Multiple sequence alignment - TraesCS3D01G481000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G481000 chr3D 100.000 4542 0 0 1 4542 579397252 579392711 0.000000e+00 8388.0
1 TraesCS3D01G481000 chr3D 91.814 2822 176 15 866 3639 579424078 579421264 0.000000e+00 3880.0
2 TraesCS3D01G481000 chr3D 91.898 1407 110 4 995 2400 579585221 579586624 0.000000e+00 1964.0
3 TraesCS3D01G481000 chr3D 89.501 981 82 9 2677 3639 579587107 579588084 0.000000e+00 1221.0
4 TraesCS3D01G481000 chr3D 95.430 744 34 0 3640 4383 579384699 579383956 0.000000e+00 1186.0
5 TraesCS3D01G481000 chr3D 97.531 162 4 0 4381 4542 198988441 198988602 1.240000e-70 278.0
6 TraesCS3D01G481000 chr3D 97.531 162 4 0 4381 4542 577213450 577213611 1.240000e-70 278.0
7 TraesCS3D01G481000 chr3D 79.104 134 11 6 2528 2644 579586698 579586831 4.870000e-10 76.8
8 TraesCS3D01G481000 chr3B 89.278 2882 203 35 841 3639 773761346 773758488 0.000000e+00 3513.0
9 TraesCS3D01G481000 chr3B 91.875 1317 104 2 995 2311 773898542 773899855 0.000000e+00 1836.0
10 TraesCS3D01G481000 chr3B 89.023 1075 85 14 2591 3639 773900088 773901155 0.000000e+00 1301.0
11 TraesCS3D01G481000 chr3B 92.170 447 22 8 402 838 773744262 773743819 1.790000e-173 619.0
12 TraesCS3D01G481000 chr3B 94.839 310 15 1 110 418 773744589 773744280 2.460000e-132 483.0
13 TraesCS3D01G481000 chr3B 84.375 288 20 7 730 992 773898222 773898509 4.510000e-65 259.0
14 TraesCS3D01G481000 chr3B 92.523 107 7 1 2295 2400 773899873 773899979 7.870000e-33 152.0
15 TraesCS3D01G481000 chr3B 90.110 91 5 3 1 91 773744740 773744826 1.030000e-21 115.0
16 TraesCS3D01G481000 chr3A 91.115 2431 121 36 3 2401 714592713 714590346 0.000000e+00 3205.0
17 TraesCS3D01G481000 chr3A 90.599 1319 118 6 995 2313 714643602 714644914 0.000000e+00 1744.0
18 TraesCS3D01G481000 chr3A 91.067 1265 71 15 2398 3639 714590321 714589076 0.000000e+00 1672.0
19 TraesCS3D01G481000 chr3A 89.806 981 79 12 2677 3639 714645540 714646517 0.000000e+00 1238.0
20 TraesCS3D01G481000 chr3A 87.030 1010 39 25 1 976 714626823 714627774 0.000000e+00 1055.0
21 TraesCS3D01G481000 chr3A 89.207 769 50 12 1859 2596 714627773 714628539 0.000000e+00 929.0
22 TraesCS3D01G481000 chr3A 90.909 154 12 1 841 992 714643416 714643569 5.960000e-49 206.0
23 TraesCS3D01G481000 chr3A 94.805 77 3 1 730 806 714643171 714643246 7.980000e-23 119.0
24 TraesCS3D01G481000 chrUn 92.667 750 46 5 3638 4383 414607234 414606490 0.000000e+00 1072.0
25 TraesCS3D01G481000 chr5D 92.771 747 45 5 3638 4380 212955102 212955843 0.000000e+00 1072.0
26 TraesCS3D01G481000 chr5D 92.637 747 46 5 3638 4380 213009410 213010151 0.000000e+00 1066.0
27 TraesCS3D01G481000 chr5D 92.503 747 47 5 3638 4380 212980726 212981467 0.000000e+00 1061.0
28 TraesCS3D01G481000 chr5D 92.016 739 54 2 3640 4378 189677342 189676609 0.000000e+00 1033.0
29 TraesCS3D01G481000 chr5D 98.765 162 2 0 4381 4542 78078808 78078969 5.750000e-74 289.0
30 TraesCS3D01G481000 chr4D 92.359 746 50 6 3640 4383 317966567 317965827 0.000000e+00 1055.0
31 TraesCS3D01G481000 chr4D 92.194 743 52 6 3639 4380 370951365 370952102 0.000000e+00 1046.0
32 TraesCS3D01G481000 chr4D 98.765 162 2 0 4381 4542 195711869 195712030 5.750000e-74 289.0
33 TraesCS3D01G481000 chr4D 96.914 162 5 0 4381 4542 195717829 195717990 5.790000e-69 272.0
34 TraesCS3D01G481000 chr2D 91.968 747 48 10 3640 4383 119049540 119048803 0.000000e+00 1037.0
35 TraesCS3D01G481000 chr2D 96.914 162 5 0 4381 4542 152206532 152206371 5.790000e-69 272.0
36 TraesCS3D01G481000 chr7D 98.171 164 3 0 4379 4542 552303252 552303415 2.070000e-73 287.0
37 TraesCS3D01G481000 chr7D 98.148 162 3 0 4381 4542 386481586 386481425 2.670000e-72 283.0
