Multiple sequence alignment - TraesCS3D01G478100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G478100 chr3D 100.000 4070 0 0 1 4070 577870051 577874120 0.000000e+00 7516.0
1 TraesCS3D01G478100 chr3D 95.169 1180 29 9 1553 2727 578073769 578072613 0.000000e+00 1838.0
2 TraesCS3D01G478100 chr3D 92.909 691 30 4 2728 3402 578072579 578071892 0.000000e+00 987.0
3 TraesCS3D01G478100 chr3D 88.131 674 70 7 647 1311 577881659 577882331 0.000000e+00 793.0
4 TraesCS3D01G478100 chr3D 87.334 679 79 5 645 1317 578066635 578065958 0.000000e+00 771.0
5 TraesCS3D01G478100 chr3D 75.945 1455 258 51 1918 3341 578218989 578217596 0.000000e+00 664.0
6 TraesCS3D01G478100 chr3D 81.690 426 69 6 913 1332 578214018 578213596 3.010000e-91 346.0
7 TraesCS3D01G478100 chr3D 81.132 424 71 6 1750 2170 578180925 578180508 8.430000e-87 331.0
8 TraesCS3D01G478100 chr3D 79.175 509 76 22 2792 3294 578178211 578177727 3.920000e-85 326.0
9 TraesCS3D01G478100 chr3D 77.903 534 87 15 2620 3137 578105437 578104919 1.840000e-78 303.0
10 TraesCS3D01G478100 chr3D 77.339 481 82 17 701 1180 578182122 578181668 4.040000e-65 259.0
11 TraesCS3D01G478100 chr3D 81.481 270 43 3 3638 3902 578070823 578070556 8.860000e-52 215.0
12 TraesCS3D01G478100 chr3D 89.922 129 13 0 304 432 577881413 577881541 2.520000e-37 167.0
13 TraesCS3D01G478100 chr3D 76.452 310 51 15 1286 1584 578166463 578166165 9.110000e-32 148.0
14 TraesCS3D01G478100 chr3D 88.793 116 11 2 84 198 577881294 577881408 1.530000e-29 141.0
15 TraesCS3D01G478100 chr3D 84.270 89 9 4 1227 1311 577903576 577903663 9.380000e-12 82.4
16 TraesCS3D01G478100 chr3B 95.413 1417 63 1 1221 2637 771344292 771342878 0.000000e+00 2255.0
17 TraesCS3D01G478100 chr3B 94.872 546 19 6 644 1183 771344839 771344297 0.000000e+00 845.0
18 TraesCS3D01G478100 chr3B 89.173 665 49 7 2728 3384 771342808 771342159 0.000000e+00 808.0
19 TraesCS3D01G478100 chr3B 74.266 1873 337 70 1286 3121 771519476 771517712 0.000000e+00 654.0
20 TraesCS3D01G478100 chr3B 74.982 1379 280 47 1773 3137 771514418 771513091 3.530000e-160 575.0
21 TraesCS3D01G478100 chr3B 82.667 225 28 6 345 569 771327031 771326818 5.370000e-44 189.0
22 TraesCS3D01G478100 chr3B 83.908 87 11 2 1227 1310 770994547 770994461 3.370000e-11 80.5
23 TraesCS3D01G478100 chr3A 88.270 682 70 7 645 1317 713633122 713632442 0.000000e+00 808.0
24 TraesCS3D01G478100 chr3A 75.512 1368 262 51 1783 3137 713780958 713779651 1.620000e-168 603.0
25 TraesCS3D01G478100 chr3A 74.790 1547 288 55 1830 3340 713842230 713840750 1.620000e-168 603.0
26 TraesCS3D01G478100 chr3A 80.952 441 73 8 899 1332 713837191 713836755 5.040000e-89 339.0
27 TraesCS3D01G478100 chr3A 81.471 340 58 4 831 1167 713781917 713781580 1.440000e-69 274.0
28 TraesCS3D01G478100 chr3A 89.313 131 13 1 304 434 713633330 713633201 3.260000e-36 163.0
29 TraesCS3D01G478100 chr3A 84.043 94 12 2 1227 1317 713557579 713557486 2.020000e-13 87.9
30 TraesCS3D01G478100 chr2D 77.725 211 35 10 919 1122 194662673 194662878 7.150000e-23 119.0
31 TraesCS3D01G478100 chr2D 85.417 96 12 2 3635 3729 446640213 446640119 9.310000e-17 99.0
32 TraesCS3D01G478100 chr7D 85.455 110 16 0 3594 3703 29728631 29728522 9.240000e-22 115.0
33 TraesCS3D01G478100 chr7D 77.500 120 26 1 3599 3718 100989771 100989889 2.030000e-08 71.3
34 TraesCS3D01G478100 chr2A 83.065 124 21 0 3594 3717 539397482 539397605 3.320000e-21 113.0
35 TraesCS3D01G478100 chr2A 80.000 105 20 1 3599 3703 703084257 703084360 4.360000e-10 76.8
36 TraesCS3D01G478100 chr4A 79.675 123 25 0 3596 3718 602193070 602193192 5.600000e-14 89.8
37 TraesCS3D01G478100 chr1D 83.838 99 11 3 3635 3729 10418082 10418179 5.600000e-14 89.8
38 TraesCS3D01G478100 chr7A 76.510 149 28 6 3584 3729 298477058 298476914 1.570000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G478100 chr3D 577870051 577874120 4069 False 7516.000000 7516 100.000000 1 4070 1 chr3D.!!$F1 4069
1 TraesCS3D01G478100 chr3D 578065958 578073769 7811 True 952.750000 1838 89.223250 645 3902 4 chr3D.!!$R3 3257
2 TraesCS3D01G478100 chr3D 578213596 578218989 5393 True 505.000000 664 78.817500 913 3341 2 chr3D.!!$R5 2428
3 TraesCS3D01G478100 chr3D 577881294 577882331 1037 False 367.000000 793 88.948667 84 1311 3 chr3D.!!$F3 1227
4 TraesCS3D01G478100 chr3D 578177727 578182122 4395 True 305.333333 331 79.215333 701 3294 3 chr3D.!!$R4 2593
5 TraesCS3D01G478100 chr3D 578104919 578105437 518 True 303.000000 303 77.903000 2620 3137 1 chr3D.!!$R1 517
6 TraesCS3D01G478100 chr3B 771342159 771344839 2680 True 1302.666667 2255 93.152667 644 3384 3 chr3B.!!$R3 2740
7 TraesCS3D01G478100 chr3B 771513091 771519476 6385 True 614.500000 654 74.624000 1286 3137 2 chr3B.!!$R4 1851
8 TraesCS3D01G478100 chr3A 713632442 713633330 888 True 485.500000 808 88.791500 304 1317 2 chr3A.!!$R2 1013
9 TraesCS3D01G478100 chr3A 713836755 713842230 5475 True 471.000000 603 77.871000 899 3340 2 chr3A.!!$R4 2441
10 TraesCS3D01G478100 chr3A 713779651 713781917 2266 True 438.500000 603 78.491500 831 3137 2 chr3A.!!$R3 2306

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
255 257 0.028902 GGTGTCAACTTGCGAACCAC 59.971 55.0 0.00 0.0 0.00 4.16 F
571 573 0.034089 AACTGAAGTGGGGCATAGGC 60.034 55.0 0.00 0.0 40.13 3.93 F
573 575 0.184451 CTGAAGTGGGGCATAGGCAT 59.816 55.0 0.15 0.0 43.71 4.40 F
1189 1239 0.325933 CTGGTGCTGTTCTGGGATGA 59.674 55.0 0.00 0.0 0.00 2.92 F
1219 1272 0.395586 TGGTGTTCACAAGCCAAGCT 60.396 50.0 5.32 0.0 42.56 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1122 1170 0.179015 TTGTAACCTCAAAGCGGGCA 60.179 50.000 0.00 0.0 0.00 5.36 R
2101 2326 1.834263 AGATATCGCCCTCCCTAATGC 59.166 52.381 0.00 0.0 0.00 3.56 R
2132 2357 4.334552 TCTGCTTAGCATTTGTCATTGGA 58.665 39.130 7.58 0.0 38.13 3.53 R
2598 4522 1.406539 GGGTCAATGTAATGGCTGCTG 59.593 52.381 0.00 0.0 0.00 4.41 R
3125 5128 3.438781 ACACACTACCACACACAGTTTTG 59.561 43.478 0.00 0.0 0.00 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.438087 AGATGCCTGAAACATGAAGTTCG 59.562 43.478 0.00 0.00 40.26 3.95
24 25 1.266718 TGCCTGAAACATGAAGTTCGC 59.733 47.619 0.00 1.28 40.26 4.70
26 27 2.095059 GCCTGAAACATGAAGTTCGCAT 60.095 45.455 0.00 0.00 40.26 4.73
27 28 3.126858 GCCTGAAACATGAAGTTCGCATA 59.873 43.478 0.00 0.00 40.26 3.14
29 30 5.007626 GCCTGAAACATGAAGTTCGCATATA 59.992 40.000 0.00 0.00 40.26 0.86
31 32 7.073883 CCTGAAACATGAAGTTCGCATATATG 58.926 38.462 8.45 8.45 40.26 1.78
33 34 7.984391 TGAAACATGAAGTTCGCATATATGTT 58.016 30.769 14.14 9.87 40.26 2.71
34 35 7.909641 TGAAACATGAAGTTCGCATATATGTTG 59.090 33.333 14.14 7.54 40.26 3.33
37 38 8.607441 ACATGAAGTTCGCATATATGTTGTAT 57.393 30.769 14.14 0.00 0.00 2.29
53 54 6.701145 TGTTGTATTTTTCTACAAGCACCA 57.299 33.333 0.00 0.00 41.09 4.17
55 56 7.199766 TGTTGTATTTTTCTACAAGCACCAAG 58.800 34.615 0.00 0.00 41.09 3.61
56 57 6.952773 TGTATTTTTCTACAAGCACCAAGT 57.047 33.333 0.00 0.00 0.00 3.16
57 58 6.734137 TGTATTTTTCTACAAGCACCAAGTG 58.266 36.000 0.00 0.00 36.51 3.16
72 73 6.052840 CACCAAGTGCATGTACTATGAATC 57.947 41.667 17.28 0.00 0.00 2.52
77 78 8.314021 CCAAGTGCATGTACTATGAATCCTATA 58.686 37.037 17.28 0.00 0.00 1.31
78 79 9.881649 CAAGTGCATGTACTATGAATCCTATAT 57.118 33.333 17.28 0.00 0.00 0.86
106 108 2.729882 GCTTGAAGCATCAACTTTGCAG 59.270 45.455 13.09 0.00 40.59 4.41
117 119 5.808042 TCAACTTTGCAGATATTCAGAGC 57.192 39.130 0.00 0.00 0.00 4.09
118 120 5.494724 TCAACTTTGCAGATATTCAGAGCT 58.505 37.500 0.00 0.00 0.00 4.09
123 125 4.684484 TGCAGATATTCAGAGCTCACAT 57.316 40.909 17.77 7.01 0.00 3.21
128 130 6.346439 GCAGATATTCAGAGCTCACATAAACG 60.346 42.308 17.77 0.00 0.00 3.60
133 135 4.002982 TCAGAGCTCACATAAACGCAATT 58.997 39.130 17.77 0.00 0.00 2.32
166 168 6.560799 GCATTTGCATATGTCGCATAACTTTG 60.561 38.462 16.96 0.70 39.58 2.77
228 230 8.431020 CATGATTGTTAATAACATGCATCGAG 57.569 34.615 6.67 1.33 41.79 4.04
229 231 6.429624 TGATTGTTAATAACATGCATCGAGC 58.570 36.000 6.67 0.00 41.79 5.03
245 247 2.656560 GAGCATACTCGGTGTCAACT 57.343 50.000 0.00 0.00 32.04 3.16
246 248 2.960819 GAGCATACTCGGTGTCAACTT 58.039 47.619 0.00 0.00 32.04 2.66
247 249 2.668457 GAGCATACTCGGTGTCAACTTG 59.332 50.000 0.00 0.00 32.04 3.16
248 250 1.128692 GCATACTCGGTGTCAACTTGC 59.871 52.381 0.00 0.00 0.00 4.01
249 251 1.390123 CATACTCGGTGTCAACTTGCG 59.610 52.381 0.00 0.00 0.00 4.85
250 252 0.669619 TACTCGGTGTCAACTTGCGA 59.330 50.000 0.00 0.00 0.00 5.10
