Multiple sequence alignment - TraesCS3D01G481700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G481700 chr3D 100.000 3056 0 0 1 3056 579584227 579587282 0.000000e+00 5644.0
1 TraesCS3D01G481700 chr3D 91.090 1459 128 2 995 2452 579423948 579422491 0.000000e+00 1973.0
2 TraesCS3D01G481700 chr3D 91.898 1407 110 4 995 2398 579396258 579394853 0.000000e+00 1964.0
3 TraesCS3D01G481700 chr3D 97.770 269 6 0 1 269 579425310 579425042 5.970000e-127 464.0
4 TraesCS3D01G481700 chr3D 92.000 175 14 0 2881 3055 579394576 579394402 2.350000e-61 246.0
5 TraesCS3D01G481700 chr3D 82.418 273 24 14 2633 2884 422528787 422529056 1.850000e-52 217.0
6 TraesCS3D01G481700 chr3D 80.451 266 28 12 2640 2884 590409732 590409470 6.730000e-42 182.0
7 TraesCS3D01G481700 chr3D 80.597 134 10 5 2472 2605 579422389 579422272 4.200000e-14 89.8
8 TraesCS3D01G481700 chr3D 79.104 134 11 6 2472 2605 579394725 579394609 3.270000e-10 76.8
9 TraesCS3D01G481700 chr3B 90.492 2482 177 18 1 2452 773762172 773759720 0.000000e+00 3221.0
10 TraesCS3D01G481700 chr3B 91.000 1800 97 29 537 2308 773898093 773899855 0.000000e+00 2366.0
11 TraesCS3D01G481700 chr3B 95.281 445 21 0 1 445 773897654 773898098 0.000000e+00 706.0
12 TraesCS3D01G481700 chr3B 96.654 269 9 0 1 269 773745805 773745537 6.010000e-122 448.0
13 TraesCS3D01G481700 chr3B 92.045 176 10 2 2881 3055 773900182 773900354 8.460000e-61 244.0
14 TraesCS3D01G481700 chr3B 95.395 152 7 0 2301 2452 773899882 773900033 3.040000e-60 243.0
15 TraesCS3D01G481700 chr3B 89.714 175 18 0 2881 3055 773759468 773759294 1.100000e-54 224.0
16 TraesCS3D01G481700 chr3B 100.000 31 0 0 2472 2502 773900068 773900098 1.180000e-04 58.4
17 TraesCS3D01G481700 chr3A 92.816 1545 87 10 779 2310 714643381 714644914 0.000000e+00 2217.0
18 TraesCS3D01G481700 chr3A 91.872 1464 114 5 995 2453 714591755 714590292 0.000000e+00 2039.0
19 TraesCS3D01G481700 chr3A 85.217 805 60 22 2292 3056 714644930 714645715 0.000000e+00 773.0
20 TraesCS3D01G481700 chr3A 90.290 587 56 1 1858 2443 714627775 714628361 0.000000e+00 767.0
21 TraesCS3D01G481700 chr3A 97.378 267 7 0 1 267 714603317 714603051 3.590000e-124 455.0
22 TraesCS3D01G481700 chr3A 95.911 269 11 0 1 269 714625590 714625858 1.300000e-118 436.0
23 TraesCS3D01G481700 chr3A 94.424 269 15 0 1 269 714593951 714593683 6.100000e-112 414.0
24 TraesCS3D01G481700 chr3A 93.714 175 11 0 2881 3055 714590052 714589878 2.340000e-66 263.0
25 TraesCS3D01G481700 chr3A 82.642 265 24 13 2633 2877 566874641 566874379 6.640000e-52 215.0
26 TraesCS3D01G481700 chr3A 97.260 73 1 1 665 737 714643148 714643219 4.140000e-24 122.0
27 TraesCS3D01G481700 chr4A 83.969 262 23 12 2643 2887 47750939 47751198 1.830000e-57 233.0
28 TraesCS3D01G481700 chr4A 80.769 260 31 6 2643 2884 605143245 605142987 5.200000e-43 185.0
29 TraesCS3D01G481700 chr2B 83.846 260 21 10 2643 2884 225571375 225571631 8.520000e-56 228.0
30 TraesCS3D01G481700 chr2B 88.636 176 9 2 447 612 411541456 411541282 1.440000e-48 204.0
31 TraesCS3D01G481700 chr2B 89.404 151 13 3 436 586 133025577 133025430 1.450000e-43 187.0
32 TraesCS3D01G481700 chr2B 79.087 263 31 15 2643 2884 620624231 620623972 3.150000e-35 159.0
33 TraesCS3D01G481700 chr2B 90.526 95 9 0 2643 2737 106941230 106941324 3.200000e-25 126.0
34 TraesCS3D01G481700 chr7D 89.560 182 8 6 447 618 263946172 263946352 1.430000e-53 220.0
35 TraesCS3D01G481700 chr7D 89.855 69 5 2 429 497 137560870 137560936 1.510000e-13 87.9
36 TraesCS3D01G481700 chr2D 88.525 183 17 3 436 617 458156094 458156273 5.130000e-53 219.0
37 TraesCS3D01G481700 chr4D 82.772 267 22 12 2643 2887 416060963 416060699 1.850000e-52 217.0
38 TraesCS3D01G481700 chr4D 89.437 142 11 4 446 586 478248013 478247875 3.130000e-40 176.0
39 TraesCS3D01G481700 chr5B 82.397 267 19 10 2643 2884 316713424 316713161 1.110000e-49 207.0
40 TraesCS3D01G481700 chr7A 80.443 271 31 10 2635 2884 163129200 163128931 1.450000e-43 187.0
41 TraesCS3D01G481700 chr1B 80.392 255 43 7 2635 2884 685647054 685646802 1.450000e-43 187.0
42 TraesCS3D01G481700 chr2A 88.816 152 14 3 435 586 601706804 601706952 1.870000e-42 183.0
43 TraesCS3D01G481700 chr2A 85.405 185 16 4 438 612 457912620 457912803 6.730000e-42 182.0
44 TraesCS3D01G481700 chr2A 86.755 151 18 2 2734 2884 726429816 726429964 1.880000e-37 167.0
45 TraesCS3D01G481700 chrUn 80.545 257 31 6 2643 2881 451281487 451281232 2.420000e-41 180.0
46 TraesCS3D01G481700 chr7B 88.742 151 12 4 436 586 323200938 323200793 2.420000e-41 180.0
47 TraesCS3D01G481700 chr4B 85.897 156 17 5 2734 2887 512757927 512757775 8.770000e-36 161.0
48 TraesCS3D01G481700 chr6B 92.857 70 4 1 429 497 274211494 274211563 1.940000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G481700 chr3D 579584227 579587282 3055 False 5644.000000 5644 100.000000 1 3056 1 chr3D.!!$F2 3055
1 TraesCS3D01G481700 chr3D 579422272 579425310 3038 True 842.266667 1973 89.819000 1 2605 3 chr3D.!!$R3 2604
2 TraesCS3D01G481700 chr3D 579394402 579396258 1856 True 762.266667 1964 87.667333 995 3055 3 chr3D.!!$R2 2060
3 TraesCS3D01G481700 chr3B 773759294 773762172 2878 True 1722.500000 3221 90.103000 1 3055 2 chr3B.!!$R2 3054
4 TraesCS3D01G481700 chr3B 773897654 773900354 2700 False 723.480000 2366 94.744200 1 3055 5 chr3B.!!$F1 3054
5 TraesCS3D01G481700 chr3A 714643148 714645715 2567 False 1037.333333 2217 91.764333 665 3056 3 chr3A.!!$F2 2391
6 TraesCS3D01G481700 chr3A 714589878 714593951 4073 True 905.333333 2039 93.336667 1 3055 3 chr3A.!!$R3 3054
7 TraesCS3D01G481700 chr3A 714625590 714628361 2771 False 601.500000 767 93.100500 1 2443 2 chr3A.!!$F1 2442

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
