Multiple sequence alignment - TraesCS3D01G479600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G479600 chr3D 100.000 3867 0 0 1 3867 578648042 578651908 0.000000e+00 7142
1 TraesCS3D01G479600 chr3D 82.406 2336 307 48 585 2863 578620337 578622625 0.000000e+00 1941
2 TraesCS3D01G479600 chr3D 84.953 844 94 14 1837 2649 578282366 578281525 0.000000e+00 824
3 TraesCS3D01G479600 chr3D 93.673 490 26 5 1 487 461320088 461320575 0.000000e+00 728
4 TraesCS3D01G479600 chr3D 93.159 497 27 6 1 492 12056015 12055521 0.000000e+00 723
5 TraesCS3D01G479600 chr3D 88.978 372 41 0 1048 1419 578282735 578282364 9.790000e-126 460
6 TraesCS3D01G479600 chr3D 87.399 373 33 9 3470 3835 95570785 95571150 2.150000e-112 416
7 TraesCS3D01G479600 chr3D 96.262 107 4 0 480 586 501079165 501079271 3.970000e-40 176
8 TraesCS3D01G479600 chr3D 95.370 108 5 0 480 587 374392467 374392360 5.140000e-39 172
9 TraesCS3D01G479600 chr3B 93.592 2013 97 21 889 2872 771769685 771767676 0.000000e+00 2974
10 TraesCS3D01G479600 chr3B 85.297 1816 204 34 1093 2863 771789529 771787732 0.000000e+00 1816
11 TraesCS3D01G479600 chr3B 83.754 1742 214 18 743 2460 771794472 771792776 0.000000e+00 1585
12 TraesCS3D01G479600 chr3B 84.830 323 23 5 585 896 771775062 771774755 6.280000e-78 302
13 TraesCS3D01G479600 chr3B 90.286 175 17 0 2873 3047 746846480 746846306 3.010000e-56 230
14 TraesCS3D01G479600 chr3A 82.437 2027 254 37 594 2571 714000950 713998977 0.000000e+00 1677
15 TraesCS3D01G479600 chr3A 86.358 799 83 15 3075 3860 476306254 476305469 0.000000e+00 848
16 TraesCS3D01G479600 chr3A 83.254 627 79 17 2873 3476 640450690 640450067 1.570000e-153 553
17 TraesCS3D01G479600 chr3A 90.395 354 14 9 2311 2664 713994028 713993695 7.620000e-122 448
18 TraesCS3D01G479600 chr3A 89.518 353 27 6 3493 3843 640450021 640449677 4.590000e-119 438
19 TraesCS3D01G479600 chr3A 90.323 248 24 0 1048 1295 713995883 713995636 3.730000e-85 326
20 TraesCS3D01G479600 chr3A 96.575 146 5 0 2664 2809 713983186 713983041 3.860000e-60 243
21 TraesCS3D01G479600 chr4A 86.909 825 57 24 3071 3865 722879460 722880263 0.000000e+00 878
22 TraesCS3D01G479600 chr4A 90.751 173 16 0 2875 3047 722879215 722879387 8.360000e-57 231
23 TraesCS3D01G479600 chr2A 86.449 797 85 12 3075 3860 618289847 618289063 0.000000e+00 852
24 TraesCS3D01G479600 chr2A 89.205 176 18 1 2873 3047 618290098 618289923 6.500000e-53 219
25 TraesCS3D01G479600 chr6D 83.661 967 92 28 2923 3835 46458434 46457480 0.000000e+00 850
26 TraesCS3D01G479600 chr5D 86.667 795 71 20 3075 3860 424978895 424978127 0.000000e+00 848
27 TraesCS3D01G479600 chr5D 93.964 497 22 7 1 494 254593997 254593506 0.000000e+00 745
28 TraesCS3D01G479600 chr5D 93.852 488 21 7 1 482 525327206 525327690 0.000000e+00 726
29 TraesCS3D01G479600 chr5D 84.026 626 74 16 2873 3476 57073026 57072405 2.590000e-161 579
30 TraesCS3D01G479600 chr5D 83.943 629 75 17 2869 3476 91871546 91870923 2.590000e-161 579
31 TraesCS3D01G479600 chr7A 86.090 798 85 17 3075 3860 650862582 650863365 0.000000e+00 835
32 TraesCS3D01G479600 chr7A 85.106 799 81 20 3075 3860 670887376 670886603 0.000000e+00 782
33 TraesCS3D01G479600 chr7A 89.205 176 18 1 2873 3047 650862331 650862506 6.500000e-53 219
34 TraesCS3D01G479600 chr7A 88.268 179 21 0 2869 3047 79101093 79100915 8.410000e-52 215
35 TraesCS3D01G479600 chr7A 83.673 196 21 4 2852 3047 670887636 670887452 1.430000e-39 174
36 TraesCS3D01G479600 chr7D 96.258 481 14 3 1 478 56285912 56285433 0.000000e+00 785
37 TraesCS3D01G479600 chr7D 95.277 487 20 2 1 485 554422044 554421559 0.000000e+00 769
38 TraesCS3D01G479600 chr7D 95.238 483 17 6 1 480 104758259 104758738 0.000000e+00 760
39 TraesCS3D01G479600 chr7D 95.228 482 20 2 1 479 568365478 568364997 0.000000e+00 760
40 TraesCS3D01G479600 chr7D 94.802 481 21 3 1 479 36941826 36941348 0.000000e+00 747
41 TraesCS3D01G479600 chr7D 94.650 486 19 6 1 482 46709411 46709893 0.000000e+00 747
42 TraesCS3D01G479600 chr7D 94.737 114 6 0 480 593 117435464 117435577 1.100000e-40 178
43 TraesCS3D01G479600 chr7D 93.966 116 7 0 480 595 575487346 575487461 3.970000e-40 176
44 TraesCS3D01G479600 chr7D 96.226 106 4 0 480 585 278579756 278579651 1.430000e-39 174
45 TraesCS3D01G479600 chr7D 93.750 112 7 0 480 591 97007050 97006939 6.640000e-38 169
46 TraesCS3D01G479600 chrUn 94.286 490 21 6 1 486 45207951 45208437 0.000000e+00 743
47 TraesCS3D01G479600 chr4D 94.191 482 23 4 1 479 483164330 483164809 0.000000e+00 730
48 TraesCS3D01G479600 chr4D 93.776 482 25 4 1 479 483156534 483157013 0.000000e+00 719
49 TraesCS3D01G479600 chr4D 95.536 112 5 0 480 591 276215976 276215865 3.070000e-41 180
50 TraesCS3D01G479600 chr2D 93.686 491 23 7 1 487 10221188 10220702 0.000000e+00 728
51 TraesCS3D01G479600 chr2D 96.190 105 4 0 480 584 643241560 643241664 5.140000e-39 172
52 TraesCS3D01G479600 chr5B 86.329 651 71 13 3224 3866 9258205 9258845 0.000000e+00 693
53 TraesCS3D01G479600 chr5B 83.810 630 73 18 2871 3476 44874390 44875014 4.330000e-159 571
54 TraesCS3D01G479600 chr7B 83.573 627 76 18 2873 3476 600589255 600588633 2.610000e-156 562
55 TraesCS3D01G479600 chr7B 92.241 116 9 0 480 595 378921974 378922089 8.600000e-37 165
56 TraesCS3D01G479600 chr1D 91.573 356 24 3 3071 3423 20707687 20707335 1.620000e-133 486
57 TraesCS3D01G479600 chr1D 87.500 176 5 3 2872 3047 20709812 20709654 1.830000e-43 187


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G479600 chr3D 578648042 578651908 3866 False 7142.0 7142 100.000000 1 3867 1 chr3D.!!$F5 3866
1 TraesCS3D01G479600 chr3D 578620337 578622625 2288 False 1941.0 1941 82.406000 585 2863 1 chr3D.!!$F4 2278
2 TraesCS3D01G479600 chr3D 578281525 578282735 1210 True 642.0 824 86.965500 1048 2649 2 chr3D.!!$R3 1601
3 TraesCS3D01G479600 chr3B 771767676 771769685 2009 True 2974.0 2974 93.592000 889 2872 1 chr3B.!!$R2 1983
4 TraesCS3D01G479600 chr3B 771787732 771794472 6740 True 1700.5 1816 84.525500 743 2863 2 chr3B.!!$R4 2120
5 TraesCS3D01G479600 chr3A 476305469 476306254 785 True 848.0 848 86.358000 3075 3860 1 chr3A.!!$R1 785
6 TraesCS3D01G479600 chr3A 713993695 714000950 7255 True 817.0 1677 87.718333 594 2664 3 chr3A.!!$R4 2070
7 TraesCS3D01G479600 chr3A 640449677 640450690 1013 True 495.5 553 86.386000 2873 3843 2 chr3A.!!$R3 970
8 TraesCS3D01G479600 chr4A 722879215 722880263 1048 False 554.5 878 88.830000 2875 3865 2 chr4A.!!$F1 990
9 TraesCS3D01G479600 chr2A 618289063 618290098 1035 True 535.5 852 87.827000 2873 3860 2 chr2A.!!$R1 987
10 TraesCS3D01G479600 chr6D 46457480 46458434 954 True 850.0 850 83.661000 2923 3835 1 chr6D.!!$R1 912
11 TraesCS3D01G479600 chr5D 424978127 424978895 768 True 848.0 848 86.667000 3075 3860 1 chr5D.!!$R4 785
12 TraesCS3D01G479600 chr5D 57072405 57073026 621 True 579.0 579 84.026000 2873 3476 1 chr5D.!!$R1 603
13 TraesCS3D01G479600 chr5D 91870923 91871546 623 True 579.0 579 83.943000 2869 3476 1 chr5D.!!$R2 607
14 TraesCS3D01G479600 chr7A 650862331 650863365 1034 False 527.0 835 87.647500 2873 3860 2 chr7A.!!$F1 987
15 TraesCS3D01G479600 chr7A 670886603 670887636 1033 True 478.0 782 84.389500 2852 3860 2 chr7A.!!$R2 1008
16 TraesCS3D01G479600 chr5B 9258205 9258845 640 False 693.0 693 86.329000 3224 3866 1 chr5B.!!$F1 642
17 TraesCS3D01G479600 chr5B 44874390 44875014 624 False 571.0 571 83.810000 2871 3476 1 chr5B.!!$F2 605
18 TraesCS3D01G479600 chr7B 600588633 600589255 622 True 562.0 562 83.573000 2873 3476 1 chr7B.!!$R1 603
19 TraesCS3D01G479600 chr1D 20707335 20709812 2477 True 336.5 486 89.536500 2872 3423 2 chr1D.!!$R1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
293 294 0.030369 GGTACGAGGCCTGATGTACG 59.970 60.0 23.20 17.03 38.40 3.67 F
294 295 0.030369 GTACGAGGCCTGATGTACGG 59.970 60.0 12.00 0.00 0.00 4.02 F
542 543 0.033090 GTACTATAGGGCGTGTGGGC 59.967 60.0 4.43 0.00 41.35 5.36 F
582 583 0.168128 GTGTGGGCATTAGCGTTGTC 59.832 55.0 0.00 0.00 43.41 3.18 F
811 830 0.395173 AGTTTGCCGTGGAAACCTGT 60.395 50.0 14.22 0.00 34.42 4.00 F
1784 6455 0.457851 GTGGTGCTATGACGAGAGCT 59.542 55.0 0.00 0.00 37.33 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1827 6498 0.179181 CGCCATCTGCATGTTGACAC 60.179 55.0 0.0 0.0 41.33 3.67 R
1877 6548 0.668096 CACCGCCGTAAAGTAGCACA 60.668 55.0 0.0 0.0 0.00 4.57 R
2300 7004 0.173255 CAAAACATTGCCCCGCTAGG 59.827 55.0 0.0 0.0 37.24 3.02 R
2413 12344 0.610232 CCCCACCAAGAAGAAGGCTG 60.610 60.0 0.0 0.0 0.00 4.85 R
2414 12345 1.068352 ACCCCACCAAGAAGAAGGCT 61.068 55.0 0.0 0.0 0.00 4.58 R
3071 14967 0.820871 ACCTCTCGCCTGAAGCTTAG 59.179 55.0 0.0 0.0 40.39 2.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 4.497473 TTTTGTAGTGCTACATGGCAAC 57.503 40.909 12.18 0.00 44.54 4.17
42 43 3.417069 TTGTAGTGCTACATGGCAACT 57.583 42.857 12.18 0.00 44.54 3.16
43 44 2.698803 TGTAGTGCTACATGGCAACTG 58.301 47.619 7.87 0.00 44.18 3.16
44 45 1.398390 GTAGTGCTACATGGCAACTGC 59.602 52.381 0.00 0.00 44.18 4.40
45 46 3.825959 GTAGTGCTACATGGCAACTGCC 61.826 54.545 14.04 14.04 46.67 4.85
47 48 6.716620 GTAGTGCTACATGGCAACTGCCTA 62.717 50.000 20.97 8.56 46.65 3.93
57 58 2.076863 GCAACTGCCTAGTGTTAGTGG 58.923 52.381 0.00 0.00 37.19 4.00