251 253 0.179094 ACTCGGTGTCAACTTGCGAA 60.179 50.000 0.00 0.00 0.00 4.70
252 254 0.232303 CTCGGTGTCAACTTGCGAAC 59.768 55.000 0.00 0.00 0.00 3.95
253 255 1.155424 TCGGTGTCAACTTGCGAACC 61.155 55.000 0.00 0.00 0.00 3.62
254 256 1.433053 CGGTGTCAACTTGCGAACCA 61.433 55.000 0.00 0.00 0.00 3.67
255 257 0.028902 GGTGTCAACTTGCGAACCAC 59.971 55.000 0.00 0.00 0.00 4.16
256 258 0.730265 GTGTCAACTTGCGAACCACA 59.270 50.000 0.00 0.00 0.00 4.17
257 259 1.131504 GTGTCAACTTGCGAACCACAA 59.868 47.619 0.00 0.00 0.00 3.33
258 260 1.813178 TGTCAACTTGCGAACCACAAA 59.187 42.857 0.00 0.00 0.00 2.83
259 261 2.425312 TGTCAACTTGCGAACCACAAAT 59.575 40.909 0.00 0.00 0.00 2.32
260 262 3.119316 TGTCAACTTGCGAACCACAAATT 60.119 39.130 0.00 0.00 0.00 1.82
261 263 3.862845 GTCAACTTGCGAACCACAAATTT 59.137 39.130 0.00 0.00 0.00 1.82
262 264 3.862267 TCAACTTGCGAACCACAAATTTG 59.138 39.130 16.67 16.67 0.00 2.32
263 265 3.791973 ACTTGCGAACCACAAATTTGA 57.208 38.095 24.64 0.00 0.00 2.69
264 266 4.320608 ACTTGCGAACCACAAATTTGAT 57.679 36.364 24.64 6.33 0.00 2.57
265 267 4.298332 ACTTGCGAACCACAAATTTGATC 58.702 39.130 24.64 14.36 0.00 2.92
266 268 3.998099 TGCGAACCACAAATTTGATCA 57.002 38.095 24.64 8.05 0.00 2.92
267 269 3.637432 TGCGAACCACAAATTTGATCAC 58.363 40.909 24.64 10.88 0.00 3.06
268 270 2.656422 GCGAACCACAAATTTGATCACG 59.344 45.455 24.64 20.04 0.00 4.35
269 271 3.233578 CGAACCACAAATTTGATCACGG 58.766 45.455 24.64 16.52 0.00 4.94
270 272 3.058570 CGAACCACAAATTTGATCACGGA 60.059 43.478 24.64 0.00 0.00 4.69
271 273 4.555708 CGAACCACAAATTTGATCACGGAA 60.556 41.667 24.64 0.00 0.00 4.30
272 274 4.927978 ACCACAAATTTGATCACGGAAA 57.072 36.364 24.64 0.00 0.00 3.13
273 275 5.467035 ACCACAAATTTGATCACGGAAAT 57.533 34.783 24.64 0.00 0.00 2.17
274 276 5.852827 ACCACAAATTTGATCACGGAAATT 58.147 33.333 24.64 0.00 34.04 1.82
275 277 5.925969 ACCACAAATTTGATCACGGAAATTC 59.074 36.000 24.64 0.00 31.93 2.17
276 278 5.060816 CCACAAATTTGATCACGGAAATTCG 59.939 40.000 24.64 0.00 31.93 3.34
277 279 5.855925 CACAAATTTGATCACGGAAATTCGA 59.144 36.000 24.64 0.00 31.93 3.71
278 280 5.856455 ACAAATTTGATCACGGAAATTCGAC 59.144 36.000 24.64 0.00 31.93 4.20
279 281 5.880054 AATTTGATCACGGAAATTCGACT 57.120 34.783 0.00 0.00 27.72 4.18
280 282 5.880054 ATTTGATCACGGAAATTCGACTT 57.120 34.783 0.00 0.00 0.00 3.01
281 283 4.921470 TTGATCACGGAAATTCGACTTC 57.079 40.909 0.00 0.00 0.00 3.01
282 284 3.920446 TGATCACGGAAATTCGACTTCA 58.080 40.909 8.32 0.00 0.00 3.02
283 285 3.926527 TGATCACGGAAATTCGACTTCAG 59.073 43.478 8.32 6.84 0.00 3.02
284 286 2.066262 TCACGGAAATTCGACTTCAGC 58.934 47.619 8.32 0.00 0.00 4.26
285 287 1.798223 CACGGAAATTCGACTTCAGCA 59.202 47.619 8.32 0.00 0.00 4.41
286 288 2.069273 ACGGAAATTCGACTTCAGCAG 58.931 47.619 8.32 1.02 0.00 4.24
287 289 1.394917 CGGAAATTCGACTTCAGCAGG 59.605 52.381 8.32 0.00 0.00 4.85
288 290 1.131315 GGAAATTCGACTTCAGCAGGC 59.869 52.381 8.32 0.00 0.00 4.85
289 291 1.806542 GAAATTCGACTTCAGCAGGCA 59.193 47.619 2.28 0.00 0.00 4.75
290 292 1.160137 AATTCGACTTCAGCAGGCAC 58.840 50.000 0.00 0.00 0.00 5.01
291 293 0.322975 ATTCGACTTCAGCAGGCACT 59.677 50.000 0.00 0.00 43.88 4.40
292 294 0.319900 TTCGACTTCAGCAGGCACTC 60.320 55.000 0.00 0.00 34.60 3.51
293 295 1.005748 CGACTTCAGCAGGCACTCA 60.006 57.895 0.00 0.00 34.60 3.41
294 296 0.390866 CGACTTCAGCAGGCACTCAT 60.391 55.000 0.00 0.00 34.60 2.90
295 297 1.367659 GACTTCAGCAGGCACTCATC 58.632 55.000 0.00 0.00 34.60 2.92
296 298 0.982704 ACTTCAGCAGGCACTCATCT 59.017 50.000 0.00 0.00 34.60 2.90
297 299 1.350351 ACTTCAGCAGGCACTCATCTT 59.650 47.619 0.00 0.00 34.60 2.40
298 300 2.224719 ACTTCAGCAGGCACTCATCTTT 60.225 45.455 0.00 0.00 34.60 2.52
299 301 3.008375 ACTTCAGCAGGCACTCATCTTTA 59.992 43.478 0.00 0.00 34.60 1.85
300 302 2.977914 TCAGCAGGCACTCATCTTTAC 58.022 47.619 0.00 0.00 34.60 2.01
301 303 2.568956 TCAGCAGGCACTCATCTTTACT 59.431 45.455 0.00 0.00 34.60 2.24
302 304 3.008375 TCAGCAGGCACTCATCTTTACTT 59.992 43.478 0.00 0.00 34.60 2.24
312 314 7.360776 GGCACTCATCTTTACTTTTCTTCTCAG 60.361 40.741 0.00 0.00 0.00 3.35
327 329 8.746052 TTTCTTCTCAGAACATTTAGTCCAAA 57.254 30.769 0.00 0.00 38.86 3.28
336 338 9.743057 CAGAACATTTAGTCCAAATACAAAACA 57.257 29.630 0.00 0.00 34.99 2.83
355 357 5.950544 AACATTCAGTACTAGCACCCATA 57.049 39.130 0.00 0.00 0.00 2.74
363 365 2.821437 ACTAGCACCCATAGTCACACT 58.179 47.619 0.00 0.00 0.00 3.55
396 398 3.653009 GCACTGAGCGCACAAGCA 61.653 61.111 21.13 6.84 42.27 3.91
416 418 1.142936 TGCATCTGCTCATACCCCAT 58.857 50.000 3.53 0.00 42.66 4.00
417 419 1.202842 TGCATCTGCTCATACCCCATG 60.203 52.381 3.53 0.00 42.66 3.66
438 440 4.997565 TGTTTGAGCAACAGAAAGAAAGG 58.002 39.130 0.00 0.00 40.71 3.11
439 441 3.715628 TTGAGCAACAGAAAGAAAGGC 57.284 42.857 0.00 0.00 0.00 4.35
440 442 2.653726 TGAGCAACAGAAAGAAAGGCA 58.346 42.857 0.00 0.00 0.00 4.75
441 443 2.620115 TGAGCAACAGAAAGAAAGGCAG 59.380 45.455 0.00 0.00 0.00 4.85
442 444 2.880890 GAGCAACAGAAAGAAAGGCAGA 59.119 45.455 0.00 0.00 0.00 4.26
443 445 3.290710 AGCAACAGAAAGAAAGGCAGAA 58.709 40.909 0.00 0.00 0.00 3.02
444 446 3.317430 AGCAACAGAAAGAAAGGCAGAAG 59.683 43.478 0.00 0.00 0.00 2.85
445 447 3.551659 GCAACAGAAAGAAAGGCAGAAGG 60.552 47.826 0.00 0.00 0.00 3.46
446 448 2.868899 ACAGAAAGAAAGGCAGAAGGG 58.131 47.619 0.00 0.00 0.00 3.95
447 449 2.165998 CAGAAAGAAAGGCAGAAGGGG 58.834 52.381 0.00 0.00 0.00 4.79
448 450 1.076187 AGAAAGAAAGGCAGAAGGGGG 59.924 52.381 0.00 0.00 0.00 5.40
474 476 8.892723 GGAAATATCCCAAAATTTCAAATGTCC 58.107 33.333 9.31 0.00 41.70 4.02
475 477 8.806429 AAATATCCCAAAATTTCAAATGTCCC 57.194 30.769 0.00 0.00 0.00 4.46
476 478 5.839517 ATCCCAAAATTTCAAATGTCCCA 57.160 34.783 0.00 0.00 0.00 4.37
477 479 5.839517 TCCCAAAATTTCAAATGTCCCAT 57.160 34.783 0.00 0.00 0.00 4.00
478 480 6.942163 TCCCAAAATTTCAAATGTCCCATA 57.058 33.333 0.00 0.00 0.00 2.74
479 481 7.507797 TCCCAAAATTTCAAATGTCCCATAT 57.492 32.000 0.00 0.00 0.00 1.78
480 482 8.615360 TCCCAAAATTTCAAATGTCCCATATA 57.385 30.769 0.00 0.00 0.00 0.86
481 483 8.703743 TCCCAAAATTTCAAATGTCCCATATAG 58.296 33.333 0.00 0.00 0.00 1.31
482 484 7.933033 CCCAAAATTTCAAATGTCCCATATAGG 59.067 37.037 0.00 0.00 37.03 2.57
483 485 7.442062 CCAAAATTTCAAATGTCCCATATAGGC 59.558 37.037 0.00 0.00 35.39 3.93
484 486 7.673641 AAATTTCAAATGTCCCATATAGGCA 57.326 32.000 0.00 0.00 35.39 4.75
485 487 7.673641 AATTTCAAATGTCCCATATAGGCAA 57.326 32.000 0.00 0.00 35.39 4.52
486 488 7.860649 ATTTCAAATGTCCCATATAGGCAAT 57.139 32.000 0.00 0.00 35.39 3.56
487 489 8.954834 ATTTCAAATGTCCCATATAGGCAATA 57.045 30.769 0.00 0.00 35.39 1.90
488 490 8.954834 TTTCAAATGTCCCATATAGGCAATAT 57.045 30.769 0.00 0.00 35.39 1.28
489 491 7.943079 TCAAATGTCCCATATAGGCAATATG 57.057 36.000 10.05 10.05 44.89 1.78
490 492 6.377996 TCAAATGTCCCATATAGGCAATATGC 59.622 38.462 11.11 0.00 44.23 3.14
491 493 5.722172 ATGTCCCATATAGGCAATATGCT 57.278 39.130 11.11 0.00 44.23 3.79
492 494 5.519183 TGTCCCATATAGGCAATATGCTT 57.481 39.130 11.11 0.00 44.23 3.91
493 495 5.891198 TGTCCCATATAGGCAATATGCTTT 58.109 37.500 11.11 0.00 44.23 3.51
494 496 6.314120 TGTCCCATATAGGCAATATGCTTTT 58.686 36.000 11.11 0.00 44.23 2.27
495 497 6.434028 TGTCCCATATAGGCAATATGCTTTTC 59.566 38.462 11.11 3.39 44.23 2.29
496 498 6.434028 GTCCCATATAGGCAATATGCTTTTCA 59.566 38.462 11.11 0.00 44.23 2.69
497 499 6.434028 TCCCATATAGGCAATATGCTTTTCAC 59.566 38.462 11.11 0.00 44.23 3.18
498 500 6.209192 CCCATATAGGCAATATGCTTTTCACA 59.791 38.462 11.11 0.00 44.23 3.58
499 501 7.093640 CCCATATAGGCAATATGCTTTTCACAT 60.094 37.037 11.11 0.00 44.23 3.21
500 502 7.758076 CCATATAGGCAATATGCTTTTCACATG 59.242 37.037 11.11 0.00 44.23 3.21
501 503 4.395959 AGGCAATATGCTTTTCACATGG 57.604 40.909 0.00 0.00 44.28 3.66
502 504 3.133362 AGGCAATATGCTTTTCACATGGG 59.867 43.478 0.00 0.00 44.28 4.00
503 505 3.132646 GGCAATATGCTTTTCACATGGGA 59.867 43.478 0.00 0.00 44.28 4.37
504 506 4.114794 GCAATATGCTTTTCACATGGGAC 58.885 43.478 0.00 0.00 40.96 4.46
505 507 4.381825 GCAATATGCTTTTCACATGGGACA 60.382 41.667 0.00 0.00 41.90 4.02
506 508 5.682990 GCAATATGCTTTTCACATGGGACAT 60.683 40.000 0.00 0.00 41.90 3.06
507 509 7.127175 GCAATATGCTTTTCACATGGGACATT 61.127 38.462 0.00 0.00 41.90 2.71
508 510 8.538770 GCAATATGCTTTTCACATGGGACATTT 61.539 37.037 0.00 0.00 41.90 2.32
536 538 9.678941 GAAACTTAAATACAAAGACAAGAAGGG 57.321 33.333 0.00 0.00 0.00 3.95