504 689 1.01891 TCGTGACAAGTCGACACTGA 58.981 50.0 19.5 6.03 38.03 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2209 3963 0.62041 ATCAGATCCCCGGTCCACAA 60.62 55.0 0.0 0.0 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 123 1.396996 GTCATGTACCGTGGTGCAATC 59.603 52.381 13.82 4.30 43.34 2.67
284 327 3.002759 GCTCTGTGTTTCTTTCTGTGGTC 59.997 47.826 0.00 0.00 0.00 4.02
314 391 7.384439 TGAGCCAAACATCGTTAATCAAATA 57.616 32.000 0.00 0.00 0.00 1.40
367 444 6.543831 ACTTCATTTATGCATTAGGGTCAGTC 59.456 38.462 3.54 0.00 0.00 3.51
445 630 5.566469 TGGGTGAAGTAATCAAGGTTTAGG 58.434 41.667 0.00 0.00 40.50 2.69
446 631 5.311121 TGGGTGAAGTAATCAAGGTTTAGGA 59.689 40.000 0.00 0.00 40.50 2.94
448 633 6.473758 GGTGAAGTAATCAAGGTTTAGGAGT 58.526 40.000 0.00 0.00 40.50 3.85
449 634 6.594547 GGTGAAGTAATCAAGGTTTAGGAGTC 59.405 42.308 0.00 0.00 40.50 3.36
450 635 6.310711 GTGAAGTAATCAAGGTTTAGGAGTCG 59.689 42.308 0.00 0.00 40.50 4.18
451 636 6.209986 TGAAGTAATCAAGGTTTAGGAGTCGA 59.790 38.462 0.00 0.00 34.30 4.20
452 637 5.963594 AGTAATCAAGGTTTAGGAGTCGAC 58.036 41.667 7.70 7.70 0.00 4.20
453 638 3.505464 ATCAAGGTTTAGGAGTCGACG 57.495 47.619 10.46 0.00 0.00 5.12
454 639 2.507484 TCAAGGTTTAGGAGTCGACGA 58.493 47.619 10.46 0.00 0.00 4.20
455 640 2.486982 TCAAGGTTTAGGAGTCGACGAG 59.513 50.000 10.46 0.00 0.00 4.18
456 641 2.197283 AGGTTTAGGAGTCGACGAGT 57.803 50.000 10.46 4.51 0.00 4.18
457 642 2.083002 AGGTTTAGGAGTCGACGAGTC 58.917 52.381 21.91 21.91 0.00 3.36
470 655 3.394800 CGAGTCGTTCGGATGTTGA 57.605 52.632 3.82 0.00 45.54 3.18
471 656 1.260206 CGAGTCGTTCGGATGTTGAG 58.740 55.000 3.82 0.00 45.54 3.02
472 657 1.135774 CGAGTCGTTCGGATGTTGAGA 60.136 52.381 3.82 0.00 45.54 3.27
473 658 2.251893 GAGTCGTTCGGATGTTGAGAC 58.748 52.381 0.00 0.00 0.00 3.36
474 659 1.887198 AGTCGTTCGGATGTTGAGACT 59.113 47.619 0.00 0.00 33.27 3.24
475 660 2.095161 AGTCGTTCGGATGTTGAGACTC 60.095 50.000 0.00 0.00 32.77 3.36
476 661 1.883926 TCGTTCGGATGTTGAGACTCA 59.116 47.619 0.00 0.00 0.00 3.41
477 662 2.492088 TCGTTCGGATGTTGAGACTCAT 59.508 45.455 5.87 0.00 0.00 2.90
478 663 3.692593 TCGTTCGGATGTTGAGACTCATA 59.307 43.478 5.87 0.00 0.00 2.15
479 664 4.038361 CGTTCGGATGTTGAGACTCATAG 58.962 47.826 5.87 0.00 0.00 2.23
480 665 4.201920 CGTTCGGATGTTGAGACTCATAGA 60.202 45.833 5.87 0.00 0.00 1.98
481 666 4.902443 TCGGATGTTGAGACTCATAGAC 57.098 45.455 5.87 2.32 0.00 2.59
482 667 4.527944 TCGGATGTTGAGACTCATAGACT 58.472 43.478 5.87 0.00 0.00 3.24
483 668 5.681639 TCGGATGTTGAGACTCATAGACTA 58.318 41.667 5.87 0.00 0.00 2.59
484 669 6.120220 TCGGATGTTGAGACTCATAGACTAA 58.880 40.000 5.87 0.00 0.00 2.24
485 670 6.773200 TCGGATGTTGAGACTCATAGACTAAT 59.227 38.462 5.87 0.00 0.00 1.73
486 671 7.041030 TCGGATGTTGAGACTCATAGACTAATC 60.041 40.741 5.87 2.46 0.00 1.75
487 672 7.081349 GGATGTTGAGACTCATAGACTAATCG 58.919 42.308 5.87 0.00 0.00 3.34
488 673 7.255312 GGATGTTGAGACTCATAGACTAATCGT 60.255 40.741 5.87 0.00 0.00 3.73
489 674 6.786207 TGTTGAGACTCATAGACTAATCGTG 58.214 40.000 5.87 0.00 0.00 4.35
490 675 6.598064 TGTTGAGACTCATAGACTAATCGTGA 59.402 38.462 5.87 0.00 0.00 4.35
491 676 6.606234 TGAGACTCATAGACTAATCGTGAC 57.394 41.667 0.00 0.00 0.00 3.67
492 677 6.113411 TGAGACTCATAGACTAATCGTGACA 58.887 40.000 0.00 0.00 0.00 3.58
493 678 6.598064 TGAGACTCATAGACTAATCGTGACAA 59.402 38.462 0.00 0.00 0.00 3.18
494 679 7.022055 AGACTCATAGACTAATCGTGACAAG 57.978 40.000 0.00 0.00 0.00 3.16
495 680 6.600032 AGACTCATAGACTAATCGTGACAAGT 59.400 38.462 0.00 0.00 0.00 3.16
496 681 6.787225 ACTCATAGACTAATCGTGACAAGTC 58.213 40.000 5.66 5.66 38.90 3.01
497 682 5.807344 TCATAGACTAATCGTGACAAGTCG 58.193 41.667 7.43 0.00 42.51 4.18
498 683 5.583457 TCATAGACTAATCGTGACAAGTCGA 59.417 40.000 7.43 0.00 42.51 4.20
499 684 4.080969 AGACTAATCGTGACAAGTCGAC 57.919 45.455 7.70 7.70 42.51 4.20
500 685 3.501062 AGACTAATCGTGACAAGTCGACA 59.499 43.478 19.50 0.00 42.51 4.35
501 686 3.562505 ACTAATCGTGACAAGTCGACAC 58.437 45.455 19.50 5.65 38.85 3.67
502 687 2.795175 AATCGTGACAAGTCGACACT 57.205 45.000 19.50 0.63 38.03 3.55
503 688 2.051879 ATCGTGACAAGTCGACACTG 57.948 50.000 19.50 16.43 38.03 3.66
504 689 1.018910 TCGTGACAAGTCGACACTGA 58.981 50.000 19.50 6.03 38.03 3.41
505 690 1.402613 TCGTGACAAGTCGACACTGAA 59.597 47.619 19.50 6.10 38.03 3.02
506 691 1.781429 CGTGACAAGTCGACACTGAAG 59.219 52.381 19.50 3.01 38.03 3.02
507 692 2.794981 CGTGACAAGTCGACACTGAAGT 60.795 50.000 19.50 6.31 38.03 3.01
508 693 3.187700 GTGACAAGTCGACACTGAAGTT 58.812 45.455 19.50 0.00 37.32 2.66
509 694 3.000322 GTGACAAGTCGACACTGAAGTTG 60.000 47.826 19.50 13.50 37.32 3.16
510 695 3.187700 GACAAGTCGACACTGAAGTTGT 58.812 45.455 19.50 16.64 32.71 3.32
511 696 2.930040 ACAAGTCGACACTGAAGTTGTG 59.070 45.455 19.50 2.39 40.87 3.33
512 697 3.186909 CAAGTCGACACTGAAGTTGTGA 58.813 45.455 19.50 0.00 38.65 3.58
513 698 2.810650 AGTCGACACTGAAGTTGTGAC 58.189 47.619 19.50 0.00 38.65 3.67
514 699 2.427453 AGTCGACACTGAAGTTGTGACT 59.573 45.455 19.50 3.58 38.65 3.41
515 700 2.789893 GTCGACACTGAAGTTGTGACTC 59.210 50.000 11.55 0.00 38.65 3.36
516 701 2.425668 TCGACACTGAAGTTGTGACTCA 59.574 45.455 0.65 0.00 38.65 3.41
517 702 3.068165 TCGACACTGAAGTTGTGACTCAT 59.932 43.478 0.65 0.00 38.65 2.90
518 703 4.277423 TCGACACTGAAGTTGTGACTCATA 59.723 41.667 0.65 0.00 38.65 2.15
519 704 4.618912 CGACACTGAAGTTGTGACTCATAG 59.381 45.833 0.65 0.00 38.65 2.23
520 705 5.562890 CGACACTGAAGTTGTGACTCATAGA 60.563 44.000 0.65 0.00 38.65 1.98
521 706 5.533482 ACACTGAAGTTGTGACTCATAGAC 58.467 41.667 0.65 0.00 38.65 2.59
522 707 5.303078 ACACTGAAGTTGTGACTCATAGACT 59.697 40.000 0.65 0.00 38.65 3.24
523 708 6.490381 ACACTGAAGTTGTGACTCATAGACTA 59.510 38.462 0.65 0.00 38.65 2.59
524 709 7.026562 CACTGAAGTTGTGACTCATAGACTAG 58.973 42.308 0.00 0.00 37.60 2.57
525 710 6.717540 ACTGAAGTTGTGACTCATAGACTAGT 59.282 38.462 0.00 0.00 34.21 2.57
526 711 7.094549 ACTGAAGTTGTGACTCATAGACTAGTC 60.095 40.741 15.41 15.41 42.04 2.59