58 59 2.699954 CAACTGCCTAGTGTTAGTGGG 58.300 52.381 0.00 0.00 37.19 4.61
59 60 2.025636 ACTGCCTAGTGTTAGTGGGT 57.974 50.000 0.00 0.00 35.34 4.51
60 61 1.623811 ACTGCCTAGTGTTAGTGGGTG 59.376 52.381 0.00 0.00 35.34 4.61
61 62 0.981183 TGCCTAGTGTTAGTGGGTGG 59.019 55.000 0.00 0.00 0.00 4.61
62 63 0.392595 GCCTAGTGTTAGTGGGTGGC 60.393 60.000 0.00 0.00 0.00 5.01
63 64 0.981183 CCTAGTGTTAGTGGGTGGCA 59.019 55.000 0.00 0.00 0.00 4.92
64 65 1.349688 CCTAGTGTTAGTGGGTGGCAA 59.650 52.381 0.00 0.00 0.00 4.52
65 66 2.423577 CTAGTGTTAGTGGGTGGCAAC 58.576 52.381 0.00 0.00 0.00 4.17
66 67 0.843984 AGTGTTAGTGGGTGGCAACT 59.156 50.000 0.97 0.00 37.61 3.16
67 68 1.202770 AGTGTTAGTGGGTGGCAACTC 60.203 52.381 0.97 0.00 37.61 3.01
76 77 2.091555 TGGGTGGCAACTCCTAAAGTTT 60.092 45.455 0.97 0.00 46.26 2.66
77 78 2.963101 GGGTGGCAACTCCTAAAGTTTT 59.037 45.455 0.97 0.00 46.26 2.43
78 79 3.243737 GGGTGGCAACTCCTAAAGTTTTG 60.244 47.826 0.97 0.00 46.26 2.44
79 80 3.634910 GGTGGCAACTCCTAAAGTTTTGA 59.365 43.478 0.00 0.00 46.26 2.69
80 81 4.098807 GGTGGCAACTCCTAAAGTTTTGAA 59.901 41.667 0.00 0.00 46.26 2.69
81 82 5.394773 GGTGGCAACTCCTAAAGTTTTGAAA 60.395 40.000 0.00 0.00 46.26 2.69
82 83 6.280643 GTGGCAACTCCTAAAGTTTTGAAAT 58.719 36.000 0.00 0.00 46.26 2.17
83 84 6.420903 GTGGCAACTCCTAAAGTTTTGAAATC 59.579 38.462 0.00 0.00 46.26 2.17
84 85 6.097554 TGGCAACTCCTAAAGTTTTGAAATCA 59.902 34.615 0.00 0.00 46.26 2.57
85 86 7.154656 GGCAACTCCTAAAGTTTTGAAATCAT 58.845 34.615 0.00 0.00 46.26 2.45
86 87 7.116805 GGCAACTCCTAAAGTTTTGAAATCATG 59.883 37.037 0.00 0.00 46.26 3.07
87 88 7.116805 GCAACTCCTAAAGTTTTGAAATCATGG 59.883 37.037 0.00 0.00 46.26 3.66
88 89 7.839680 ACTCCTAAAGTTTTGAAATCATGGT 57.160 32.000 0.00 0.00 33.03 3.55
89 90 8.934023 ACTCCTAAAGTTTTGAAATCATGGTA 57.066 30.769 0.00 0.00 33.03 3.25
90 91 9.362151 ACTCCTAAAGTTTTGAAATCATGGTAA 57.638 29.630 0.00 0.00 33.03 2.85
91 92 9.626045 CTCCTAAAGTTTTGAAATCATGGTAAC 57.374 33.333 0.00 0.00 0.00 2.50
92 93 9.362151 TCCTAAAGTTTTGAAATCATGGTAACT 57.638 29.630 0.00 0.00 37.61 2.24
93 94 9.410556 CCTAAAGTTTTGAAATCATGGTAACTG 57.589 33.333 0.00 0.00 37.61 3.16
94 95 7.713764 AAAGTTTTGAAATCATGGTAACTGC 57.286 32.000 0.00 0.00 37.61 4.40
95 96 6.403866 AGTTTTGAAATCATGGTAACTGCA 57.596 33.333 0.00 0.00 37.61 4.41
96 97 6.449698 AGTTTTGAAATCATGGTAACTGCAG 58.550 36.000 13.48 13.48 37.61 4.41
97 98 6.040842 AGTTTTGAAATCATGGTAACTGCAGT 59.959 34.615 15.25 15.25 37.61 4.40
98 99 7.230510 AGTTTTGAAATCATGGTAACTGCAGTA 59.769 33.333 22.01 4.30 37.61 2.74
99 100 6.741992 TTGAAATCATGGTAACTGCAGTAG 57.258 37.500 22.01 6.41 37.61 2.57
100 101 6.048732 TGAAATCATGGTAACTGCAGTAGA 57.951 37.500 22.01 8.69 37.61 2.59
101 102 5.874810 TGAAATCATGGTAACTGCAGTAGAC 59.125 40.000 22.01 20.19 37.61 2.59
102 103 3.887621 TCATGGTAACTGCAGTAGACC 57.112 47.619 30.80 30.80 35.71 3.85
103 104 3.169908 TCATGGTAACTGCAGTAGACCA 58.830 45.455 36.94 36.94 43.76 4.02
104 105 3.195610 TCATGGTAACTGCAGTAGACCAG 59.804 47.826 37.13 30.75 43.24 4.00
105 106 2.884320 TGGTAACTGCAGTAGACCAGA 58.116 47.619 34.00 21.16 38.49 3.86
106 107 2.561419 TGGTAACTGCAGTAGACCAGAC 59.439 50.000 34.00 18.21 38.49 3.51
107 108 2.094130 GGTAACTGCAGTAGACCAGACC 60.094 54.545 31.78 20.98 35.42 3.85
108 109 1.717032 AACTGCAGTAGACCAGACCA 58.283 50.000 22.01 0.00 33.40 4.02
109 110 1.944177 ACTGCAGTAGACCAGACCAT 58.056 50.000 20.16 0.00 33.40 3.55
110 111 3.101643 ACTGCAGTAGACCAGACCATA 57.898 47.619 20.16 0.00 33.40 2.74
111 112 2.761208 ACTGCAGTAGACCAGACCATAC 59.239 50.000 20.16 0.00 33.40 2.39
112 113 2.760650 CTGCAGTAGACCAGACCATACA 59.239 50.000 5.25 0.00 0.00 2.29
113 114 3.374764 TGCAGTAGACCAGACCATACAT 58.625 45.455 0.00 0.00 0.00 2.29
114 115 3.132824 TGCAGTAGACCAGACCATACATG 59.867 47.826 0.00 0.00 0.00 3.21
125 126 1.466856 CCATACATGGCAACTGCAGT 58.533 50.000 15.25 15.25 41.75 4.40
126 127 1.820519 CCATACATGGCAACTGCAGTT 59.179 47.619 26.36 26.36 41.75 3.16
135 136 3.586843 AACTGCAGTTGACCAACCA 57.413 47.368 30.66 1.38 42.06 3.67
136 137 2.071778 AACTGCAGTTGACCAACCAT 57.928 45.000 30.66 2.58 42.06 3.55
137 138 1.321474 ACTGCAGTTGACCAACCATG 58.679 50.000 15.25 3.99 42.06 3.66
138 139 3.597023 AACTGCAGTTGACCAACCATGG 61.597 50.000 30.66 11.19 43.92 3.66
148 149 1.909700 CCAACCATGGCAACTGTAGT 58.090 50.000 13.04 0.00 40.58 2.73
149 150 2.238521 CCAACCATGGCAACTGTAGTT 58.761 47.619 13.04 0.00 40.58 2.24
160 161 2.743636 ACTGTAGTTGTCCGACATGG 57.256 50.000 1.09 0.00 40.09 3.66
161 162 1.337823 ACTGTAGTTGTCCGACATGGC 60.338 52.381 1.09 0.00 37.80 4.40
162 163 0.682292 TGTAGTTGTCCGACATGGCA 59.318 50.000 1.09 0.00 37.80 4.92
163 164 1.070914 TGTAGTTGTCCGACATGGCAA 59.929 47.619 1.09 0.00 37.80 4.52
164 165 1.463444 GTAGTTGTCCGACATGGCAAC 59.537 52.381 1.09 5.44 46.38 4.17
165 166 0.889186 AGTTGTCCGACATGGCAACC 60.889 55.000 1.09 0.00 46.81 3.77
166 167 1.963855 TTGTCCGACATGGCAACCG 60.964 57.895 1.09 0.00 37.80 4.44
167 168 2.047655 GTCCGACATGGCAACCGA 60.048 61.111 0.00 0.00 37.80 4.69
168 169 1.669760 GTCCGACATGGCAACCGAA 60.670 57.895 0.00 0.00 37.80 4.30
169 170 1.375396 TCCGACATGGCAACCGAAG 60.375 57.895 0.00 0.00 37.80 3.79
170 171 1.671054 CCGACATGGCAACCGAAGT 60.671 57.895 0.00 0.00 0.00 3.01
171 172 1.234615 CCGACATGGCAACCGAAGTT 61.235 55.000 0.00 0.00 36.33 2.66
172 173 0.165944 CGACATGGCAACCGAAGTTC 59.834 55.000 0.00 0.00 32.45 3.01
173 174 1.234821 GACATGGCAACCGAAGTTCA 58.765 50.000 3.32 0.00 32.45 3.18
174 175 1.197721 GACATGGCAACCGAAGTTCAG 59.802 52.381 3.32 0.00 32.45 3.02
175 176 0.109597 CATGGCAACCGAAGTTCAGC 60.110 55.000 3.32 1.20 32.45 4.26
176 177 1.577328 ATGGCAACCGAAGTTCAGCG 61.577 55.000 3.32 0.00 32.45 5.18
177 178 1.959226 GGCAACCGAAGTTCAGCGA 60.959 57.895 3.32 0.00 32.45 4.93
178 179 1.204312 GCAACCGAAGTTCAGCGAC 59.796 57.895 3.32 0.00 32.45 5.19
179 180 1.495584 GCAACCGAAGTTCAGCGACA 61.496 55.000 3.32 0.00 32.45 4.35
180 181 1.148310 CAACCGAAGTTCAGCGACAT 58.852 50.000 3.32 0.00 32.45 3.06
181 182 1.136252 CAACCGAAGTTCAGCGACATG 60.136 52.381 3.32 0.00 32.45 3.21
182 183 0.670546 ACCGAAGTTCAGCGACATGG 60.671 55.000 3.32 0.00 0.00 3.66
183 184 1.421485 CGAAGTTCAGCGACATGGC 59.579 57.895 3.32 0.00 0.00 4.40
184 185 1.291184 CGAAGTTCAGCGACATGGCA 61.291 55.000 0.00 0.00 34.64 4.92
185 186 0.874390 GAAGTTCAGCGACATGGCAA 59.126 50.000 0.00 0.00 34.64 4.52
186 187 0.593128 AAGTTCAGCGACATGGCAAC 59.407 50.000 0.00 0.00 34.64 4.17
187 188 0.250467 AGTTCAGCGACATGGCAACT 60.250 50.000 0.00 0.00 34.64 3.16
188 189 1.001974 AGTTCAGCGACATGGCAACTA 59.998 47.619 0.00 0.00 30.24 2.24
189 190 1.128692 GTTCAGCGACATGGCAACTAC 59.871 52.381 0.00 0.00 34.64 2.73
190 191 0.320050 TCAGCGACATGGCAACTACA 59.680 50.000 0.00 0.00 34.64 2.74
191 192 0.723414 CAGCGACATGGCAACTACAG 59.277 55.000 0.00 0.00 34.64 2.74
192 193 0.321671 AGCGACATGGCAACTACAGT 59.678 50.000 0.00 0.00 34.64 3.55
193 194 1.156736 GCGACATGGCAACTACAGTT 58.843 50.000 0.00 0.00 39.12 3.16
194 195 2.028476 AGCGACATGGCAACTACAGTTA 60.028 45.455 0.00 0.00 36.32 2.24
195 196 2.739913 GCGACATGGCAACTACAGTTAA 59.260 45.455 0.00 0.00 36.32 2.01
196 197 3.181520 GCGACATGGCAACTACAGTTAAG 60.182 47.826 0.00 0.00 36.32 1.85
197 198 3.181520 CGACATGGCAACTACAGTTAAGC 60.182 47.826 0.00 0.00 36.32 3.09
198 199 2.742053 ACATGGCAACTACAGTTAAGCG 59.258 45.455 0.00 0.00 36.32 4.68
199 200 2.823924 TGGCAACTACAGTTAAGCGA 57.176 45.000 0.00 0.00 36.32 4.93
200 201 3.114668 TGGCAACTACAGTTAAGCGAA 57.885 42.857 0.00 0.00 36.32 4.70
201 202 2.803956 TGGCAACTACAGTTAAGCGAAC 59.196 45.455 0.00 0.00 36.32 3.95
202 203 2.803956 GGCAACTACAGTTAAGCGAACA 59.196 45.455 7.21 0.00 40.86 3.18
203 204 3.435671 GGCAACTACAGTTAAGCGAACAT 59.564 43.478 7.21 0.00 40.86 2.71
204 205 4.394795 GCAACTACAGTTAAGCGAACATG 58.605 43.478 7.21 0.00 40.86 3.21
205 206 4.669197 GCAACTACAGTTAAGCGAACATGG 60.669 45.833 0.00 0.67 40.86 3.66
206 207 4.530710 ACTACAGTTAAGCGAACATGGA 57.469 40.909 0.00 0.08 40.86 3.41
207 208 4.243270 ACTACAGTTAAGCGAACATGGAC 58.757 43.478 0.00 0.00 40.86 4.02
208 209 2.066262 ACAGTTAAGCGAACATGGACG 58.934 47.619 0.00 3.41 40.86 4.79
209 210 2.288579 ACAGTTAAGCGAACATGGACGA 60.289 45.455 15.76 0.00 40.86 4.20
210 211 2.345641 CAGTTAAGCGAACATGGACGAG 59.654 50.000 15.76 0.00 40.86 4.18
211 212 1.659098 GTTAAGCGAACATGGACGAGG 59.341 52.381 15.76 0.00 38.02 4.63
212 213 0.174845 TAAGCGAACATGGACGAGGG 59.825 55.000 15.76 0.00 0.00 4.30
213 214 1.827399 AAGCGAACATGGACGAGGGT 61.827 55.000 15.76 0.00 0.00 4.34
214 215 1.810030 GCGAACATGGACGAGGGTC 60.810 63.158 15.76 0.00 42.66 4.46
215 216 1.890894 CGAACATGGACGAGGGTCT 59.109 57.895 7.81 0.00 42.97 3.85
216 217 0.458543 CGAACATGGACGAGGGTCTG 60.459 60.000 7.81 0.00 42.97 3.51
217 218 0.108138 GAACATGGACGAGGGTCTGG 60.108 60.000 0.00 0.00 42.97 3.86
218 219 0.544357 AACATGGACGAGGGTCTGGA 60.544 55.000 0.00 0.00 42.97 3.86
219 220 1.258445 ACATGGACGAGGGTCTGGAC 61.258 60.000 0.00 0.00 42.97 4.02
230 231 2.559785 GTCTGGACCATGGCAACTG 58.440 57.895 13.04 6.56 37.61 3.16
231 232 1.303561 TCTGGACCATGGCAACTGC 60.304 57.895 13.04 0.00 41.14 4.40