537 539 7.215719 ACTTAAATACAAAGACAAGAAGGGC 57.784 36.000 0.00 0.00 0.00 5.19
538 540 6.775629 ACTTAAATACAAAGACAAGAAGGGCA 59.224 34.615 0.00 0.00 0.00 5.36
539 541 7.451566 ACTTAAATACAAAGACAAGAAGGGCAT 59.548 33.333 0.00 0.00 0.00 4.40
540 542 8.871629 TTAAATACAAAGACAAGAAGGGCATA 57.128 30.769 0.00 0.00 0.00 3.14
541 543 7.775053 AAATACAAAGACAAGAAGGGCATAA 57.225 32.000 0.00 0.00 0.00 1.90
542 544 7.396540 AATACAAAGACAAGAAGGGCATAAG 57.603 36.000 0.00 0.00 0.00 1.73
543 545 4.985538 ACAAAGACAAGAAGGGCATAAGA 58.014 39.130 0.00 0.00 0.00 2.10
544 546 5.574188 ACAAAGACAAGAAGGGCATAAGAT 58.426 37.500 0.00 0.00 0.00 2.40
545 547 5.649831 ACAAAGACAAGAAGGGCATAAGATC 59.350 40.000 0.00 0.00 0.00 2.75
546 548 5.441718 AAGACAAGAAGGGCATAAGATCA 57.558 39.130 0.00 0.00 0.00 2.92
547 549 5.033589 AGACAAGAAGGGCATAAGATCAG 57.966 43.478 0.00 0.00 0.00 2.90
548 550 4.472833 AGACAAGAAGGGCATAAGATCAGT 59.527 41.667 0.00 0.00 0.00 3.41
549 551 4.521146 ACAAGAAGGGCATAAGATCAGTG 58.479 43.478 0.00 0.00 0.00 3.66
550 552 4.018960 ACAAGAAGGGCATAAGATCAGTGT 60.019 41.667 0.00 0.00 0.00 3.55
551 553 4.414337 AGAAGGGCATAAGATCAGTGTC 57.586 45.455 0.00 0.00 0.00 3.67
552 554 3.776969 AGAAGGGCATAAGATCAGTGTCA 59.223 43.478 0.00 0.00 0.00 3.58
553 555 4.225942 AGAAGGGCATAAGATCAGTGTCAA 59.774 41.667 0.00 0.00 0.00 3.18
554 556 3.878778 AGGGCATAAGATCAGTGTCAAC 58.121 45.455 0.00 0.00 0.00 3.18
555 557 3.521126 AGGGCATAAGATCAGTGTCAACT 59.479 43.478 0.00 0.00 36.98 3.16
565 567 0.179018 AGTGTCAACTGAAGTGGGGC 60.179 55.000 0.00 0.00 34.48 5.80
566 568 0.465460 GTGTCAACTGAAGTGGGGCA 60.465 55.000 0.00 0.00 0.00 5.36
567 569 0.478072 TGTCAACTGAAGTGGGGCAT 59.522 50.000 0.00 0.00 0.00 4.40
568 570 1.702401 TGTCAACTGAAGTGGGGCATA 59.298 47.619 0.00 0.00 0.00 3.14
569 571 2.290260 TGTCAACTGAAGTGGGGCATAG 60.290 50.000 0.00 0.00 0.00 2.23
570 572 1.281867 TCAACTGAAGTGGGGCATAGG 59.718 52.381 0.00 0.00 0.00 2.57
571 573 0.034089 AACTGAAGTGGGGCATAGGC 60.034 55.000 0.00 0.00 40.13 3.93
572 574 1.207488 ACTGAAGTGGGGCATAGGCA 61.207 55.000 0.15 0.00 43.71 4.75
573 575 0.184451 CTGAAGTGGGGCATAGGCAT 59.816 55.000 0.15 0.00 43.71 4.40
577 579 1.746157 AGTGGGGCATAGGCATATGA 58.254 50.000 21.91 0.00 41.22 2.15
578 580 2.281966 AGTGGGGCATAGGCATATGAT 58.718 47.619 21.91 0.00 41.22 2.45
586 588 6.073314 GGGCATAGGCATATGATCCAAATAT 58.927 40.000 21.91 0.00 41.22 1.28
593 595 5.221382 GGCATATGATCCAAATATCATGGGC 60.221 44.000 6.97 10.98 44.43 5.36
594 596 5.361571 GCATATGATCCAAATATCATGGGCA 59.638 40.000 6.97 6.92 44.43 5.36
596 598 7.231925 GCATATGATCCAAATATCATGGGCATA 59.768 37.037 6.97 16.80 44.43 3.14
597 599 9.309224 CATATGATCCAAATATCATGGGCATAT 57.691 33.333 18.43 18.43 44.43 1.78
598 600 7.597288 ATGATCCAAATATCATGGGCATATG 57.403 36.000 0.00 0.00 43.39 1.78
599 601 6.733509 TGATCCAAATATCATGGGCATATGA 58.266 36.000 6.97 6.20 41.00 2.15
600 602 7.183460 TGATCCAAATATCATGGGCATATGAA 58.817 34.615 6.97 0.00 40.21 2.57
607 613 5.733620 ATCATGGGCATATGAACAAATCC 57.266 39.130 6.97 0.00 40.21 3.01
610 616 2.247111 TGGGCATATGAACAAATCCCCT 59.753 45.455 6.97 0.00 32.48 4.79
611 617 2.893489 GGGCATATGAACAAATCCCCTC 59.107 50.000 6.97 0.00 0.00 4.30
612 618 3.565307 GGCATATGAACAAATCCCCTCA 58.435 45.455 6.97 0.00 0.00 3.86
637 643 6.420913 AATATTTAGGGCGTCATACTGACT 57.579 37.500 5.79 0.00 44.85 3.41
638 644 3.520290 TTTAGGGCGTCATACTGACTG 57.480 47.619 5.79 1.41 44.85 3.51
639 645 2.139323 TAGGGCGTCATACTGACTGT 57.861 50.000 5.79 0.00 44.85 3.55
640 646 0.532573 AGGGCGTCATACTGACTGTG 59.467 55.000 5.79 0.00 44.85 3.66
650 681 1.982660 ACTGACTGTGAACGGAGAGA 58.017 50.000 0.00 0.00 0.00 3.10
704 736 8.362639 GGGAATCATTAGTTATGCAATCACATT 58.637 33.333 0.00 0.00 34.06 2.71
762 797 0.742505 AATCCATGTGAATGCTGCCG 59.257 50.000 0.00 0.00 0.00 5.69
870 917 3.072330 TCAGTGGGCTGTCTGATGTTTAA 59.928 43.478 0.00 0.00 43.05 1.52
977 1025 4.164988 AGGAAAGATATGGGGAACAGTCAG 59.835 45.833 0.00 0.00 0.00 3.51
984 1032 3.254093 TGGGGAACAGTCAGACTAGAA 57.746 47.619 1.67 0.00 0.00 2.10
988 1036 3.579151 GGGAACAGTCAGACTAGAAACCT 59.421 47.826 1.67 0.00 0.00 3.50
991 1039 5.461032 AACAGTCAGACTAGAAACCTCTG 57.539 43.478 1.67 0.00 33.94 3.35
1002 1050 6.644347 ACTAGAAACCTCTGATGGTAACATG 58.356 40.000 0.00 0.00 45.19 3.21
1020 1068 5.426689 ACATGTATGATGTTGGAGTCACT 57.573 39.130 0.00 0.00 0.00 3.41
1041 1089 7.062839 GTCACTGAGAGTATGAACAGAACAATC 59.937 40.741 0.00 0.00 34.88 2.67
1057 1105 4.647564 ACAATCTTGAAGTCTGGATGGT 57.352 40.909 0.00 0.00 0.00 3.55
1092 1140 7.325660 TGATGCCAATCAAATAGAAGAGAAC 57.674 36.000 0.00 0.00 39.92 3.01
1110 1158 8.777865 AAGAGAACTATTCATTGATGTTTCGA 57.222 30.769 0.00 0.00 0.00 3.71
1122 1170 7.339212 TCATTGATGTTTCGATACCTTGGAAAT 59.661 33.333 3.47 0.00 32.85 2.17
1132 1180 0.390209 CCTTGGAAATGCCCGCTTTG 60.390 55.000 0.00 0.00 34.97 2.77
1183 1233 3.055530 AGAGAATACCTGGTGCTGTTCTG 60.056 47.826 10.23 0.00 0.00 3.02
1189 1239 0.325933 CTGGTGCTGTTCTGGGATGA 59.674 55.000 0.00 0.00 0.00 2.92
1197 1247 2.686915 CTGTTCTGGGATGAGAAATGCC 59.313 50.000 0.00 0.00 33.73 4.40
1198 1248 2.309755 TGTTCTGGGATGAGAAATGCCT 59.690 45.455 0.00 0.00 33.73 4.75
1201 1251 2.172082 TCTGGGATGAGAAATGCCTCTG 59.828 50.000 0.00 0.00 34.38 3.35
1205 1255 2.356535 GGATGAGAAATGCCTCTGGTGT 60.357 50.000 0.00 0.00 34.38 4.16
1209 1259 2.485814 GAGAAATGCCTCTGGTGTTCAC 59.514 50.000 0.00 0.00 0.00 3.18
1212 1265 1.901591 ATGCCTCTGGTGTTCACAAG 58.098 50.000 5.32 3.26 0.00 3.16
1219 1272 0.395586 TGGTGTTCACAAGCCAAGCT 60.396 50.000 5.32 0.00 42.56 3.74
1655 1721 5.168569 CGTTTTGTATGAACTGCTCTCCTA 58.831 41.667 0.00 0.00 0.00 2.94
1765 1833 5.922544 GGATATGCTTGGACAAAATGCATAC 59.077 40.000 15.29 11.05 45.38 2.39
1836 1904 5.059404 TGTTAGAGCAATTTAGCCTTTGC 57.941 39.130 0.00 0.00 46.68 3.68
2598 4522 2.549754 CAAGATCAATGTATGTCGGGGC 59.450 50.000 0.00 0.00 0.00 5.80
3125 5128 4.320608 TGATTTTGAACTTTGGGACTGC 57.679 40.909 0.00 0.00 0.00 4.40
3169 5181 0.998928 TATCTGCAAAAGGGGGAGCA 59.001 50.000 0.00 0.00 35.43 4.26
3275 5324 5.887754 AGTAATTTGGAGGGCTCAAGTTTA 58.112 37.500 0.00 0.00 0.00 2.01
3296 5345 1.032014 ACAACCTGTGATGTGTTGCC 58.968 50.000 0.00 0.00 42.33 4.52
3353 5403 1.208052 GGTTCTCTCCAGCAGCATACA 59.792 52.381 0.00 0.00 0.00 2.29
3364 5414 3.002042 CAGCAGCATACAAGATACTGTGC 59.998 47.826 0.00 0.00 0.00 4.57
3389 5439 2.283604 AAACCGGGAATGGGTGCC 60.284 61.111 6.32 0.00 37.96 5.01
3390 5440 3.153629 AAACCGGGAATGGGTGCCA 62.154 57.895 6.32 0.00 37.68 4.92
3397 5447 1.619432 GGGAATGGGTGCCATGAAAGA 60.619 52.381 0.00 0.00 44.40 2.52
3398 5448 2.178580 GGAATGGGTGCCATGAAAGAA 58.821 47.619 0.00 0.00 44.40 2.52
3399 5449 2.767960 GGAATGGGTGCCATGAAAGAAT 59.232 45.455 0.00 0.00 44.40 2.40
3400 5450 3.198417 GGAATGGGTGCCATGAAAGAATT 59.802 43.478 0.00 0.00 44.40 2.17
3401 5451 3.899052 ATGGGTGCCATGAAAGAATTG 57.101 42.857 0.00 0.00 43.39 2.32
3402 5452 2.607499 TGGGTGCCATGAAAGAATTGT 58.393 42.857 0.00 0.00 0.00 2.71
3403 5453 2.299582 TGGGTGCCATGAAAGAATTGTG 59.700 45.455 0.00 0.00 0.00 3.33
3404 5454 2.354003 GGGTGCCATGAAAGAATTGTGG 60.354 50.000 0.00 0.00 0.00 4.17
3431 5481 7.763172 CACTAGAGTGCCTGTATCTTTAAAG 57.237 40.000 9.04 9.04 39.39 1.85
3432 5482 7.324178 CACTAGAGTGCCTGTATCTTTAAAGT 58.676 38.462 14.74 5.49 39.39 2.66
3433 5483 8.467598 CACTAGAGTGCCTGTATCTTTAAAGTA 58.532 37.037 14.74 4.58 39.39 2.24
3434 5484 9.203163 ACTAGAGTGCCTGTATCTTTAAAGTAT 57.797 33.333 14.74 9.54 0.00 2.12
3435 5485 9.469807 CTAGAGTGCCTGTATCTTTAAAGTATG 57.530 37.037 14.74 3.11 0.00 2.39
3436 5486 8.079211 AGAGTGCCTGTATCTTTAAAGTATGA 57.921 34.615 14.74 0.00 0.00 2.15
3437 5487 7.982354 AGAGTGCCTGTATCTTTAAAGTATGAC 59.018 37.037 14.74 9.14 0.00 3.06
3438 5488 7.852263 AGTGCCTGTATCTTTAAAGTATGACT 58.148 34.615 14.74 5.28 0.00 3.41
3439 5489 7.982354 AGTGCCTGTATCTTTAAAGTATGACTC 59.018 37.037 14.74 2.79 0.00 3.36
3440 5490 7.982354 GTGCCTGTATCTTTAAAGTATGACTCT 59.018 37.037 14.74 0.00 0.00 3.24
3441 5491 9.197306 TGCCTGTATCTTTAAAGTATGACTCTA 57.803 33.333 14.74 0.00 0.00 2.43
3470 5520 4.001618 TCAACCAATTGAGACGTGATCA 57.998 40.909 7.12 0.00 40.01 2.92
3475 5525 3.314357 CCAATTGAGACGTGATCATGCAT 59.686 43.478 15.01 3.48 0.00 3.96
3478 5528 1.292992 GAGACGTGATCATGCATGCA 58.707 50.000 25.04 25.04 0.00 3.96
3479 5529 1.260825 GAGACGTGATCATGCATGCAG 59.739 52.381 26.69 17.32 0.00 4.41