527 712 5.804692 AGTTGTGACTCATAGACTAGTCG 57.195 43.478 17.07 5.27 44.14 4.18
528 713 5.489249 AGTTGTGACTCATAGACTAGTCGA 58.511 41.667 17.07 12.76 44.14 4.20
529 714 5.352016 AGTTGTGACTCATAGACTAGTCGAC 59.648 44.000 17.07 7.70 44.14 4.20
530 715 4.828829 TGTGACTCATAGACTAGTCGACA 58.171 43.478 19.50 7.23 44.14 4.35
531 716 4.630505 TGTGACTCATAGACTAGTCGACAC 59.369 45.833 19.50 16.99 44.14 3.67
532 717 4.871557 GTGACTCATAGACTAGTCGACACT 59.128 45.833 19.50 13.07 44.14 3.55
533 718 4.870991 TGACTCATAGACTAGTCGACACTG 59.129 45.833 19.50 9.49 44.14 3.66
534 719 5.087391 ACTCATAGACTAGTCGACACTGA 57.913 43.478 19.50 11.47 33.62 3.41
535 720 5.489249 ACTCATAGACTAGTCGACACTGAA 58.511 41.667 19.50 0.00 33.62 3.02
536 721 5.583061 ACTCATAGACTAGTCGACACTGAAG 59.417 44.000 19.50 9.06 33.62 3.02
537 722 5.489249 TCATAGACTAGTCGACACTGAAGT 58.511 41.667 19.50 12.14 33.62 3.01
538 723 5.351740 TCATAGACTAGTCGACACTGAAGTG 59.648 44.000 19.50 8.91 42.19 3.16
609 794 3.930336 TGACTAGTCCTTCGACTCGTAA 58.070 45.455 20.11 0.00 46.90 3.18
784 2509 9.113838 GTGATGTATTAGAATCCAATGTTGAGT 57.886 33.333 0.00 0.00 0.00 3.41
794 2519 8.321353 AGAATCCAATGTTGAGTCACATAGTAA 58.679 33.333 0.00 0.00 36.30 2.24
833 2558 1.605712 CCCTCCGTTCACACTTCACTC 60.606 57.143 0.00 0.00 0.00 3.51
834 2559 1.341531 CCTCCGTTCACACTTCACTCT 59.658 52.381 0.00 0.00 0.00 3.24
835 2560 2.557056 CCTCCGTTCACACTTCACTCTA 59.443 50.000 0.00 0.00 0.00 2.43
836 2561 3.005472 CCTCCGTTCACACTTCACTCTAA 59.995 47.826 0.00 0.00 0.00 2.10
837 2562 4.500887 CCTCCGTTCACACTTCACTCTAAA 60.501 45.833 0.00 0.00 0.00 1.85
838 2563 5.209818 TCCGTTCACACTTCACTCTAAAT 57.790 39.130 0.00 0.00 0.00 1.40
839 2564 5.607477 TCCGTTCACACTTCACTCTAAATT 58.393 37.500 0.00 0.00 0.00 1.82
840 2565 6.053005 TCCGTTCACACTTCACTCTAAATTT 58.947 36.000 0.00 0.00 0.00 1.82
901 2650 3.314080 TCAACTGCAAGGTTAGTTTTCGG 59.686 43.478 0.00 0.00 39.30 4.30
969 2720 1.397672 TCTCTGCTCCTGATTCCTCG 58.602 55.000 0.00 0.00 0.00 4.63
980 2731 4.082190 TCCTGATTCCTCGTCACTTGTTAG 60.082 45.833 0.00 0.00 0.00 2.34
1007 2758 0.630673 AAGGGGGTAAGCATGCATCA 59.369 50.000 21.98 0.47 0.00 3.07
1028 2779 0.390472 CCTTCTCTCCACTTGGTCGC 60.390 60.000 0.00 0.00 36.34 5.19
1189 2940 5.221702 ACCCCCTCAAATTCAACTGAAAATG 60.222 40.000 0.00 0.00 37.61 2.32
1423 3174 8.267620 TGGAAATCTTGTAGTCCTATCATCAT 57.732 34.615 0.00 0.00 0.00 2.45
1429 3180 7.455891 TCTTGTAGTCCTATCATCATACGGTA 58.544 38.462 0.00 0.00 0.00 4.02
1475 3226 1.594293 CAAGCGACACCGTCCTTGT 60.594 57.895 13.02 0.00 36.76 3.16
1596 3347 0.987294 ATGACCTTGACACTCCCCTG 59.013 55.000 0.00 0.00 0.00 4.45
1908 3662 1.559219 TGTGGTGCATATGGCTACTGT 59.441 47.619 4.56 0.00 45.15 3.55
1927 3681 3.715628 GTGACAACACAGAGGCAATTT 57.284 42.857 0.00 0.00 45.32 1.82
2054 3808 3.054361 GGAGAGGCCAATTTCTTGACCTA 60.054 47.826 5.01 0.00 44.40 3.08
2089 3843 2.755650 CTCCAGACAAGTTTGTACGCT 58.244 47.619 0.00 0.00 42.43 5.07
2209 3963 1.181098 GGATGCAACAAGGTGCCTGT 61.181 55.000 7.74 0.00 44.26 4.00
2223 3977 2.602676 CCTGTTGTGGACCGGGGAT 61.603 63.158 6.32 0.00 0.00 3.85
2274 4028 2.868583 CGGCAATGAGAACCTGTATCTG 59.131 50.000 0.00 0.00 0.00 2.90
2412 4236 7.164335 GCTGCTTTAACTCGCTAATAAATTGTC 59.836 37.037 0.00 0.00 0.00 3.18
2453 4278 1.207593 CCACTACACGCAGCAAAGC 59.792 57.895 0.00 0.00 0.00 3.51
2454 4279 1.506309 CCACTACACGCAGCAAAGCA 61.506 55.000 0.00 0.00 0.00 3.91
2456 4281 1.021202 ACTACACGCAGCAAAGCAAA 58.979 45.000 0.00 0.00 0.00 3.68
2457 4282 1.403679 ACTACACGCAGCAAAGCAAAA 59.596 42.857 0.00 0.00 0.00 2.44
2458 4283 2.034558 ACTACACGCAGCAAAGCAAAAT 59.965 40.909 0.00 0.00 0.00 1.82
2459 4284 1.490621 ACACGCAGCAAAGCAAAATC 58.509 45.000 0.00 0.00 0.00 2.17
2461 4286 1.190763 CACGCAGCAAAGCAAAATCAC 59.809 47.619 0.00 0.00 0.00 3.06
2462 4287 1.067516 ACGCAGCAAAGCAAAATCACT 59.932 42.857 0.00 0.00 0.00 3.41
2463 4288 2.293122 ACGCAGCAAAGCAAAATCACTA 59.707 40.909 0.00 0.00 0.00 2.74
2465 4290 3.610114 CGCAGCAAAGCAAAATCACTACT 60.610 43.478 0.00 0.00 0.00 2.57
2467 4292 4.149396 GCAGCAAAGCAAAATCACTACTTG 59.851 41.667 0.00 0.00 0.00 3.16
2468 4293 4.149396 CAGCAAAGCAAAATCACTACTTGC 59.851 41.667 0.00 0.00 44.61 4.01
2469 4294 3.429881 GCAAAGCAAAATCACTACTTGCC 59.570 43.478 2.58 0.00 45.23 4.52
2470 4295 4.619973 CAAAGCAAAATCACTACTTGCCA 58.380 39.130 2.58 0.00 45.23 4.92
2533 4561 3.272581 GCATTTAGCATGCCAAAATGGT 58.727 40.909 34.37 14.37 44.79 3.55
2541 4569 2.666272 TGCCAAAATGGTGGTACAGA 57.334 45.000 0.00 0.00 41.80 3.41
2542 4570 2.235016 TGCCAAAATGGTGGTACAGAC 58.765 47.619 0.00 0.00 41.80 3.51
2544 4572 2.625790 GCCAAAATGGTGGTACAGACAA 59.374 45.455 0.00 0.00 41.80 3.18
2545 4573 3.552068 GCCAAAATGGTGGTACAGACAAC 60.552 47.826 0.00 0.00 41.80 3.32
2546 4574 3.634448 CCAAAATGGTGGTACAGACAACA 59.366 43.478 0.00 0.00 41.80 3.33
2547 4575 4.499019 CCAAAATGGTGGTACAGACAACAC 60.499 45.833 0.00 0.00 41.80 3.32
2548 4576 3.857157 AATGGTGGTACAGACAACACT 57.143 42.857 0.00 0.00 41.80 3.55
2549 4577 2.613026 TGGTGGTACAGACAACACTG 57.387 50.000 0.00 0.00 41.80 3.66
2576 4604 1.530013 GCATTGAGCCCAAGTGCACT 61.530 55.000 15.25 15.25 37.08 4.40
2617 4671 9.983804 GATGCAATTAACTAAACTGTAGGTTAC 57.016 33.333 0.00 0.00 37.12 2.50
2618 4672 9.734984 ATGCAATTAACTAAACTGTAGGTTACT 57.265 29.630 0.00 0.00 37.12 2.24
2619 4673 9.211485 TGCAATTAACTAAACTGTAGGTTACTC 57.789 33.333 0.00 0.00 37.12 2.59
2620 4674 8.378421 GCAATTAACTAAACTGTAGGTTACTCG 58.622 37.037 0.00 0.00 37.12 4.18
2621 4675 9.415544 CAATTAACTAAACTGTAGGTTACTCGT 57.584 33.333 0.00 0.00 37.12 4.18
2622 4676 8.976986 ATTAACTAAACTGTAGGTTACTCGTG 57.023 34.615 0.00 0.00 37.12 4.35
2623 4677 6.639632 AACTAAACTGTAGGTTACTCGTGA 57.360 37.500 0.00 0.00 37.12 4.35
2624 4678 6.830873 ACTAAACTGTAGGTTACTCGTGAT 57.169 37.500 0.00 0.00 37.12 3.06