232 233 2.672651 TGGACCATGGCAACTGCG 60.673 61.111 13.04 0.00 43.26 5.18
233 234 3.443045 GGACCATGGCAACTGCGG 61.443 66.667 13.04 0.00 43.26 5.69
234 235 3.443045 GACCATGGCAACTGCGGG 61.443 66.667 13.04 0.28 43.26 6.13
235 236 3.918253 GACCATGGCAACTGCGGGA 62.918 63.158 13.04 0.00 43.26 5.14
236 237 3.443045 CCATGGCAACTGCGGGAC 61.443 66.667 0.00 0.00 43.26 4.46
251 252 4.994201 GACGCGCGGTGACTGTCA 62.994 66.667 35.22 6.36 0.00 3.58
259 260 2.665185 GTGACTGTCACGTGGGGC 60.665 66.667 23.54 9.24 37.67 5.80
285 286 2.754658 CCACGAGGTACGAGGCCT 60.755 66.667 3.86 3.86 44.49 5.19
286 287 2.490217 CACGAGGTACGAGGCCTG 59.510 66.667 12.00 5.11 45.77 4.85
287 288 2.044555 CACGAGGTACGAGGCCTGA 61.045 63.158 12.00 0.00 45.77 3.86
288 289 1.076923 ACGAGGTACGAGGCCTGAT 60.077 57.895 12.00 0.00 45.77 2.90
289 290 1.360551 CGAGGTACGAGGCCTGATG 59.639 63.158 12.00 1.38 45.77 3.07
290 291 1.384989 CGAGGTACGAGGCCTGATGT 61.385 60.000 12.00 8.78 45.77 3.06
291 292 1.688772 GAGGTACGAGGCCTGATGTA 58.311 55.000 12.00 7.59 36.29 2.29
292 293 1.337387 GAGGTACGAGGCCTGATGTAC 59.663 57.143 22.54 22.54 36.29 2.90
293 294 0.030369 GGTACGAGGCCTGATGTACG 59.970 60.000 23.20 17.03 38.40 3.67
294 295 0.030369 GTACGAGGCCTGATGTACGG 59.970 60.000 12.00 0.00 0.00 4.02
296 297 2.822399 GAGGCCTGATGTACGGGG 59.178 66.667 12.00 0.00 44.77 5.73
299 300 4.157120 GCCTGATGTACGGGGCGT 62.157 66.667 0.00 0.00 44.77 5.68
300 301 2.202878 CCTGATGTACGGGGCGTG 60.203 66.667 0.00 0.00 41.39 5.34
301 302 2.577059 CTGATGTACGGGGCGTGT 59.423 61.111 0.00 0.00 41.39 4.49
302 303 1.809619 CTGATGTACGGGGCGTGTG 60.810 63.158 0.00 0.00 41.39 3.82
303 304 2.510691 GATGTACGGGGCGTGTGG 60.511 66.667 0.00 0.00 41.39 4.17
304 305 4.090588 ATGTACGGGGCGTGTGGG 62.091 66.667 0.00 0.00 41.39 4.61
310 311 4.789123 GGGGCGTGTGGGCGTTAT 62.789 66.667 0.00 0.00 43.46 1.89
311 312 3.199891 GGGCGTGTGGGCGTTATC 61.200 66.667 0.00 0.00 43.46 1.75
312 313 2.125269 GGCGTGTGGGCGTTATCT 60.125 61.111 0.00 0.00 0.00 1.98
313 314 1.142314 GGCGTGTGGGCGTTATCTA 59.858 57.895 0.00 0.00 0.00 1.98
314 315 0.249741 GGCGTGTGGGCGTTATCTAT 60.250 55.000 0.00 0.00 0.00 1.98
315 316 1.578583 GCGTGTGGGCGTTATCTATT 58.421 50.000 0.00 0.00 0.00 1.73
316 317 1.937899 GCGTGTGGGCGTTATCTATTT 59.062 47.619 0.00 0.00 0.00 1.40
317 318 2.033151 GCGTGTGGGCGTTATCTATTTC 60.033 50.000 0.00 0.00 0.00 2.17
318 319 2.217847 CGTGTGGGCGTTATCTATTTCG 59.782 50.000 0.00 0.00 0.00 3.46
319 320 2.033151 GTGTGGGCGTTATCTATTTCGC 60.033 50.000 0.00 0.00 46.42 4.70
323 324 2.943843 GCGTTATCTATTTCGCCCAC 57.056 50.000 0.00 0.00 42.33 4.61
324 325 2.206750 GCGTTATCTATTTCGCCCACA 58.793 47.619 0.00 0.00 42.33 4.17
325 326 2.033151 GCGTTATCTATTTCGCCCACAC 60.033 50.000 0.00 0.00 42.33 3.82
326 327 2.217847 CGTTATCTATTTCGCCCACACG 59.782 50.000 0.00 0.00 0.00 4.49
327 328 1.860676 TATCTATTTCGCCCACACGC 58.139 50.000 0.00 0.00 0.00 5.34
328 329 0.107897 ATCTATTTCGCCCACACGCA 60.108 50.000 0.00 0.00 0.00 5.24
329 330 1.017177 TCTATTTCGCCCACACGCAC 61.017 55.000 0.00 0.00 0.00 5.34
330 331 2.291508 CTATTTCGCCCACACGCACG 62.292 60.000 0.00 0.00 0.00 5.34
345 346 2.885861 ACGCGTGTGAGAGGGATC 59.114 61.111 12.93 0.00 0.00 3.36
346 347 2.278206 CGCGTGTGAGAGGGATCG 60.278 66.667 0.00 0.00 0.00 3.69
347 348 2.105128 GCGTGTGAGAGGGATCGG 59.895 66.667 0.00 0.00 0.00 4.18
348 349 2.808315 CGTGTGAGAGGGATCGGG 59.192 66.667 0.00 0.00 0.00 5.14
349 350 1.753078 CGTGTGAGAGGGATCGGGA 60.753 63.158 0.00 0.00 0.00 5.14
350 351 1.729470 CGTGTGAGAGGGATCGGGAG 61.729 65.000 0.00 0.00 0.00 4.30
351 352 1.075970 TGTGAGAGGGATCGGGAGG 60.076 63.158 0.00 0.00 0.00 4.30
352 353 1.834822 GTGAGAGGGATCGGGAGGG 60.835 68.421 0.00 0.00 0.00 4.30
353 354 2.012794 TGAGAGGGATCGGGAGGGA 61.013 63.158 0.00 0.00 0.00 4.20
354 355 1.233369 GAGAGGGATCGGGAGGGAA 59.767 63.158 0.00 0.00 0.00 3.97
355 356 0.398664 GAGAGGGATCGGGAGGGAAA 60.399 60.000 0.00 0.00 0.00 3.13
356 357 0.044244 AGAGGGATCGGGAGGGAAAA 59.956 55.000 0.00 0.00 0.00 2.29
357 358 0.916809 GAGGGATCGGGAGGGAAAAA 59.083 55.000 0.00 0.00 0.00 1.94
376 377 5.806654 AAAAAGATGTGTGGGCATTACTT 57.193 34.783 0.00 0.00 0.00 2.24
377 378 4.789012 AAAGATGTGTGGGCATTACTTG 57.211 40.909 0.00 0.00 0.00 3.16
378 379 3.439857 AGATGTGTGGGCATTACTTGT 57.560 42.857 0.00 0.00 0.00 3.16
379 380 3.766545 AGATGTGTGGGCATTACTTGTT 58.233 40.909 0.00 0.00 0.00 2.83
380 381 4.151883 AGATGTGTGGGCATTACTTGTTT 58.848 39.130 0.00 0.00 0.00 2.83
381 382 4.588528 AGATGTGTGGGCATTACTTGTTTT 59.411 37.500 0.00 0.00 0.00 2.43
382 383 4.052159 TGTGTGGGCATTACTTGTTTTG 57.948 40.909 0.00 0.00 0.00 2.44
383 384 2.799978 GTGTGGGCATTACTTGTTTTGC 59.200 45.455 0.00 0.00 0.00 3.68
388 389 3.104843 GCATTACTTGTTTTGCCCACA 57.895 42.857 0.00 0.00 0.00 4.17
389 390 3.663025 GCATTACTTGTTTTGCCCACAT 58.337 40.909 0.00 0.00 0.00 3.21
390 391 3.432933 GCATTACTTGTTTTGCCCACATG 59.567 43.478 0.00 0.00 0.00 3.21
391 392 4.630111 CATTACTTGTTTTGCCCACATGT 58.370 39.130 0.00 0.00 36.68 3.21
392 393 5.777802 CATTACTTGTTTTGCCCACATGTA 58.222 37.500 0.00 0.00 35.03 2.29
393 394 5.446143 TTACTTGTTTTGCCCACATGTAG 57.554 39.130 0.00 0.00 36.60 2.74
394 395 2.627699 ACTTGTTTTGCCCACATGTAGG 59.372 45.455 5.87 5.87 32.35 3.18
395 396 2.373335 TGTTTTGCCCACATGTAGGT 57.627 45.000 12.14 0.00 0.00 3.08
396 397 1.959985 TGTTTTGCCCACATGTAGGTG 59.040 47.619 12.14 5.59 38.52 4.00
397 398 1.960689 GTTTTGCCCACATGTAGGTGT 59.039 47.619 12.14 0.00 37.06 4.16
398 399 1.614996 TTTGCCCACATGTAGGTGTG 58.385 50.000 12.14 0.23 46.98 3.82
399 400 0.476338 TTGCCCACATGTAGGTGTGT 59.524 50.000 12.14 0.00 46.21 3.72
400 401 0.250684 TGCCCACATGTAGGTGTGTG 60.251 55.000 12.14 0.00 46.21 3.82
401 402 0.036164 GCCCACATGTAGGTGTGTGA 59.964 55.000 12.14 0.00 46.58 3.58
402 403 1.945819 GCCCACATGTAGGTGTGTGAG 60.946 57.143 12.14 0.00 46.58 3.51
403 404 1.442769 CCACATGTAGGTGTGTGAGC 58.557 55.000 0.00 0.00 46.58 4.26
404 405 1.002430 CCACATGTAGGTGTGTGAGCT 59.998 52.381 0.00 0.00 46.58 4.09
405 406 2.071540 CACATGTAGGTGTGTGAGCTG 58.928 52.381 0.00 0.00 46.58 4.24
406 407 1.694150 ACATGTAGGTGTGTGAGCTGT 59.306 47.619 0.00 0.00 33.31 4.40
407 408 2.104792 ACATGTAGGTGTGTGAGCTGTT 59.895 45.455 0.00 0.00 33.31 3.16
408 409 2.526304 TGTAGGTGTGTGAGCTGTTC 57.474 50.000 0.00 0.00 33.31 3.18
409 410 1.070134 TGTAGGTGTGTGAGCTGTTCC 59.930 52.381 0.00 0.00 33.31 3.62
410 411 1.344763 GTAGGTGTGTGAGCTGTTCCT 59.655 52.381 0.00 0.00 33.31 3.36
411 412 0.394565 AGGTGTGTGAGCTGTTCCTC 59.605 55.000 0.00 0.00 0.00 3.71
412 413 0.394565 GGTGTGTGAGCTGTTCCTCT 59.605 55.000 0.00 0.00 33.02 3.69
413 414 1.202698 GGTGTGTGAGCTGTTCCTCTT 60.203 52.381 0.00 0.00 33.02 2.85
414 415 2.037251 GGTGTGTGAGCTGTTCCTCTTA 59.963 50.000 0.00 0.00 33.02 2.10
415 416 3.307059 GGTGTGTGAGCTGTTCCTCTTAT 60.307 47.826 0.00 0.00 33.02 1.73
416 417 4.319177 GTGTGTGAGCTGTTCCTCTTATT 58.681 43.478 0.00 0.00 33.02 1.40
417 418 4.757149 GTGTGTGAGCTGTTCCTCTTATTT 59.243 41.667 0.00 0.00 33.02 1.40
418 419 5.932303 GTGTGTGAGCTGTTCCTCTTATTTA 59.068 40.000 0.00 0.00 33.02 1.40
419 420 5.932303 TGTGTGAGCTGTTCCTCTTATTTAC 59.068 40.000 0.00 0.00 33.02 2.01
420 421 5.351740 GTGTGAGCTGTTCCTCTTATTTACC 59.648 44.000 0.00 0.00 33.02 2.85
421 422 5.012664 TGTGAGCTGTTCCTCTTATTTACCA 59.987 40.000 0.00 0.00 33.02 3.25
422 423 5.351740 GTGAGCTGTTCCTCTTATTTACCAC 59.648 44.000 0.00 0.00 33.02 4.16
423 424 5.012664 TGAGCTGTTCCTCTTATTTACCACA 59.987 40.000 0.00 0.00 33.02 4.17
424 425 5.246307 AGCTGTTCCTCTTATTTACCACAC 58.754 41.667 0.00 0.00 0.00 3.82
425 426 5.001232 GCTGTTCCTCTTATTTACCACACA 58.999 41.667 0.00 0.00 0.00 3.72
426 427 5.472137 GCTGTTCCTCTTATTTACCACACAA 59.528 40.000 0.00 0.00 0.00 3.33
427 428 6.016610 GCTGTTCCTCTTATTTACCACACAAA 60.017 38.462 0.00 0.00 0.00 2.83
428 429 7.469456 GCTGTTCCTCTTATTTACCACACAAAA 60.469 37.037 0.00 0.00 0.00 2.44
429 430 8.472007 TGTTCCTCTTATTTACCACACAAAAT 57.528 30.769 0.00 0.00 0.00 1.82
430 431 8.356657 TGTTCCTCTTATTTACCACACAAAATG 58.643 33.333 0.00 0.00 0.00 2.32
431 432 8.357402 GTTCCTCTTATTTACCACACAAAATGT 58.643 33.333 0.00 0.00 44.81 2.71
442 443 1.039856 ACAAAATGTGTGGGCAGACC 58.960 50.000 0.00 0.00 39.72 3.85
452 453 4.484872 GGCAGACCCCCTAACGCC 62.485 72.222 0.00 0.00 0.00 5.68
453 454 4.484872 GCAGACCCCCTAACGCCC 62.485 72.222 0.00 0.00 0.00 6.13
454 455 3.006728 CAGACCCCCTAACGCCCA 61.007 66.667 0.00 0.00 0.00 5.36
455 456 3.007323 AGACCCCCTAACGCCCAC 61.007 66.667 0.00 0.00 0.00 4.61
456 457 3.324108 GACCCCCTAACGCCCACA 61.324 66.667 0.00 0.00 0.00 4.17
457 458 3.617143 GACCCCCTAACGCCCACAC 62.617 68.421 0.00 0.00 0.00 3.82
458 459 4.770874 CCCCCTAACGCCCACACG 62.771 72.222 0.00 0.00 39.50 4.49
472 473 0.438445 CACACGTGTGGCACTTATCG 59.562 55.000 35.65 18.40 42.10 2.92
473 474 0.669318 ACACGTGTGGCACTTATCGG 60.669 55.000 22.71 13.07 34.19 4.18
474 475 1.740296 ACGTGTGGCACTTATCGGC 60.740 57.895 19.83 0.00 31.34 5.54
475 476 2.798501 CGTGTGGCACTTATCGGCG 61.799 63.158 19.83 0.00 31.34 6.46
476 477 1.740296 GTGTGGCACTTATCGGCGT 60.740 57.895 19.83 0.00 0.00 5.68
477 478 1.447140 TGTGGCACTTATCGGCGTC 60.447 57.895 19.83 0.00 0.00 5.19
478 479 2.171725 GTGGCACTTATCGGCGTCC 61.172 63.158 11.13 0.00 0.00 4.79