3480 5530 0.306840 GACGTGATCATGCATGCAGG 59.693 55.000 25.78 25.78 0.00 4.85
3481 5531 1.008881 CGTGATCATGCATGCAGGC 60.009 57.895 26.78 18.05 0.00 4.85
3482 5532 1.008881 GTGATCATGCATGCAGGCG 60.009 57.895 26.78 16.72 36.28 5.52
3491 5541 1.202510 TGCATGCAGGCGAAAAAGTTT 60.203 42.857 18.46 0.00 36.28 2.66
3497 5547 3.862845 TGCAGGCGAAAAAGTTTCTTTTC 59.137 39.130 7.73 2.54 40.43 2.29
3498 5548 3.862845 GCAGGCGAAAAAGTTTCTTTTCA 59.137 39.130 7.73 0.00 42.82 2.69
3499 5549 4.026558 GCAGGCGAAAAAGTTTCTTTTCAG 60.027 41.667 7.73 6.61 42.82 3.02
3500 5550 4.026558 CAGGCGAAAAAGTTTCTTTTCAGC 60.027 41.667 17.52 17.52 42.82 4.26
3501 5551 3.862845 GGCGAAAAAGTTTCTTTTCAGCA 59.137 39.130 22.38 0.00 42.82 4.41
3503 5553 5.484085 GCGAAAAAGTTTCTTTTCAGCAAG 58.516 37.500 19.24 7.60 42.82 4.01
3504 5554 5.500771 GCGAAAAAGTTTCTTTTCAGCAAGG 60.501 40.000 19.24 2.84 42.82 3.61
3505 5555 5.804979 CGAAAAAGTTTCTTTTCAGCAAGGA 59.195 36.000 7.73 0.00 42.82 3.36
3507 5557 7.515684 CGAAAAAGTTTCTTTTCAGCAAGGATG 60.516 37.037 7.73 0.00 42.82 3.51
3508 5558 7.727636 GAAAAAGTTTCTTTTCAGCAAGGATGC 60.728 37.037 7.73 0.00 42.92 3.91
3523 5573 3.515059 ATGCAGGCATCAATCAGCT 57.485 47.368 0.00 0.00 29.42 4.24
3524 5574 2.651382 ATGCAGGCATCAATCAGCTA 57.349 45.000 0.00 0.00 29.42 3.32
3525 5575 2.651382 TGCAGGCATCAATCAGCTAT 57.349 45.000 0.00 0.00 0.00 2.97
3527 5577 4.296621 TGCAGGCATCAATCAGCTATAT 57.703 40.909 0.00 0.00 0.00 0.86
3529 5579 5.425630 TGCAGGCATCAATCAGCTATATAG 58.574 41.667 5.30 5.30 0.00 1.31
3531 5581 9.693298 ATGCAGGCATCAATCAGCTATATAGCA 62.693 40.741 31.22 15.89 41.20 3.49
3546 5596 3.710209 ATAGCATATCCAGCAGAACCC 57.290 47.619 0.00 0.00 0.00 4.11
3547 5597 1.516110 AGCATATCCAGCAGAACCCT 58.484 50.000 0.00 0.00 0.00 4.34
3548 5598 1.142465 AGCATATCCAGCAGAACCCTG 59.858 52.381 0.00 0.00 43.22 4.45
3549 5599 1.141657 GCATATCCAGCAGAACCCTGA 59.858 52.381 0.00 0.00 43.02 3.86
3550 5600 2.421952 GCATATCCAGCAGAACCCTGAA 60.422 50.000 0.00 0.00 43.02 3.02
3551 5601 3.889815 CATATCCAGCAGAACCCTGAAA 58.110 45.455 0.00 0.00 43.02 2.69
3552 5602 2.206576 ATCCAGCAGAACCCTGAAAC 57.793 50.000 0.00 0.00 43.02 2.78
3553 5603 0.843309 TCCAGCAGAACCCTGAAACA 59.157 50.000 0.00 0.00 43.02 2.83
3556 5606 2.301346 CAGCAGAACCCTGAAACAGTT 58.699 47.619 0.00 0.00 43.02 3.16
3557 5607 2.689983 CAGCAGAACCCTGAAACAGTTT 59.310 45.455 0.00 0.00 43.02 2.66
3558 5608 3.131046 CAGCAGAACCCTGAAACAGTTTT 59.869 43.478 0.00 0.00 43.02 2.43
3559 5609 3.131046 AGCAGAACCCTGAAACAGTTTTG 59.869 43.478 0.00 0.00 43.02 2.44
3560 5610 3.130340 GCAGAACCCTGAAACAGTTTTGA 59.870 43.478 0.00 0.00 43.02 2.69
3561 5611 4.734695 GCAGAACCCTGAAACAGTTTTGAG 60.735 45.833 0.00 0.00 43.02 3.02
3565 5615 1.341209 CCTGAAACAGTTTTGAGGGGC 59.659 52.381 13.83 0.00 41.22 5.80
3567 5617 2.695147 CTGAAACAGTTTTGAGGGGCTT 59.305 45.455 0.00 0.00 0.00 4.35
3568 5618 3.103742 TGAAACAGTTTTGAGGGGCTTT 58.896 40.909 0.00 0.00 0.00 3.51
3570 5620 1.413118 ACAGTTTTGAGGGGCTTTGG 58.587 50.000 0.00 0.00 0.00 3.28
3571 5621 1.342975 ACAGTTTTGAGGGGCTTTGGT 60.343 47.619 0.00 0.00 0.00 3.67
3572 5622 1.069049 CAGTTTTGAGGGGCTTTGGTG 59.931 52.381 0.00 0.00 0.00 4.17
3573 5623 1.063266 AGTTTTGAGGGGCTTTGGTGA 60.063 47.619 0.00 0.00 0.00 4.02
3574 5624 1.341209 GTTTTGAGGGGCTTTGGTGAG 59.659 52.381 0.00 0.00 0.00 3.51
3575 5625 0.178964 TTTGAGGGGCTTTGGTGAGG 60.179 55.000 0.00 0.00 0.00 3.86
3577 5627 3.268032 AGGGGCTTTGGTGAGGGG 61.268 66.667 0.00 0.00 0.00 4.79
3578 5628 4.382541 GGGGCTTTGGTGAGGGGG 62.383 72.222 0.00 0.00 0.00 5.40
3580 5630 4.299796 GGCTTTGGTGAGGGGGCA 62.300 66.667 0.00 0.00 0.00 5.36
3581 5631 2.037847 GCTTTGGTGAGGGGGCAT 59.962 61.111 0.00 0.00 0.00 4.40
3582 5632 1.610379 GCTTTGGTGAGGGGGCATT 60.610 57.895 0.00 0.00 0.00 3.56
3583 5633 1.891722 GCTTTGGTGAGGGGGCATTG 61.892 60.000 0.00 0.00 0.00 2.82
3584 5634 0.251742 CTTTGGTGAGGGGGCATTGA 60.252 55.000 0.00 0.00 0.00 2.57
3586 5636 1.724148 TTGGTGAGGGGGCATTGACA 61.724 55.000 0.00 0.00 0.00 3.58
3587 5637 1.076549 GGTGAGGGGGCATTGACAA 59.923 57.895 0.00 0.00 0.00 3.18
3588 5638 0.967380 GGTGAGGGGGCATTGACAAG 60.967 60.000 0.00 0.00 0.00 3.16
3589 5639 0.967380 GTGAGGGGGCATTGACAAGG 60.967 60.000 0.00 0.00 0.00 3.61
3596 5646 1.659794 GCATTGACAAGGCCACGTT 59.340 52.632 13.74 0.00 30.71 3.99
3597 5647 0.664166 GCATTGACAAGGCCACGTTG 60.664 55.000 13.74 3.08 35.67 4.10
3598 5648 0.039256 CATTGACAAGGCCACGTTGG 60.039 55.000 5.01 0.00 41.55 3.77
3608 5658 4.072088 CACGTTGGCGGCTCGTTC 62.072 66.667 23.64 5.10 43.45 3.95
3609 5659 4.295119 ACGTTGGCGGCTCGTTCT 62.295 61.111 21.51 5.31 43.45 3.01
3611 5661 2.357034 GTTGGCGGCTCGTTCTGA 60.357 61.111 11.43 0.00 0.00 3.27
3612 5662 2.357034 TTGGCGGCTCGTTCTGAC 60.357 61.111 11.43 0.00 0.00 3.51
3632 5682 2.050351 CACGCCTCGTCGTTCAGT 60.050 61.111 0.00 0.00 41.21 3.41
3634 5684 0.793478 CACGCCTCGTCGTTCAGTAG 60.793 60.000 0.00 0.00 41.21 2.57
3635 5685 1.233285 ACGCCTCGTCGTTCAGTAGT 61.233 55.000 0.00 0.00 40.07 2.73
3636 5686 0.520827 CGCCTCGTCGTTCAGTAGTC 60.521 60.000 0.00 0.00 0.00 2.59
3684 6627 5.557891 ATGCTTGAGATGCTTTGTACTTC 57.442 39.130 0.00 0.00 0.00 3.01
3687 6630 2.346803 TGAGATGCTTTGTACTTCCGC 58.653 47.619 0.00 0.00 0.00 5.54
3689 6632 3.194755 TGAGATGCTTTGTACTTCCGCTA 59.805 43.478 0.00 0.00 0.00 4.26
3693 6636 3.468770 TGCTTTGTACTTCCGCTAAACA 58.531 40.909 0.00 0.00 0.00 2.83
3698 6641 7.079475 GCTTTGTACTTCCGCTAAACATTTAA 58.921 34.615 0.00 0.00 0.00 1.52
3730 6673 9.826574 ATCTTACCCTTTTTGTTAAAGAAAACC 57.173 29.630 0.00 0.00 0.00 3.27
3731 6674 9.038072 TCTTACCCTTTTTGTTAAAGAAAACCT 57.962 29.630 0.00 0.00 0.00 3.50
3734 6677 7.270047 ACCCTTTTTGTTAAAGAAAACCTAGC 58.730 34.615 0.00 0.00 0.00 3.42
3735 6678 7.093245 ACCCTTTTTGTTAAAGAAAACCTAGCA 60.093 33.333 0.00 0.00 0.00 3.49
3736 6679 7.931407 CCCTTTTTGTTAAAGAAAACCTAGCAT 59.069 33.333 0.00 0.00 0.00 3.79
3737 6680 8.764287 CCTTTTTGTTAAAGAAAACCTAGCATG 58.236 33.333 0.00 0.00 0.00 4.06
3738 6681 7.707774 TTTTGTTAAAGAAAACCTAGCATGC 57.292 32.000 10.51 10.51 0.00 4.06
3739 6682 6.648879 TTGTTAAAGAAAACCTAGCATGCT 57.351 33.333 25.99 25.99 0.00 3.79
3740 6683 6.012658 TGTTAAAGAAAACCTAGCATGCTG 57.987 37.500 30.42 16.80 0.00 4.41
3741 6684 5.048083 TGTTAAAGAAAACCTAGCATGCTGG 60.048 40.000 30.42 26.70 0.00 4.85
3742 6685 1.467920 AGAAAACCTAGCATGCTGGC 58.532 50.000 30.42 13.54 0.00 4.85
3766 6709 1.762460 CGGCTCCACCCACTCCTAT 60.762 63.158 0.00 0.00 33.26 2.57
3781 6724 1.522355 CTATGTGCTCCACGGCCTG 60.522 63.158 0.00 0.00 37.14 4.85
3833 6780 1.227118 GCTCGGCTTGCTAGACTCC 60.227 63.158 0.00 0.00 0.00 3.85
3835 6782 0.532573 CTCGGCTTGCTAGACTCCAA 59.467 55.000 0.00 0.00 0.00 3.53
3840 6787 0.608640 CTTGCTAGACTCCAACCCGT 59.391 55.000 0.00 0.00 0.00 5.28
3841 6788 0.606604 TTGCTAGACTCCAACCCGTC 59.393 55.000 0.00 0.00 0.00 4.79
3844 6791 2.280823 CTAGACTCCAACCCGTCGCC 62.281 65.000 0.00 0.00 35.38 5.54
3863 6810 1.051812 CCTCCGATTAGTCCTGCCAT 58.948 55.000 0.00 0.00 0.00 4.40
3865 6812 0.758734 TCCGATTAGTCCTGCCATGG 59.241 55.000 7.63 7.63 0.00 3.66
3881 6828 2.122989 GGCTCCCCCACCTATCGA 60.123 66.667 0.00 0.00 0.00 3.59
3884 6831 1.749334 GCTCCCCCACCTATCGACAG 61.749 65.000 0.00 0.00 0.00 3.51
3894 6841 0.992072 CTATCGACAGGTGTTGTGCG 59.008 55.000 0.00 0.00 41.05 5.34
3895 6842 0.389296 TATCGACAGGTGTTGTGCGG 60.389 55.000 0.00 0.00 41.05 5.69
3902 6849 4.643387 GTGTTGTGCGGCTCCCCT 62.643 66.667 0.00 0.00 0.00 4.79
3903 6850 3.884774 TGTTGTGCGGCTCCCCTT 61.885 61.111 0.00 0.00 0.00 3.95
3905 6852 1.745489 GTTGTGCGGCTCCCCTTAG 60.745 63.158 0.00 0.00 0.00 2.18
3907 6854 2.180159 TTGTGCGGCTCCCCTTAGTC 62.180 60.000 0.00 0.00 0.00 2.59
3908 6855 3.081409 TGCGGCTCCCCTTAGTCC 61.081 66.667 0.00 0.00 0.00 3.85
3911 6858 1.522569 CGGCTCCCCTTAGTCCTTG 59.477 63.158 0.00 0.00 0.00 3.61
3912 6859 1.224870 GGCTCCCCTTAGTCCTTGC 59.775 63.158 0.00 0.00 0.00 4.01
3913 6860 1.224870 GCTCCCCTTAGTCCTTGCC 59.775 63.158 0.00 0.00 0.00 4.52
3914 6861 1.915983 CTCCCCTTAGTCCTTGCCC 59.084 63.158 0.00 0.00 0.00 5.36
3915 6862 1.972660 CTCCCCTTAGTCCTTGCCCG 61.973 65.000 0.00 0.00 0.00 6.13
3916 6863 1.993391 CCCCTTAGTCCTTGCCCGA 60.993 63.158 0.00 0.00 0.00 5.14
3917 6864 1.522569 CCCTTAGTCCTTGCCCGAG 59.477 63.158 0.00 0.00 0.00 4.63
3918 6865 0.976073 CCCTTAGTCCTTGCCCGAGA 60.976 60.000 0.00 0.00 0.00 4.04
3919 6866 0.175989 CCTTAGTCCTTGCCCGAGAC 59.824 60.000 0.00 0.00 0.00 3.36