2625 4679 7.928307 ACTAAACTGTAGGTTACTCGTGATA 57.072 36.000 0.00 0.00 37.12 2.15
2626 4680 7.983307 ACTAAACTGTAGGTTACTCGTGATAG 58.017 38.462 0.00 0.00 37.12 2.08
2627 4681 6.830873 AAACTGTAGGTTACTCGTGATAGT 57.169 37.500 0.00 0.00 37.12 2.12
2628 4682 6.434018 AACTGTAGGTTACTCGTGATAGTC 57.566 41.667 0.00 0.00 36.23 2.59
2629 4683 5.494724 ACTGTAGGTTACTCGTGATAGTCA 58.505 41.667 0.00 0.00 0.00 3.41
2630 4684 5.585445 ACTGTAGGTTACTCGTGATAGTCAG 59.415 44.000 0.00 0.00 0.00 3.51
2631 4685 5.737860 TGTAGGTTACTCGTGATAGTCAGA 58.262 41.667 0.00 0.00 0.00 3.27
2632 4686 5.583854 TGTAGGTTACTCGTGATAGTCAGAC 59.416 44.000 0.00 0.00 0.00 3.51
2633 4687 4.586884 AGGTTACTCGTGATAGTCAGACA 58.413 43.478 2.66 0.00 0.00 3.41
2634 4688 5.008331 AGGTTACTCGTGATAGTCAGACAA 58.992 41.667 2.66 0.00 0.00 3.18
2635 4689 5.475909 AGGTTACTCGTGATAGTCAGACAAA 59.524 40.000 2.66 0.00 0.00 2.83
2636 4690 6.015688 AGGTTACTCGTGATAGTCAGACAAAA 60.016 38.462 2.66 0.00 0.00 2.44
2637 4691 6.643770 GGTTACTCGTGATAGTCAGACAAAAA 59.356 38.462 2.66 0.00 0.00 1.94
2638 4692 7.148787 GGTTACTCGTGATAGTCAGACAAAAAG 60.149 40.741 2.66 0.00 0.00 2.27
2639 4693 5.844004 ACTCGTGATAGTCAGACAAAAAGT 58.156 37.500 2.66 0.00 0.00 2.66
2640 4694 6.978338 ACTCGTGATAGTCAGACAAAAAGTA 58.022 36.000 2.66 0.00 0.00 2.24
2641 4695 6.862090 ACTCGTGATAGTCAGACAAAAAGTAC 59.138 38.462 2.66 0.00 0.00 2.73
2642 4696 6.978338 TCGTGATAGTCAGACAAAAAGTACT 58.022 36.000 2.66 0.00 0.00 2.73
2643 4697 8.102800 TCGTGATAGTCAGACAAAAAGTACTA 57.897 34.615 2.66 0.00 0.00 1.82
2644 4698 8.019669 TCGTGATAGTCAGACAAAAAGTACTAC 58.980 37.037 2.66 0.00 0.00 2.73
2645 4699 8.021973 CGTGATAGTCAGACAAAAAGTACTACT 58.978 37.037 2.66 0.00 0.00 2.57
2646 4700 9.344309 GTGATAGTCAGACAAAAAGTACTACTC 57.656 37.037 2.66 0.00 0.00 2.59
2647 4701 8.521176 TGATAGTCAGACAAAAAGTACTACTCC 58.479 37.037 2.66 0.00 0.00 3.85
2648 4702 6.099159 AGTCAGACAAAAAGTACTACTCCC 57.901 41.667 2.66 0.00 0.00 4.30
2649 4703 5.839606 AGTCAGACAAAAAGTACTACTCCCT 59.160 40.000 2.66 0.00 0.00 4.20
2650 4704 6.015265 AGTCAGACAAAAAGTACTACTCCCTC 60.015 42.308 2.66 0.00 0.00 4.30
2651 4705 6.015265 GTCAGACAAAAAGTACTACTCCCTCT 60.015 42.308 0.00 0.00 0.00 3.69
2652 4706 6.015350 TCAGACAAAAAGTACTACTCCCTCTG 60.015 42.308 0.00 3.22 0.00 3.35
2653 4707 5.839606 AGACAAAAAGTACTACTCCCTCTGT 59.160 40.000 0.00 0.00 0.00 3.41
2654 4708 6.326843 AGACAAAAAGTACTACTCCCTCTGTT 59.673 38.462 0.00 0.00 0.00 3.16
2655 4709 6.522946 ACAAAAAGTACTACTCCCTCTGTTC 58.477 40.000 0.00 0.00 0.00 3.18
2656 4710 5.741962 AAAAGTACTACTCCCTCTGTTCC 57.258 43.478 0.00 0.00 0.00 3.62
2657 4711 4.399483 AAGTACTACTCCCTCTGTTCCA 57.601 45.455 0.00 0.00 0.00 3.53
2658 4712 4.399483 AGTACTACTCCCTCTGTTCCAA 57.601 45.455 0.00 0.00 0.00 3.53
2659 4713 4.748701 AGTACTACTCCCTCTGTTCCAAA 58.251 43.478 0.00 0.00 0.00 3.28
2660 4714 5.152934 AGTACTACTCCCTCTGTTCCAAAA 58.847 41.667 0.00 0.00 0.00 2.44
2661 4715 5.785940 AGTACTACTCCCTCTGTTCCAAAAT 59.214 40.000 0.00 0.00 0.00 1.82
2662 4716 6.958192 AGTACTACTCCCTCTGTTCCAAAATA 59.042 38.462 0.00 0.00 0.00 1.40
2663 4717 6.893020 ACTACTCCCTCTGTTCCAAAATAT 57.107 37.500 0.00 0.00 0.00 1.28
2664 4718 7.989947 ACTACTCCCTCTGTTCCAAAATATA 57.010 36.000 0.00 0.00 0.00 0.86
2665 4719 8.388656 ACTACTCCCTCTGTTCCAAAATATAA 57.611 34.615 0.00 0.00 0.00 0.98
2666 4720 8.487028 ACTACTCCCTCTGTTCCAAAATATAAG 58.513 37.037 0.00 0.00 0.00 1.73
2667 4721 6.663734 ACTCCCTCTGTTCCAAAATATAAGG 58.336 40.000 0.00 0.00 0.00 2.69
2668 4722 6.217693 ACTCCCTCTGTTCCAAAATATAAGGT 59.782 38.462 0.00 0.00 0.00 3.50
2669 4723 6.423182 TCCCTCTGTTCCAAAATATAAGGTG 58.577 40.000 0.00 0.00 0.00 4.00
2670 4724 6.011981 TCCCTCTGTTCCAAAATATAAGGTGT 60.012 38.462 0.00 0.00 0.00 4.16
2671 4725 7.183112 TCCCTCTGTTCCAAAATATAAGGTGTA 59.817 37.037 0.00 0.00 0.00 2.90
2672 4726 7.998964 CCCTCTGTTCCAAAATATAAGGTGTAT 59.001 37.037 0.00 0.00 0.00 2.29
2673 4727 9.408648 CCTCTGTTCCAAAATATAAGGTGTATT 57.591 33.333 0.00 0.00 0.00 1.89
2690 4744 8.528044 AGGTGTATTAGTTTTTCCAAAAGTCA 57.472 30.769 0.00 0.00 0.00 3.41
2691 4745 8.973182 AGGTGTATTAGTTTTTCCAAAAGTCAA 58.027 29.630 0.00 0.00 0.00 3.18
2692 4746 9.589111 GGTGTATTAGTTTTTCCAAAAGTCAAA 57.411 29.630 0.00 0.00 0.00 2.69
2697 4751 9.665719 ATTAGTTTTTCCAAAAGTCAAACATGT 57.334 25.926 0.00 0.00 31.06 3.21
2698 4752 7.363205 AGTTTTTCCAAAAGTCAAACATGTG 57.637 32.000 0.00 0.00 31.06 3.21
2699 4753 5.793026 TTTTCCAAAAGTCAAACATGTGC 57.207 34.783 0.00 0.00 0.00 4.57
2700 4754 4.462508 TTCCAAAAGTCAAACATGTGCA 57.537 36.364 0.00 0.00 0.00 4.57
2701 4755 3.779759 TCCAAAAGTCAAACATGTGCAC 58.220 40.909 10.75 10.75 0.00 4.57
2702 4756 2.535166 CCAAAAGTCAAACATGTGCACG 59.465 45.455 13.13 0.65 0.00 5.34
2703 4757 3.178267 CAAAAGTCAAACATGTGCACGT 58.822 40.909 13.13 9.52 0.00 4.49
2704 4758 3.502191 AAAGTCAAACATGTGCACGTT 57.498 38.095 9.37 6.56 0.00 3.99
2705 4759 3.502191 AAGTCAAACATGTGCACGTTT 57.498 38.095 9.37 12.66 35.76 3.60
2709 4763 2.202295 AAACATGTGCACGTTTGACC 57.798 45.000 18.34 0.00 34.16 4.02
2710 4764 1.098869 AACATGTGCACGTTTGACCA 58.901 45.000 9.37 0.00 0.00 4.02
2711 4765 1.098869 ACATGTGCACGTTTGACCAA 58.901 45.000 9.37 0.00 0.00 3.67
2712 4766 1.474478 ACATGTGCACGTTTGACCAAA 59.526 42.857 9.37 0.00 0.00 3.28
2713 4767 2.100584 ACATGTGCACGTTTGACCAAAT 59.899 40.909 9.37 0.00 32.36 2.32
2714 4768 2.949451 TGTGCACGTTTGACCAAATT 57.051 40.000 13.13 0.00 32.36 1.82
2715 4769 3.238108 TGTGCACGTTTGACCAAATTT 57.762 38.095 13.13 0.00 32.36 1.82
2716 4770 3.589988 TGTGCACGTTTGACCAAATTTT 58.410 36.364 13.13 0.00 32.36 1.82
2717 4771 3.997021 TGTGCACGTTTGACCAAATTTTT 59.003 34.783 13.13 0.00 32.36 1.94
2718 4772 5.168569 TGTGCACGTTTGACCAAATTTTTA 58.831 33.333 13.13 0.00 32.36 1.52