479 480 2.185867 GGCACTTATCGGCGTCCA 59.814 61.111 6.85 0.00 0.00 4.02
480 481 1.448893 GGCACTTATCGGCGTCCAA 60.449 57.895 6.85 0.00 0.00 3.53
481 482 1.022451 GGCACTTATCGGCGTCCAAA 61.022 55.000 6.85 0.00 0.00 3.28
482 483 0.373716 GCACTTATCGGCGTCCAAAG 59.626 55.000 6.85 9.02 0.00 2.77
483 484 2.004583 CACTTATCGGCGTCCAAAGA 57.995 50.000 6.85 0.00 0.00 2.52
484 485 2.550978 CACTTATCGGCGTCCAAAGAT 58.449 47.619 6.85 0.00 0.00 2.40
485 486 2.936498 CACTTATCGGCGTCCAAAGATT 59.064 45.455 6.85 0.00 0.00 2.40
486 487 3.374058 CACTTATCGGCGTCCAAAGATTT 59.626 43.478 6.85 0.00 0.00 2.17
487 488 3.621715 ACTTATCGGCGTCCAAAGATTTC 59.378 43.478 6.85 0.00 0.00 2.17
488 489 1.379527 ATCGGCGTCCAAAGATTTCC 58.620 50.000 6.85 0.00 0.00 3.13
489 490 0.035598 TCGGCGTCCAAAGATTTCCA 59.964 50.000 6.85 0.00 0.00 3.53
490 491 0.168128 CGGCGTCCAAAGATTTCCAC 59.832 55.000 0.00 0.00 0.00 4.02
491 492 1.243902 GGCGTCCAAAGATTTCCACA 58.756 50.000 0.00 0.00 0.00 4.17
492 493 1.818674 GGCGTCCAAAGATTTCCACAT 59.181 47.619 0.00 0.00 0.00 3.21
493 494 2.415893 GGCGTCCAAAGATTTCCACATG 60.416 50.000 0.00 0.00 0.00 3.21
494 495 2.867429 CGTCCAAAGATTTCCACATGC 58.133 47.619 0.00 0.00 0.00 4.06
495 496 2.228582 CGTCCAAAGATTTCCACATGCA 59.771 45.455 0.00 0.00 0.00 3.96
496 497 3.119388 CGTCCAAAGATTTCCACATGCAT 60.119 43.478 0.00 0.00 0.00 3.96
497 498 4.178540 GTCCAAAGATTTCCACATGCATG 58.821 43.478 25.09 25.09 0.00 4.06
498 499 2.933906 CCAAAGATTTCCACATGCATGC 59.066 45.455 26.53 11.82 0.00 4.06
499 500 3.591023 CAAAGATTTCCACATGCATGCA 58.409 40.909 26.53 25.04 0.00 3.96
500 501 4.188462 CAAAGATTTCCACATGCATGCAT 58.812 39.130 27.46 27.46 37.08 3.96
510 511 2.802792 GCATGCATGCGGTGACAT 59.197 55.556 33.99 3.77 44.67 3.06
512 513 1.065109 CATGCATGCGGTGACATGG 59.935 57.895 14.93 0.00 46.14 3.66
513 514 2.777972 ATGCATGCGGTGACATGGC 61.778 57.895 14.09 0.00 46.14 4.40
514 515 4.541482 GCATGCGGTGACATGGCG 62.541 66.667 0.00 0.00 46.14 5.69
515 516 3.126879 CATGCGGTGACATGGCGT 61.127 61.111 0.00 0.00 43.05 5.68
516 517 1.813337 CATGCGGTGACATGGCGTA 60.813 57.895 0.00 0.00 43.05 4.42
517 518 1.521457 ATGCGGTGACATGGCGTAG 60.521 57.895 0.00 0.00 0.00 3.51
518 519 2.125673 GCGGTGACATGGCGTAGT 60.126 61.111 0.00 0.00 0.00 2.73
519 520 1.140161 GCGGTGACATGGCGTAGTA 59.860 57.895 0.00 0.00 0.00 1.82
520 521 0.249322 GCGGTGACATGGCGTAGTAT 60.249 55.000 0.00 0.00 0.00 2.12
521 522 1.487482 CGGTGACATGGCGTAGTATG 58.513 55.000 0.00 0.00 0.00 2.39
522 523 1.202371 CGGTGACATGGCGTAGTATGT 60.202 52.381 0.00 0.00 39.37 2.29
523 524 2.201732 GGTGACATGGCGTAGTATGTG 58.798 52.381 0.00 0.00 37.51 3.21
524 525 2.418197 GGTGACATGGCGTAGTATGTGT 60.418 50.000 0.00 0.00 37.51 3.72
525 526 3.181484 GGTGACATGGCGTAGTATGTGTA 60.181 47.826 0.00 0.00 37.51 2.90
526 527 3.795101 GTGACATGGCGTAGTATGTGTAC 59.205 47.826 0.00 0.00 37.51 2.90
527 528 3.697542 TGACATGGCGTAGTATGTGTACT 59.302 43.478 0.00 0.00 43.45 2.73
528 529 4.883006 TGACATGGCGTAGTATGTGTACTA 59.117 41.667 0.00 0.00 41.35 1.82
529 530 5.533528 TGACATGGCGTAGTATGTGTACTAT 59.466 40.000 0.00 0.00 43.37 2.12
530 531 6.711645 TGACATGGCGTAGTATGTGTACTATA 59.288 38.462 0.00 0.00 43.37 1.31
531 532 7.094933 TGACATGGCGTAGTATGTGTACTATAG 60.095 40.741 0.00 0.00 43.37 1.31
532 533 6.150641 ACATGGCGTAGTATGTGTACTATAGG 59.849 42.308 4.43 0.00 43.37 2.57
533 534 5.005740 TGGCGTAGTATGTGTACTATAGGG 58.994 45.833 4.43 0.00 43.37 3.53
534 535 4.142513 GGCGTAGTATGTGTACTATAGGGC 60.143 50.000 4.43 0.00 43.37 5.19
535 536 4.436584 GCGTAGTATGTGTACTATAGGGCG 60.437 50.000 4.43 0.21 43.37 6.13
536 537 4.692625 CGTAGTATGTGTACTATAGGGCGT 59.307 45.833 4.43 0.00 43.37 5.68
537 538 5.390251 CGTAGTATGTGTACTATAGGGCGTG 60.390 48.000 4.43 0.00 43.37 5.34
538 539 4.467769 AGTATGTGTACTATAGGGCGTGT 58.532 43.478 4.43 0.00 39.36 4.49
539 540 3.728076 ATGTGTACTATAGGGCGTGTG 57.272 47.619 4.43 0.00 0.00 3.82
540 541 1.752498 TGTGTACTATAGGGCGTGTGG 59.248 52.381 4.43 0.00 0.00 4.17
541 542 1.068127 GTGTACTATAGGGCGTGTGGG 59.932 57.143 4.43 0.00 0.00 4.61
542 543 0.033090 GTACTATAGGGCGTGTGGGC 59.967 60.000 4.43 0.00 41.35 5.36
543 544 1.457823 TACTATAGGGCGTGTGGGCG 61.458 60.000 4.43 0.00 43.46 6.13
544 545 3.515316 CTATAGGGCGTGTGGGCGG 62.515 68.421 0.00 0.00 43.46 6.13
551 552 3.656045 CGTGTGGGCGGGTTTGAC 61.656 66.667 0.00 0.00 0.00 3.18
552 553 2.203294 GTGTGGGCGGGTTTGACT 60.203 61.111 0.00 0.00 0.00 3.41
553 554 2.112297 TGTGGGCGGGTTTGACTC 59.888 61.111 0.00 0.00 0.00 3.36
554 555 2.671963 GTGGGCGGGTTTGACTCC 60.672 66.667 0.00 0.00 0.00 3.85
555 556 3.961414 TGGGCGGGTTTGACTCCC 61.961 66.667 0.00 0.00 41.41 4.30
556 557 3.961414 GGGCGGGTTTGACTCCCA 61.961 66.667 1.91 0.00 44.81 4.37
557 558 2.671963 GGCGGGTTTGACTCCCAC 60.672 66.667 1.91 0.00 44.81 4.61
558 559 2.671963 GCGGGTTTGACTCCCACC 60.672 66.667 1.91 0.00 44.81 4.61
559 560 2.833227 CGGGTTTGACTCCCACCA 59.167 61.111 1.91 0.00 44.81 4.17
560 561 1.599797 CGGGTTTGACTCCCACCAC 60.600 63.158 1.91 0.00 44.81 4.16
561 562 1.534697 GGGTTTGACTCCCACCACA 59.465 57.895 0.00 0.00 44.05 4.17
562 563 0.822121 GGGTTTGACTCCCACCACAC 60.822 60.000 0.00 0.00 44.05 3.82
563 564 1.164041 GGTTTGACTCCCACCACACG 61.164 60.000 0.00 0.00 0.00 4.49
564 565 0.463116 GTTTGACTCCCACCACACGT 60.463 55.000 0.00 0.00 0.00 4.49
565 566 0.462937 TTTGACTCCCACCACACGTG 60.463 55.000 15.48 15.48 42.62 4.49
566 567 1.618876 TTGACTCCCACCACACGTGT 61.619 55.000 17.22 17.22 41.26 4.49
567 568 1.594293 GACTCCCACCACACGTGTG 60.594 63.158 36.13 36.13 45.23 3.82
576 577 1.501741 CACACGTGTGGGCATTAGC 59.498 57.895 35.65 0.00 42.10 3.09
577 578 2.032634 ACACGTGTGGGCATTAGCG 61.033 57.895 22.71 0.00 43.41 4.26
578 579 2.032634 CACGTGTGGGCATTAGCGT 61.033 57.895 7.58 0.00 43.41 5.07
579 580 1.302192 ACGTGTGGGCATTAGCGTT 60.302 52.632 0.00 0.00 43.41 4.84
580 581 1.134487 CGTGTGGGCATTAGCGTTG 59.866 57.895 0.00 0.00 43.41 4.10
581 582 1.573829 CGTGTGGGCATTAGCGTTGT 61.574 55.000 0.00 0.00 43.41 3.32
582 583 0.168128 GTGTGGGCATTAGCGTTGTC 59.832 55.000 0.00 0.00 43.41 3.18
583 584 0.958382 TGTGGGCATTAGCGTTGTCC 60.958 55.000 0.87 0.87 43.41 4.02
664 667 3.729862 ATCTGTACCTTAGTTAGCCGC 57.270 47.619 0.00 0.00 0.00 6.53
665 668 1.402968 TCTGTACCTTAGTTAGCCGCG 59.597 52.381 0.00 0.00 0.00 6.46
666 669 1.402968 CTGTACCTTAGTTAGCCGCGA 59.597 52.381 8.23 0.00 0.00 5.87
667 670 1.402968 TGTACCTTAGTTAGCCGCGAG 59.597 52.381 8.23 0.00 0.00 5.03
695 705 5.107182 CGATTCCTCGATCATTGGAATTCTG 60.107 44.000 18.74 11.67 46.78 3.02
707 717 4.104383 TGGAATTCTGGAGCTCACTTTT 57.896 40.909 17.19 1.93 0.00 2.27
714 724 6.959639 TTCTGGAGCTCACTTTTACAAATT 57.040 33.333 17.19 0.00 0.00 1.82
715 725 6.959639 TCTGGAGCTCACTTTTACAAATTT 57.040 33.333 17.19 0.00 0.00 1.82
716 726 7.346751 TCTGGAGCTCACTTTTACAAATTTT 57.653 32.000 17.19 0.00 0.00 1.82
717 727 8.458573 TCTGGAGCTCACTTTTACAAATTTTA 57.541 30.769 17.19 0.00 0.00 1.52
718 728 8.349983 TCTGGAGCTCACTTTTACAAATTTTAC 58.650 33.333 17.19 0.00 0.00 2.01
719 729 7.430441 TGGAGCTCACTTTTACAAATTTTACC 58.570 34.615 17.19 0.00 0.00 2.85
720 730 7.068839 TGGAGCTCACTTTTACAAATTTTACCA 59.931 33.333 17.19 0.00 0.00 3.25
721 731 8.088365 GGAGCTCACTTTTACAAATTTTACCAT 58.912 33.333 17.19 0.00 0.00 3.55
722 732 8.816640 AGCTCACTTTTACAAATTTTACCATG 57.183 30.769 0.00 0.00 0.00 3.66
723 733 8.421002 AGCTCACTTTTACAAATTTTACCATGT 58.579 29.630 0.00 0.00 0.00 3.21
724 734 9.685828 GCTCACTTTTACAAATTTTACCATGTA 57.314 29.630 0.00 0.00 0.00 2.29
811 830 0.395173 AGTTTGCCGTGGAAACCTGT 60.395 50.000 14.22 0.00 34.42 4.00
818 837 2.413634 GCCGTGGAAACCTGTAATTTCG 60.414 50.000 0.00 0.00 37.00 3.46
848 867 3.130633 TGCATAGCACATGGATCGTAAC 58.869 45.455 0.00 0.00 31.71 2.50
849 868 3.181466 TGCATAGCACATGGATCGTAACT 60.181 43.478 0.00 0.00 31.71 2.24
850 869 3.430218 GCATAGCACATGGATCGTAACTC 59.570 47.826 0.00 0.00 0.00 3.01
851 870 2.209838 AGCACATGGATCGTAACTCG 57.790 50.000 0.00 0.00 41.41 4.18
852 871 1.476891 AGCACATGGATCGTAACTCGT 59.523 47.619 0.00 0.00 40.80 4.18
853 872 2.686405 AGCACATGGATCGTAACTCGTA 59.314 45.455 0.00 0.00 40.80 3.43
854 873 3.129813 AGCACATGGATCGTAACTCGTAA 59.870 43.478 0.00 0.00 40.80 3.18
864 883 3.501828 TCGTAACTCGTAAGCCACAAGTA 59.498 43.478 0.00 0.00 40.80 2.24
867 886 5.175491 CGTAACTCGTAAGCCACAAGTAAAA 59.825 40.000 0.00 0.00 34.52 1.52
874 893 5.341196 CGTAAGCCACAAGTAAAATTTTCCG 59.659 40.000 6.72 0.00 0.00 4.30
876 895 5.270893 AGCCACAAGTAAAATTTTCCGTT 57.729 34.783 6.72 0.00 0.00 4.44
1040 1069 2.710902 CCCCGAGCTGTCGTGATCA 61.711 63.158 0.00 0.00 45.30 2.92
1043 1072 0.932123 CCGAGCTGTCGTGATCATCG 60.932 60.000 0.00 5.00 45.30 3.84
1064 1093 2.607750 ATGGACCACACGGAGGCT 60.608 61.111 0.00 0.00 35.59 4.58
1095 1133 3.393106 TGCTCGCAGCCATCCTCA 61.393 61.111 5.82 0.00 41.51 3.86
1221 1266 0.752009 CTCGGTCGAGGGGATCTTCA 60.752 60.000 12.09 0.00 38.51 3.02
1390 6058 1.516603 GCGACGGCTACAACCTCTC 60.517 63.158 0.00 0.00 35.83 3.20
1392 6060 1.592400 CGACGGCTACAACCTCTCCA 61.592 60.000 0.00 0.00 0.00 3.86
1393 6061 0.606604 GACGGCTACAACCTCTCCAA 59.393 55.000 0.00 0.00 0.00 3.53
1415 6083 2.676471 GGCGGCATGAGGGTGTTT 60.676 61.111 3.07 0.00 0.00 2.83