3925 6872 2.348998 CTTGCCCGAGACCTTGCT 59.651 61.111 0.00 0.00 0.00 3.91
3926 6873 1.302832 CTTGCCCGAGACCTTGCTT 60.303 57.895 0.00 0.00 0.00 3.91
3935 6882 4.253685 CCGAGACCTTGCTTAATTTGAGA 58.746 43.478 0.00 0.00 0.00 3.27
3936 6883 4.878397 CCGAGACCTTGCTTAATTTGAGAT 59.122 41.667 0.00 0.00 0.00 2.75
3937 6884 5.007136 CCGAGACCTTGCTTAATTTGAGATC 59.993 44.000 0.00 0.00 0.00 2.75
3938 6885 5.007136 CGAGACCTTGCTTAATTTGAGATCC 59.993 44.000 0.00 0.00 0.00 3.36
3939 6886 5.819991 AGACCTTGCTTAATTTGAGATCCA 58.180 37.500 0.00 0.00 0.00 3.41
3953 6900 1.133853 AGATCCAATGGAAGAGCAGGC 60.134 52.381 5.89 0.00 34.34 4.85
3955 6902 2.117156 CCAATGGAAGAGCAGGCCG 61.117 63.158 0.00 0.00 0.00 6.13
3983 6930 3.627041 TGATCAAGAGGGCTAGGAGAT 57.373 47.619 0.00 0.00 0.00 2.75
3985 6932 3.645212 TGATCAAGAGGGCTAGGAGATTG 59.355 47.826 0.00 0.00 0.00 2.67
3986 6933 3.121929 TCAAGAGGGCTAGGAGATTGT 57.878 47.619 0.00 0.00 0.00 2.71
3989 6936 3.413105 AGAGGGCTAGGAGATTGTTCT 57.587 47.619 0.00 0.00 33.88 3.01
3990 6937 3.730269 AGAGGGCTAGGAGATTGTTCTT 58.270 45.455 0.00 0.00 30.30 2.52
3996 6943 2.317530 AGGAGATTGTTCTTAGCCGC 57.682 50.000 0.00 0.00 30.30 6.53
4001 6948 1.369091 ATTGTTCTTAGCCGCCGCAG 61.369 55.000 0.00 0.00 37.52 5.18
4033 6980 2.288457 CGTCCATGATGCTCTAATCCGT 60.288 50.000 0.00 0.00 0.00 4.69
4052 7037 1.760875 GAGGAGCCCGGTGATGGTA 60.761 63.158 0.00 0.00 0.00 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.631377 CGAACTTCATGTTTCAGGCATCTA 59.369 41.667 0.00 0.00 39.30 1.98
2 3 3.751621 CGAACTTCATGTTTCAGGCATC 58.248 45.455 0.00 0.00 39.30 3.91
3 4 2.095059 GCGAACTTCATGTTTCAGGCAT 60.095 45.455 0.00 0.00 39.30 4.40
5 6 1.266718 TGCGAACTTCATGTTTCAGGC 59.733 47.619 0.00 0.00 39.30 4.85
6 7 3.837213 ATGCGAACTTCATGTTTCAGG 57.163 42.857 0.00 0.00 39.30 3.86
7 8 7.633621 ACATATATGCGAACTTCATGTTTCAG 58.366 34.615 12.79 0.00 39.30 3.02
9 10 7.910162 ACAACATATATGCGAACTTCATGTTTC 59.090 33.333 12.79 0.00 39.30 2.78
10 11 7.761409 ACAACATATATGCGAACTTCATGTTT 58.239 30.769 12.79 0.00 39.30 2.83
12 13 6.925610 ACAACATATATGCGAACTTCATGT 57.074 33.333 12.79 2.28 0.00 3.21
13 14 9.882996 AAATACAACATATATGCGAACTTCATG 57.117 29.630 12.79 0.00 0.00 3.07
27 28 9.019656 TGGTGCTTGTAGAAAAATACAACATAT 57.980 29.630 0.00 0.00 39.98 1.78
29 30 7.283625 TGGTGCTTGTAGAAAAATACAACAT 57.716 32.000 0.00 0.00 39.98 2.71
31 32 7.167468 CACTTGGTGCTTGTAGAAAAATACAAC 59.833 37.037 0.00 0.00 39.98 3.32
33 34 6.734137 CACTTGGTGCTTGTAGAAAAATACA 58.266 36.000 0.00 0.00 33.88 2.29
49 50 5.008019 GGATTCATAGTACATGCACTTGGTG 59.992 44.000 3.37 2.16 36.51 4.17
51 52 5.371526 AGGATTCATAGTACATGCACTTGG 58.628 41.667 3.37 0.00 0.00 3.61
52 53 9.881649 ATATAGGATTCATAGTACATGCACTTG 57.118 33.333 3.37 3.31 0.00 3.16
67 68 9.224267 GCTTCAAGCATCTTTATATAGGATTCA 57.776 33.333 3.89 0.00 41.89 2.57
87 88 4.859304 ATCTGCAAAGTTGATGCTTCAA 57.141 36.364 10.76 10.76 44.14 2.69
92 93 6.127810 TCTGAATATCTGCAAAGTTGATGC 57.872 37.500 0.00 0.00 44.08 3.91
96 97 5.353400 TGAGCTCTGAATATCTGCAAAGTTG 59.647 40.000 16.19 0.00 0.00 3.16
99 101 4.874396 TGTGAGCTCTGAATATCTGCAAAG 59.126 41.667 16.19 0.00 0.00 2.77
106 108 5.463392 TGCGTTTATGTGAGCTCTGAATATC 59.537 40.000 16.19 6.08 0.00 1.63
117 119 5.034554 ACTGACAATTGCGTTTATGTGAG 57.965 39.130 5.05 0.00 33.92 3.51
118 120 5.211454 CAACTGACAATTGCGTTTATGTGA 58.789 37.500 5.05 0.00 0.00 3.58
154 156 3.398406 TCTGCAAGTCAAAGTTATGCGA 58.602 40.909 0.00 0.00 39.81 5.10
166 168 2.910199 TGTATGCTGGATCTGCAAGTC 58.090 47.619 15.47 10.40 41.24 3.01
203 205 7.060289 GCTCGATGCATGTTATTAACAATCATG 59.940 37.037 21.40 13.85 45.86 3.07
204 206 7.080099 GCTCGATGCATGTTATTAACAATCAT 58.920 34.615 18.65 18.65 45.86 2.45
205 207 6.429624 GCTCGATGCATGTTATTAACAATCA 58.570 36.000 12.96 13.05 45.86 2.57
206 208 6.901699 GCTCGATGCATGTTATTAACAATC 57.098 37.500 12.96 10.44 45.86 2.67
226 228 2.656560 AGTTGACACCGAGTATGCTC 57.343 50.000 0.00 0.00 38.35 4.26
227 229 2.688507 CAAGTTGACACCGAGTATGCT 58.311 47.619 0.00 0.00 0.00 3.79
228 230 1.128692 GCAAGTTGACACCGAGTATGC 59.871 52.381 7.16 0.00 0.00 3.14
229 231 1.390123 CGCAAGTTGACACCGAGTATG 59.610 52.381 7.16 0.00 0.00 2.39
230 232 1.271379 TCGCAAGTTGACACCGAGTAT 59.729 47.619 7.16 0.00 39.48 2.12
231 233 0.669619 TCGCAAGTTGACACCGAGTA 59.330 50.000 7.16 0.00 39.48 2.59
232 234 0.179094 TTCGCAAGTTGACACCGAGT 60.179 50.000 7.16 0.00 39.48 4.18
233 235 0.232303 GTTCGCAAGTTGACACCGAG 59.768 55.000 7.16 0.00 39.48 4.63
234 236 1.155424 GGTTCGCAAGTTGACACCGA 61.155 55.000 7.16 2.99 39.48 4.69
235 237 1.278637 GGTTCGCAAGTTGACACCG 59.721 57.895 7.16 0.28 39.48 4.94
236 238 0.028902 GTGGTTCGCAAGTTGACACC 59.971 55.000 7.16 9.11 39.48 4.16
237 239 0.730265 TGTGGTTCGCAAGTTGACAC 59.270 50.000 7.16 7.46 39.48 3.67
238 240 1.454201 TTGTGGTTCGCAAGTTGACA 58.546 45.000 7.16 0.00 39.48 3.58
239 241 2.553079 TTTGTGGTTCGCAAGTTGAC 57.447 45.000 7.16 0.00 35.27 3.18
240 242 3.791973 AATTTGTGGTTCGCAAGTTGA 57.208 38.095 7.16 0.00 33.75 3.18
241 243 3.862267 TCAAATTTGTGGTTCGCAAGTTG 59.138 39.130 17.47 0.00 34.86 3.16
242 244 4.116747 TCAAATTTGTGGTTCGCAAGTT 57.883 36.364 17.47 0.00 35.83 2.66
243 245 3.791973 TCAAATTTGTGGTTCGCAAGT 57.208 38.095 17.47 0.00 35.27 3.16
244 246 4.148696 GTGATCAAATTTGTGGTTCGCAAG 59.851 41.667 17.47 0.00 35.27 4.01
245 247 4.047822 GTGATCAAATTTGTGGTTCGCAA 58.952 39.130 17.47 0.00 31.73 4.85
246 248 3.637432 GTGATCAAATTTGTGGTTCGCA 58.363 40.909 17.47 4.65 0.00 5.10
247 249 2.656422 CGTGATCAAATTTGTGGTTCGC 59.344 45.455 17.47 14.34 0.00 4.70
248 250 3.058570 TCCGTGATCAAATTTGTGGTTCG 60.059 43.478 17.47 15.10 0.00 3.95
249 251 4.497473 TCCGTGATCAAATTTGTGGTTC 57.503 40.909 17.47 10.89 0.00 3.62
250 252 4.927978 TTCCGTGATCAAATTTGTGGTT 57.072 36.364 17.47 2.25 0.00 3.67
251 253 4.927978 TTTCCGTGATCAAATTTGTGGT 57.072 36.364 17.47 5.74 0.00 4.16
252 254 5.060816 CGAATTTCCGTGATCAAATTTGTGG 59.939 40.000 17.47 12.28 33.31 4.17
253 255 5.855925 TCGAATTTCCGTGATCAAATTTGTG 59.144 36.000 17.47 4.55 35.85 3.33
254 256 5.856455 GTCGAATTTCCGTGATCAAATTTGT 59.144 36.000 17.47 5.61 35.85 2.83
255 257 6.086222 AGTCGAATTTCCGTGATCAAATTTG 58.914 36.000 12.15 12.15 35.76 2.32
256 258 6.254281 AGTCGAATTTCCGTGATCAAATTT 57.746 33.333 0.00 0.00 33.31 1.82
257 259 5.880054 AGTCGAATTTCCGTGATCAAATT 57.120 34.783 0.00 0.00 35.38 1.82
258 260 5.411361 TGAAGTCGAATTTCCGTGATCAAAT 59.589 36.000 0.00 0.00 0.00 2.32
259 261 4.752604 TGAAGTCGAATTTCCGTGATCAAA 59.247 37.500 0.00 0.00 0.00 2.69
260 262 4.311606 TGAAGTCGAATTTCCGTGATCAA 58.688 39.130 0.00 0.00 0.00 2.57
261 263 3.920446 TGAAGTCGAATTTCCGTGATCA 58.080 40.909 0.00 0.00 0.00 2.92
262 264 3.242123 GCTGAAGTCGAATTTCCGTGATC 60.242 47.826 0.00 0.00 0.00 2.92
263 265 2.673368 GCTGAAGTCGAATTTCCGTGAT 59.327 45.455 0.00 0.00 0.00 3.06
264 266 2.066262 GCTGAAGTCGAATTTCCGTGA 58.934 47.619 0.00 0.00 0.00 4.35
265 267 1.798223 TGCTGAAGTCGAATTTCCGTG 59.202 47.619 0.00 0.00 0.00 4.94
266 268 2.069273 CTGCTGAAGTCGAATTTCCGT 58.931 47.619 0.00 0.00 0.00 4.69
267 269 1.394917 CCTGCTGAAGTCGAATTTCCG 59.605 52.381 0.00 0.00 0.00 4.30
268 270 1.131315 GCCTGCTGAAGTCGAATTTCC 59.869 52.381 0.00 0.00 0.00 3.13
269 271 1.806542 TGCCTGCTGAAGTCGAATTTC 59.193 47.619 0.00 1.66 0.00 2.17
270 272 1.537202 GTGCCTGCTGAAGTCGAATTT 59.463 47.619 0.00 0.00 0.00 1.82
271 273 1.160137 GTGCCTGCTGAAGTCGAATT 58.840 50.000 0.00 0.00 0.00 2.17
272 274 0.322975 AGTGCCTGCTGAAGTCGAAT 59.677 50.000 0.00 0.00 0.00 3.34
273 275 0.319900 GAGTGCCTGCTGAAGTCGAA 60.320 55.000 0.00 0.00 0.00 3.71
274 276 1.290324 GAGTGCCTGCTGAAGTCGA 59.710 57.895 0.00 0.00 0.00 4.20
275 277 0.390866 ATGAGTGCCTGCTGAAGTCG 60.391 55.000 0.00 0.00 0.00 4.18
276 278 1.066286 AGATGAGTGCCTGCTGAAGTC 60.066 52.381 0.00 0.00 0.00 3.01
277 279 0.982704 AGATGAGTGCCTGCTGAAGT 59.017 50.000 0.00 0.00 0.00 3.01
278 280 2.110901 AAGATGAGTGCCTGCTGAAG 57.889 50.000 0.00 0.00 0.00 3.02
279 281 2.574006 AAAGATGAGTGCCTGCTGAA 57.426 45.000 0.00 0.00 0.00 3.02
280 282 2.568956 AGTAAAGATGAGTGCCTGCTGA 59.431 45.455 0.00 0.00 0.00 4.26
281 283 2.983229 AGTAAAGATGAGTGCCTGCTG 58.017 47.619 0.00 0.00 0.00 4.41
282 284 3.710209 AAGTAAAGATGAGTGCCTGCT 57.290 42.857 0.00 0.00 0.00 4.24
283 285 4.457257 AGAAAAGTAAAGATGAGTGCCTGC 59.543 41.667 0.00 0.00 0.00 4.85
284 286 6.429385 AGAAGAAAAGTAAAGATGAGTGCCTG 59.571 38.462 0.00 0.00 0.00 4.85