38 TraesCS3D01G481000 chr7D 96.914 162 5 0 4381 4542 386475259 386475098 5.790000e-69 272.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G481000 chr3D 579392711 579397252 4541 True 8388.000000 8388 100.000000 1 4542 1 chr3D.!!$R2 4541
1 TraesCS3D01G481000 chr3D 579421264 579424078 2814 True 3880.000000 3880 91.814000 866 3639 1 chr3D.!!$R3 2773
2 TraesCS3D01G481000 chr3D 579383956 579384699 743 True 1186.000000 1186 95.430000 3640 4383 1 chr3D.!!$R1 743
3 TraesCS3D01G481000 chr3D 579585221 579588084 2863 False 1087.266667 1964 86.834333 995 3639 3 chr3D.!!$F3 2644
4 TraesCS3D01G481000 chr3B 773758488 773761346 2858 True 3513.000000 3513 89.278000 841 3639 1 chr3B.!!$R1 2798
5 TraesCS3D01G481000 chr3B 773898222 773901155 2933 False 887.000000 1836 89.449000 730 3639 4 chr3B.!!$F2 2909
6 TraesCS3D01G481000 chr3B 773743819 773744589 770 True 551.000000 619 93.504500 110 838 2 chr3B.!!$R2 728
7 TraesCS3D01G481000 chr3A 714589076 714592713 3637 True 2438.500000 3205 91.091000 3 3639 2 chr3A.!!$R1 3636
8 TraesCS3D01G481000 chr3A 714626823 714628539 1716 False 992.000000 1055 88.118500 1 2596 2 chr3A.!!$F1 2595
9 TraesCS3D01G481000 chr3A 714643171 714646517 3346 False 826.750000 1744 91.529750 730 3639 4 chr3A.!!$F2 2909
10 TraesCS3D01G481000 chrUn 414606490 414607234 744 True 1072.000000 1072 92.667000 3638 4383 1 chrUn.!!$R1 745
11 TraesCS3D01G481000 chr5D 212955102 212955843 741 False 1072.000000 1072 92.771000 3638 4380 1 chr5D.!!$F2 742
12 TraesCS3D01G481000 chr5D 213009410 213010151 741 False 1066.000000 1066 92.637000 3638 4380 1 chr5D.!!$F4 742
13 TraesCS3D01G481000 chr5D 212980726 212981467 741 False 1061.000000 1061 92.503000 3638 4380 1 chr5D.!!$F3 742
14 TraesCS3D01G481000 chr5D 189676609 189677342 733 True 1033.000000 1033 92.016000 3640 4378 1 chr5D.!!$R1 738
15 TraesCS3D01G481000 chr4D 317965827 317966567 740 True 1055.000000 1055 92.359000 3640 4383 1 chr4D.!!$R1 743
16 TraesCS3D01G481000 chr4D 370951365 370952102 737 False 1046.000000 1046 92.194000 3639 4380 1 chr4D.!!$F3 741
17 TraesCS3D01G481000 chr2D 119048803 119049540 737 True 1037.000000 1037 91.968000 3640 4383 1 chr2D.!!$R1 743

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
448 487 1.767088 TCTGATTCATCCTCTGGCAGG 59.233 52.381 15.73 5.31 45.15 4.85 F
1578 1820 0.606673 GCAGGTTCTCTGGTGGGAAC 60.607 60.000 0.54 0.54 43.54 3.62 F
2967 4010 0.179018 GATAATGGGGGACTTGCGCT 60.179 55.000 9.73 0.00 0.00 5.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2008 2250 0.179032 TGCAGTTCTTCCTTTCGCCA 60.179 50.0 0.0 0.0 0.0 5.69 R
3213 4272 0.698238 TGTTGCCATGTAAGAGCCCT 59.302 50.0 0.0 0.0 0.0 5.19 R
4506 5583 0.035820 GGGTTACCTGTGAATCGCCA 60.036 55.0 0.0 0.0 0.0 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
448 487 1.767088 TCTGATTCATCCTCTGGCAGG 59.233 52.381 15.73 5.31 45.15 4.85
535 581 9.632638 ATTTGCAGAGGTAGATGTGTAAATTAT 57.367 29.630 0.00 0.00 36.02 1.28
567 613 9.543018 GTAAATGTGCAAATTAGTAGTGTTCTC 57.457 33.333 1.59 0.00 0.00 2.87
580 626 5.645497 AGTAGTGTTCTCTCATTTCCATTGC 59.355 40.000 0.00 0.00 0.00 3.56
600 646 2.662866 CGGGAGGTCTGACCATTAGTA 58.337 52.381 27.48 0.00 41.95 1.82
601 650 2.623889 CGGGAGGTCTGACCATTAGTAG 59.376 54.545 27.48 8.99 41.95 2.57
625 674 2.233676 TCCTCTGACAATATGCACGTGT 59.766 45.455 18.38 0.00 0.00 4.49
627 676 4.081917 TCCTCTGACAATATGCACGTGTAA 60.082 41.667 18.38 6.47 0.00 2.41
628 677 4.032900 CCTCTGACAATATGCACGTGTAAC 59.967 45.833 18.38 0.49 0.00 2.50
629 678 4.816392 TCTGACAATATGCACGTGTAACT 58.184 39.130 18.38 0.63 31.75 2.24
630 679 4.862574 TCTGACAATATGCACGTGTAACTC 59.137 41.667 18.38 0.00 31.75 3.01
631 680 4.561105 TGACAATATGCACGTGTAACTCA 58.439 39.130 18.38 6.33 31.75 3.41