1494 6162 3.755628 GCTCCACCGCGTACCTGA 61.756 66.667 4.92 0.00 0.00 3.86
1508 6176 3.119743 CGTACCTGACGTTTGATCCTACA 60.120 47.826 0.00 0.00 46.86 2.74
1556 6224 7.592736 TCTTGATACAACCTAAGGATCTAGGA 58.407 38.462 13.58 0.00 41.02 2.94
1563 6231 5.208294 ACCTAAGGATCTAGGACTGTTCA 57.792 43.478 13.58 0.00 41.02 3.18
1666 6337 1.890979 CGAGCATGGACATGGAGGC 60.891 63.158 13.63 0.00 39.16 4.70
1784 6455 0.457851 GTGGTGCTATGACGAGAGCT 59.542 55.000 0.00 0.00 37.33 4.09
1824 6495 5.470098 AGAGTGTGGTTCATGTACATGTTTC 59.530 40.000 30.03 21.18 39.72 2.78
1827 6498 4.518590 TGTGGTTCATGTACATGTTTCTGG 59.481 41.667 30.03 8.08 39.72 3.86
1877 6548 5.118990 GTGTACTGTCATGGAGCATTACAT 58.881 41.667 14.04 0.00 34.75 2.29
1969 6642 8.718102 TTTCTTGCCAACTCTAGTATTCATAC 57.282 34.615 0.00 0.00 0.00 2.39
2101 6778 3.906846 AGGAGGCATTATCTCGGAAGATT 59.093 43.478 0.00 0.00 42.39 2.40
2276 6980 9.770097 TGGATCTTAGATAACAATCATGTTCTC 57.230 33.333 0.00 0.00 46.78 2.87
2300 7004 8.682128 TCGACAAATATGGAAATAACAAAAGC 57.318 30.769 0.00 0.00 0.00 3.51
2349 12271 7.363880 GGAGCTGGGACGATGATAATATTCTTA 60.364 40.741 0.00 0.00 0.00 2.10
2414 12345 5.745227 GGATTTCATCCCTGTAAAGAGACA 58.255 41.667 0.00 0.00 43.88 3.41
2549 12480 5.652891 AGACGAGTCATTTCTATACACACCT 59.347 40.000 5.99 0.00 0.00 4.00
2565 12496 2.700371 ACACCTTGCATGATCGGAGATA 59.300 45.455 0.00 0.00 45.12 1.98
2592 12523 6.013206 TCCACTAAGTGCCTACTCCAATAAAA 60.013 38.462 0.00 0.00 35.69 1.52
2751 12714 9.778741 TTATAGTCTTCTCAGTTTGTTTGTCAT 57.221 29.630 0.00 0.00 0.00 3.06
2784 12748 7.942341 TGTCTGGTACCTTCTTATGTTTTTCAT 59.058 33.333 14.36 0.00 40.25 2.57
2897 12870 4.487714 AAATCACGACTGGACATGGTAT 57.512 40.909 0.00 0.00 0.00 2.73
2984 12957 6.372103 AGCGCGTATACTAATATCTCTTCACT 59.628 38.462 8.43 0.00 0.00 3.41
3063 14959 4.320714 GCTGAATTTGTGCAGATCAGAACA 60.321 41.667 15.11 0.00 39.85 3.18
3071 14967 4.023792 TGTGCAGATCAGAACACATTGAAC 60.024 41.667 0.00 0.00 38.07 3.18
3097 15013 2.386661 TCAGGCGAGAGGTGAAAATC 57.613 50.000 0.00 0.00 0.00 2.17
3101 15017 2.503356 AGGCGAGAGGTGAAAATCTCAT 59.497 45.455 3.39 0.00 41.71 2.90
3171 15090 9.619316 CGTATTTGAATGGTTCACAAAATTCTA 57.381 29.630 0.00 0.00 39.87 2.10
3247 15166 6.489469 TCGAATCAAAATTCAAAACACACG 57.511 33.333 0.00 0.00 41.22 4.49
3248 15167 5.052040 TCGAATCAAAATTCAAAACACACGC 60.052 36.000 0.00 0.00 41.22 5.34
3301 15220 7.271511 TGAATAGTGCCACAAAAAGACAAAAT 58.728 30.769 0.00 0.00 0.00 1.82
3303 15222 5.343307 AGTGCCACAAAAAGACAAAATCT 57.657 34.783 0.00 0.00 40.46 2.40
3346 15266 6.452494 TCGTATTTGTCCTTTTTGTTTCCA 57.548 33.333 0.00 0.00 0.00 3.53
3490 15439 3.264193 TCATGGGATATCCTTCCAATCGG 59.736 47.826 21.18 3.82 37.53 4.18
3508 15468 1.704007 GGAAGGAGATGGGCAGGAGG 61.704 65.000 0.00 0.00 0.00 4.30
3568 15528 2.360165 CCAGACATATGCTGGCCTTTTC 59.640 50.000 24.08 5.06 45.66 2.29
3598 15558 2.365293 TGATGATACCTGACCCACATCG 59.635 50.000 0.00 0.00 37.51 3.84
3600 15560 0.464036 GATACCTGACCCACATCGCA 59.536 55.000 0.00 0.00 0.00 5.10
3694 15657 7.601130 ACTCACGTTCATGTTTATTTGCTAGTA 59.399 33.333 0.00 0.00 0.00 1.82
3695 15658 7.735500 TCACGTTCATGTTTATTTGCTAGTAC 58.264 34.615 0.00 0.00 0.00 2.73
3696 15659 6.676995 CACGTTCATGTTTATTTGCTAGTACG 59.323 38.462 0.00 0.00 0.00 3.67
3697 15660 6.366877 ACGTTCATGTTTATTTGCTAGTACGT 59.633 34.615 0.00 0.00 0.00 3.57
3769 15737 4.319177 CCAGCTGCTCCTAATGTAATACC 58.681 47.826 8.66 0.00 0.00 2.73
3796 15764 8.040727 AGTTTCTTGCAATCCAGTTTTTAAAGT 58.959 29.630 0.00 0.00 0.00 2.66
3804 15772 7.569957 GCAATCCAGTTTTTAAAGTTCTGCATG 60.570 37.037 0.00 0.00 0.00 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 8.872417 GCAGTTGCCATGTAGCACTACAAAAA 62.872 42.308 14.09 4.67 43.97 1.94
20 21 7.501821 GCAGTTGCCATGTAGCACTACAAAA 62.502 44.000 14.09 4.97 43.97 2.44
21 22 6.101050 GCAGTTGCCATGTAGCACTACAAA 62.101 45.833 14.09 2.10 43.97 2.83
22 23 4.666264 GCAGTTGCCATGTAGCACTACAA 61.666 47.826 14.09 0.00 43.97 2.41
23 24 3.192939 GCAGTTGCCATGTAGCACTACA 61.193 50.000 12.62 12.62 43.97 2.74
24 25 1.398390 GCAGTTGCCATGTAGCACTAC 59.602 52.381 0.70 0.70 43.97 2.73
25 26 1.737838 GCAGTTGCCATGTAGCACTA 58.262 50.000 0.00 0.00 43.97 2.74
26 27 2.559785 GCAGTTGCCATGTAGCACT 58.440 52.632 0.00 0.00 43.97 4.40
37 38 2.076863 CCACTAACACTAGGCAGTTGC 58.923 52.381 7.49 0.00 41.14 4.17
38 39 2.038557 ACCCACTAACACTAGGCAGTTG 59.961 50.000 7.49 0.00 30.46 3.16
39 40 2.038557 CACCCACTAACACTAGGCAGTT 59.961 50.000 0.00 0.00 30.46 3.16
40 41 1.623811 CACCCACTAACACTAGGCAGT 59.376 52.381 0.00 0.00 34.42 4.40
41 42 1.066143 CCACCCACTAACACTAGGCAG 60.066 57.143 0.00 0.00 0.00 4.85
42 43 0.981183 CCACCCACTAACACTAGGCA 59.019 55.000 0.00 0.00 0.00 4.75
43 44 0.392595 GCCACCCACTAACACTAGGC 60.393 60.000 0.00 0.00 0.00 3.93
44 45 0.981183 TGCCACCCACTAACACTAGG 59.019 55.000 0.00 0.00 0.00 3.02
45 46 2.038557 AGTTGCCACCCACTAACACTAG 59.961 50.000 0.00 0.00 0.00 2.57
46 47 2.038033 GAGTTGCCACCCACTAACACTA 59.962 50.000 0.00 0.00 0.00 2.74
47 48 0.843984 AGTTGCCACCCACTAACACT 59.156 50.000 0.00 0.00 0.00 3.55
48 49 1.235724 GAGTTGCCACCCACTAACAC 58.764 55.000 0.00 0.00 0.00 3.32
49 50 0.109723 GGAGTTGCCACCCACTAACA 59.890 55.000 0.00 0.00 36.34 2.41
50 51 0.400594 AGGAGTTGCCACCCACTAAC 59.599 55.000 0.00 0.00 40.02 2.34
51 52 2.032965 TAGGAGTTGCCACCCACTAA 57.967 50.000 0.00 0.00 40.02 2.24
52 53 2.032965 TTAGGAGTTGCCACCCACTA 57.967 50.000 0.00 0.00 40.02 2.74
53 54 1.073923 CTTTAGGAGTTGCCACCCACT 59.926 52.381 0.00 0.00 40.02 4.00
54 55 1.202891 ACTTTAGGAGTTGCCACCCAC 60.203 52.381 0.00 0.00 40.02 4.61
55 56 1.145571 ACTTTAGGAGTTGCCACCCA 58.854 50.000 0.00 0.00 40.02 4.51
56 57 2.287977 AACTTTAGGAGTTGCCACCC 57.712 50.000 0.00 0.00 46.66 4.61
64 65 7.839680 ACCATGATTTCAAAACTTTAGGAGT 57.160 32.000 0.00 0.00 41.47 3.85
65 66 9.626045 GTTACCATGATTTCAAAACTTTAGGAG 57.374 33.333 0.00 0.00 0.00 3.69
66 67 9.362151 AGTTACCATGATTTCAAAACTTTAGGA 57.638 29.630 0.00 0.00 0.00 2.94
67 68 9.410556 CAGTTACCATGATTTCAAAACTTTAGG 57.589 33.333 0.00 0.00 0.00 2.69
68 69 8.915654 GCAGTTACCATGATTTCAAAACTTTAG 58.084 33.333 0.00 0.00 0.00 1.85
69 70 8.417106 TGCAGTTACCATGATTTCAAAACTTTA 58.583 29.630 0.00 0.00 0.00 1.85
70 71 7.271511 TGCAGTTACCATGATTTCAAAACTTT 58.728 30.769 0.00 0.00 0.00 2.66
71 72 6.815089 TGCAGTTACCATGATTTCAAAACTT 58.185 32.000 0.00 0.00 0.00 2.66
72 73 6.040842 ACTGCAGTTACCATGATTTCAAAACT 59.959 34.615 15.25 0.00 0.00 2.66
73 74 6.215845 ACTGCAGTTACCATGATTTCAAAAC 58.784 36.000 15.25 0.00 0.00 2.43
74 75 6.403866 ACTGCAGTTACCATGATTTCAAAA 57.596 33.333 15.25 0.00 0.00 2.44
75 76 6.939730 TCTACTGCAGTTACCATGATTTCAAA 59.060 34.615 27.06 0.00 0.00 2.69
76 77 6.371548 GTCTACTGCAGTTACCATGATTTCAA 59.628 38.462 27.06 0.00 0.00 2.69
77 78 5.874810 GTCTACTGCAGTTACCATGATTTCA 59.125 40.000 27.06 0.19 0.00 2.69
78 79 5.294552 GGTCTACTGCAGTTACCATGATTTC 59.705 44.000 31.35 12.57 34.72 2.17
79 80 5.186198 GGTCTACTGCAGTTACCATGATTT 58.814 41.667 31.35 7.94 34.72 2.17
80 81 4.225042 TGGTCTACTGCAGTTACCATGATT 59.775 41.667 33.52 9.81 37.70 2.57
81 82 3.774766 TGGTCTACTGCAGTTACCATGAT 59.225 43.478 33.52 10.45 37.70 2.45
82 83 3.169908 TGGTCTACTGCAGTTACCATGA 58.830 45.455 33.52 20.43 37.70 3.07
83 84 3.195610 TCTGGTCTACTGCAGTTACCATG 59.804 47.826 35.41 29.65 40.08 3.66
84 85 3.195825 GTCTGGTCTACTGCAGTTACCAT 59.804 47.826 35.41 14.09 40.08 3.55
85 86 2.561419 GTCTGGTCTACTGCAGTTACCA 59.439 50.000 34.08 34.08 39.21 3.25
86 87 2.094130 GGTCTGGTCTACTGCAGTTACC 60.094 54.545 30.39 30.39 34.99 2.85
87 88 2.561419 TGGTCTGGTCTACTGCAGTTAC 59.439 50.000 27.06 22.06 0.00 2.50
88 89 2.884320 TGGTCTGGTCTACTGCAGTTA 58.116 47.619 27.06 11.28 0.00 2.24
89 90 1.717032 TGGTCTGGTCTACTGCAGTT 58.283 50.000 27.06 9.41 0.00 3.16
90 91 1.944177 ATGGTCTGGTCTACTGCAGT 58.056 50.000 25.12 25.12 0.00 4.40
91 92 2.760650 TGTATGGTCTGGTCTACTGCAG 59.239 50.000 13.48 13.48 0.00 4.41
92 93 2.815158 TGTATGGTCTGGTCTACTGCA 58.185 47.619 0.00 0.00 0.00 4.41
93 94 3.493350 CCATGTATGGTCTGGTCTACTGC 60.493 52.174 2.66 0.00 43.05 4.40
94 95 4.327982 CCATGTATGGTCTGGTCTACTG 57.672 50.000 2.66 0.00 43.05 2.74
116 117 5.649704 CCATGGTTGGTCAACTGCAGTTG 62.650 52.174 41.30 41.30 44.06 3.16
117 118 1.682854 CATGGTTGGTCAACTGCAGTT 59.317 47.619 26.36 26.36 40.94 3.16
118 119 1.321474 CATGGTTGGTCAACTGCAGT 58.679 50.000 15.25 15.25 40.94 4.40
119 120 0.599558 CCATGGTTGGTCAACTGCAG 59.400 55.000 13.48 13.48 40.94 4.41
120 121 1.462731 GCCATGGTTGGTCAACTGCA 61.463 55.000 14.67 4.88 45.57 4.41
121 122 1.290009 GCCATGGTTGGTCAACTGC 59.710 57.895 14.67 7.73 45.57 4.40
122 123 1.039068 TTGCCATGGTTGGTCAACTG 58.961 50.000 14.67 5.26 45.57 3.16
123 124 1.039856 GTTGCCATGGTTGGTCAACT 58.960 50.000 19.25 0.00 45.93 3.16
124 125 3.586430 GTTGCCATGGTTGGTCAAC 57.414 52.632 14.67 14.29 44.74 3.18
125 126 1.039068 CAGTTGCCATGGTTGGTCAA 58.961 50.000 14.67 5.59 45.57 3.18
126 127 0.106268 ACAGTTGCCATGGTTGGTCA 60.106 50.000 14.67 0.00 45.57 4.02
127 128 1.812571 CTACAGTTGCCATGGTTGGTC 59.187 52.381 14.67 0.00 45.57 4.02
128 129 1.144913 ACTACAGTTGCCATGGTTGGT 59.855 47.619 14.67 7.66 45.57 3.67
129 130 1.909700 ACTACAGTTGCCATGGTTGG 58.090 50.000 14.67 1.60 46.66 3.77