285 287 6.538263 AGAAGAAAAGTAAAGATGAGTGCCT 58.462 36.000 0.00 0.00 0.00 4.75
286 288 6.428159 TGAGAAGAAAAGTAAAGATGAGTGCC 59.572 38.462 0.00 0.00 0.00 5.01
287 289 7.386299 TCTGAGAAGAAAAGTAAAGATGAGTGC 59.614 37.037 0.00 0.00 0.00 4.40
288 290 8.824159 TCTGAGAAGAAAAGTAAAGATGAGTG 57.176 34.615 0.00 0.00 0.00 3.51
289 291 9.267084 GTTCTGAGAAGAAAAGTAAAGATGAGT 57.733 33.333 0.00 0.00 0.00 3.41
290 292 9.265901 TGTTCTGAGAAGAAAAGTAAAGATGAG 57.734 33.333 0.00 0.00 0.00 2.90
291 293 9.784531 ATGTTCTGAGAAGAAAAGTAAAGATGA 57.215 29.630 0.00 0.00 0.00 2.92
298 300 9.490379 GGACTAAATGTTCTGAGAAGAAAAGTA 57.510 33.333 0.00 0.00 0.00 2.24
299 301 7.993183 TGGACTAAATGTTCTGAGAAGAAAAGT 59.007 33.333 0.00 0.00 0.00 2.66
300 302 8.383318 TGGACTAAATGTTCTGAGAAGAAAAG 57.617 34.615 0.00 0.00 0.00 2.27
301 303 8.746052 TTGGACTAAATGTTCTGAGAAGAAAA 57.254 30.769 0.00 0.00 0.00 2.29
302 304 8.746052 TTTGGACTAAATGTTCTGAGAAGAAA 57.254 30.769 0.00 0.00 0.00 2.52
327 329 6.598064 GGGTGCTAGTACTGAATGTTTTGTAT 59.402 38.462 10.95 0.00 0.00 2.29
336 338 5.069251 GTGACTATGGGTGCTAGTACTGAAT 59.931 44.000 10.95 5.15 29.67 2.57
340 342 3.700038 GTGTGACTATGGGTGCTAGTACT 59.300 47.826 10.95 0.00 29.67 2.73
343 345 2.821437 AGTGTGACTATGGGTGCTAGT 58.179 47.619 0.00 0.00 32.17 2.57
355 357 4.137543 GGGACTGAATTTCAAGTGTGACT 58.862 43.478 0.01 0.00 31.90 3.41
363 365 2.886523 CAGTGCTGGGACTGAATTTCAA 59.113 45.455 15.46 0.00 45.39 2.69
396 398 1.142936 TGGGGTATGAGCAGATGCAT 58.857 50.000 0.00 0.00 45.16 3.96
416 418 4.677779 GCCTTTCTTTCTGTTGCTCAAACA 60.678 41.667 0.00 0.00 46.66 2.83
417 419 3.798878 GCCTTTCTTTCTGTTGCTCAAAC 59.201 43.478 0.00 0.00 39.41 2.93
424 426 3.005155 CCCTTCTGCCTTTCTTTCTGTTG 59.995 47.826 0.00 0.00 0.00 3.33
448 450 8.892723 GGACATTTGAAATTTTGGGATATTTCC 58.107 33.333 0.00 0.00 39.08 3.13
449 451 8.892723 GGGACATTTGAAATTTTGGGATATTTC 58.107 33.333 0.00 0.00 39.86 2.17
450 452 8.389366 TGGGACATTTGAAATTTTGGGATATTT 58.611 29.630 0.00 0.00 0.00 1.40
451 453 7.926705 TGGGACATTTGAAATTTTGGGATATT 58.073 30.769 0.00 0.00 0.00 1.28
452 454 7.507797 TGGGACATTTGAAATTTTGGGATAT 57.492 32.000 0.00 0.00 0.00 1.63
453 455 6.942163 TGGGACATTTGAAATTTTGGGATA 57.058 33.333 0.00 0.00 0.00 2.59
454 456 5.839517 TGGGACATTTGAAATTTTGGGAT 57.160 34.783 0.00 0.00 0.00 3.85
464 466 7.093814 GCATATTGCCTATATGGGACATTTGAA 60.094 37.037 9.73 0.00 44.20 2.69
465 467 6.377996 GCATATTGCCTATATGGGACATTTGA 59.622 38.462 9.73 0.00 44.20 2.69
466 468 6.379133 AGCATATTGCCTATATGGGACATTTG 59.621 38.462 9.73 6.24 46.52 2.32
467 469 6.496743 AGCATATTGCCTATATGGGACATTT 58.503 36.000 9.73 1.15 46.52 2.32
468 470 6.083487 AGCATATTGCCTATATGGGACATT 57.917 37.500 9.73 5.88 46.52 2.71
469 471 5.722172 AGCATATTGCCTATATGGGACAT 57.278 39.130 9.73 2.16 46.52 3.06
470 472 5.519183 AAGCATATTGCCTATATGGGACA 57.481 39.130 9.73 3.77 46.52 4.02
471 473 6.434028 TGAAAAGCATATTGCCTATATGGGAC 59.566 38.462 9.73 0.98 46.52 4.46
472 474 6.434028 GTGAAAAGCATATTGCCTATATGGGA 59.566 38.462 9.73 0.00 46.52 4.37
473 475 6.209192 TGTGAAAAGCATATTGCCTATATGGG 59.791 38.462 14.33 0.00 46.52 4.00
474 476 7.218228 TGTGAAAAGCATATTGCCTATATGG 57.782 36.000 14.33 0.00 46.52 2.74
475 477 7.758076 CCATGTGAAAAGCATATTGCCTATATG 59.242 37.037 10.18 10.18 46.52 1.78
476 478 7.093640 CCCATGTGAAAAGCATATTGCCTATAT 60.094 37.037 0.00 0.00 46.52 0.86
477 479 6.209192 CCCATGTGAAAAGCATATTGCCTATA 59.791 38.462 0.00 0.00 46.52 1.31
478 480 5.011329 CCCATGTGAAAAGCATATTGCCTAT 59.989 40.000 0.00 0.00 46.52 2.57
479 481 4.341806 CCCATGTGAAAAGCATATTGCCTA 59.658 41.667 0.00 0.00 46.52 3.93
480 482 3.133362 CCCATGTGAAAAGCATATTGCCT 59.867 43.478 0.00 0.00 46.52 4.75
481 483 3.132646 TCCCATGTGAAAAGCATATTGCC 59.867 43.478 0.00 0.00 46.52 4.52
482 484 4.114794 GTCCCATGTGAAAAGCATATTGC 58.885 43.478 0.00 0.00 45.46 3.56
483 485 5.327616 TGTCCCATGTGAAAAGCATATTG 57.672 39.130 0.00 0.00 0.00 1.90
484 486 6.549433 AATGTCCCATGTGAAAAGCATATT 57.451 33.333 0.00 0.00 0.00 1.28
485 487 6.549433 AAATGTCCCATGTGAAAAGCATAT 57.451 33.333 0.00 0.00 0.00 1.78
486 488 5.999205 AAATGTCCCATGTGAAAAGCATA 57.001 34.783 0.00 0.00 0.00 3.14
487 489 4.895668 AAATGTCCCATGTGAAAAGCAT 57.104 36.364 0.00 0.00 0.00 3.79
488 490 5.076182 TCTAAATGTCCCATGTGAAAAGCA 58.924 37.500 0.00 0.00 0.00 3.91
489 491 5.643379 TCTAAATGTCCCATGTGAAAAGC 57.357 39.130 0.00 0.00 0.00 3.51
490 492 7.661040 AGTTTCTAAATGTCCCATGTGAAAAG 58.339 34.615 0.00 0.00 0.00 2.27
491 493 7.595819 AGTTTCTAAATGTCCCATGTGAAAA 57.404 32.000 0.00 0.00 0.00 2.29
492 494 7.595819 AAGTTTCTAAATGTCCCATGTGAAA 57.404 32.000 0.00 0.00 0.00 2.69
493 495 8.698973 TTAAGTTTCTAAATGTCCCATGTGAA 57.301 30.769 0.00 0.00 0.00 3.18
494 496 8.698973 TTTAAGTTTCTAAATGTCCCATGTGA 57.301 30.769 0.00 0.00 0.00 3.58
510 512 9.678941 CCCTTCTTGTCTTTGTATTTAAGTTTC 57.321 33.333 0.00 0.00 0.00 2.78
511 513 8.141909 GCCCTTCTTGTCTTTGTATTTAAGTTT 58.858 33.333 0.00 0.00 0.00 2.66
512 514 7.286775 TGCCCTTCTTGTCTTTGTATTTAAGTT 59.713 33.333 0.00 0.00 0.00 2.66
513 515 6.775629 TGCCCTTCTTGTCTTTGTATTTAAGT 59.224 34.615 0.00 0.00 0.00 2.24
514 516 7.214467 TGCCCTTCTTGTCTTTGTATTTAAG 57.786 36.000 0.00 0.00 0.00 1.85
515 517 7.775053 ATGCCCTTCTTGTCTTTGTATTTAA 57.225 32.000 0.00 0.00 0.00 1.52
516 518 8.871629 TTATGCCCTTCTTGTCTTTGTATTTA 57.128 30.769 0.00 0.00 0.00 1.40
517 519 7.669722 TCTTATGCCCTTCTTGTCTTTGTATTT 59.330 33.333 0.00 0.00 0.00 1.40
518 520 7.175104 TCTTATGCCCTTCTTGTCTTTGTATT 58.825 34.615 0.00 0.00 0.00 1.89
519 521 6.721318 TCTTATGCCCTTCTTGTCTTTGTAT 58.279 36.000 0.00 0.00 0.00 2.29
520 522 6.121776 TCTTATGCCCTTCTTGTCTTTGTA 57.878 37.500 0.00 0.00 0.00 2.41
521 523 4.985538 TCTTATGCCCTTCTTGTCTTTGT 58.014 39.130 0.00 0.00 0.00 2.83
522 524 5.649395 TGATCTTATGCCCTTCTTGTCTTTG 59.351 40.000 0.00 0.00 0.00 2.77
523 525 5.819991 TGATCTTATGCCCTTCTTGTCTTT 58.180 37.500 0.00 0.00 0.00 2.52
524 526 5.045286 ACTGATCTTATGCCCTTCTTGTCTT 60.045 40.000 0.00 0.00 0.00 3.01
525 527 4.472833 ACTGATCTTATGCCCTTCTTGTCT 59.527 41.667 0.00 0.00 0.00 3.41
526 528 4.574013 CACTGATCTTATGCCCTTCTTGTC 59.426 45.833 0.00 0.00 0.00 3.18
527 529 4.018960 ACACTGATCTTATGCCCTTCTTGT 60.019 41.667 0.00 0.00 0.00 3.16
528 530 4.521146 ACACTGATCTTATGCCCTTCTTG 58.479 43.478 0.00 0.00 0.00 3.02
529 531 4.225942 TGACACTGATCTTATGCCCTTCTT 59.774 41.667 0.00 0.00 0.00 2.52
530 532 3.776969 TGACACTGATCTTATGCCCTTCT 59.223 43.478 0.00 0.00 0.00 2.85
531 533 4.142609 TGACACTGATCTTATGCCCTTC 57.857 45.455 0.00 0.00 0.00 3.46
532 534 4.018960 AGTTGACACTGATCTTATGCCCTT 60.019 41.667 0.00 0.00 0.00 3.95
533 535 3.521126 AGTTGACACTGATCTTATGCCCT 59.479 43.478 0.00 0.00 0.00 5.19
534 536 3.878778 AGTTGACACTGATCTTATGCCC 58.121 45.455 0.00 0.00 0.00 5.36
546 548 0.179018 GCCCCACTTCAGTTGACACT 60.179 55.000 0.00 0.00 0.00 3.55
547 549 0.465460 TGCCCCACTTCAGTTGACAC 60.465 55.000 0.00 0.00 0.00 3.67
548 550 0.478072 ATGCCCCACTTCAGTTGACA 59.522 50.000 0.00 0.00 0.00 3.58
549 551 2.359900 CTATGCCCCACTTCAGTTGAC 58.640 52.381 0.00 0.00 0.00 3.18
550 552 1.281867 CCTATGCCCCACTTCAGTTGA 59.718 52.381 0.00 0.00 0.00 3.18
551 553 1.755179 CCTATGCCCCACTTCAGTTG 58.245 55.000 0.00 0.00 0.00 3.16
552 554 0.034089 GCCTATGCCCCACTTCAGTT 60.034 55.000 0.00 0.00 0.00 3.16
553 555 1.207488 TGCCTATGCCCCACTTCAGT 61.207 55.000 0.00 0.00 36.33 3.41
554 556 0.184451 ATGCCTATGCCCCACTTCAG 59.816 55.000 0.00 0.00 36.33 3.02
555 557 1.517238 TATGCCTATGCCCCACTTCA 58.483 50.000 0.00 0.00 36.33 3.02
556 558 2.040278 TCATATGCCTATGCCCCACTTC 59.960 50.000 4.26 0.00 35.64 3.01
557 559 2.065007 TCATATGCCTATGCCCCACTT 58.935 47.619 4.26 0.00 35.64 3.16
558 560 1.746157 TCATATGCCTATGCCCCACT 58.254 50.000 4.26 0.00 35.64 4.00
559 561 2.648059 GATCATATGCCTATGCCCCAC 58.352 52.381 4.26 0.00 35.64 4.61
560 562 1.565759 GGATCATATGCCTATGCCCCA 59.434 52.381 4.26 0.00 35.64 4.96
561 563 1.565759 TGGATCATATGCCTATGCCCC 59.434 52.381 4.26 7.92 35.64 5.80
562 564 3.370840 TTGGATCATATGCCTATGCCC 57.629 47.619 4.26 8.22 35.64 5.36
563 565 6.774170 TGATATTTGGATCATATGCCTATGCC 59.226 38.462 4.26 2.24 35.64 4.40
564 566 7.812690 TGATATTTGGATCATATGCCTATGC 57.187 36.000 4.26 0.00 35.64 3.14
565 567 8.793592 CCATGATATTTGGATCATATGCCTATG 58.206 37.037 2.79 2.79 43.29 2.23
566 568 7.948447 CCCATGATATTTGGATCATATGCCTAT 59.052 37.037 0.00 0.00 43.29 2.57