633 682 5.290885 TGACAATATGCACGTGTAACTCATC 59.709 40.000 18.38 10.04 31.75 2.92
937 1145 5.846203 ACTGCAAGGTTAGTTTTCGTAGTA 58.154 37.500 0.00 0.00 39.30 1.82
938 1146 6.282930 ACTGCAAGGTTAGTTTTCGTAGTAA 58.717 36.000 0.00 0.00 39.30 2.24
1288 1530 2.787249 CTTCATCCGCGGTGCTTG 59.213 61.111 27.15 17.97 0.00 4.01
1308 1550 2.711542 GGTATGACCAACAACTCCAGG 58.288 52.381 0.00 0.00 38.42 4.45
1351 1593 1.750193 CCGCCACATACTTTGGATGT 58.250 50.000 0.00 0.00 38.05 3.06
1358 1600 5.336690 GCCACATACTTTGGATGTCAAACAT 60.337 40.000 0.00 0.00 42.43 2.71
1363 1605 9.859427 ACATACTTTGGATGTCAAACATAATTG 57.141 29.630 0.00 0.00 39.27 2.32
1398 1640 4.096382 TCTTCAGCCAAACTTCTCAACAAC 59.904 41.667 0.00 0.00 0.00 3.32
1401 1643 1.404035 GCCAAACTTCTCAACAACGGT 59.596 47.619 0.00 0.00 0.00 4.83
1405 1647 5.735070 GCCAAACTTCTCAACAACGGTAATT 60.735 40.000 0.00 0.00 0.00 1.40
1407 1649 6.198216 CCAAACTTCTCAACAACGGTAATTTG 59.802 38.462 0.00 0.00 0.00 2.32
1485 1727 2.440980 GTCCTTCCTGGCATGCCC 60.441 66.667 33.44 16.23 35.26 5.36
1556 1798 0.609406 GGCCCTGAAGACCCTTCAAC 60.609 60.000 10.19 3.99 0.00 3.18
1578 1820 0.606673 GCAGGTTCTCTGGTGGGAAC 60.607 60.000 0.54 0.54 43.54 3.62
2007 2249 4.590222 AGAGGCAATTTTTCTCATGGTTGT 59.410 37.500 0.00 0.00 0.00 3.32
2008 2250 5.070847 AGAGGCAATTTTTCTCATGGTTGTT 59.929 36.000 0.00 0.00 0.00 2.83
2475 2845 7.339466 AGAATCCTAACATGCTAAACCGAAAAT 59.661 33.333 0.00 0.00 0.00 1.82
2504 2882 7.963981 TGCTTTCAGTATTCAAACTATTCGAG 58.036 34.615 0.00 0.00 0.00 4.04
2587 3079 8.239998 TGTCAACGCATTAATATGTCAAAATGA 58.760 29.630 0.00 0.00 34.12 2.57
2651 3173 7.630082 TCCTGATGCAATTAACTAGGTTACTT 58.370 34.615 0.00 0.00 0.00 2.24
2779 3818 3.221771 ACCAGCAATTTCAGCAAGTGTA 58.778 40.909 0.00 0.00 32.75 2.90
2960 4003 2.695585 AGGAGACTGATAATGGGGGAC 58.304 52.381 0.00 0.00 41.13 4.46
2967 4010 0.179018 GATAATGGGGGACTTGCGCT 60.179 55.000 9.73 0.00 0.00 5.92
3050 4093 2.463876 GCTGCAACAAACAACTTCTCC 58.536 47.619 0.00 0.00 0.00 3.71
3069 4116 4.224147 TCTCCATGTCCAATTTACTCGGAA 59.776 41.667 0.00 0.00 0.00 4.30
3118 4165 8.709646 CAAGGTAAACATAAACTCTACAGTGTC 58.290 37.037 0.00 0.00 31.06 3.67
3122 4169 6.919775 AACATAAACTCTACAGTGTCTCCT 57.080 37.500 0.00 0.00 31.06 3.69
3141 4188 5.530915 TCTCCTTAATTGCACCGAAATATGG 59.469 40.000 0.00 0.00 0.00 2.74
3148 4207 7.920160 AATTGCACCGAAATATGGAAATTTT 57.080 28.000 0.00 0.00 29.46 1.82
3213 4272 4.155063 TCTTCCTGCTGCTATAATGCAA 57.845 40.909 0.00 0.00 42.83 4.08
3423 4489 3.876309 AGCCTTGACACCTTCCTTTTA 57.124 42.857 0.00 0.00 0.00 1.52
3539 4612 0.322816 AATGCTTCACTGGCCGACAT 60.323 50.000 0.00 0.00 0.00 3.06
3633 4707 8.571461 TTCATAGAGATCTGAAAACAAGCAAT 57.429 30.769 0.00 0.00 0.00 3.56
3682 4756 2.433446 CCAGACTTGCCTGCCTGT 59.567 61.111 0.00 0.00 32.97 4.00
4130 5205 6.099269 ACTTGTACTAGTTGTCTCCCTTCAAA 59.901 38.462 0.00 0.00 0.00 2.69
4148 5223 3.129871 CAAAATTGGTCGTTGTGGCATT 58.870 40.909 0.00 0.00 0.00 3.56
4177 5252 2.158549 GCCTAGCATTTGGGAAGAGGAT 60.159 50.000 0.00 0.00 0.00 3.24
4206 5281 5.717654 GCCTCTATAAATAGGACTAGCCACT 59.282 44.000 6.07 0.00 40.02 4.00
4211 5286 6.667558 ATAAATAGGACTAGCCACTACCAC 57.332 41.667 6.07 0.00 40.02 4.16
4311 5388 2.522705 TCAGGAGGCTATTCTTCCCCTA 59.477 50.000 0.00 0.00 0.00 3.53
4329 5406 7.718399 TCCCCTATACTAGTTCTTCCTTAGA 57.282 40.000 0.00 0.00 0.00 2.10
4386 5463 2.691409 ATTACACCACATCTGTCGGG 57.309 50.000 4.57 0.00 0.00 5.14
4387 5464 0.611200 TTACACCACATCTGTCGGGG 59.389 55.000 0.00 1.15 0.00 5.73
4388 5465 0.251877 TACACCACATCTGTCGGGGA 60.252 55.000 7.69 0.00 0.00 4.81
4389 5466 0.909610 ACACCACATCTGTCGGGGAT 60.910 55.000 7.69 0.00 0.00 3.85
4390 5467 1.119684 CACCACATCTGTCGGGGATA 58.880 55.000 0.00 0.00 0.00 2.59