2719 4773 5.289675 TGTGCACGTTTGACCAAATTTTTAG 59.710 36.000 13.13 0.00 32.36 1.85
2720 4774 5.517054 GTGCACGTTTGACCAAATTTTTAGA 59.483 36.000 0.00 0.00 32.36 2.10
2721 4775 6.035112 GTGCACGTTTGACCAAATTTTTAGAA 59.965 34.615 0.00 0.00 32.36 2.10
2722 4776 6.590292 TGCACGTTTGACCAAATTTTTAGAAA 59.410 30.769 0.00 0.00 32.36 2.52
2723 4777 7.117812 TGCACGTTTGACCAAATTTTTAGAAAA 59.882 29.630 0.00 0.00 32.36 2.29
2724 4778 7.958025 GCACGTTTGACCAAATTTTTAGAAAAA 59.042 29.630 2.82 2.82 41.59 1.94
2761 4815 9.976511 TCGATTAGATCCATCGTAAAAAGTATT 57.023 29.630 19.28 0.00 43.36 1.89
2836 4890 8.592105 ATCTTGGTCAAACATACACAAATTTG 57.408 30.769 16.67 16.67 34.11 2.32
2837 4891 7.776107 TCTTGGTCAAACATACACAAATTTGA 58.224 30.769 24.64 2.69 38.42 2.69
2842 4896 7.462109 TCAAACATACACAAATTTGACTTGC 57.538 32.000 24.64 0.00 36.42 4.01
2843 4897 7.038048 TCAAACATACACAAATTTGACTTGCA 58.962 30.769 24.64 4.03 36.42 4.08
2844 4898 6.826893 AACATACACAAATTTGACTTGCAC 57.173 33.333 24.64 0.00 0.00 4.57
2845 4899 5.900425 ACATACACAAATTTGACTTGCACA 58.100 33.333 24.64 2.88 0.00 4.57
2846 4900 6.336566 ACATACACAAATTTGACTTGCACAA 58.663 32.000 24.64 0.97 0.00 3.33
2847 4901 6.815641 ACATACACAAATTTGACTTGCACAAA 59.184 30.769 24.64 3.73 40.62 2.83
2848 4902 7.332926 ACATACACAAATTTGACTTGCACAAAA 59.667 29.630 24.64 0.00 39.95 2.44
2849 4903 6.551385 ACACAAATTTGACTTGCACAAAAA 57.449 29.167 24.64 0.00 39.95 1.94
2850 4904 7.143514 ACACAAATTTGACTTGCACAAAAAT 57.856 28.000 24.64 0.00 39.95 1.82
2851 4905 7.242783 ACACAAATTTGACTTGCACAAAAATC 58.757 30.769 24.64 0.00 39.95 2.17
2852 4906 6.408611 CACAAATTTGACTTGCACAAAAATCG 59.591 34.615 24.64 0.00 39.95 3.34
2853 4907 6.312426 ACAAATTTGACTTGCACAAAAATCGA 59.688 30.769 24.64 0.00 39.95 3.59
2854 4908 7.011295 ACAAATTTGACTTGCACAAAAATCGAT 59.989 29.630 24.64 0.00 39.95 3.59
2855 4909 8.486383 CAAATTTGACTTGCACAAAAATCGATA 58.514 29.630 13.08 0.00 39.95 2.92
2856 4910 6.984740 TTTGACTTGCACAAAAATCGATAC 57.015 33.333 0.00 0.00 34.89 2.24
2857 4911 5.681337 TGACTTGCACAAAAATCGATACA 57.319 34.783 0.00 0.00 0.00 2.29
2858 4912 5.448438 TGACTTGCACAAAAATCGATACAC 58.552 37.500 0.00 0.00 0.00 2.90
2859 4913 4.794169 ACTTGCACAAAAATCGATACACC 58.206 39.130 0.00 0.00 0.00 4.16
2860 4914 4.518970 ACTTGCACAAAAATCGATACACCT 59.481 37.500 0.00 0.00 0.00 4.00
2861 4915 5.009610 ACTTGCACAAAAATCGATACACCTT 59.990 36.000 0.00 0.00 0.00 3.50
2862 4916 6.205853 ACTTGCACAAAAATCGATACACCTTA 59.794 34.615 0.00 0.00 0.00 2.69
2863 4917 6.751514 TGCACAAAAATCGATACACCTTAT 57.248 33.333 0.00 0.00 0.00 1.73
2864 4918 7.851387 TGCACAAAAATCGATACACCTTATA 57.149 32.000 0.00 0.00 0.00 0.98
2865 4919 8.445275 TGCACAAAAATCGATACACCTTATAT 57.555 30.769 0.00 0.00 0.00 0.86
2866 4920 8.898761 TGCACAAAAATCGATACACCTTATATT 58.101 29.630 0.00 0.00 0.00 1.28
2867 4921 9.382244 GCACAAAAATCGATACACCTTATATTC 57.618 33.333 0.00 0.00 0.00 1.75
2873 4927 9.490379 AAATCGATACACCTTATATTCTGGAAC 57.510 33.333 0.00 0.00 0.00 3.62
2874 4928 6.675026 TCGATACACCTTATATTCTGGAACG 58.325 40.000 0.00 0.00 0.00 3.95
2875 4929 5.862323 CGATACACCTTATATTCTGGAACGG 59.138 44.000 0.00 0.00 0.00 4.44
2876 4930 6.294342 CGATACACCTTATATTCTGGAACGGA 60.294 42.308 0.00 0.00 45.11 4.69
2943 5252 0.768622 TCAGGGAAAGGGCGAAAGAA 59.231 50.000 0.00 0.00 0.00 2.52
2950 5259 1.156736 AAGGGCGAAAGAACATCGTG 58.843 50.000 0.00 0.00 42.15 4.35
2954 5263 2.540101 GGGCGAAAGAACATCGTGATAG 59.460 50.000 0.00 0.00 42.15 2.08
3004 5313 3.871006 TGTTGCTGATACTTCTATTGGCG 59.129 43.478 0.00 0.00 0.00 5.69
3048 5357 9.981114 CAAGTTTAAAGGTAGTCCATTGATTTT 57.019 29.630 0.00 0.00 35.89 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 123 1.135915 ACGTCTCTAGCAGCAATCTGG 59.864 52.381 0.00 0.00 40.65 3.86
284 327 1.603802 ACGATGTTTGGCTCAACAGTG 59.396 47.619 8.47 0.00 0.00 3.66
367 444 6.687105 GCATTAGACCTTATAAAACAGTTGCG 59.313 38.462 0.00 0.00 0.00 4.85
375 453 6.062095 GGCCTCTGCATTAGACCTTATAAAA 58.938 40.000 0.00 0.00 40.13 1.52
450 635 0.982673 CAACATCCGAACGACTCGTC 59.017 55.000 4.17 0.00 46.65 4.20
451 636 0.594602 TCAACATCCGAACGACTCGT 59.405 50.000 0.00 0.00 46.65 4.18
453 638 2.095161 AGTCTCAACATCCGAACGACTC 60.095 50.000 0.00 0.00 0.00 3.36
454 639 1.887198 AGTCTCAACATCCGAACGACT 59.113 47.619 0.00 0.00 0.00 4.18
455 640 2.251893 GAGTCTCAACATCCGAACGAC 58.748 52.381 0.00 0.00 0.00 4.34
456 641 1.883926 TGAGTCTCAACATCCGAACGA 59.116 47.619 0.00 0.00 0.00 3.85
457 642 2.347697 TGAGTCTCAACATCCGAACG 57.652 50.000 0.00 0.00 0.00 3.95
458 643 5.038033 GTCTATGAGTCTCAACATCCGAAC 58.962 45.833 6.64 0.00 0.00 3.95
459 644 4.950475 AGTCTATGAGTCTCAACATCCGAA 59.050 41.667 6.64 0.00 0.00 4.30
460 645 4.527944 AGTCTATGAGTCTCAACATCCGA 58.472 43.478 6.64 0.00 0.00 4.55
461 646 4.909696 AGTCTATGAGTCTCAACATCCG 57.090 45.455 6.64 0.00 0.00 4.18
462 647 7.081349 CGATTAGTCTATGAGTCTCAACATCC 58.919 42.308 6.64 0.00 0.00 3.51
463 648 7.589587 CACGATTAGTCTATGAGTCTCAACATC 59.410 40.741 6.64 0.97 0.00 3.06
464 649 7.283354 TCACGATTAGTCTATGAGTCTCAACAT 59.717 37.037 6.64 0.00 0.00 2.71
465 650 6.598064 TCACGATTAGTCTATGAGTCTCAACA 59.402 38.462 6.64 0.00 0.00 3.33
466 651 6.908284 GTCACGATTAGTCTATGAGTCTCAAC 59.092 42.308 6.64 0.61 0.00 3.18
467 652 6.598064 TGTCACGATTAGTCTATGAGTCTCAA 59.402 38.462 6.64 0.00 0.00 3.02
468 653 6.113411 TGTCACGATTAGTCTATGAGTCTCA 58.887 40.000 4.68 4.68 0.00 3.27
469 654 6.606234 TGTCACGATTAGTCTATGAGTCTC 57.394 41.667 0.00 0.00 0.00 3.36
470 655 6.600032 ACTTGTCACGATTAGTCTATGAGTCT 59.400 38.462 0.00 0.00 0.00 3.24
471 656 6.787225 ACTTGTCACGATTAGTCTATGAGTC 58.213 40.000 0.00 0.00 0.00 3.36
472 657 6.457122 CGACTTGTCACGATTAGTCTATGAGT 60.457 42.308 0.00 0.00 35.89 3.41
473 658 5.904630 CGACTTGTCACGATTAGTCTATGAG 59.095 44.000 0.00 0.00 35.89 2.90
474 659 5.583457 TCGACTTGTCACGATTAGTCTATGA 59.417 40.000 0.00 0.00 35.89 2.15