567 569 7.292319 CCCATGATATTTGGATCATATGCCTA 58.708 38.462 0.00 0.00 43.29 3.93
568 570 6.134055 CCCATGATATTTGGATCATATGCCT 58.866 40.000 0.00 0.00 43.29 4.75
569 571 5.221382 GCCCATGATATTTGGATCATATGCC 60.221 44.000 0.00 0.00 43.29 4.40
570 572 5.361571 TGCCCATGATATTTGGATCATATGC 59.638 40.000 0.00 10.22 43.29 3.14
571 573 7.597288 ATGCCCATGATATTTGGATCATATG 57.403 36.000 7.11 0.00 43.29 1.78
572 574 9.309224 CATATGCCCATGATATTTGGATCATAT 57.691 33.333 16.69 16.69 43.29 1.78
573 575 8.504409 TCATATGCCCATGATATTTGGATCATA 58.496 33.333 0.00 11.99 43.29 2.15
577 579 6.955267 TGTTCATATGCCCATGATATTTGGAT 59.045 34.615 0.00 0.00 36.26 3.41
578 580 6.313324 TGTTCATATGCCCATGATATTTGGA 58.687 36.000 0.00 0.00 36.26 3.53
586 588 3.896888 GGGATTTGTTCATATGCCCATGA 59.103 43.478 7.28 0.00 34.25 3.07
597 599 8.757877 CCTAAATATTTTGAGGGGATTTGTTCA 58.242 33.333 5.91 0.00 30.40 3.18
598 600 8.204160 CCCTAAATATTTTGAGGGGATTTGTTC 58.796 37.037 21.66 0.00 46.79 3.18
599 601 8.089625 CCCTAAATATTTTGAGGGGATTTGTT 57.910 34.615 21.66 0.00 46.79 2.83
600 602 7.675161 CCCTAAATATTTTGAGGGGATTTGT 57.325 36.000 21.66 0.00 46.79 2.83
610 616 7.276658 TCAGTATGACGCCCTAAATATTTTGA 58.723 34.615 5.91 0.00 42.56 2.69
611 617 7.490962 TCAGTATGACGCCCTAAATATTTTG 57.509 36.000 5.91 4.28 42.56 2.44
637 643 1.256812 TGATGCTCTCTCCGTTCACA 58.743 50.000 0.00 0.00 0.00 3.58
638 644 2.593346 ATGATGCTCTCTCCGTTCAC 57.407 50.000 0.00 0.00 0.00 3.18
639 645 3.067320 CAGTATGATGCTCTCTCCGTTCA 59.933 47.826 0.00 0.00 39.69 3.18
640 646 3.316588 TCAGTATGATGCTCTCTCCGTTC 59.683 47.826 0.00 0.00 42.56 3.95
725 760 8.443176 ACATGGATTACTCATCTTGGATATGTT 58.557 33.333 0.00 0.00 31.67 2.71
762 797 5.648092 TGCCTTAGAAACTTAAGCTTGATCC 59.352 40.000 9.86 0.00 30.84 3.36
977 1025 6.282199 TGTTACCATCAGAGGTTTCTAGTC 57.718 41.667 0.00 0.00 43.08 2.59
984 1032 6.560003 TCATACATGTTACCATCAGAGGTT 57.440 37.500 2.30 0.00 43.08 3.50
988 1036 6.767423 CCAACATCATACATGTTACCATCAGA 59.233 38.462 2.30 0.00 39.94 3.27
991 1039 6.767902 ACTCCAACATCATACATGTTACCATC 59.232 38.462 2.30 0.00 39.94 3.51
1002 1050 5.105554 ACTCTCAGTGACTCCAACATCATAC 60.106 44.000 0.00 0.00 0.00 2.39
1020 1068 7.670364 TCAAGATTGTTCTGTTCATACTCTCA 58.330 34.615 0.00 0.00 30.72 3.27
1041 1089 4.212143 TGATGACCATCCAGACTTCAAG 57.788 45.455 7.46 0.00 37.02 3.02
1092 1140 8.285394 CCAAGGTATCGAAACATCAATGAATAG 58.715 37.037 0.00 0.00 0.00 1.73
1110 1158 0.258774 AGCGGGCATTTCCAAGGTAT 59.741 50.000 0.00 0.00 36.21 2.73
1122 1170 0.179015 TTGTAACCTCAAAGCGGGCA 60.179 50.000 0.00 0.00 0.00 5.36
1132 1180 8.695456 ACCATTGGAATCAAATATTGTAACCTC 58.305 33.333 10.37 0.00 36.36 3.85
1154 1202 4.475016 AGCACCAGGTATTCTCTTTACCAT 59.525 41.667 0.00 0.00 41.37 3.55
1162 1210 3.265791 CAGAACAGCACCAGGTATTCTC 58.734 50.000 0.00 0.00 0.00 2.87
1167 1215 0.472925 TCCCAGAACAGCACCAGGTA 60.473 55.000 0.00 0.00 0.00 3.08
1183 1233 1.213926 ACCAGAGGCATTTCTCATCCC 59.786 52.381 0.00 0.00 36.30 3.85
1189 1239 2.158623 TGTGAACACCAGAGGCATTTCT 60.159 45.455 2.46 0.00 0.00 2.52
1197 1247 1.605710 CTTGGCTTGTGAACACCAGAG 59.394 52.381 9.65 3.78 32.79 3.35
1198 1248 1.679139 CTTGGCTTGTGAACACCAGA 58.321 50.000 9.65 0.00 32.79 3.86
1201 1251 0.312102 GAGCTTGGCTTGTGAACACC 59.688 55.000 2.46 0.00 39.88 4.16
1205 1255 2.957680 TCAAATGAGCTTGGCTTGTGAA 59.042 40.909 0.00 0.00 39.88 3.18
1209 1259 3.587797 ACATCAAATGAGCTTGGCTTG 57.412 42.857 0.00 0.00 39.88 4.01
1212 1265 3.581024 TCAACATCAAATGAGCTTGGC 57.419 42.857 0.00 0.00 0.00 4.52
1245 1298 1.471684 GACTGAGTAGTACCACCACGG 59.528 57.143 0.00 0.00 37.25 4.94
1699 1765 4.487714 AGAACCTGAACACTGACTTTCA 57.512 40.909 0.00 0.00 0.00 2.69
1921 1991 9.095065 CATAATCCTTACGTATTACCTAATGGC 57.905 37.037 0.00 0.00 36.63 4.40
2101 2326 1.834263 AGATATCGCCCTCCCTAATGC 59.166 52.381 0.00 0.00 0.00 3.56
2132 2357 4.334552 TCTGCTTAGCATTTGTCATTGGA 58.665 39.130 7.58 0.00 38.13 3.53
2598 4522 1.406539 GGGTCAATGTAATGGCTGCTG 59.593 52.381 0.00 0.00 0.00 4.41
3125 5128 3.438781 ACACACTACCACACACAGTTTTG 59.561 43.478 0.00 0.00 0.00 2.44
3263 5312 3.383505 ACAGGTTGTTTAAACTTGAGCCC 59.616 43.478 18.72 9.34 29.30 5.19
3275 5324 2.159114 GGCAACACATCACAGGTTGTTT 60.159 45.455 0.00 0.00 42.84 2.83
3296 5345 3.430895 GTGCCTTCAAACATCAGCAATTG 59.569 43.478 0.00 0.00 31.03 2.32
3353 5403 1.656587 TCACCCCAGCACAGTATCTT 58.343 50.000 0.00 0.00 0.00 2.40
3364 5414 0.965363 CATTCCCGGTTTCACCCCAG 60.965 60.000 0.00 0.00 33.75 4.45
3384 5434 2.963432 CCACAATTCTTTCATGGCACC 58.037 47.619 0.00 0.00 0.00 5.01
3389 5439 4.247267 AGTGTGCCACAATTCTTTCATG 57.753 40.909 0.00 0.00 36.74 3.07
3390 5440 5.316167 TCTAGTGTGCCACAATTCTTTCAT 58.684 37.500 2.02 0.00 36.74 2.57
3434 5484 9.567776 TCAATTGGTTGAAACTAAATAGAGTCA 57.432 29.630 5.42 0.00 41.22 3.41
3436 5486 9.793259 TCTCAATTGGTTGAAACTAAATAGAGT 57.207 29.630 5.42 0.00 43.39 3.24
3438 5488 8.717821 CGTCTCAATTGGTTGAAACTAAATAGA 58.282 33.333 5.42 0.00 43.39 1.98
3439 5489 8.504005 ACGTCTCAATTGGTTGAAACTAAATAG 58.496 33.333 5.42 0.00 43.39 1.73
3440 5490 8.286800 CACGTCTCAATTGGTTGAAACTAAATA 58.713 33.333 5.42 0.00 43.39 1.40
3441 5491 7.012894 TCACGTCTCAATTGGTTGAAACTAAAT 59.987 33.333 5.42 0.00 43.39 1.40
3442 5492 6.316640 TCACGTCTCAATTGGTTGAAACTAAA 59.683 34.615 5.42 0.00 43.39 1.85
3443 5493 5.818336 TCACGTCTCAATTGGTTGAAACTAA 59.182 36.000 5.42 0.00 43.39 2.24
3444 5494 5.361427 TCACGTCTCAATTGGTTGAAACTA 58.639 37.500 5.42 0.00 43.39 2.24
3445 5495 4.196193 TCACGTCTCAATTGGTTGAAACT 58.804 39.130 5.42 0.00 43.39 2.66
3446 5496 4.545823 TCACGTCTCAATTGGTTGAAAC 57.454 40.909 5.42 0.00 43.39 2.78
3447 5497 4.819088 TGATCACGTCTCAATTGGTTGAAA 59.181 37.500 5.42 0.00 43.39 2.69
3448 5498 4.384940 TGATCACGTCTCAATTGGTTGAA 58.615 39.130 5.42 0.00 43.39 2.69
3449 5499 4.001618 TGATCACGTCTCAATTGGTTGA 57.998 40.909 5.42 2.18 41.89 3.18
3450 5500 4.655027 CATGATCACGTCTCAATTGGTTG 58.345 43.478 5.42 0.00 36.65 3.77
3451 5501 3.127548 GCATGATCACGTCTCAATTGGTT 59.872 43.478 5.42 0.00 0.00 3.67
3452 5502 2.679837 GCATGATCACGTCTCAATTGGT 59.320 45.455 5.42 0.00 0.00 3.67
3453 5503 2.679336 TGCATGATCACGTCTCAATTGG 59.321 45.455 5.42 0.00 0.00 3.16
3454 5504 4.279659 CATGCATGATCACGTCTCAATTG 58.720 43.478 22.59 0.00 0.00 2.32
3470 5520 0.604578 ACTTTTTCGCCTGCATGCAT 59.395 45.000 22.97 0.00 0.00 3.96
3475 5525 3.518634 AAAGAAACTTTTTCGCCTGCA 57.481 38.095 0.00 0.00 0.00 4.41
3478 5528 4.112634 GCTGAAAAGAAACTTTTTCGCCT 58.887 39.130 10.15 0.00 45.56 5.52
3479 5529 3.862845 TGCTGAAAAGAAACTTTTTCGCC 59.137 39.130 18.60 8.52 45.56 5.54
3480 5530 5.448926 TTGCTGAAAAGAAACTTTTTCGC 57.551 34.783 10.15 13.95 45.56 4.70
3481 5531 5.804979 TCCTTGCTGAAAAGAAACTTTTTCG 59.195 36.000 10.15 6.54 45.56 3.46
3482 5532 7.624661 CATCCTTGCTGAAAAGAAACTTTTTC 58.375 34.615 10.15 6.18 43.84 2.29
3504 5554 9.110066 GCTATATAGCTGATTGATGCCTGCATC 62.110 44.444 24.63 22.12 46.63 3.91
3505 5555 2.651382 TAGCTGATTGATGCCTGCAT 57.349 45.000 3.90 3.90 39.69 3.96
3507 5557 4.272991 GCTATATAGCTGATTGATGCCTGC 59.727 45.833 24.63 0.00 45.62 4.85
3508 5558 5.987777 GCTATATAGCTGATTGATGCCTG 57.012 43.478 24.63 0.00 45.62 4.85
3522 5572 6.326064 AGGGTTCTGCTGGATATGCTATATAG 59.674 42.308 5.30 5.30 0.00 1.31
3523 5573 6.098838 CAGGGTTCTGCTGGATATGCTATATA 59.901 42.308 0.00 0.00 33.86 0.86
3524 5574 5.035556 AGGGTTCTGCTGGATATGCTATAT 58.964 41.667 0.00 0.00 0.00 0.86
3525 5575 4.223700 CAGGGTTCTGCTGGATATGCTATA 59.776 45.833 0.00 0.00 33.86 1.31
3527 5577 2.369860 CAGGGTTCTGCTGGATATGCTA 59.630 50.000 0.00 0.00 33.86 3.49
3529 5579 1.141657 TCAGGGTTCTGCTGGATATGC 59.858 52.381 0.00 0.00 40.69 3.14
3531 5581 3.266772 TGTTTCAGGGTTCTGCTGGATAT 59.733 43.478 0.00 0.00 40.69 1.63
3533 5583 1.425066 TGTTTCAGGGTTCTGCTGGAT 59.575 47.619 0.00 0.00 40.69 3.41
3534 5584 0.843309 TGTTTCAGGGTTCTGCTGGA 59.157 50.000 0.00 0.00 40.69 3.86
3535 5585 1.242076 CTGTTTCAGGGTTCTGCTGG 58.758 55.000 0.00 0.00 40.69 4.85
3536 5586 1.972872 ACTGTTTCAGGGTTCTGCTG 58.027 50.000 1.90 0.00 40.69 4.41
3537 5587 2.736670 AACTGTTTCAGGGTTCTGCT 57.263 45.000 1.90 0.00 40.69 4.24
3539 5589 4.202050 CCTCAAAACTGTTTCAGGGTTCTG 60.202 45.833 17.60 7.02 42.21 3.02
3540 5590 3.954258 CCTCAAAACTGTTTCAGGGTTCT 59.046 43.478 17.60 0.00 35.51 3.01
3541 5591 3.068165 CCCTCAAAACTGTTTCAGGGTTC 59.932 47.826 27.34 0.00 37.72 3.62