4391 5468 1.694150 CACCACATCTGTCGGGGATAT 59.306 52.381 0.00 0.00 0.00 1.63
4392 5469 2.897326 CACCACATCTGTCGGGGATATA 59.103 50.000 0.00 0.00 0.00 0.86
4393 5470 2.897969 ACCACATCTGTCGGGGATATAC 59.102 50.000 0.00 0.00 0.00 1.47
4394 5471 2.233922 CCACATCTGTCGGGGATATACC 59.766 54.545 0.00 0.00 38.08 2.73
4408 5485 2.839162 TACCCCGCGGTATGACCC 60.839 66.667 26.12 0.00 42.18 4.46
4409 5486 3.675764 TACCCCGCGGTATGACCCA 62.676 63.158 26.12 0.00 42.18 4.51
4410 5487 4.235762 CCCCGCGGTATGACCCAG 62.236 72.222 26.12 4.67 33.75 4.45
4411 5488 4.910585 CCCGCGGTATGACCCAGC 62.911 72.222 26.12 0.00 33.75 4.85
4412 5489 4.910585 CCGCGGTATGACCCAGCC 62.911 72.222 19.50 0.00 33.75 4.85
4413 5490 4.155733 CGCGGTATGACCCAGCCA 62.156 66.667 0.00 0.00 33.75 4.75
4414 5491 2.203070 GCGGTATGACCCAGCCAG 60.203 66.667 0.00 0.00 33.75 4.85
4415 5492 2.731571 GCGGTATGACCCAGCCAGA 61.732 63.158 0.00 0.00 33.75 3.86
4416 5493 1.144057 CGGTATGACCCAGCCAGAC 59.856 63.158 0.00 0.00 33.75 3.51
4417 5494 1.330655 CGGTATGACCCAGCCAGACT 61.331 60.000 0.00 0.00 33.75 3.24
4418 5495 0.912486 GGTATGACCCAGCCAGACTT 59.088 55.000 0.00 0.00 30.04 3.01
4419 5496 1.407437 GGTATGACCCAGCCAGACTTG 60.407 57.143 0.00 0.00 30.04 3.16
4420 5497 4.647736 GGTATGACCCAGCCAGACTTGG 62.648 59.091 0.00 0.00 38.88 3.61
4421 5498 1.136329 ATGACCCAGCCAGACTTGGT 61.136 55.000 0.00 0.00 46.95 3.67
4422 5499 1.302832 GACCCAGCCAGACTTGGTG 60.303 63.158 0.00 0.00 44.36 4.17
4423 5500 1.768684 GACCCAGCCAGACTTGGTGA 61.769 60.000 7.28 0.00 44.36 4.02
4424 5501 1.302832 CCCAGCCAGACTTGGTGAC 60.303 63.158 7.28 0.00 46.80 3.67
4425 5502 1.757306 CCAGCCAGACTTGGTGACT 59.243 57.895 7.28 0.00 46.80 3.41
4426 5503 0.321122 CCAGCCAGACTTGGTGACTC 60.321 60.000 7.28 0.00 46.80 3.36
4427 5504 0.394192 CAGCCAGACTTGGTGACTCA 59.606 55.000 0.00 0.00 46.80 3.41
4428 5505 0.394565 AGCCAGACTTGGTGACTCAC 59.605 55.000 0.00 0.00 46.80 3.51
4446 5523 4.126908 CAGAGACCTGGCCAGACT 57.873 61.111 34.91 29.11 36.77 3.24
4447 5524 2.370718 CAGAGACCTGGCCAGACTT 58.629 57.895 34.91 17.62 36.77 3.01
4448 5525 0.036577 CAGAGACCTGGCCAGACTTG 60.037 60.000 34.91 23.37 36.77 3.16
4457 5534 4.268687 CCAGACTTGGCGACTCAC 57.731 61.111 0.00 0.00 37.73 3.51
4458 5535 1.374758 CCAGACTTGGCGACTCACC 60.375 63.158 0.00 0.00 37.73 4.02
4459 5536 1.367471 CAGACTTGGCGACTCACCA 59.633 57.895 0.00 0.00 34.65 4.17
4460 5537 0.668706 CAGACTTGGCGACTCACCAG 60.669 60.000 0.00 0.00 38.73 4.00
4461 5538 0.827925 AGACTTGGCGACTCACCAGA 60.828 55.000 0.00 0.00 38.73 3.86
4463 5540 0.827925 ACTTGGCGACTCACCAGAGA 60.828 55.000 0.00 0.00 44.98 3.10
4464 5541 0.389166 CTTGGCGACTCACCAGAGAC 60.389 60.000 0.00 0.00 44.98 3.36
4465 5542 1.816863 TTGGCGACTCACCAGAGACC 61.817 60.000 0.00 0.00 44.98 3.85
4466 5543 1.979693 GGCGACTCACCAGAGACCT 60.980 63.158 0.00 0.00 44.98 3.85
4467 5544 1.214062 GCGACTCACCAGAGACCTG 59.786 63.158 0.00 0.00 44.98 4.00
4475 5552 2.583520 CAGAGACCTGGCTGGAGC 59.416 66.667 18.12 8.51 39.71 4.70
4476 5553 1.988956 CAGAGACCTGGCTGGAGCT 60.989 63.158 18.12 13.11 41.70 4.09
4477 5554 1.229464 AGAGACCTGGCTGGAGCTT 60.229 57.895 18.12 0.00 41.70 3.74
4478 5555 1.078567 GAGACCTGGCTGGAGCTTG 60.079 63.158 18.12 0.00 41.70 4.01
4479 5556 2.045536 GACCTGGCTGGAGCTTGG 60.046 66.667 18.12 4.06 41.70 3.61
4480 5557 4.357279 ACCTGGCTGGAGCTTGGC 62.357 66.667 18.12 0.00 41.70 4.52
4482 5559 4.399395 CTGGCTGGAGCTTGGCGA 62.399 66.667 0.00 0.00 41.70 5.54
4483 5560 4.704833 TGGCTGGAGCTTGGCGAC 62.705 66.667 0.00 0.00 41.70 5.19
4484 5561 4.400961 GGCTGGAGCTTGGCGACT 62.401 66.667 0.00 0.00 41.70 4.18
4485 5562 2.817396 GCTGGAGCTTGGCGACTC 60.817 66.667 0.00 0.00 38.21 3.36
4486 5563 2.659016 CTGGAGCTTGGCGACTCA 59.341 61.111 0.00 0.00 34.48 3.41