140 141 2.870435 GCCATGTCGGACAACTACAGTT 60.870 50.000 15.72 0.00 36.12 3.16
141 142 1.337823 GCCATGTCGGACAACTACAGT 60.338 52.381 15.72 0.00 36.56 3.55
142 143 1.337728 TGCCATGTCGGACAACTACAG 60.338 52.381 15.72 1.98 36.56 2.74
143 144 0.682292 TGCCATGTCGGACAACTACA 59.318 50.000 15.72 8.46 36.56 2.74
144 145 1.463444 GTTGCCATGTCGGACAACTAC 59.537 52.381 15.72 10.65 43.12 2.73
145 146 1.609580 GGTTGCCATGTCGGACAACTA 60.610 52.381 15.72 2.39 44.53 2.24
146 147 0.889186 GGTTGCCATGTCGGACAACT 60.889 55.000 15.72 0.00 44.53 3.16
147 148 1.579429 GGTTGCCATGTCGGACAAC 59.421 57.895 15.72 8.08 44.46 3.32
148 149 1.963855 CGGTTGCCATGTCGGACAA 60.964 57.895 15.72 0.00 36.56 3.18
149 150 2.358125 CGGTTGCCATGTCGGACA 60.358 61.111 14.01 14.01 36.56 4.02
150 151 1.635663 CTTCGGTTGCCATGTCGGAC 61.636 60.000 0.00 0.00 36.56 4.79
151 152 1.375396 CTTCGGTTGCCATGTCGGA 60.375 57.895 0.00 0.00 36.56 4.55
152 153 1.234615 AACTTCGGTTGCCATGTCGG 61.235 55.000 0.00 0.00 36.72 4.79
153 154 0.165944 GAACTTCGGTTGCCATGTCG 59.834 55.000 0.00 0.00 38.41 4.35
154 155 1.197721 CTGAACTTCGGTTGCCATGTC 59.802 52.381 0.00 0.00 38.41 3.06
155 156 1.238439 CTGAACTTCGGTTGCCATGT 58.762 50.000 0.00 0.00 38.41 3.21
156 157 0.109597 GCTGAACTTCGGTTGCCATG 60.110 55.000 0.00 0.00 38.41 3.66
157 158 1.577328 CGCTGAACTTCGGTTGCCAT 61.577 55.000 0.00 0.00 38.41 4.40
158 159 2.250939 CGCTGAACTTCGGTTGCCA 61.251 57.895 0.00 0.00 38.41 4.92
159 160 1.959226 TCGCTGAACTTCGGTTGCC 60.959 57.895 0.00 0.00 38.41 4.52
160 161 1.204312 GTCGCTGAACTTCGGTTGC 59.796 57.895 0.00 0.00 38.41 4.17
161 162 1.136252 CATGTCGCTGAACTTCGGTTG 60.136 52.381 0.00 0.00 38.41 3.77
162 163 1.148310 CATGTCGCTGAACTTCGGTT 58.852 50.000 0.00 0.00 41.38 4.44
163 164 0.670546 CCATGTCGCTGAACTTCGGT 60.671 55.000 0.00 0.00 0.00 4.69
164 165 1.970917 GCCATGTCGCTGAACTTCGG 61.971 60.000 0.00 0.00 0.00 4.30
165 166 1.291184 TGCCATGTCGCTGAACTTCG 61.291 55.000 0.00 0.00 0.00 3.79
166 167 0.874390 TTGCCATGTCGCTGAACTTC 59.126 50.000 0.00 0.00 0.00 3.01
167 168 0.593128 GTTGCCATGTCGCTGAACTT 59.407 50.000 0.00 0.00 0.00 2.66
168 169 0.250467 AGTTGCCATGTCGCTGAACT 60.250 50.000 0.00 0.00 0.00 3.01
169 170 1.128692 GTAGTTGCCATGTCGCTGAAC 59.871 52.381 0.00 0.00 0.00 3.18
170 171 1.270571 TGTAGTTGCCATGTCGCTGAA 60.271 47.619 0.00 0.00 0.00 3.02
171 172 0.320050 TGTAGTTGCCATGTCGCTGA 59.680 50.000 0.00 0.00 0.00 4.26
172 173 0.723414 CTGTAGTTGCCATGTCGCTG 59.277 55.000 0.00 0.00 0.00 5.18
173 174 0.321671 ACTGTAGTTGCCATGTCGCT 59.678 50.000 0.00 0.00 0.00 4.93
174 175 1.156736 AACTGTAGTTGCCATGTCGC 58.843 50.000 0.00 0.00 36.80 5.19
175 176 3.181520 GCTTAACTGTAGTTGCCATGTCG 60.182 47.826 7.50 0.00 38.90 4.35
176 177 3.181520 CGCTTAACTGTAGTTGCCATGTC 60.182 47.826 7.50 0.00 38.90 3.06
177 178 2.742053 CGCTTAACTGTAGTTGCCATGT 59.258 45.455 7.50 0.00 38.90 3.21
178 179 3.000041 TCGCTTAACTGTAGTTGCCATG 59.000 45.455 7.50 0.00 38.90 3.66
179 180 3.328382 TCGCTTAACTGTAGTTGCCAT 57.672 42.857 7.50 0.00 38.90 4.40
180 181 2.803956 GTTCGCTTAACTGTAGTTGCCA 59.196 45.455 7.50 0.00 38.90 4.92
181 182 2.803956 TGTTCGCTTAACTGTAGTTGCC 59.196 45.455 7.50 0.00 38.90 4.52
182 183 4.394795 CATGTTCGCTTAACTGTAGTTGC 58.605 43.478 7.50 2.77 38.90 4.17
183 184 4.688879 TCCATGTTCGCTTAACTGTAGTTG 59.311 41.667 7.50 0.00 38.90 3.16
184 185 4.689345 GTCCATGTTCGCTTAACTGTAGTT 59.311 41.667 2.51 2.51 38.99 2.24
185 186 4.243270 GTCCATGTTCGCTTAACTGTAGT 58.757 43.478 0.00 0.00 38.99 2.73
186 187 3.303495 CGTCCATGTTCGCTTAACTGTAG 59.697 47.826 0.00 0.00 38.99 2.74
187 188 3.057386 TCGTCCATGTTCGCTTAACTGTA 60.057 43.478 0.00 0.00 38.99 2.74
188 189 2.066262 CGTCCATGTTCGCTTAACTGT 58.934 47.619 0.00 0.00 38.99 3.55
189 190 2.333926 TCGTCCATGTTCGCTTAACTG 58.666 47.619 0.00 0.00 38.99 3.16
190 191 2.607187 CTCGTCCATGTTCGCTTAACT 58.393 47.619 0.00 0.00 38.99 2.24
191 192 1.659098 CCTCGTCCATGTTCGCTTAAC 59.341 52.381 0.00 0.00 38.67 2.01
192 193 1.404986 CCCTCGTCCATGTTCGCTTAA 60.405 52.381 0.00 0.00 0.00 1.85
193 194 0.174845 CCCTCGTCCATGTTCGCTTA 59.825 55.000 0.00 0.00 0.00 3.09
194 195 1.079127 CCCTCGTCCATGTTCGCTT 60.079 57.895 0.00 0.00 0.00 4.68
195 196 2.227089 GACCCTCGTCCATGTTCGCT 62.227 60.000 0.00 0.00 32.40 4.93
196 197 1.810030 GACCCTCGTCCATGTTCGC 60.810 63.158 0.00 0.00 32.40 4.70
197 198 0.458543 CAGACCCTCGTCCATGTTCG 60.459 60.000 0.00 0.00 40.12 3.95
198 199 0.108138 CCAGACCCTCGTCCATGTTC 60.108 60.000 0.00 0.00 40.12 3.18
199 200 0.544357 TCCAGACCCTCGTCCATGTT 60.544 55.000 0.00 0.00 40.12 2.71
200 201 1.078528 TCCAGACCCTCGTCCATGT 59.921 57.895 0.00 0.00 40.12 3.21
201 202 1.517832 GTCCAGACCCTCGTCCATG 59.482 63.158 0.00 0.00 40.12 3.66
202 203 1.686110 GGTCCAGACCCTCGTCCAT 60.686 63.158 5.46 0.00 45.68 3.41
203 204 2.283676 GGTCCAGACCCTCGTCCA 60.284 66.667 5.46 0.00 45.68 4.02
212 213 1.589716 GCAGTTGCCATGGTCCAGAC 61.590 60.000 14.67 5.40 34.31 3.51
213 214 1.303561 GCAGTTGCCATGGTCCAGA 60.304 57.895 14.67 0.00 34.31 3.86
214 215 2.693762 CGCAGTTGCCATGGTCCAG 61.694 63.158 14.67 1.29 37.91 3.86
215 216 2.672651 CGCAGTTGCCATGGTCCA 60.673 61.111 14.67 0.00 37.91 4.02
216 217 3.443045 CCGCAGTTGCCATGGTCC 61.443 66.667 14.67 1.25 37.91 4.46
217 218 3.443045 CCCGCAGTTGCCATGGTC 61.443 66.667 14.67 6.41 37.91 4.02
218 219 3.965258 TCCCGCAGTTGCCATGGT 61.965 61.111 14.67 0.00 37.91 3.55
219 220 3.443045 GTCCCGCAGTTGCCATGG 61.443 66.667 7.63 7.63 37.91 3.66
220 221 3.803082 CGTCCCGCAGTTGCCATG 61.803 66.667 0.00 0.00 37.91 3.66
234 235 4.994201 TGACAGTCACCGCGCGTC 62.994 66.667 29.95 17.85 0.00 5.19
238 239 3.394874 CACGTGACAGTCACCGCG 61.395 66.667 25.11 17.29 44.20 6.46
239 240 3.036084 CCACGTGACAGTCACCGC 61.036 66.667 25.11 3.97 44.20 5.68
240 241 2.355837 CCCACGTGACAGTCACCG 60.356 66.667 25.11 21.28 44.20 4.94
241 242 2.030562 CCCCACGTGACAGTCACC 59.969 66.667 25.11 9.97 44.20 4.02
242 243 2.665185 GCCCCACGTGACAGTCAC 60.665 66.667 22.09 22.09 43.65 3.67
243 244 4.293648 CGCCCCACGTGACAGTCA 62.294 66.667 19.30 0.00 36.87 3.41
260 261 3.376078 TACCTCGTGGTCCCGCAC 61.376 66.667 13.38 0.00 44.78 5.34
261 262 3.376078 GTACCTCGTGGTCCCGCA 61.376 66.667 13.38 0.00 44.78 5.69
262 263 4.487412 CGTACCTCGTGGTCCCGC 62.487 72.222 13.38 1.80 44.78 6.13
263 264 2.747460 TCGTACCTCGTGGTCCCG 60.747 66.667 13.38 16.03 44.78 5.14
264 265 2.413142 CCTCGTACCTCGTGGTCCC 61.413 68.421 13.38 4.37 44.78 4.46
265 266 3.194719 CCTCGTACCTCGTGGTCC 58.805 66.667 13.38 0.00 44.78 4.46
269 270 1.384989 ATCAGGCCTCGTACCTCGTG 61.385 60.000 0.00 0.00 40.80 4.35
270 271 1.076923 ATCAGGCCTCGTACCTCGT 60.077 57.895 0.00 0.00 40.80 4.18
271 272 1.360551 CATCAGGCCTCGTACCTCG 59.639 63.158 0.00 0.00 34.42 4.63
272 273 1.337387 GTACATCAGGCCTCGTACCTC 59.663 57.143 19.45 2.54 34.42 3.85
273 274 1.400737 GTACATCAGGCCTCGTACCT 58.599 55.000 19.45 0.00 38.35 3.08
274 275 0.030369 CGTACATCAGGCCTCGTACC 59.970 60.000 22.26 10.98 32.41 3.34
275 276 0.030369 CCGTACATCAGGCCTCGTAC 59.970 60.000 19.92 19.92 0.00 3.67
276 277 1.105167 CCCGTACATCAGGCCTCGTA 61.105 60.000 0.00 1.54 0.00 3.43
277 278 2.423898 CCCGTACATCAGGCCTCGT 61.424 63.158 0.00 2.72 0.00 4.18
278 279 2.417516 CCCGTACATCAGGCCTCG 59.582 66.667 0.00 1.29 0.00 4.63
279 280 2.822399 CCCCGTACATCAGGCCTC 59.178 66.667 0.00 0.00 0.00 4.70
280 281 3.480133 GCCCCGTACATCAGGCCT 61.480 66.667 0.00 0.00 39.60 5.19
281 282 4.910585 CGCCCCGTACATCAGGCC 62.911 72.222 0.00 0.00 42.66 5.19
282 283 4.157120 ACGCCCCGTACATCAGGC 62.157 66.667 0.00 0.00 38.73 4.85
283 284 2.202878 CACGCCCCGTACATCAGG 60.203 66.667 0.00 0.00 38.32 3.86
284 285 1.809619 CACACGCCCCGTACATCAG 60.810 63.158 0.00 0.00 38.32 2.90
285 286 2.263227 CACACGCCCCGTACATCA 59.737 61.111 0.00 0.00 38.32 3.07
286 287 2.510691 CCACACGCCCCGTACATC 60.511 66.667 0.00 0.00 38.32 3.06
287 288 4.090588 CCCACACGCCCCGTACAT 62.091 66.667 0.00 0.00 38.32 2.29
293 294 4.789123 ATAACGCCCACACGCCCC 62.789 66.667 0.00 0.00 36.19 5.80
294 295 2.300850 TAGATAACGCCCACACGCCC 62.301 60.000 0.00 0.00 36.19 6.13
295 296 0.249741 ATAGATAACGCCCACACGCC 60.250 55.000 0.00 0.00 36.19 5.68
296 297 1.578583 AATAGATAACGCCCACACGC 58.421 50.000 0.00 0.00 36.19 5.34
297 298 2.217847 CGAAATAGATAACGCCCACACG 59.782 50.000 0.00 0.00 39.50 4.49
298 299 2.033151 GCGAAATAGATAACGCCCACAC 60.033 50.000 0.00 0.00 44.27 3.82
299 300 2.206750 GCGAAATAGATAACGCCCACA 58.793 47.619 0.00 0.00 44.27 4.17
300 301 2.943843 GCGAAATAGATAACGCCCAC 57.056 50.000 0.00 0.00 44.27 4.61
305 306 2.217847 CGTGTGGGCGAAATAGATAACG 59.782 50.000 0.00 0.00 0.00 3.18
306 307 2.033151 GCGTGTGGGCGAAATAGATAAC 60.033 50.000 0.00 0.00 0.00 1.89
307 308 2.206750 GCGTGTGGGCGAAATAGATAA 58.793 47.619 0.00 0.00 0.00 1.75
308 309 1.137282 TGCGTGTGGGCGAAATAGATA 59.863 47.619 0.00 0.00 35.06 1.98
309 310 0.107897 TGCGTGTGGGCGAAATAGAT 60.108 50.000 0.00 0.00 35.06 1.98
310 311 1.017177 GTGCGTGTGGGCGAAATAGA 61.017 55.000 0.00 0.00 35.06 1.98
311 312 1.423845 GTGCGTGTGGGCGAAATAG 59.576 57.895 0.00 0.00 35.06 1.73
312 313 2.384309 CGTGCGTGTGGGCGAAATA 61.384 57.895 0.00 0.00 35.06 1.40
313 314 3.722295 CGTGCGTGTGGGCGAAAT 61.722 61.111 0.00 0.00 35.06 2.17