475 660 5.677612 GTCGACTTGTCACGATTAGTCTATG 59.322 44.000 8.70 0.00 40.50 2.23
476 661 5.353400 TGTCGACTTGTCACGATTAGTCTAT 59.647 40.000 17.92 0.00 40.50 1.98
477 662 4.692155 TGTCGACTTGTCACGATTAGTCTA 59.308 41.667 17.92 0.00 40.50 2.59
478 663 3.501062 TGTCGACTTGTCACGATTAGTCT 59.499 43.478 17.92 0.00 40.50 3.24
479 664 3.602915 GTGTCGACTTGTCACGATTAGTC 59.397 47.826 17.92 0.00 40.50 2.59
480 665 3.252701 AGTGTCGACTTGTCACGATTAGT 59.747 43.478 17.92 0.00 40.87 2.24
481 666 3.604198 CAGTGTCGACTTGTCACGATTAG 59.396 47.826 17.92 0.00 40.87 1.73
482 667 3.251487 TCAGTGTCGACTTGTCACGATTA 59.749 43.478 17.92 0.00 40.87 1.75
483 668 2.034179 TCAGTGTCGACTTGTCACGATT 59.966 45.455 17.92 0.00 40.87 3.34
484 669 1.607148 TCAGTGTCGACTTGTCACGAT 59.393 47.619 17.92 0.00 40.87 3.73
485 670 1.018910 TCAGTGTCGACTTGTCACGA 58.981 50.000 17.92 5.51 40.87 4.35
486 671 1.781429 CTTCAGTGTCGACTTGTCACG 59.219 52.381 17.92 3.33 40.87 4.35
487 672 2.810650 ACTTCAGTGTCGACTTGTCAC 58.189 47.619 17.92 6.04 36.96 3.67
488 673 3.186909 CAACTTCAGTGTCGACTTGTCA 58.813 45.455 17.92 6.21 0.00 3.58
489 674 3.000322 CACAACTTCAGTGTCGACTTGTC 60.000 47.826 17.92 4.95 32.44 3.18
490 675 2.930040 CACAACTTCAGTGTCGACTTGT 59.070 45.455 17.92 13.53 32.44 3.16
491 676 3.000322 GTCACAACTTCAGTGTCGACTTG 60.000 47.826 17.92 14.80 38.16 3.16
492 677 3.119101 AGTCACAACTTCAGTGTCGACTT 60.119 43.478 17.92 1.92 38.16 3.01
493 678 2.427453 AGTCACAACTTCAGTGTCGACT 59.573 45.455 17.92 0.00 38.16 4.18
494 679 2.789893 GAGTCACAACTTCAGTGTCGAC 59.210 50.000 9.11 9.11 38.16 4.20
495 680 2.425668 TGAGTCACAACTTCAGTGTCGA 59.574 45.455 0.00 0.00 38.16 4.20
496 681 2.809446 TGAGTCACAACTTCAGTGTCG 58.191 47.619 0.00 0.00 38.16 4.35
497 682 5.631512 GTCTATGAGTCACAACTTCAGTGTC 59.368 44.000 0.00 0.00 38.16 3.67
498 683 5.303078 AGTCTATGAGTCACAACTTCAGTGT 59.697 40.000 0.00 0.00 38.16 3.55
499 684 5.777802 AGTCTATGAGTCACAACTTCAGTG 58.222 41.667 0.00 0.00 35.28 3.66
500 685 6.717540 ACTAGTCTATGAGTCACAACTTCAGT 59.282 38.462 0.00 0.00 35.28 3.41
501 686 7.151999 ACTAGTCTATGAGTCACAACTTCAG 57.848 40.000 0.00 0.00 35.28 3.02
502 687 6.128254 CGACTAGTCTATGAGTCACAACTTCA 60.128 42.308 20.34 0.00 41.87 3.02
503 688 6.092396 TCGACTAGTCTATGAGTCACAACTTC 59.908 42.308 20.34 0.00 41.87 3.01
504 689 5.938710 TCGACTAGTCTATGAGTCACAACTT 59.061 40.000 20.34 0.00 41.87 2.66
505 690 5.352016 GTCGACTAGTCTATGAGTCACAACT 59.648 44.000 20.34 2.01 41.87 3.16
506 691 5.121925 TGTCGACTAGTCTATGAGTCACAAC 59.878 44.000 20.34 0.00 41.87 3.32
507 692 5.121925 GTGTCGACTAGTCTATGAGTCACAA 59.878 44.000 20.34 0.00 41.87 3.33
508 693 4.630505 GTGTCGACTAGTCTATGAGTCACA 59.369 45.833 20.34 7.31 41.87 3.58
509 694 4.871557 AGTGTCGACTAGTCTATGAGTCAC 59.128 45.833 20.34 16.12 41.87 3.67
510 695 4.870991 CAGTGTCGACTAGTCTATGAGTCA 59.129 45.833 20.34 6.02 41.87 3.41
511 696 5.110598 TCAGTGTCGACTAGTCTATGAGTC 58.889 45.833 20.34 3.58 38.99 3.36
512 697 5.087391 TCAGTGTCGACTAGTCTATGAGT 57.913 43.478 20.34 2.51 0.00 3.41
513 698 5.583061 ACTTCAGTGTCGACTAGTCTATGAG 59.417 44.000 20.34 4.93 0.00 2.90
514 699 5.351740 CACTTCAGTGTCGACTAGTCTATGA 59.648 44.000 20.34 13.04 40.96 2.15
515 700 5.564768 CACTTCAGTGTCGACTAGTCTATG 58.435 45.833 20.34 11.17 40.96 2.23
516 701 5.804692 CACTTCAGTGTCGACTAGTCTAT 57.195 43.478 20.34 0.00 40.96 1.98
530 715 1.542187 GGGCCCGACTACACTTCAGT 61.542 60.000 5.69 0.00 0.00 3.41
531 716 1.218316 GGGCCCGACTACACTTCAG 59.782 63.158 5.69 0.00 0.00 3.02
532 717 1.229082 AGGGCCCGACTACACTTCA 60.229 57.895 18.44 0.00 0.00 3.02
533 718 1.218316 CAGGGCCCGACTACACTTC 59.782 63.158 18.44 0.00 0.00 3.01
534 719 2.291043 CCAGGGCCCGACTACACTT 61.291 63.158 18.44 0.00 0.00 3.16
535 720 2.683933 CCAGGGCCCGACTACACT 60.684 66.667 18.44 0.00 0.00 3.55
536 721 2.682494 TCCAGGGCCCGACTACAC 60.682 66.667 18.44 0.00 0.00 2.90
537 722 2.363795 CTCCAGGGCCCGACTACA 60.364 66.667 18.44 0.00 0.00 2.74
538 723 1.988406 AACTCCAGGGCCCGACTAC 60.988 63.158 18.44 0.00 0.00 2.73
539 724 1.987855 CAACTCCAGGGCCCGACTA 60.988 63.158 18.44 2.14 0.00 2.59
540 725 3.322466 CAACTCCAGGGCCCGACT 61.322 66.667 18.44 0.00 0.00 4.18
545 730 3.959991 GAGTCGCAACTCCAGGGCC 62.960 68.421 0.00 0.00 45.26 5.80
609 794 3.788142 ACCCACTCATTACTTCCATGGAT 59.212 43.478 17.06 3.82 0.00 3.41
794 2519 6.627953 CGGAGGGCAGTATTTCAAATTTTCAT 60.628 38.462 0.00 0.00 0.00 2.57
901 2650 8.311109 AGAGAGAGGAAAATTTAGAGTGAACTC 58.689 37.037 2.06 2.06 43.17 3.01
969 2720 4.214332 CCCTTCTTTGAGCTAACAAGTGAC 59.786 45.833 0.00 0.00 0.00 3.67
980 2731 1.271926 TGCTTACCCCCTTCTTTGAGC 60.272 52.381 0.00 0.00 0.00 4.26
1007 2758 0.980423 GACCAAGTGGAGAGAAGGCT 59.020 55.000 3.83 0.00 38.94 4.58
1028 2779 2.885266 CAAGGAATCAGGAGCATGATGG 59.115 50.000 0.00 0.00 39.84 3.51
1225 2976 3.231736 AACCCAGACGACGGTGCT 61.232 61.111 0.00 0.00 30.96 4.40
1251 3002 2.562738 AGCATCGGTGATCGGATTATCA 59.437 45.455 0.00 0.00 39.77 2.15
1299 3050 3.477530 GGACAACACAAGGCTAGAGTTT 58.522 45.455 0.00 0.00 0.00 2.66
1596 3347 1.363744 CATTCCAGACGAAGGACTGC 58.636 55.000 0.00 0.00 34.05 4.40
1908 3662 2.622942 GGAAATTGCCTCTGTGTTGTCA 59.377 45.455 0.00 0.00 0.00 3.58
2039 3793 2.424956 GCTGGCTAGGTCAAGAAATTGG 59.575 50.000 0.00 0.00 0.00 3.16
2070 3824 2.869801 CAAGCGTACAAACTTGTCTGGA 59.130 45.455 10.59 0.00 42.35 3.86
2089 3843 5.769662 AGTCATCATAGCTTTTGTTCCACAA 59.230 36.000 0.00 0.00 36.11 3.33
2209 3963 0.620410 ATCAGATCCCCGGTCCACAA 60.620 55.000 0.00 0.00 0.00 3.33
2223 3977 3.054875 CACCCTTCTCCACATCAATCAGA 60.055 47.826 0.00 0.00 0.00 3.27
2274 4028 1.234615 TTGACAAGGTAGCAAGCCGC 61.235 55.000 0.00 0.00 42.91 6.53
2412 4236 1.002033 GAGCCAAAGTGTCAGCAACTG 60.002 52.381 0.00 0.00 0.00 3.16
2453 4278 3.928375 GGCAATGGCAAGTAGTGATTTTG 59.072 43.478 0.58 0.00 43.71 2.44