4487 5564 1.739562 CTGGAGCTTGGCGACTCAC 60.740 63.158 0.00 0.00 34.48 3.51
4488 5565 2.164865 CTGGAGCTTGGCGACTCACT 62.165 60.000 0.00 0.00 34.48 3.41
4489 5566 1.739562 GGAGCTTGGCGACTCACTG 60.740 63.158 0.00 0.00 34.48 3.66
4490 5567 1.739562 GAGCTTGGCGACTCACTGG 60.740 63.158 0.00 0.00 32.98 4.00
4491 5568 2.031163 GCTTGGCGACTCACTGGT 59.969 61.111 0.00 0.00 0.00 4.00
4492 5569 2.320587 GCTTGGCGACTCACTGGTG 61.321 63.158 0.00 0.00 0.00 4.17
4493 5570 1.367471 CTTGGCGACTCACTGGTGA 59.633 57.895 3.34 3.34 38.06 4.02
4494 5571 0.036952 CTTGGCGACTCACTGGTGAT 60.037 55.000 3.80 0.00 39.13 3.06
4495 5572 0.037326 TTGGCGACTCACTGGTGATC 60.037 55.000 3.80 4.14 39.13 2.92
4496 5573 1.153549 GGCGACTCACTGGTGATCC 60.154 63.158 3.80 0.99 39.13 3.36
4497 5574 1.517257 GCGACTCACTGGTGATCCG 60.517 63.158 15.29 15.29 39.13 4.18
4498 5575 1.517257 CGACTCACTGGTGATCCGC 60.517 63.158 3.80 0.00 39.13 5.54
4499 5576 1.153549 GACTCACTGGTGATCCGCC 60.154 63.158 3.80 0.00 39.13 6.13
4500 5577 2.187946 CTCACTGGTGATCCGCCC 59.812 66.667 3.80 0.00 39.13 6.13
4501 5578 3.723235 CTCACTGGTGATCCGCCCG 62.723 68.421 3.80 0.00 39.13 6.13
4502 5579 3.770040 CACTGGTGATCCGCCCGA 61.770 66.667 0.00 0.00 36.30 5.14
4503 5580 3.000819 ACTGGTGATCCGCCCGAA 61.001 61.111 0.00 0.00 36.30 4.30
4504 5581 2.511600 CTGGTGATCCGCCCGAAC 60.512 66.667 0.00 0.00 36.30 3.95
4505 5582 3.309436 CTGGTGATCCGCCCGAACA 62.309 63.158 0.00 0.00 36.30 3.18
4506 5583 2.189521 GGTGATCCGCCCGAACAT 59.810 61.111 0.00 0.00 0.00 2.71
4507 5584 2.180204 GGTGATCCGCCCGAACATG 61.180 63.158 0.00 0.00 0.00 3.21
4508 5585 2.180204 GTGATCCGCCCGAACATGG 61.180 63.158 0.00 0.00 0.00 3.66
4509 5586 3.279875 GATCCGCCCGAACATGGC 61.280 66.667 0.00 0.00 45.70 4.40
4514 5591 2.715624 GCCCGAACATGGCGATTC 59.284 61.111 11.20 0.00 39.48 2.52
4515 5592 2.112198 GCCCGAACATGGCGATTCA 61.112 57.895 11.20 0.00 39.48 2.57
4516 5593 1.721487 CCCGAACATGGCGATTCAC 59.279 57.895 11.20 0.00 0.00 3.18
4517 5594 1.024046 CCCGAACATGGCGATTCACA 61.024 55.000 11.20 0.00 0.00 3.58
4518 5595 0.374758 CCGAACATGGCGATTCACAG 59.625 55.000 11.20 0.00 0.00 3.66
4519 5596 0.374758 CGAACATGGCGATTCACAGG 59.625 55.000 4.45 0.00 0.00 4.00
4520 5597 1.453155 GAACATGGCGATTCACAGGT 58.547 50.000 0.00 0.00 32.40 4.00
4521 5598 2.627945 GAACATGGCGATTCACAGGTA 58.372 47.619 0.00 0.00 30.69 3.08
4522 5599 2.779755 ACATGGCGATTCACAGGTAA 57.220 45.000 0.00 0.00 28.87 2.85
4523 5600 2.356135 ACATGGCGATTCACAGGTAAC 58.644 47.619 0.00 0.00 28.87 2.50
4524 5601 1.670811 CATGGCGATTCACAGGTAACC 59.329 52.381 0.00 0.00 37.17 2.85
4525 5602 0.035820 TGGCGATTCACAGGTAACCC 60.036 55.000 0.00 0.00 37.17 4.11
4526 5603 1.087771 GGCGATTCACAGGTAACCCG 61.088 60.000 0.00 0.00 35.12 5.28
4527 5604 1.702491 GCGATTCACAGGTAACCCGC 61.702 60.000 0.00 0.00 35.12 6.13
4528 5605 1.087771 CGATTCACAGGTAACCCGCC 61.088 60.000 0.00 0.00 35.12 6.13
4529 5606 0.252197 GATTCACAGGTAACCCGCCT 59.748 55.000 0.00 0.00 36.66 5.52
4534 5611 2.203877 AGGTAACCCGCCTGGACA 60.204 61.111 0.00 0.00 37.49 4.02
4535 5612 1.615424 AGGTAACCCGCCTGGACAT 60.615 57.895 0.00 0.00 37.49 3.06
4536 5613 1.205460 AGGTAACCCGCCTGGACATT 61.205 55.000 0.00 0.00 37.49 2.71
4537 5614 1.029947 GGTAACCCGCCTGGACATTG 61.030 60.000 0.00 0.00 37.49 2.82
4538 5615 0.322187 GTAACCCGCCTGGACATTGT 60.322 55.000 0.00 0.00 37.49 2.71
4539 5616 0.322098 TAACCCGCCTGGACATTGTG 60.322 55.000 0.00 0.00 37.49 3.33
4540 5617 2.063015 AACCCGCCTGGACATTGTGA 62.063 55.000 0.00 0.00 37.49 3.58
4541 5618 2.040544 CCCGCCTGGACATTGTGAC 61.041 63.158 0.00 0.00 37.49 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 9.650539 GCTGATTATGTTATGTATCTCTGATGT 57.349 33.333 0.00 0.00 0.00 3.06
