.00	0.00	5.40
273	276	9.119418	ACTTTTCATAGTTTTTCATTTTTGGGG	57.881	29.630	0.00	0.00	0.00	4.96
710	721	8.424133	ACAAAAGCTGGAACTTATCTGATTTTT	58.576	29.630	0.00	0.00	32.38	1.94
746	757	3.055675	CCACAGTTCCTATTTGTACCGGA	60.056	47.826	9.46	0.00	0.00	5.14
783	795	3.618690	AAGAGCTACAGCCCAAAGTAG	57.381	47.619	0.00	0.00	43.38	2.57
810	836	4.151335	CAGTGGTGATTTTTCGAGAGAGTG	59.849	45.833	0.00	0.00	43.69	3.51
838	892	5.051153	GGATGGAGAACGAAATAAGGAGAC	58.949	45.833	0.00	0.00	0.00	3.36
913	987	1.541233	CCGCTACCAATCTGATGGGTC	60.541	57.143	19.94	6.42	45.18	4.46
922	996	1.404843	ACTCTCCTCCGCTACCAATC	58.595	55.000	0.00	0.00	0.00	2.67
923	997	1.867363	AACTCTCCTCCGCTACCAAT	58.133	50.000	0.00	0.00	0.00	3.16
924	998	1.640917	AAACTCTCCTCCGCTACCAA	58.359	50.000	0.00	0.00	0.00	3.67
925	999	1.640917	AAAACTCTCCTCCGCTACCA	58.359	50.000	0.00	0.00	0.00	3.25
927	1001	2.619147	GGAAAAACTCTCCTCCGCTAC	58.381	52.381	0.00	0.00	0.00	3.58
928	1002	1.203994	CGGAAAAACTCTCCTCCGCTA	59.796	52.381	0.00	0.00	43.83	4.26
929	1003	0.037232	CGGAAAAACTCTCCTCCGCT	60.037	55.000	0.00	0.00	43.83	5.52
985	1067	2.577700	CGACATGGTAGAGCTACTCCT	58.422	52.381	7.51	0.00	36.36	3.69
1269	1823	4.082787	TCCTCATCCGCAAAACAGAATTTC	60.083	41.667	0.00	0.00	0.00	2.17
1276	1830	1.265635	CGTTTCCTCATCCGCAAAACA	59.734	47.619	0.00	0.00	31.72	2.83
1324	1881	4.399219	TGAGAAGTGTAGCTGTCTACTGT	58.601	43.478	0.00	0.00	44.26	3.55
1325	1882	4.674101	GCTGAGAAGTGTAGCTGTCTACTG	60.674	50.000	0.00	0.00	44.26	2.74
1326	1883	3.442273	GCTGAGAAGTGTAGCTGTCTACT	59.558	47.826	0.00	0.00	44.26	2.57
1330	1887	2.605030	CTGCTGAGAAGTGTAGCTGTC	58.395	52.381	0.00	0.00	38.25	3.51
1437	1994	0.802222	AGTCGCCGATGACAACGATG	60.802	55.000	6.69	0.00	41.41	3.84
1473	2030	0.323908	CTGGAGGAGTCTCTTCGGGT	60.324	60.000	5.93	0.00	39.86	5.28
1628	2209	2.031012	CCGCACTGAAGACTGGCA	59.969	61.111	0.00	0.00	0.00	4.92
1877	2469	1.479323	GGATGGTCGTTACTGTGCCTA	59.521	52.381	0.00	0.00	0.00	3.93
1920	2512	1.197036	GCCTTCTTTAAGCCGTCACAC	59.803	52.381	0.00	0.00	0.00	3.82
2086	2678	9.990868	ACTTCAAACCCTGGAACTATATAATTT	57.009	29.630	0.00	0.00	0.00	1.82
2111	2703	7.572539	GCACCATTACTAGTACAAGAAAACCAC	60.573	40.741	0.91	0.00	0.00	4.16
2204	3121	6.618811	TCAAAGTTAGGATACGAAGTCTGAC	58.381	40.000	0.00	0.00	43.93	3.51
2227	3148	4.246458	GCGATAATACCACTTCCCATCTC	58.754	47.826	0.00	0.00	0.00	2.75
2234	3160	4.267928	GTGACAGTGCGATAATACCACTTC	59.732	45.833	0.00	0.00	37.70	3.01
2239	3165	4.630069	ACAAAGTGACAGTGCGATAATACC	59.370	41.667	0.00	0.00	0.00	2.73
2266	3203	3.791973	TGCATTCGAAACACCAAAACT	57.208	38.095	0.00	0.00	0.00	2.66