326 327 3.649277 ATCCCTCTCACACGCGTGC 62.649 63.158 37.35 0.00 43.28 5.34
327 328 1.517257 GATCCCTCTCACACGCGTG 60.517 63.158 35.99 35.99 45.08 5.34
328 329 2.885861 GATCCCTCTCACACGCGT 59.114 61.111 5.58 5.58 0.00 6.01
329 330 2.278206 CGATCCCTCTCACACGCG 60.278 66.667 3.53 3.53 0.00 6.01
330 331 2.105128 CCGATCCCTCTCACACGC 59.895 66.667 0.00 0.00 0.00 5.34
331 332 1.729470 CTCCCGATCCCTCTCACACG 61.729 65.000 0.00 0.00 0.00 4.49
332 333 1.395826 CCTCCCGATCCCTCTCACAC 61.396 65.000 0.00 0.00 0.00 3.82
333 334 1.075970 CCTCCCGATCCCTCTCACA 60.076 63.158 0.00 0.00 0.00 3.58
334 335 1.834822 CCCTCCCGATCCCTCTCAC 60.835 68.421 0.00 0.00 0.00 3.51
335 336 1.590339 TTCCCTCCCGATCCCTCTCA 61.590 60.000 0.00 0.00 0.00 3.27
336 337 0.398664 TTTCCCTCCCGATCCCTCTC 60.399 60.000 0.00 0.00 0.00 3.20
337 338 0.044244 TTTTCCCTCCCGATCCCTCT 59.956 55.000 0.00 0.00 0.00 3.69
338 339 0.916809 TTTTTCCCTCCCGATCCCTC 59.083 55.000 0.00 0.00 0.00 4.30
339 340 3.114493 TTTTTCCCTCCCGATCCCT 57.886 52.632 0.00 0.00 0.00 4.20
354 355 5.070313 ACAAGTAATGCCCACACATCTTTTT 59.930 36.000 0.00 0.00 0.00 1.94
355 356 4.588528 ACAAGTAATGCCCACACATCTTTT 59.411 37.500 0.00 0.00 0.00 2.27
356 357 4.151883 ACAAGTAATGCCCACACATCTTT 58.848 39.130 0.00 0.00 0.00 2.52
357 358 3.766545 ACAAGTAATGCCCACACATCTT 58.233 40.909 0.00 0.00 0.00 2.40
358 359 3.439857 ACAAGTAATGCCCACACATCT 57.560 42.857 0.00 0.00 0.00 2.90
359 360 4.519540 AAACAAGTAATGCCCACACATC 57.480 40.909 0.00 0.00 0.00 3.06
360 361 4.630111 CAAAACAAGTAATGCCCACACAT 58.370 39.130 0.00 0.00 0.00 3.21
361 362 3.739519 GCAAAACAAGTAATGCCCACACA 60.740 43.478 0.00 0.00 32.73 3.72
362 363 2.799978 GCAAAACAAGTAATGCCCACAC 59.200 45.455 0.00 0.00 32.73 3.82
363 364 3.104843 GCAAAACAAGTAATGCCCACA 57.895 42.857 0.00 0.00 32.73 4.17
368 369 3.104843 TGTGGGCAAAACAAGTAATGC 57.895 42.857 2.57 2.57 38.06 3.56
369 370 4.630111 ACATGTGGGCAAAACAAGTAATG 58.370 39.130 0.00 0.00 28.35 1.90
370 371 4.953940 ACATGTGGGCAAAACAAGTAAT 57.046 36.364 0.00 0.00 28.35 1.89
371 372 4.279671 CCTACATGTGGGCAAAACAAGTAA 59.720 41.667 16.04 0.00 32.97 2.24
372 373 3.823873 CCTACATGTGGGCAAAACAAGTA 59.176 43.478 16.04 0.00 32.27 2.24
373 374 2.627699 CCTACATGTGGGCAAAACAAGT 59.372 45.455 16.04 0.00 34.21 3.16
374 375 2.627699 ACCTACATGTGGGCAAAACAAG 59.372 45.455 26.79 3.10 34.14 3.16
375 376 2.363680 CACCTACATGTGGGCAAAACAA 59.636 45.455 26.79 0.00 34.14 2.83
376 377 1.959985 CACCTACATGTGGGCAAAACA 59.040 47.619 26.79 0.00 34.14 2.83
377 378 1.960689 ACACCTACATGTGGGCAAAAC 59.039 47.619 26.79 0.00 40.62 2.43
378 379 1.959985 CACACCTACATGTGGGCAAAA 59.040 47.619 26.79 0.00 45.21 2.44
379 380 1.614996 CACACCTACATGTGGGCAAA 58.385 50.000 26.79 0.00 45.21 3.68
380 381 3.337834 CACACCTACATGTGGGCAA 57.662 52.632 26.79 0.00 45.21 4.52
386 387 1.694150 ACAGCTCACACACCTACATGT 59.306 47.619 2.69 2.69 0.00 3.21
387 388 2.462456 ACAGCTCACACACCTACATG 57.538 50.000 0.00 0.00 0.00 3.21
388 389 2.289694 GGAACAGCTCACACACCTACAT 60.290 50.000 0.00 0.00 0.00 2.29
389 390 1.070134 GGAACAGCTCACACACCTACA 59.930 52.381 0.00 0.00 0.00 2.74
390 391 1.344763 AGGAACAGCTCACACACCTAC 59.655 52.381 0.00 0.00 0.00 3.18
391 392 1.618837 GAGGAACAGCTCACACACCTA 59.381 52.381 0.00 0.00 0.00 3.08
392 393 0.394565 GAGGAACAGCTCACACACCT 59.605 55.000 0.00 0.00 0.00 4.00
393 394 0.394565 AGAGGAACAGCTCACACACC 59.605 55.000 0.00 0.00 0.00 4.16
394 395 2.246719 AAGAGGAACAGCTCACACAC 57.753 50.000 0.00 0.00 0.00 3.82
395 396 4.623932 AATAAGAGGAACAGCTCACACA 57.376 40.909 0.00 0.00 0.00 3.72
396 397 5.351740 GGTAAATAAGAGGAACAGCTCACAC 59.648 44.000 0.00 0.00 0.00 3.82
397 398 5.012664 TGGTAAATAAGAGGAACAGCTCACA 59.987 40.000 0.00 0.00 0.00 3.58
398 399 5.351740 GTGGTAAATAAGAGGAACAGCTCAC 59.648 44.000 0.00 0.00 0.00 3.51
399 400 5.012664 TGTGGTAAATAAGAGGAACAGCTCA 59.987 40.000 0.00 0.00 0.00 4.26
400 401 5.351740 GTGTGGTAAATAAGAGGAACAGCTC 59.648 44.000 0.00 0.00 0.00 4.09
401 402 5.221843 TGTGTGGTAAATAAGAGGAACAGCT 60.222 40.000 0.00 0.00 0.00 4.24
402 403 5.001232 TGTGTGGTAAATAAGAGGAACAGC 58.999 41.667 0.00 0.00 0.00 4.40
403 404 7.504924 TTTGTGTGGTAAATAAGAGGAACAG 57.495 36.000 0.00 0.00 0.00 3.16
404 405 7.883391 TTTTGTGTGGTAAATAAGAGGAACA 57.117 32.000 0.00 0.00 0.00 3.18
405 406 8.357402 ACATTTTGTGTGGTAAATAAGAGGAAC 58.643 33.333 0.00 0.00 40.28 3.62
406 407 8.472007 ACATTTTGTGTGGTAAATAAGAGGAA 57.528 30.769 0.00 0.00 40.28 3.36
423 424 1.039856 GGTCTGCCCACACATTTTGT 58.960 50.000 0.00 0.00 39.97 2.83
424 425 3.892200 GGTCTGCCCACACATTTTG 57.108 52.632 0.00 0.00 0.00 2.44
435 436 4.484872 GGCGTTAGGGGGTCTGCC 62.485 72.222 0.00 0.00 35.04 4.85
436 437 4.484872 GGGCGTTAGGGGGTCTGC 62.485 72.222 0.00 0.00 0.00 4.26
437 438 3.006728 TGGGCGTTAGGGGGTCTG 61.007 66.667 0.00 0.00 0.00 3.51
438 439 3.007323 GTGGGCGTTAGGGGGTCT 61.007 66.667 0.00 0.00 0.00 3.85
439 440 3.324108 TGTGGGCGTTAGGGGGTC 61.324 66.667 0.00 0.00 0.00 4.46
440 441 3.643554 GTGTGGGCGTTAGGGGGT 61.644 66.667 0.00 0.00 0.00 4.95
441 442 4.770874 CGTGTGGGCGTTAGGGGG 62.771 72.222 0.00 0.00 0.00 5.40
442 443 4.011517 ACGTGTGGGCGTTAGGGG 62.012 66.667 0.00 0.00 43.04 4.79
443 444 2.740826 CACGTGTGGGCGTTAGGG 60.741 66.667 7.58 0.00 43.83 3.53
444 445 2.029964 ACACGTGTGGGCGTTAGG 59.970 61.111 22.71 0.00 43.83 2.69
445 446 3.240203 CACACGTGTGGGCGTTAG 58.760 61.111 35.65 12.08 43.83 2.34
453 454 0.438445 CGATAAGTGCCACACGTGTG 59.562 55.000 36.13 36.13 45.23 3.82
454 455 0.669318 CCGATAAGTGCCACACGTGT 60.669 55.000 17.22 17.22 39.64 4.49
455 456 1.966493 GCCGATAAGTGCCACACGTG 61.966 60.000 15.48 15.48 39.64 4.49
456 457 1.740296 GCCGATAAGTGCCACACGT 60.740 57.895 0.00 0.00 39.64 4.49
457 458 2.798501 CGCCGATAAGTGCCACACG 61.799 63.158 0.00 0.00 39.64 4.49
458 459 1.693083 GACGCCGATAAGTGCCACAC 61.693 60.000 0.00 0.00 34.10 3.82
459 460 1.447140 GACGCCGATAAGTGCCACA 60.447 57.895 0.00 0.00 0.00 4.17
460 461 2.171725 GGACGCCGATAAGTGCCAC 61.172 63.158 0.00 0.00 0.00 5.01
461 462 2.173758 TTGGACGCCGATAAGTGCCA 62.174 55.000 0.00 0.00 0.00 4.92
462 463 1.022451 TTTGGACGCCGATAAGTGCC 61.022 55.000 0.00 0.00 0.00 5.01
463 464 0.373716 CTTTGGACGCCGATAAGTGC 59.626 55.000 0.00 0.00 0.00 4.40
464 465 2.004583 TCTTTGGACGCCGATAAGTG 57.995 50.000 0.00 0.00 0.00 3.16
465 466 2.981859 ATCTTTGGACGCCGATAAGT 57.018 45.000 0.00 0.00 0.00 2.24
466 467 3.002348 GGAAATCTTTGGACGCCGATAAG 59.998 47.826 0.00 0.00 0.00 1.73
467 468 2.940410 GGAAATCTTTGGACGCCGATAA 59.060 45.455 0.00 0.00 0.00 1.75
468 469 2.093394 TGGAAATCTTTGGACGCCGATA 60.093 45.455 0.00 0.00 0.00 2.92
469 470 1.339631 TGGAAATCTTTGGACGCCGAT 60.340 47.619 0.00 0.00 0.00 4.18
470 471 0.035598 TGGAAATCTTTGGACGCCGA 59.964 50.000 0.00 0.00 0.00 5.54
471 472 0.168128 GTGGAAATCTTTGGACGCCG 59.832 55.000 0.00 0.00 0.00 6.46
472 473 1.243902 TGTGGAAATCTTTGGACGCC 58.756 50.000 0.00 0.00 0.00 5.68
473 474 2.867429 CATGTGGAAATCTTTGGACGC 58.133 47.619 0.00 0.00 0.00 5.19
474 475 2.228582 TGCATGTGGAAATCTTTGGACG 59.771 45.455 0.00 0.00 0.00 4.79
475 476 3.940209 TGCATGTGGAAATCTTTGGAC 57.060 42.857 0.00 0.00 0.00 4.02
476 477 3.368635 GCATGCATGTGGAAATCTTTGGA 60.369 43.478 26.79 0.00 0.00 3.53
477 478 2.933906 GCATGCATGTGGAAATCTTTGG 59.066 45.455 26.79 0.00 0.00 3.28
478 479 3.591023 TGCATGCATGTGGAAATCTTTG 58.409 40.909 26.79 0.00 0.00 2.77
479 480 3.965379 TGCATGCATGTGGAAATCTTT 57.035 38.095 26.79 0.00 0.00 2.52
480 481 3.792401 CATGCATGCATGTGGAAATCTT 58.208 40.909 40.30 13.68 46.20 2.40
481 482 3.452755 CATGCATGCATGTGGAAATCT 57.547 42.857 40.30 14.19 46.20 2.40
494 495 1.065109 CCATGTCACCGCATGCATG 59.935 57.895 22.70 22.70 43.46 4.06
495 496 2.777972 GCCATGTCACCGCATGCAT 61.778 57.895 19.57 1.32 43.46 3.96
496 497 3.442167 GCCATGTCACCGCATGCA 61.442 61.111 19.57 0.00 43.46 3.96
497 498 4.541482 CGCCATGTCACCGCATGC 62.541 66.667 7.91 7.91 43.46 4.06
498 499 1.765161 CTACGCCATGTCACCGCATG 61.765 60.000 0.00 0.00 44.18 4.06
499 500 1.521457 CTACGCCATGTCACCGCAT 60.521 57.895 0.00 0.00 0.00 4.73
500 501 1.596895 TACTACGCCATGTCACCGCA 61.597 55.000 0.00 0.00 0.00 5.69
501 502 0.249322 ATACTACGCCATGTCACCGC 60.249 55.000 0.00 0.00 0.00 5.68
502 503 1.202371 ACATACTACGCCATGTCACCG 60.202 52.381 0.00 0.00 29.34 4.94
503 504 2.201732 CACATACTACGCCATGTCACC 58.798 52.381 0.00 0.00 33.12 4.02
504 505 2.888594 ACACATACTACGCCATGTCAC 58.111 47.619 0.00 0.00 33.12 3.67
505 506 3.697542 AGTACACATACTACGCCATGTCA 59.302 43.478 0.00 0.00 40.02 3.58
506 507 4.303086 AGTACACATACTACGCCATGTC 57.697 45.455 0.00 0.00 40.02 3.06
507 508 6.150641 CCTATAGTACACATACTACGCCATGT 59.849 42.308 0.00 0.00 44.81 3.21
508 509 6.404403 CCCTATAGTACACATACTACGCCATG 60.404 46.154 0.00 0.00 44.81 3.66
509 510 5.651139 CCCTATAGTACACATACTACGCCAT 59.349 44.000 0.00 0.00 44.81 4.40
510 511 5.005740 CCCTATAGTACACATACTACGCCA 58.994 45.833 0.00 0.00 44.81 5.69
511 512 4.142513 GCCCTATAGTACACATACTACGCC 60.143 50.000 0.00 0.00 44.81 5.68
512 513 4.436584 CGCCCTATAGTACACATACTACGC 60.437 50.000 0.00 0.00 44.81 4.42
513 514 4.692625 ACGCCCTATAGTACACATACTACG 59.307 45.833 0.00 0.00 44.81 3.51
514 515 5.471456 ACACGCCCTATAGTACACATACTAC 59.529 44.000 0.00 0.00 44.81 2.73