2454 4279 3.577848 TGGCAATGGCAAGTAGTGATTTT 59.422 39.130 7.14 0.00 43.71 1.82
2456 4281 2.806434 TGGCAATGGCAAGTAGTGATT 58.194 42.857 7.14 0.00 43.71 2.57
2457 4282 2.512692 TGGCAATGGCAAGTAGTGAT 57.487 45.000 7.14 0.00 43.71 3.06
2458 4283 2.512692 ATGGCAATGGCAAGTAGTGA 57.487 45.000 14.81 0.00 42.43 3.41
2459 4284 3.255725 CAAATGGCAATGGCAAGTAGTG 58.744 45.455 14.81 4.05 42.43 2.74
2461 4286 2.273557 GCAAATGGCAATGGCAAGTAG 58.726 47.619 14.81 5.61 42.43 2.57
2462 4287 2.383368 GCAAATGGCAATGGCAAGTA 57.617 45.000 14.81 0.00 42.43 2.24
2463 4288 3.236604 GCAAATGGCAATGGCAAGT 57.763 47.368 14.81 1.64 42.43 3.16
2519 4547 1.274728 TGTACCACCATTTTGGCATGC 59.725 47.619 9.90 9.90 42.67 4.06
2520 4548 2.824936 TCTGTACCACCATTTTGGCATG 59.175 45.455 0.00 0.00 42.67 4.06
2533 4561 6.459024 GCATTTTAACAGTGTTGTCTGTACCA 60.459 38.462 18.90 0.00 46.25 3.25
2541 4569 5.463061 GCTCAATGCATTTTAACAGTGTTGT 59.537 36.000 18.90 0.00 42.31 3.32
2542 4570 5.107375 GGCTCAATGCATTTTAACAGTGTTG 60.107 40.000 18.90 3.04 45.15 3.33
2544 4572 4.559153 GGCTCAATGCATTTTAACAGTGT 58.441 39.130 9.83 0.00 45.15 3.55
2545 4573 3.928375 GGGCTCAATGCATTTTAACAGTG 59.072 43.478 9.83 0.00 45.15 3.66
2546 4574 3.577848 TGGGCTCAATGCATTTTAACAGT 59.422 39.130 9.83 0.00 45.15 3.55
2547 4575 4.191033 TGGGCTCAATGCATTTTAACAG 57.809 40.909 9.83 2.27 45.15 3.16
2548 4576 4.040217 ACTTGGGCTCAATGCATTTTAACA 59.960 37.500 9.83 2.94 45.15 2.41
2549 4577 4.389687 CACTTGGGCTCAATGCATTTTAAC 59.610 41.667 9.83 0.78 45.15 2.01
2550 4578 4.567971 CACTTGGGCTCAATGCATTTTAA 58.432 39.130 9.83 0.00 45.15 1.52
2551 4579 3.617045 GCACTTGGGCTCAATGCATTTTA 60.617 43.478 21.45 0.00 45.15 1.52
2552 4580 2.872842 GCACTTGGGCTCAATGCATTTT 60.873 45.455 21.45 0.00 45.15 1.82
2553 4581 1.338389 GCACTTGGGCTCAATGCATTT 60.338 47.619 21.45 0.00 45.15 2.32
2554 4582 0.248289 GCACTTGGGCTCAATGCATT 59.752 50.000 21.45 5.99 45.15 3.56
2555 4583 0.901114 TGCACTTGGGCTCAATGCAT 60.901 50.000 23.77 0.00 41.18 3.96
2556 4584 1.531128 TGCACTTGGGCTCAATGCA 60.531 52.632 23.77 23.77 43.70 3.96
2557 4585 1.080298 GTGCACTTGGGCTCAATGC 60.080 57.895 20.28 20.28 41.94 3.56
2558 4586 0.963962 AAGTGCACTTGGGCTCAATG 59.036 50.000 30.66 1.73 34.38 2.82
2559 4587 1.202976 AGAAGTGCACTTGGGCTCAAT 60.203 47.619 35.67 9.42 36.11 2.57
2560 4588 0.183492 AGAAGTGCACTTGGGCTCAA 59.817 50.000 35.67 0.00 36.11 3.02
2576 4604 9.638239 GTTAATTGCATCAGGAATGTTTTAGAA 57.362 29.630 0.00 0.00 35.82 2.10
2617 4671 7.085116 AGTACTTTTTGTCTGACTATCACGAG 58.915 38.462 9.51 1.41 0.00 4.18
2618 4672 6.978338 AGTACTTTTTGTCTGACTATCACGA 58.022 36.000 9.51 0.00 0.00 4.35
2619 4673 8.021973 AGTAGTACTTTTTGTCTGACTATCACG 58.978 37.037 9.51 0.00 0.00 4.35
2620 4674 9.344309 GAGTAGTACTTTTTGTCTGACTATCAC 57.656 37.037 9.51 0.00 0.00 3.06
2621 4675 8.521176 GGAGTAGTACTTTTTGTCTGACTATCA 58.479 37.037 9.51 0.00 0.00 2.15
2622 4676 7.975058 GGGAGTAGTACTTTTTGTCTGACTATC 59.025 40.741 9.51 0.00 0.00 2.08
2623 4677 7.674772 AGGGAGTAGTACTTTTTGTCTGACTAT 59.325 37.037 9.51 0.00 0.00 2.12
2624 4678 7.008941 AGGGAGTAGTACTTTTTGTCTGACTA 58.991 38.462 9.51 0.00 0.00 2.59
2625 4679 5.839606 AGGGAGTAGTACTTTTTGTCTGACT 59.160 40.000 9.51 0.00 0.00 3.41
2626 4680 6.015265 AGAGGGAGTAGTACTTTTTGTCTGAC 60.015 42.308 0.00 0.00 0.00 3.51
2627 4681 6.015350 CAGAGGGAGTAGTACTTTTTGTCTGA 60.015 42.308 16.47 0.00 0.00 3.27
2628 4682 6.159988 CAGAGGGAGTAGTACTTTTTGTCTG 58.840 44.000 0.00 8.90 0.00 3.51
2629 4683 5.839606 ACAGAGGGAGTAGTACTTTTTGTCT 59.160 40.000 0.00 0.75 0.00 3.41
2630 4684 6.099159 ACAGAGGGAGTAGTACTTTTTGTC 57.901 41.667 0.00 0.00 0.00 3.18
2631 4685 6.464039 GGAACAGAGGGAGTAGTACTTTTTGT 60.464 42.308 0.00 3.09 0.00 2.83
2632 4686 5.932883 GGAACAGAGGGAGTAGTACTTTTTG 59.067 44.000 0.00 2.52 0.00 2.44
2633 4687 5.605488 TGGAACAGAGGGAGTAGTACTTTTT 59.395 40.000 0.00 0.00 0.00 1.94
2634 4688 5.152934 TGGAACAGAGGGAGTAGTACTTTT 58.847 41.667 0.00 0.00 0.00 2.27
2635 4689 4.748701 TGGAACAGAGGGAGTAGTACTTT 58.251 43.478 0.00 0.00 0.00 2.66
2636 4690 4.399483 TGGAACAGAGGGAGTAGTACTT 57.601 45.455 0.00 0.00 0.00 2.24
2637 4691 4.399483 TTGGAACAGAGGGAGTAGTACT 57.601 45.455 1.37 1.37 42.39 2.73
2638 4692 5.479124 TTTTGGAACAGAGGGAGTAGTAC 57.521 43.478 0.00 0.00 42.39 2.73
2639 4693 7.989947 ATATTTTGGAACAGAGGGAGTAGTA 57.010 36.000 0.00 0.00 42.39 1.82
2640 4694 6.893020 ATATTTTGGAACAGAGGGAGTAGT 57.107 37.500 0.00 0.00 42.39 2.73
2641 4695 7.934120 CCTTATATTTTGGAACAGAGGGAGTAG 59.066 40.741 0.00 0.00 42.39 2.57
2642 4696 7.404980 ACCTTATATTTTGGAACAGAGGGAGTA 59.595 37.037 0.00 0.00 42.39 2.59
2643 4697 6.217693 ACCTTATATTTTGGAACAGAGGGAGT 59.782 38.462 0.00 0.00 42.39 3.85
2644 4698 6.543831 CACCTTATATTTTGGAACAGAGGGAG 59.456 42.308 0.00 0.00 42.39 4.30
2645 4699 6.011981 ACACCTTATATTTTGGAACAGAGGGA 60.012 38.462 0.00 0.00 42.39 4.20
2646 4700 6.187682 ACACCTTATATTTTGGAACAGAGGG 58.812 40.000 0.00 0.00 42.39 4.30
2647 4701 8.980481 ATACACCTTATATTTTGGAACAGAGG 57.020 34.615 0.00 0.00 42.39 3.69
2664 4718 8.973182 TGACTTTTGGAAAAACTAATACACCTT 58.027 29.630 0.00 0.00 0.00 3.50
2665 4719 8.528044 TGACTTTTGGAAAAACTAATACACCT 57.472 30.769 0.00 0.00 0.00 4.00
2666 4720 9.589111 TTTGACTTTTGGAAAAACTAATACACC 57.411 29.630 0.00 0.00 0.00 4.16
2671 4725 9.665719 ACATGTTTGACTTTTGGAAAAACTAAT 57.334 25.926 0.00 0.00 33.07 1.73
2672 4726 8.930760 CACATGTTTGACTTTTGGAAAAACTAA 58.069 29.630 0.00 0.00 33.07 2.24
2673 4727 7.064016 GCACATGTTTGACTTTTGGAAAAACTA 59.936 33.333 0.00 0.00 33.07 2.24
2674 4728 6.128309 GCACATGTTTGACTTTTGGAAAAACT 60.128 34.615 0.00 0.00 33.07 2.66
2675 4729 6.020984 GCACATGTTTGACTTTTGGAAAAAC 58.979 36.000 0.00 0.00 0.00 2.43
2676 4730 5.702670 TGCACATGTTTGACTTTTGGAAAAA 59.297 32.000 0.00 0.00 0.00 1.94
2677 4731 5.121454 GTGCACATGTTTGACTTTTGGAAAA 59.879 36.000 13.17 0.00 0.00 2.29