2308	3246	8.954950	AATTCATGAACCTGATAGTACTTCTG	57.045	34.615	11.07	3.17	0.00	3.02
2309	3247	8.986991	AGAATTCATGAACCTGATAGTACTTCT	58.013	33.333	11.07	8.32	0.00	2.85
2363	3317	3.135994	TGGAAAGAAGCTTTCGTGTACC	58.864	45.455	0.00	0.00	34.02	3.34
2399	3353	3.557475	GCTGCTCCTAATCAGAGATGCAT	60.557	47.826	0.00	0.00	33.90	3.96
2418	3372	4.606071	CTCGTGAAAGAGGGGCTG	57.394	61.111	0.00	0.00	34.74	4.85
2424	5274	3.303395	GCAAACAACTCCTCGTGAAAGAG	60.303	47.826	0.00	0.00	37.97	2.85
2428	5278	1.305201	GGCAAACAACTCCTCGTGAA	58.695	50.000	0.00	0.00	0.00	3.18
2480	5352	3.832527	CAAACATGGGAATAGTAGGGGG	58.167	50.000	0.00	0.00	0.00	5.40
2481	5353	3.222603	GCAAACATGGGAATAGTAGGGG	58.777	50.000	0.00	0.00	0.00	4.79
2482	5354	3.897239	TGCAAACATGGGAATAGTAGGG	58.103	45.455	0.00	0.00	0.00	3.53
2483	5355	6.469782	AATTGCAAACATGGGAATAGTAGG	57.530	37.500	1.71	0.00	0.00	3.18
2486	5358	9.165035	CAAAATAATTGCAAACATGGGAATAGT	57.835	29.630	1.71	0.00	0.00	2.12
2487	5359	9.381033	TCAAAATAATTGCAAACATGGGAATAG	57.619	29.630	1.71	0.00	0.00	1.73
2488	5360	9.730705	TTCAAAATAATTGCAAACATGGGAATA	57.269	25.926	1.71	0.00	0.00	1.75
2489	5361	8.632906	TTCAAAATAATTGCAAACATGGGAAT	57.367	26.923	1.71	0.00	0.00	3.01
2490	5362	8.632906	ATTCAAAATAATTGCAAACATGGGAA	57.367	26.923	1.71	3.30	0.00	3.97
2491	5363	8.632906	AATTCAAAATAATTGCAAACATGGGA	57.367	26.923	1.71	0.00	0.00	4.37
2492	5364	8.512956	TGAATTCAAAATAATTGCAAACATGGG	58.487	29.630	5.45	0.00	0.00	4.00
2576	5471	8.766994	AAATTTACTAATATGCCAGGACACAT	57.233	30.769	0.00	0.00	0.00	3.21
2604	5500	7.281774	GCATATATAGTTCTGCATGCCATTAGT	59.718	37.037	16.68	3.64	34.18	2.24
2625	5521	8.571336	GCATAACAGAGACCAAAATAAGCATAT	58.429	33.333	0.00	0.00	0.00	1.78
2626	5522	7.775093	AGCATAACAGAGACCAAAATAAGCATA	59.225	33.333	0.00	0.00	0.00	3.14
2711	5614	4.729746	GCGAGTATCAGTCAACGTACATGA	60.730	45.833	0.00	0.00	33.17	3.07
2732	5644	0.792640	CAGTAGCCAGACAACTTGCG	59.207	55.000	0.00	0.00	39.36	4.85
2768	5685	3.635373	CAGTAGGCATCCAAAGCATTCAT	59.365	43.478	0.00	0.00	0.00	2.57
2811	5728	8.602424	TCAAGGTCTGAGATTTATTCTAAACCA	58.398	33.333	0.00	0.00	34.81	3.67
2817	5748	7.487822	TGAGTCAAGGTCTGAGATTTATTCT	57.512	36.000	0.00	0.00	37.41	2.40
2850	5781	3.265791	CATGAGTAACTGGAAGCACCTC	58.734	50.000	0.00	0.00	37.60	3.85
2857	5788	3.820467	CCAAAGTGCATGAGTAACTGGAA	59.180	43.478	0.00	0.00	0.00	3.53
2877	5808	1.522668	CAGTTCCAGATCAAACGCCA	58.477	50.000	0.00	0.00	0.00	5.69
2901	5832	6.021939	CGCAAGAAAGAAAATTTAGATCTGCG	60.022	38.462	5.18	2.91	43.02	5.18
2913	6345	4.699637	TCTACAGGACGCAAGAAAGAAAA	58.300	39.130	0.00	0.00	43.62	2.29

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.