515 516 5.471116 CACACGCCCTATAGTACACATACTA 59.529 44.000 0.00 0.00 45.80 1.82
516 517 4.277672 CACACGCCCTATAGTACACATACT 59.722 45.833 0.00 0.00 44.22 2.12
517 518 4.543692 CACACGCCCTATAGTACACATAC 58.456 47.826 0.00 0.00 0.00 2.39
518 519 3.570975 CCACACGCCCTATAGTACACATA 59.429 47.826 0.00 0.00 0.00 2.29
519 520 2.364324 CCACACGCCCTATAGTACACAT 59.636 50.000 0.00 0.00 0.00 3.21
520 521 1.752498 CCACACGCCCTATAGTACACA 59.248 52.381 0.00 0.00 0.00 3.72
521 522 1.068127 CCCACACGCCCTATAGTACAC 59.932 57.143 0.00 0.00 0.00 2.90
522 523 1.405872 CCCACACGCCCTATAGTACA 58.594 55.000 0.00 0.00 0.00 2.90
523 524 0.033090 GCCCACACGCCCTATAGTAC 59.967 60.000 0.00 0.00 0.00 2.73
524 525 1.457823 CGCCCACACGCCCTATAGTA 61.458 60.000 0.00 0.00 0.00 1.82
525 526 2.792947 CGCCCACACGCCCTATAGT 61.793 63.158 0.00 0.00 0.00 2.12
526 527 2.029073 CGCCCACACGCCCTATAG 59.971 66.667 0.00 0.00 0.00 1.31
527 528 3.542676 CCGCCCACACGCCCTATA 61.543 66.667 0.00 0.00 0.00 1.31
534 535 3.656045 GTCAAACCCGCCCACACG 61.656 66.667 0.00 0.00 0.00 4.49
535 536 2.203294 AGTCAAACCCGCCCACAC 60.203 61.111 0.00 0.00 0.00 3.82
536 537 2.112297 GAGTCAAACCCGCCCACA 59.888 61.111 0.00 0.00 0.00 4.17
537 538 2.671963 GGAGTCAAACCCGCCCAC 60.672 66.667 0.00 0.00 0.00 4.61
538 539 3.961414 GGGAGTCAAACCCGCCCA 61.961 66.667 0.00 0.00 38.68 5.36
543 544 0.822121 GTGTGGTGGGAGTCAAACCC 60.822 60.000 10.17 0.00 46.87 4.11
544 545 1.164041 CGTGTGGTGGGAGTCAAACC 61.164 60.000 6.54 6.54 34.38 3.27
545 546 0.463116 ACGTGTGGTGGGAGTCAAAC 60.463 55.000 0.00 0.00 0.00 2.93
546 547 0.462937 CACGTGTGGTGGGAGTCAAA 60.463 55.000 7.58 0.00 43.16 2.69
547 548 1.145156 CACGTGTGGTGGGAGTCAA 59.855 57.895 7.58 0.00 43.16 3.18
548 549 2.818841 CACGTGTGGTGGGAGTCA 59.181 61.111 7.58 0.00 43.16 3.41
558 559 1.501741 GCTAATGCCCACACGTGTG 59.498 57.895 36.13 36.13 45.23 3.82
559 560 2.032634 CGCTAATGCCCACACGTGT 61.033 57.895 17.22 17.22 35.36 4.49
560 561 1.573829 AACGCTAATGCCCACACGTG 61.574 55.000 15.48 15.48 33.48 4.49
561 562 1.302192 AACGCTAATGCCCACACGT 60.302 52.632 0.00 0.00 35.36 4.49
562 563 1.134487 CAACGCTAATGCCCACACG 59.866 57.895 0.00 0.00 35.36 4.49
563 564 0.168128 GACAACGCTAATGCCCACAC 59.832 55.000 0.00 0.00 35.36 3.82
564 565 0.958382 GGACAACGCTAATGCCCACA 60.958 55.000 0.00 0.00 35.36 4.17
565 566 0.676782 AGGACAACGCTAATGCCCAC 60.677 55.000 0.00 0.00 35.36 4.61
566 567 0.906066 TAGGACAACGCTAATGCCCA 59.094 50.000 0.00 0.00 35.36 5.36
567 568 1.669265 GTTAGGACAACGCTAATGCCC 59.331 52.381 0.00 0.00 35.36 5.36
568 569 2.629051 AGTTAGGACAACGCTAATGCC 58.371 47.619 0.00 0.00 35.36 4.40
569 570 4.680171 AAAGTTAGGACAACGCTAATGC 57.320 40.909 0.00 0.00 0.00 3.56
572 573 9.880157 AGATTATTAAAGTTAGGACAACGCTAA 57.120 29.630 0.00 0.00 0.00 3.09
574 575 9.530633 CTAGATTATTAAAGTTAGGACAACGCT 57.469 33.333 0.00 0.00 0.00 5.07
575 576 8.762426 CCTAGATTATTAAAGTTAGGACAACGC 58.238 37.037 0.00 0.00 31.11 4.84
576 577 9.257651 CCCTAGATTATTAAAGTTAGGACAACG 57.742 37.037 0.00 0.00 31.11 4.10
581 582 9.956558 TGGTACCCTAGATTATTAAAGTTAGGA 57.043 33.333 10.07 0.00 31.11 2.94
583 584 9.708092 GCTGGTACCCTAGATTATTAAAGTTAG 57.292 37.037 10.07 0.00 0.00 2.34
618 619 4.399303 CAGAATAATCCAAAAGGAAGCGGT 59.601 41.667 0.00 0.00 0.00 5.68
646 649 1.402968 TCGCGGCTAACTAAGGTACAG 59.597 52.381 6.13 0.00 0.00 2.74
666 669 3.493350 CCAATGATCGAGGAATCGAACCT 60.493 47.826 13.18 13.18 45.62 3.50
667 670 2.802816 CCAATGATCGAGGAATCGAACC 59.197 50.000 4.29 0.00 45.62 3.62
668 671 3.717707 TCCAATGATCGAGGAATCGAAC 58.282 45.455 4.29 2.79 45.62 3.95
669 672 4.400529 TTCCAATGATCGAGGAATCGAA 57.599 40.909 4.29 0.00 45.62 3.71
670 673 4.607293 ATTCCAATGATCGAGGAATCGA 57.393 40.909 16.17 2.50 46.36 3.59
695 705 7.430441 TGGTAAAATTTGTAAAAGTGAGCTCC 58.570 34.615 12.15 2.40 0.00 4.70
787 806 2.817844 GGTTTCCACGGCAAACTATTCT 59.182 45.455 6.22 0.00 34.66 2.40
811 830 1.514003 TGCACGCAAGGTCGAAATTA 58.486 45.000 0.00 0.00 46.39 1.40
818 837 3.889227 TGCTATGCACGCAAGGTC 58.111 55.556 9.83 0.00 46.39 3.85
848 867 6.581166 GGAAAATTTTACTTGTGGCTTACGAG 59.419 38.462 5.85 7.18 44.94 4.18
849 868 6.440436 GGAAAATTTTACTTGTGGCTTACGA 58.560 36.000 5.85 0.00 0.00 3.43
850 869 5.341196 CGGAAAATTTTACTTGTGGCTTACG 59.659 40.000 11.35 0.00 0.00 3.18
851 870 6.210796 ACGGAAAATTTTACTTGTGGCTTAC 58.789 36.000 11.35 0.00 0.00 2.34
852 871 6.394025 ACGGAAAATTTTACTTGTGGCTTA 57.606 33.333 11.35 0.00 0.00 3.09
853 872 5.270893 ACGGAAAATTTTACTTGTGGCTT 57.729 34.783 11.35 0.00 0.00 4.35
854 873 4.929819 ACGGAAAATTTTACTTGTGGCT 57.070 36.364 11.35 0.00 0.00 4.75
874 893 3.865329 GTACGGAACCAAGTTTTCGAAC 58.135 45.455 0.00 0.00 0.00 3.95
1040 1069 0.391130 CCGTGTGGTCCATGAACGAT 60.391 55.000 20.23 0.00 36.38 3.73
1043 1072 0.673644 CCTCCGTGTGGTCCATGAAC 60.674 60.000 0.00 0.00 36.30 3.18
1078 1107 3.381333 CTGAGGATGGCTGCGAGCA 62.381 63.158 1.74 0.00 44.75 4.26
1184 1222 4.263572 TCCGGCAGGTGGTGGTTG 62.264 66.667 1.81 0.00 39.05 3.77
1187 1225 4.394712 GAGTCCGGCAGGTGGTGG 62.395 72.222 1.81 0.00 39.05 4.61
1199 1244 2.123812 ATCCCCTCGACCGAGTCC 60.124 66.667 16.86 0.00 40.44 3.85
1208 1253 0.905357 AGTTGGTGAAGATCCCCTCG 59.095 55.000 0.00 0.00 0.00 4.63
1214 1259 2.675348 GCTGCAGTAGTTGGTGAAGATC 59.325 50.000 16.64 0.00 0.00 2.75
1221 1266 1.067776 GTCGTAGCTGCAGTAGTTGGT 60.068 52.381 16.64 0.00 0.00 3.67
1286 5954 0.608130 AGTGCAGATTGCCGTAGTCA 59.392 50.000 0.00 0.00 44.23 3.41
1392 6060 2.360350 CCTCATGCCGCCACAGTT 60.360 61.111 0.00 0.00 0.00 3.16
1393 6061 4.415150 CCCTCATGCCGCCACAGT 62.415 66.667 0.00 0.00 0.00 3.55
1456 6124 3.691342 CTTCGTCAGGCGTCCCCA 61.691 66.667 0.00 0.00 42.13 4.96
1494 6162 2.925306 GCGACACTGTAGGATCAAACGT 60.925 50.000 0.00 0.00 0.00 3.99
1556 6224 1.120530 AGTCCCTCACGTTGAACAGT 58.879 50.000 0.00 0.00 0.00 3.55
1563 6231 2.143594 GACTCGCAGTCCCTCACGTT 62.144 60.000 5.33 0.00 39.28 3.99
1704 6375 5.633996 CTCGATGAGAAAACATCTAGCAC 57.366 43.478 0.00 0.00 42.86 4.40
1784 6455 3.244630 ACACTCTACCCCGCAAATTTACA 60.245 43.478 0.00 0.00 0.00 2.41
1824 6495 1.471287 CCATCTGCATGTTGACACCAG 59.529 52.381 0.00 7.09 32.85 4.00
1827 6498 0.179181 CGCCATCTGCATGTTGACAC 60.179 55.000 0.00 0.00 41.33 3.67
1877 6548 0.668096 CACCGCCGTAAAGTAGCACA 60.668 55.000 0.00 0.00 0.00 4.57
1890 6561 2.258286 GGTGACAAATGCACCGCC 59.742 61.111 9.97 0.00 45.50 6.13
1977 6652 8.864069 TGTCAACAACAATTCGAATGTAAATT 57.136 26.923 12.25 1.58 34.03 1.82
1978 6653 9.474920 AATGTCAACAACAATTCGAATGTAAAT 57.525 25.926 12.25 0.00 42.37 1.40
2101 6778 2.027192 GCAAAGTACACATCCTCCTCCA 60.027 50.000 0.00 0.00 0.00 3.86
2245 6949 7.141758 TGATTGTTATCTAAGATCCAAGGCT 57.858 36.000 0.00 0.00 0.00 4.58
2276 6980 7.759433 AGGCTTTTGTTATTTCCATATTTGTCG 59.241 33.333 0.00 0.00 0.00 4.35
2300 7004 0.173255 CAAAACATTGCCCCGCTAGG 59.827 55.000 0.00 0.00 37.24 3.02
2349 12271 1.674359 TGTCCACGCTCATTTGTGTT 58.326 45.000 0.00 0.00 34.28 3.32
2361 12292 1.459592 GTTTCCACGAAGATGTCCACG 59.540 52.381 0.00 0.00 0.00 4.94
2413 12344 0.610232 CCCCACCAAGAAGAAGGCTG 60.610 60.000 0.00 0.00 0.00 4.85
2414 12345 1.068352 ACCCCACCAAGAAGAAGGCT 61.068 55.000 0.00 0.00 0.00 4.58
2462 12393 6.231211 ACCTATGTACTGAACTTTTGAGGTG 58.769 40.000 0.00 0.00 32.42 4.00
2565 12496 3.450904 TGGAGTAGGCACTTAGTGGAAT 58.549 45.455 14.63 0.00 41.75 3.01
2592 12523 5.369409 TCATCATCTGCTTCCTCTTCATT 57.631 39.130 0.00 0.00 0.00 2.57
2751 12714 4.974645 AGAAGGTACCAGACACAATTGA 57.025 40.909 15.94 0.00 0.00 2.57
2897 12870 3.959478 GGATTACATCCTCGCGTGA 57.041 52.632 10.21 6.65 46.19 4.35
2990 12963 8.247666 AGCGAATAGGAAAACTATACTACCTT 57.752 34.615 0.00 0.00 41.54 3.50
3063 14959 2.744202 CGCCTGAAGCTTAGTTCAATGT 59.256 45.455 0.00 0.00 40.39 2.71
3071 14967 0.820871 ACCTCTCGCCTGAAGCTTAG 59.179 55.000 0.00 0.00 40.39 2.18
3097 15013 7.125536 CATGTAATGTGTGGTAGCATATGAG 57.874 40.000 6.97 0.00 40.20 2.90
3193 15112 4.697352 ACAGATTGTAGACACATGCCTTTC 59.303 41.667 0.00 0.00 33.76 2.62
3271 15190 7.094805 TGTCTTTTTGTGGCACTATTCATACTC 60.095 37.037 19.83 1.70 0.00 2.59
3301 15220 7.755591 ACGAACGTAAATAGTGTCATTCTAGA 58.244 34.615 0.00 0.00 0.00 2.43
3465 15388 6.286758 CGATTGGAAGGATATCCCATGATAG 58.713 44.000 18.56 3.79 38.82 2.08
3482 15431 1.131638 CCCATCTCCTTCCGATTGGA 58.868 55.000 0.00 0.00 44.61 3.53
3490 15439 1.704007 CCCTCCTGCCCATCTCCTTC 61.704 65.000 0.00 0.00 0.00 3.46
3508 15468 4.799564 TGGATTATTTTCACAACTGCCC 57.200 40.909 0.00 0.00 0.00 5.36
3568 15528 3.990469 GTCAGGTATCATCATTGCTACCG 59.010 47.826 1.58 0.00 45.34 4.02
3598 15558 1.473788 GGTGGGATCAATGGCAAATGC 60.474 52.381 0.00 0.00 41.14 3.56
3600 15560 2.250921 TGGTGGGATCAATGGCAAAT 57.749 45.000 0.00 0.00 0.00 2.32
3694 15657 8.621532 ACATGATAAGGATGCAAATAATACGT 57.378 30.769 0.00 0.00 0.00 3.57
3695 15658 9.973246 GTACATGATAAGGATGCAAATAATACG 57.027 33.333 0.00 0.00 0.00 3.06
3724 15687 4.270008 GTTGTGGCCTTCATTACTACCAT 58.730 43.478 3.32 0.00 0.00 3.55
3769 15737 7.769272 TTAAAAACTGGATTGCAAGAAACTG 57.231 32.000 4.94 1.95 0.00 3.16
3796 15764 7.686438 AACACAAACATCTATACATGCAGAA 57.314 32.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.