46 47 9.082313 TGAGCTGATTATGTTATGTATCTCTGA 57.918 33.333 0.00 0.00 0.00 3.27
82 83 1.985159 TCACTATGGAAGCCAAGGTGT 59.015 47.619 16.08 2.02 39.33 4.16
83 84 2.787473 TCACTATGGAAGCCAAGGTG 57.213 50.000 12.67 12.67 39.51 4.00
448 487 4.070716 CCAAGATCAGAGGTTATGGATGC 58.929 47.826 0.00 0.00 0.00 3.91
506 545 7.843490 TTACACATCTACCTCTGCAAATAAC 57.157 36.000 0.00 0.00 0.00 1.89
535 581 9.509956 ACTACTAATTTGCACATTTACCACTTA 57.490 29.630 2.94 0.00 0.00 2.24
536 582 8.296713 CACTACTAATTTGCACATTTACCACTT 58.703 33.333 2.94 0.00 0.00 3.16
567 613 1.027357 CCTCCCGCAATGGAAATGAG 58.973 55.000 0.00 0.00 42.00 2.90
580 626 1.486211 ACTAATGGTCAGACCTCCCG 58.514 55.000 20.82 9.16 39.58 5.14
621 670 3.058983 TGCTGCAAAAGATGAGTTACACG 60.059 43.478 0.00 0.00 0.00 4.49
622 671 4.488126 TGCTGCAAAAGATGAGTTACAC 57.512 40.909 0.00 0.00 0.00 2.90
625 674 4.100707 GCATGCTGCAAAAGATGAGTTA 57.899 40.909 11.37 0.00 44.26 2.24
627 676 2.649331 GCATGCTGCAAAAGATGAGT 57.351 45.000 11.37 0.00 44.26 3.41
663 733 9.888878 CGCATATTTTTAGATCATCAACTTGAT 57.111 29.630 0.00 0.00 37.65 2.57
834 1010 2.537143 AGTGTGAACGGAGGGATACTT 58.463 47.619 0.00 0.00 0.00 2.24
838 1014 1.002087 GTGAAGTGTGAACGGAGGGAT 59.998 52.381 0.00 0.00 0.00 3.85
839 1015 0.391597 GTGAAGTGTGAACGGAGGGA 59.608 55.000 0.00 0.00 0.00 4.20
898 1106 3.826524 TGCAGTTGAAATAGGTGAACCA 58.173 40.909 1.62 0.00 38.89 3.67
937 1145 7.506938 TGGAGAAGATTGAGGAAAATTCAGTTT 59.493 33.333 0.00 0.00 0.00 2.66
938 1146 7.006509 TGGAGAAGATTGAGGAAAATTCAGTT 58.993 34.615 0.00 0.00 0.00 3.16
1288 1530 2.711542 CCTGGAGTTGTTGGTCATACC 58.288 52.381 0.00 0.00 39.22 2.73
1305 1547 2.223572 GGTTTCAGACAACACAAGCCTG 60.224 50.000 0.00 0.00 0.00 4.85
1308 1550 3.502191 TTGGTTTCAGACAACACAAGC 57.498 42.857 0.00 0.00 0.00 4.01
1351 1593 3.235157 GCTGCCAGCAATTATGTTTGA 57.765 42.857 12.82 0.00 41.89 2.69
1363 1605 1.874562 CTGAAGAGTTGCTGCCAGC 59.125 57.895 10.45 10.45 42.82 4.85
1398 1640 8.141909 TCTGATGATAAGACTACCAAATTACCG 58.858 37.037 0.00 0.00 0.00 4.02
1405 1647 6.686378 GCACCATCTGATGATAAGACTACCAA 60.686 42.308 18.92 0.00 0.00 3.67
1407 1649 5.233988 GCACCATCTGATGATAAGACTACC 58.766 45.833 18.92 0.00 0.00 3.18
1556 1798 1.002868 CCACCAGAGAACCTGCCTG 60.003 63.158 0.00 0.00 41.57 4.85
1578 1820 0.531200 GTAGGGGAGTGTCAAGGTCG 59.469 60.000 0.00 0.00 0.00 4.79
1653 1895 2.038557 GCCCACGTTGGAGGATACATAT 59.961 50.000 10.41 0.00 40.96 1.78
2007 2249 0.951558 GCAGTTCTTCCTTTCGCCAA 59.048 50.000 0.00 0.00 0.00 4.52
2008 2250 0.179032 TGCAGTTCTTCCTTTCGCCA 60.179 50.000 0.00 0.00 0.00 5.69
2504 2882 7.201591 GCAACATCATGGAGATAGCACATATAC 60.202 40.741 0.00 0.00 34.43 1.47
2579 3071 6.367374 TCACTACCTGTACCATCATTTTGA 57.633 37.500 0.00 0.00 0.00 2.69
2587 3079 1.273609 TGGGCTCACTACCTGTACCAT 60.274 52.381 0.00 0.00 0.00 3.55
2693 3732 7.062749 AGGAACGATGCTATGAGGTTTAATA 57.937 36.000 0.00 0.00 0.00 0.98
2779 3818 5.048224 GCATGCCAATAGAAGTATCAGCAAT 60.048 40.000 6.36 0.00 32.94 3.56
2941 3984 2.695585 AGTCCCCCATTATCAGTCTCC 58.304 52.381 0.00 0.00 0.00 3.71
2960 4003 2.349886 GAGTCCATCACTAAAGCGCAAG 59.650 50.000 11.47 6.52 34.41 4.01
2967 4010 3.024547 CCTCTCCGAGTCCATCACTAAA 58.975 50.000 0.00 0.00 34.41 1.85
3050 4093 5.640732 CCTTTTCCGAGTAAATTGGACATG 58.359 41.667 0.00 0.00 41.61 3.21
3069 4116 1.069596 CTTTGCCAAAGCCGCCTTT 59.930 52.632 3.91 0.00 41.86 3.11
3118 4165 5.530915 TCCATATTTCGGTGCAATTAAGGAG 59.469 40.000 0.00 0.00 0.00 3.69
3122 4169 9.442047 AAAATTTCCATATTTCGGTGCAATTAA 57.558 25.926 0.00 0.00 0.00 1.40
3141 4188 9.906111 GTTCAGTTTTGAATCACAGAAAATTTC 57.094 29.630 0.00 0.00 44.62 2.17
3213 4272 0.698238 TGTTGCCATGTAAGAGCCCT 59.302 50.000 0.00 0.00 0.00 5.19