2678 4732 4.629200 GTGCACATGTTTGACTTTTGGAAA 59.371 37.500 13.17 0.00 0.00 3.13
2679 4733 4.180057 GTGCACATGTTTGACTTTTGGAA 58.820 39.130 13.17 0.00 0.00 3.53
2680 4734 3.733380 CGTGCACATGTTTGACTTTTGGA 60.733 43.478 18.64 0.00 0.00 3.53
2681 4735 2.535166 CGTGCACATGTTTGACTTTTGG 59.465 45.455 18.64 0.00 0.00 3.28
2682 4736 3.178267 ACGTGCACATGTTTGACTTTTG 58.822 40.909 18.64 0.00 0.00 2.44
2683 4737 3.502191 ACGTGCACATGTTTGACTTTT 57.498 38.095 18.64 0.00 0.00 2.27
2684 4738 3.502191 AACGTGCACATGTTTGACTTT 57.498 38.095 18.64 0.00 37.24 2.66
2685 4739 3.502191 AAACGTGCACATGTTTGACTT 57.498 38.095 18.64 0.00 45.67 3.01
2691 4745 1.098869 TGGTCAAACGTGCACATGTT 58.901 45.000 18.64 10.95 41.91 2.71
2692 4746 1.098869 TTGGTCAAACGTGCACATGT 58.901 45.000 18.64 4.41 0.00 3.21
2693 4747 2.200792 TTTGGTCAAACGTGCACATG 57.799 45.000 18.64 12.44 0.00 3.21
2694 4748 3.451141 AATTTGGTCAAACGTGCACAT 57.549 38.095 18.64 0.00 32.51 3.21
2695 4749 2.949451 AATTTGGTCAAACGTGCACA 57.051 40.000 18.64 0.00 32.51 4.57
2696 4750 4.591998 AAAAATTTGGTCAAACGTGCAC 57.408 36.364 6.82 6.82 32.51 4.57
2697 4751 5.651530 TCTAAAAATTTGGTCAAACGTGCA 58.348 33.333 0.00 0.00 32.51 4.57
2698 4752 6.576551 TTCTAAAAATTTGGTCAAACGTGC 57.423 33.333 0.00 0.00 32.51 5.34
2810 4864 9.044150 CAAATTTGTGTATGTTTGACCAAGATT 57.956 29.630 10.15 0.00 34.38 2.40
2811 4865 8.420222 TCAAATTTGTGTATGTTTGACCAAGAT 58.580 29.630 17.47 0.00 36.11 2.40
2812 4866 7.776107 TCAAATTTGTGTATGTTTGACCAAGA 58.224 30.769 17.47 0.00 36.11 3.02
2818 4872 7.009999 GTGCAAGTCAAATTTGTGTATGTTTGA 59.990 33.333 17.47 0.00 38.01 2.69
2819 4873 7.118724 GTGCAAGTCAAATTTGTGTATGTTTG 58.881 34.615 17.47 12.40 33.91 2.93
2820 4874 6.815641 TGTGCAAGTCAAATTTGTGTATGTTT 59.184 30.769 17.47 1.59 0.00 2.83
2821 4875 6.336566 TGTGCAAGTCAAATTTGTGTATGTT 58.663 32.000 17.47 1.82 0.00 2.71
2822 4876 5.900425 TGTGCAAGTCAAATTTGTGTATGT 58.100 33.333 17.47 0.00 0.00 2.29
2823 4877 6.825284 TTGTGCAAGTCAAATTTGTGTATG 57.175 33.333 17.47 12.94 0.00 2.39
2824 4878 7.840342 TTTTGTGCAAGTCAAATTTGTGTAT 57.160 28.000 17.47 1.04 35.25 2.29
2825 4879 7.658179 TTTTTGTGCAAGTCAAATTTGTGTA 57.342 28.000 17.47 6.07 35.25 2.90
2826 4880 6.551385 TTTTTGTGCAAGTCAAATTTGTGT 57.449 29.167 17.47 3.85 35.25 3.72
2827 4881 6.408611 CGATTTTTGTGCAAGTCAAATTTGTG 59.591 34.615 17.47 10.05 35.25 3.33
2828 4882 6.312426 TCGATTTTTGTGCAAGTCAAATTTGT 59.688 30.769 17.47 0.00 35.25 2.83
2829 4883 6.703857 TCGATTTTTGTGCAAGTCAAATTTG 58.296 32.000 12.15 12.15 35.25 2.32
2830 4884 6.900568 TCGATTTTTGTGCAAGTCAAATTT 57.099 29.167 2.22 0.00 35.25 1.82
2831 4885 7.651304 TGTATCGATTTTTGTGCAAGTCAAATT 59.349 29.630 1.71 0.00 35.25 1.82
2832 4886 7.114811 GTGTATCGATTTTTGTGCAAGTCAAAT 59.885 33.333 1.71 0.00 35.25 2.32
2833 4887 6.416455 GTGTATCGATTTTTGTGCAAGTCAAA 59.584 34.615 1.71 0.00 33.76 2.69
2834 4888 5.912396 GTGTATCGATTTTTGTGCAAGTCAA 59.088 36.000 1.71 0.00 0.00 3.18
2835 4889 5.448438 GTGTATCGATTTTTGTGCAAGTCA 58.552 37.500 1.71 0.00 0.00 3.41
2836 4890 4.851558 GGTGTATCGATTTTTGTGCAAGTC 59.148 41.667 1.71 0.00 0.00 3.01
2837 4891 4.518970 AGGTGTATCGATTTTTGTGCAAGT 59.481 37.500 1.71 0.00 0.00 3.16
2838 4892 5.046910 AGGTGTATCGATTTTTGTGCAAG 57.953 39.130 1.71 0.00 0.00 4.01
2839 4893 5.446143 AAGGTGTATCGATTTTTGTGCAA 57.554 34.783 1.71 0.00 0.00 4.08
2840 4894 6.751514 ATAAGGTGTATCGATTTTTGTGCA 57.248 33.333 1.71 0.00 0.00 4.57
2841 4895 9.382244 GAATATAAGGTGTATCGATTTTTGTGC 57.618 33.333 1.71 0.00 0.00 4.57
2847 4901 9.490379 GTTCCAGAATATAAGGTGTATCGATTT 57.510 33.333 1.71 0.00 0.00 2.17
2848 4902 7.813148 CGTTCCAGAATATAAGGTGTATCGATT 59.187 37.037 1.71 0.00 0.00 3.34
2849 4903 7.313646 CGTTCCAGAATATAAGGTGTATCGAT 58.686 38.462 2.16 2.16 0.00 3.59
2850 4904 6.294342 CCGTTCCAGAATATAAGGTGTATCGA 60.294 42.308 0.00 0.00 0.00 3.59
2851 4905 5.862323 CCGTTCCAGAATATAAGGTGTATCG 59.138 44.000 0.00 0.00 0.00 2.92
2852 4906 6.989659 TCCGTTCCAGAATATAAGGTGTATC 58.010 40.000 0.00 0.00 0.00 2.24
2853 4907 6.781014 TCTCCGTTCCAGAATATAAGGTGTAT 59.219 38.462 0.00 0.00 0.00 2.29
2854 4908 6.131264 TCTCCGTTCCAGAATATAAGGTGTA 58.869 40.000 0.00 0.00 0.00 2.90
2855 4909 4.960469 TCTCCGTTCCAGAATATAAGGTGT 59.040 41.667 0.00 0.00 0.00 4.16
2856 4910 5.302059 TCTCTCCGTTCCAGAATATAAGGTG 59.698 44.000 0.00 0.00 0.00 4.00
2857 4911 5.455872 TCTCTCCGTTCCAGAATATAAGGT 58.544 41.667 0.00 0.00 0.00 3.50
2858 4912 5.536916 ACTCTCTCCGTTCCAGAATATAAGG 59.463 44.000 0.00 0.00 0.00 2.69
2859 4913 6.642707 ACTCTCTCCGTTCCAGAATATAAG 57.357 41.667 0.00 0.00 0.00 1.73
2860 4914 8.529424 TTTACTCTCTCCGTTCCAGAATATAA 57.471 34.615 0.00 0.00 0.00 0.98
2861 4915 7.997223 TCTTTACTCTCTCCGTTCCAGAATATA 59.003 37.037 0.00 0.00 0.00 0.86
2862 4916 6.834451 TCTTTACTCTCTCCGTTCCAGAATAT 59.166 38.462 0.00 0.00 0.00 1.28
2863 4917 6.185511 TCTTTACTCTCTCCGTTCCAGAATA 58.814 40.000 0.00 0.00 0.00 1.75
2864 4918 5.017490 TCTTTACTCTCTCCGTTCCAGAAT 58.983 41.667 0.00 0.00 0.00 2.40
2865 4919 4.404640 TCTTTACTCTCTCCGTTCCAGAA 58.595 43.478 0.00 0.00 0.00 3.02
2866 4920 4.030314 TCTTTACTCTCTCCGTTCCAGA 57.970 45.455 0.00 0.00 0.00 3.86
2867 4921 4.993029 ATCTTTACTCTCTCCGTTCCAG 57.007 45.455 0.00 0.00 0.00 3.86
2868 4922 5.740290 AAATCTTTACTCTCTCCGTTCCA 57.260 39.130 0.00 0.00 0.00 3.53
2869 4923 6.628185 TGTAAATCTTTACTCTCTCCGTTCC 58.372 40.000 12.61 0.00 42.61 3.62
2870 4924 8.705048 ATTGTAAATCTTTACTCTCTCCGTTC 57.295 34.615 12.61 0.00 42.61 3.95
2943 5252 6.040504 TGCTGGTATAACTTCTATCACGATGT 59.959 38.462 0.00 0.00 0.00 3.06
2950 5259 8.286097 GCTGAAATTGCTGGTATAACTTCTATC 58.714 37.037 0.00 0.00 0.00 2.08
2954 5263 6.194796 TGCTGAAATTGCTGGTATAACTTC 57.805 37.500 0.00 0.00 0.00 3.01
3004 5313 1.533625 TGCAGAACCATACAAGGCAC 58.466 50.000 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.