3246 4305 4.249661 CAGAACCTCTACTCAGCCTTTTC 58.750 47.826 0.00 0.00 0.00 2.29
3509 4582 5.594926 CCAGTGAAGCATTGACTTCTTTTT 58.405 37.500 16.43 3.65 40.50 1.94
3539 4612 9.866655 AGCCACTCCTTTTATTATATTGAATCA 57.133 29.630 0.00 0.00 0.00 2.57
3615 4689 9.768662 ACAAAAATATTGCTTGTTTTCAGATCT 57.231 25.926 9.38 0.00 28.99 2.75
3633 4707 1.444836 CCAGGACGCCGACAAAAATA 58.555 50.000 0.00 0.00 0.00 1.40
3987 5061 1.202371 GGTCTCGTTGCACCGATATGA 60.202 52.381 6.86 0.00 36.08 2.15
4130 5205 1.272212 GGAATGCCACAACGACCAATT 59.728 47.619 0.00 0.00 0.00 2.32
4148 5223 0.107214 CAAATGCTAGGCGGGAAGGA 60.107 55.000 0.00 0.00 0.00 3.36
4177 5252 5.355670 AGTCCTATTTATAGAGGCCCTGA 57.644 43.478 0.00 0.00 32.57 3.86
4206 5281 3.450904 AGATTAGTTGCCTCCTGTGGTA 58.549 45.455 0.00 0.00 0.00 3.25
4211 5286 3.274288 GTCCAAGATTAGTTGCCTCCTG 58.726 50.000 0.00 0.00 0.00 3.86
4223 5298 2.434336 TCCGAATGATCCGTCCAAGATT 59.566 45.455 0.00 0.00 0.00 2.40
4300 5377 7.606581 AGGAAGAACTAGTATAGGGGAAGAAT 58.393 38.462 0.00 0.00 44.97 2.40
4311 5388 7.562088 CCTCTTGGTCTAAGGAAGAACTAGTAT 59.438 40.741 0.00 0.00 43.07 2.12
4329 5406 0.251341 GTGGTGGATTGCCTCTTGGT 60.251 55.000 0.00 0.00 35.27 3.67
4393 5470 4.235762 CTGGGTCATACCGCGGGG 62.236 72.222 31.76 18.33 39.83 5.73
4394 5471 4.910585 GCTGGGTCATACCGCGGG 62.911 72.222 31.76 12.37 39.83 6.13
4395 5472 4.910585 GGCTGGGTCATACCGCGG 62.911 72.222 26.86 26.86 39.83 6.46
4396 5473 4.155733 TGGCTGGGTCATACCGCG 62.156 66.667 0.00 0.00 39.83 6.46
4397 5474 2.203070 CTGGCTGGGTCATACCGC 60.203 66.667 0.00 0.00 39.83 5.68
4398 5475 1.144057 GTCTGGCTGGGTCATACCG 59.856 63.158 0.00 0.00 39.83 4.02
4399 5476 0.912486 AAGTCTGGCTGGGTCATACC 59.088 55.000 0.00 0.00 37.60 2.73
4400 5477 1.407437 CCAAGTCTGGCTGGGTCATAC 60.407 57.143 0.00 0.00 35.39 2.39
4401 5478 0.911769 CCAAGTCTGGCTGGGTCATA 59.088 55.000 0.00 0.00 35.39 2.15
4402 5479 1.687612 CCAAGTCTGGCTGGGTCAT 59.312 57.895 0.00 0.00 35.39 3.06
4403 5480 3.160585 CCAAGTCTGGCTGGGTCA 58.839 61.111 0.00 0.00 35.39 4.02
4429 5506 0.036577 CAAGTCTGGCCAGGTCTCTG 60.037 60.000 32.23 22.23 40.59 3.35
4430 5507 1.197430 CCAAGTCTGGCCAGGTCTCT 61.197 60.000 32.23 20.74 35.39 3.10
4431 5508 1.298014 CCAAGTCTGGCCAGGTCTC 59.702 63.158 32.23 18.98 35.39 3.36
4432 5509 3.488423 CCAAGTCTGGCCAGGTCT 58.512 61.111 32.23 25.41 35.39 3.85
4440 5517 1.374758 GGTGAGTCGCCAAGTCTGG 60.375 63.158 18.11 0.00 46.65 3.86
4441 5518 0.668706 CTGGTGAGTCGCCAAGTCTG 60.669 60.000 25.09 10.38 43.83 3.51
4442 5519 0.827925 TCTGGTGAGTCGCCAAGTCT 60.828 55.000 25.09 0.00 43.83 3.24
4443 5520 0.389166 CTCTGGTGAGTCGCCAAGTC 60.389 60.000 25.09 0.00 43.83 3.01
4444 5521 0.827925 TCTCTGGTGAGTCGCCAAGT 60.828 55.000 25.09 0.00 43.83 3.16
4445 5522 0.389166 GTCTCTGGTGAGTCGCCAAG 60.389 60.000 25.09 22.19 43.83 3.61
4446 5523 1.666011 GTCTCTGGTGAGTCGCCAA 59.334 57.895 25.09 15.09 43.83 4.52
4447 5524 2.276116 GGTCTCTGGTGAGTCGCCA 61.276 63.158 23.75 23.75 42.15 5.69
4448 5525 1.979693 AGGTCTCTGGTGAGTCGCC 60.980 63.158 16.21 16.21 40.98 5.54
4449 5526 1.214062 CAGGTCTCTGGTGAGTCGC 59.786 63.158 0.00 0.00 40.98 5.19
4458 5535 1.551908 AAGCTCCAGCCAGGTCTCTG 61.552 60.000 0.00 0.00 43.38 3.35
4459 5536 1.229464 AAGCTCCAGCCAGGTCTCT 60.229 57.895 0.00 0.00 43.38 3.10
4460 5537 1.078567 CAAGCTCCAGCCAGGTCTC 60.079 63.158 0.00 0.00 43.38 3.36
4461 5538 2.600729 CCAAGCTCCAGCCAGGTCT 61.601 63.158 0.00 0.00 43.38 3.85
4462 5539 2.045536 CCAAGCTCCAGCCAGGTC 60.046 66.667 0.00 0.00 43.38 3.85
4463 5540 4.357279 GCCAAGCTCCAGCCAGGT 62.357 66.667 8.28 0.00 43.38 4.00
4465 5542 4.399395 TCGCCAAGCTCCAGCCAG 62.399 66.667 0.00 0.00 43.38 4.85
4466 5543 4.704833 GTCGCCAAGCTCCAGCCA 62.705 66.667 0.00 0.00 43.38 4.75
4467 5544 4.400961 AGTCGCCAAGCTCCAGCC 62.401 66.667 0.00 0.00 43.38 4.85
4468 5545 2.817396 GAGTCGCCAAGCTCCAGC 60.817 66.667 0.00 0.00 42.49 4.85
4469 5546 1.739562 GTGAGTCGCCAAGCTCCAG 60.740 63.158 0.00 0.00 0.00 3.86
4470 5547 2.210013 AGTGAGTCGCCAAGCTCCA 61.210 57.895 0.00 0.00 0.00 3.86
4471 5548 1.739562 CAGTGAGTCGCCAAGCTCC 60.740 63.158 0.00 0.00 0.00 4.70
4472 5549 1.739562 CCAGTGAGTCGCCAAGCTC 60.740 63.158 0.00 0.00 0.00 4.09
4473 5550 2.345244 CCAGTGAGTCGCCAAGCT 59.655 61.111 0.00 0.00 0.00 3.74
4474 5551 2.031163 ACCAGTGAGTCGCCAAGC 59.969 61.111 0.00 0.00 0.00 4.01
4475 5552 0.036952 ATCACCAGTGAGTCGCCAAG 60.037 55.000 6.63 0.00 43.61 3.61
4476 5553 0.037326 GATCACCAGTGAGTCGCCAA 60.037 55.000 6.63 0.00 43.61 4.52
4477 5554 1.591703 GATCACCAGTGAGTCGCCA 59.408 57.895 6.63 0.00 43.61 5.69
4478 5555 1.153549 GGATCACCAGTGAGTCGCC 60.154 63.158 6.63 2.03 43.61 5.54
4479 5556 1.517257 CGGATCACCAGTGAGTCGC 60.517 63.158 6.63 0.00 43.61 5.19
4480 5557 1.517257 GCGGATCACCAGTGAGTCG 60.517 63.158 16.26 16.26 43.61 4.18
4481 5558 1.153549 GGCGGATCACCAGTGAGTC 60.154 63.158 6.63 4.59 43.61 3.36
4482 5559 2.660064 GGGCGGATCACCAGTGAGT 61.660 63.158 6.63 0.00 43.61 3.41
4483 5560 2.187946 GGGCGGATCACCAGTGAG 59.812 66.667 6.63 0.00 43.61 3.51
4484 5561 3.770040 CGGGCGGATCACCAGTGA 61.770 66.667 2.42 2.42 44.59 3.41
4485 5562 3.309436 TTCGGGCGGATCACCAGTG 62.309 63.158 6.37 0.00 35.59 3.66
4486 5563 3.000819 TTCGGGCGGATCACCAGT 61.001 61.111 6.37 0.00 35.59 4.00
4487 5564 2.511600 GTTCGGGCGGATCACCAG 60.512 66.667 6.37 2.52 35.59 4.00
4488 5565 2.665089 ATGTTCGGGCGGATCACCA 61.665 57.895 7.83 0.00 35.59 4.17
4489 5566 2.180204 CATGTTCGGGCGGATCACC 61.180 63.158 7.83 0.00 0.00 4.02
4490 5567 2.180204 CCATGTTCGGGCGGATCAC 61.180 63.158 7.83 0.00 0.00 3.06
4491 5568 2.189257 CCATGTTCGGGCGGATCA 59.811 61.111 8.07 8.07 0.00 2.92
4492 5569 3.279875 GCCATGTTCGGGCGGATC 61.280 66.667 0.00 0.00 42.39 3.36
4498 5575 1.024046 TGTGAATCGCCATGTTCGGG 61.024 55.000 5.03 0.00 0.00 5.14
4499 5576 0.374758 CTGTGAATCGCCATGTTCGG 59.625 55.000 5.03 0.00 0.00 4.30
4500 5577 0.374758 CCTGTGAATCGCCATGTTCG 59.625 55.000 0.00 0.00 0.00 3.95
4501 5578 1.453155 ACCTGTGAATCGCCATGTTC 58.547 50.000 0.00 0.00 0.00 3.18
4502 5579 2.747446 GTTACCTGTGAATCGCCATGTT 59.253 45.455 0.00 0.00 0.00 2.71
4503 5580 2.356135 GTTACCTGTGAATCGCCATGT 58.644 47.619 0.00 0.00 0.00 3.21
4504 5581 1.670811 GGTTACCTGTGAATCGCCATG 59.329 52.381 0.00 0.00 0.00 3.66
4505 5582 1.408266 GGGTTACCTGTGAATCGCCAT 60.408 52.381 0.00 0.00 0.00 4.40
4506 5583 0.035820 GGGTTACCTGTGAATCGCCA 60.036 55.000 0.00 0.00 0.00 5.69
4507 5584 1.087771 CGGGTTACCTGTGAATCGCC 61.088 60.000 1.23 0.00 33.28 5.54
4508 5585 1.702491 GCGGGTTACCTGTGAATCGC 61.702 60.000 12.29 7.60 35.34 4.58
4509 5586 1.087771 GGCGGGTTACCTGTGAATCG 61.088 60.000 12.29 0.81 31.34 3.34
4510 5587 0.252197 AGGCGGGTTACCTGTGAATC 59.748 55.000 12.29 0.00 35.72 2.52
4511 5588 2.383608 AGGCGGGTTACCTGTGAAT 58.616 52.632 12.29 0.00 35.72 2.57
4512 5589 3.894832 AGGCGGGTTACCTGTGAA 58.105 55.556 12.29 0.00 35.72 3.18
4517 5594 1.205460 AATGTCCAGGCGGGTTACCT 61.205 55.000 2.94 0.00 38.35 3.08
4518 5595 1.029947 CAATGTCCAGGCGGGTTACC 61.030 60.000 2.94 0.00 38.11 2.85
4519 5596 0.322187 ACAATGTCCAGGCGGGTTAC 60.322 55.000 2.94 0.00 38.11 2.50
4520 5597 0.322098 CACAATGTCCAGGCGGGTTA 60.322 55.000 2.94 0.00 38.11 2.85
4521 5598 1.603455 CACAATGTCCAGGCGGGTT 60.603 57.895 2.94 0.00 38.11 4.11
4522 5599 2.034066 CACAATGTCCAGGCGGGT 59.966 61.111 2.94 0.00 38.11 5.28
4523 5600 2.040544 GTCACAATGTCCAGGCGGG 61.041 63.158 0.00 0.00 38.37 6.13
4524 5601 3.578456 GTCACAATGTCCAGGCGG 58.422 61.111 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.