3542 5592 3.031013 CCCTCAAAACTGTTTCAGGGTT 58.969 45.455 27.34 5.01 37.72 4.11
3543 5593 2.666317 CCCTCAAAACTGTTTCAGGGT 58.334 47.619 27.34 5.61 37.72 4.34
3544 5594 1.963515 CCCCTCAAAACTGTTTCAGGG 59.036 52.381 28.09 28.09 40.27 4.45
3545 5595 1.341209 GCCCCTCAAAACTGTTTCAGG 59.659 52.381 18.11 18.11 35.51 3.86
3546 5596 2.310538 AGCCCCTCAAAACTGTTTCAG 58.689 47.619 6.20 5.83 37.52 3.02
3547 5597 2.452600 AGCCCCTCAAAACTGTTTCA 57.547 45.000 6.20 0.00 0.00 2.69
3548 5598 3.457234 CAAAGCCCCTCAAAACTGTTTC 58.543 45.455 6.20 0.00 0.00 2.78
3549 5599 2.170397 CCAAAGCCCCTCAAAACTGTTT 59.830 45.455 0.00 0.00 0.00 2.83
3550 5600 1.762370 CCAAAGCCCCTCAAAACTGTT 59.238 47.619 0.00 0.00 0.00 3.16
3551 5601 1.342975 ACCAAAGCCCCTCAAAACTGT 60.343 47.619 0.00 0.00 0.00 3.55
3552 5602 1.069049 CACCAAAGCCCCTCAAAACTG 59.931 52.381 0.00 0.00 0.00 3.16
3553 5603 1.063266 TCACCAAAGCCCCTCAAAACT 60.063 47.619 0.00 0.00 0.00 2.66
3556 5606 0.178964 CCTCACCAAAGCCCCTCAAA 60.179 55.000 0.00 0.00 0.00 2.69
3557 5607 1.460255 CCTCACCAAAGCCCCTCAA 59.540 57.895 0.00 0.00 0.00 3.02
3558 5608 2.538141 CCCTCACCAAAGCCCCTCA 61.538 63.158 0.00 0.00 0.00 3.86
3559 5609 2.356667 CCCTCACCAAAGCCCCTC 59.643 66.667 0.00 0.00 0.00 4.30
3560 5610 3.268032 CCCCTCACCAAAGCCCCT 61.268 66.667 0.00 0.00 0.00 4.79
3561 5611 4.382541 CCCCCTCACCAAAGCCCC 62.383 72.222 0.00 0.00 0.00 5.80
3565 5615 0.251742 TCAATGCCCCCTCACCAAAG 60.252 55.000 0.00 0.00 0.00 2.77
3567 5617 1.076549 GTCAATGCCCCCTCACCAA 59.923 57.895 0.00 0.00 0.00 3.67
3568 5618 1.724148 TTGTCAATGCCCCCTCACCA 61.724 55.000 0.00 0.00 0.00 4.17
3570 5620 0.967380 CCTTGTCAATGCCCCCTCAC 60.967 60.000 0.00 0.00 0.00 3.51
3571 5621 1.383799 CCTTGTCAATGCCCCCTCA 59.616 57.895 0.00 0.00 0.00 3.86
3572 5622 2.054453 GCCTTGTCAATGCCCCCTC 61.054 63.158 1.64 0.00 0.00 4.30
3573 5623 2.037847 GCCTTGTCAATGCCCCCT 59.962 61.111 1.64 0.00 0.00 4.79
3574 5624 3.076916 GGCCTTGTCAATGCCCCC 61.077 66.667 18.38 0.00 39.30 5.40
3575 5625 2.283821 TGGCCTTGTCAATGCCCC 60.284 61.111 24.07 5.93 44.72 5.80
3577 5627 1.805428 AACGTGGCCTTGTCAATGCC 61.805 55.000 21.34 21.34 45.56 4.40
3578 5628 0.664166 CAACGTGGCCTTGTCAATGC 60.664 55.000 3.32 4.39 0.00 3.56
3580 5630 2.340427 CCAACGTGGCCTTGTCAAT 58.660 52.632 3.32 0.00 0.00 2.57
3581 5631 3.834726 CCAACGTGGCCTTGTCAA 58.165 55.556 3.32 0.00 0.00 3.18
3591 5641 4.072088 GAACGAGCCGCCAACGTG 62.072 66.667 8.24 0.00 40.10 4.49
3592 5642 4.295119 AGAACGAGCCGCCAACGT 62.295 61.111 0.00 0.00 41.97 3.99
3594 5644 2.357034 TCAGAACGAGCCGCCAAC 60.357 61.111 0.00 0.00 0.00 3.77
3605 5655 3.112709 GAGGCGTGCCGTCAGAAC 61.113 66.667 5.02 0.00 41.95 3.01
3606 5656 4.717629 CGAGGCGTGCCGTCAGAA 62.718 66.667 5.02 0.00 41.95 3.02
3614 5664 2.791396 TACTGAACGACGAGGCGTGC 62.791 60.000 4.20 2.93 44.86 5.34
3615 5665 0.793478 CTACTGAACGACGAGGCGTG 60.793 60.000 4.20 0.00 44.86 5.34
3617 5667 0.520827 GACTACTGAACGACGAGGCG 60.521 60.000 0.00 0.00 37.29 5.52
3618 5668 0.803740 AGACTACTGAACGACGAGGC 59.196 55.000 0.00 0.00 0.00 4.70
3619 5669 2.074576 TGAGACTACTGAACGACGAGG 58.925 52.381 0.00 0.00 0.00 4.63
3621 5671 3.036075 TCTGAGACTACTGAACGACGA 57.964 47.619 0.00 0.00 0.00 4.20
3622 5672 3.808116 TTCTGAGACTACTGAACGACG 57.192 47.619 0.00 0.00 0.00 5.12
3623 5673 5.122554 TGAGATTCTGAGACTACTGAACGAC 59.877 44.000 0.00 0.00 32.42 4.34
3624 5674 5.246307 TGAGATTCTGAGACTACTGAACGA 58.754 41.667 0.00 0.00 32.42 3.85
3625 5675 5.553290 TGAGATTCTGAGACTACTGAACG 57.447 43.478 0.00 0.00 32.42 3.95
3626 5676 7.319646 ACATTGAGATTCTGAGACTACTGAAC 58.680 38.462 0.00 0.00 32.42 3.18
3627 5677 7.473735 ACATTGAGATTCTGAGACTACTGAA 57.526 36.000 0.00 0.00 33.67 3.02
3628 5678 8.581253 TTACATTGAGATTCTGAGACTACTGA 57.419 34.615 0.00 0.00 0.00 3.41
3629 5679 9.814899 AATTACATTGAGATTCTGAGACTACTG 57.185 33.333 0.00 0.00 0.00 2.74
3674 6617 9.453325 TTTTAAATGTTTAGCGGAAGTACAAAG 57.547 29.630 0.00 0.00 0.00 2.77
3708 6651 8.415553 GCTAGGTTTTCTTTAACAAAAAGGGTA 58.584 33.333 0.00 0.00 0.00 3.69
3710 6653 7.269316 TGCTAGGTTTTCTTTAACAAAAAGGG 58.731 34.615 0.00 0.00 0.00 3.95
3712 6655 8.275632 GCATGCTAGGTTTTCTTTAACAAAAAG 58.724 33.333 11.37 0.00 0.00 2.27
3717 6660 5.048083 CCAGCATGCTAGGTTTTCTTTAACA 60.048 40.000 22.19 0.00 31.97 2.41
3724 6667 0.099436 CGCCAGCATGCTAGGTTTTC 59.901 55.000 22.19 10.01 31.97 2.29
3750 6693 0.179000 CACATAGGAGTGGGTGGAGC 59.821 60.000 0.00 0.00 35.88 4.70
3752 6695 0.252696 AGCACATAGGAGTGGGTGGA 60.253 55.000 0.00 0.00 39.87 4.02
3753 6696 0.179000 GAGCACATAGGAGTGGGTGG 59.821 60.000 0.00 0.00 39.87 4.61
3759 6702 1.961180 GCCGTGGAGCACATAGGAGT 61.961 60.000 9.07 0.00 33.40 3.85
3761 6704 2.731571 GGCCGTGGAGCACATAGGA 61.732 63.158 0.00 0.00 33.40 2.94
3810 6757 1.587613 CTAGCAAGCCGAGCTCGTC 60.588 63.158 32.41 22.68 42.32 4.20
3815 6762 1.227118 GGAGTCTAGCAAGCCGAGC 60.227 63.158 0.00 0.00 0.00 5.03
3823 6770 1.592400 CGACGGGTTGGAGTCTAGCA 61.592 60.000 0.00 0.00 35.38 3.49
3840 6787 1.107538 CAGGACTAATCGGAGGGCGA 61.108 60.000 0.00 0.00 0.00 5.54
3841 6788 1.364171 CAGGACTAATCGGAGGGCG 59.636 63.158 0.00 0.00 0.00 6.13
3844 6791 1.051812 ATGGCAGGACTAATCGGAGG 58.948 55.000 0.00 0.00 0.00 4.30
3849 6796 1.544314 GGAGCCATGGCAGGACTAATC 60.544 57.143 37.18 22.53 44.88 1.75
3852 6799 2.072487 GGGAGCCATGGCAGGACTA 61.072 63.158 37.18 0.00 44.88 2.59
3854 6801 4.512914 GGGGAGCCATGGCAGGAC 62.513 72.222 37.18 23.00 44.88 3.85
3863 6810 2.445845 CGATAGGTGGGGGAGCCA 60.446 66.667 0.00 0.00 0.00 4.75
3865 6812 1.749334 CTGTCGATAGGTGGGGGAGC 61.749 65.000 0.40 0.00 0.00 4.70
3881 6828 2.591715 GAGCCGCACAACACCTGT 60.592 61.111 0.00 0.00 39.56 4.00
3894 6841 1.224870 GCAAGGACTAAGGGGAGCC 59.775 63.158 0.00 0.00 0.00 4.70
3895 6842 1.224870 GGCAAGGACTAAGGGGAGC 59.775 63.158 0.00 0.00 0.00 4.70
3902 6849 0.252103 AGGTCTCGGGCAAGGACTAA 60.252 55.000 0.00 0.00 0.00 2.24
3903 6850 0.252103 AAGGTCTCGGGCAAGGACTA 60.252 55.000 0.00 0.00 0.00 2.59
3905 6852 1.376037 CAAGGTCTCGGGCAAGGAC 60.376 63.158 0.00 0.00 0.00 3.85
3907 6854 2.747855 GCAAGGTCTCGGGCAAGG 60.748 66.667 0.00 0.00 0.00 3.61
3908 6855 0.036388 TAAGCAAGGTCTCGGGCAAG 60.036 55.000 0.00 0.00 0.00 4.01
3911 6858 1.751437 AATTAAGCAAGGTCTCGGGC 58.249 50.000 0.00 0.00 0.00 6.13
3912 6859 3.343617 TCAAATTAAGCAAGGTCTCGGG 58.656 45.455 0.00 0.00 0.00 5.14
3913 6860 4.253685 TCTCAAATTAAGCAAGGTCTCGG 58.746 43.478 0.00 0.00 0.00 4.63
3914 6861 5.007136 GGATCTCAAATTAAGCAAGGTCTCG 59.993 44.000 0.00 0.00 0.00 4.04
3915 6862 5.882557 TGGATCTCAAATTAAGCAAGGTCTC 59.117 40.000 0.00 0.00 0.00 3.36
3916 6863 5.819991 TGGATCTCAAATTAAGCAAGGTCT 58.180 37.500 0.00 0.00 0.00 3.85
3917 6864 6.515272 TTGGATCTCAAATTAAGCAAGGTC 57.485 37.500 0.00 0.00 31.46 3.85
3918 6865 6.127253 CCATTGGATCTCAAATTAAGCAAGGT 60.127 38.462 0.00 0.00 39.05 3.50
3919 6866 6.097270 TCCATTGGATCTCAAATTAAGCAAGG 59.903 38.462 0.00 0.00 39.05 3.61
3925 6872 6.891361 TGCTCTTCCATTGGATCTCAAATTAA 59.109 34.615 6.15 0.00 39.05 1.40
3926 6873 6.425735 TGCTCTTCCATTGGATCTCAAATTA 58.574 36.000 6.15 0.00 39.05 1.40
3935 6882 0.106318 GGCCTGCTCTTCCATTGGAT 60.106 55.000 6.15 0.00 0.00 3.41
3936 6883 1.304282 GGCCTGCTCTTCCATTGGA 59.696 57.895 0.00 0.00 0.00 3.53
3937 6884 2.117156 CGGCCTGCTCTTCCATTGG 61.117 63.158 0.00 0.00 0.00 3.16
3938 6885 2.768492 GCGGCCTGCTCTTCCATTG 61.768 63.158 11.61 0.00 41.73 2.82
3939 6886 2.439156 GCGGCCTGCTCTTCCATT 60.439 61.111 11.61 0.00 41.73 3.16
3953 6900 4.303603 CTTGATCATGCGCGGCGG 62.304 66.667 25.03 7.70 0.00 6.13
3955 6902 2.630317 CTCTTGATCATGCGCGGC 59.370 61.111 8.83 0.00 0.00 6.53
3983 6930 2.031314 TGCGGCGGCTAAGAACAA 59.969 55.556 17.76 0.00 40.82 2.83
3985 6932 3.865830 GCTGCGGCGGCTAAGAAC 61.866 66.667 25.88 0.00 40.82 3.01
4001 6948 2.588877 ATGGACGCTGCATACGGC 60.589 61.111 13.11 10.08 45.32 5.68
4004 6951 0.236711 GCATCATGGACGCTGCATAC 59.763 55.000 0.00 0.00 34.77 2.39
4006 6953 1.153025 AGCATCATGGACGCTGCAT 60.153 52.632 0.00 0.00 37.09 3.96
4007 6954 1.816679 GAGCATCATGGACGCTGCA 60.817 57.895 8.82 0.00 28.87 4.41
4008 6955 0.249615 TAGAGCATCATGGACGCTGC 60.250 55.000 8.82 3.75 28.87 5.25
4009 6956 2.229675 TTAGAGCATCATGGACGCTG 57.770 50.000 8.82 0.00 28.87 5.18
4013 6960 3.062763 CACGGATTAGAGCATCATGGAC 58.937 50.000 0.00 0.00 37.82 4.02
4024 6971 1.107538 CGGGCTCCTCACGGATTAGA 61.108 60.000 0.00 0.00 39.01 2.10
4025 6972 1.364171 CGGGCTCCTCACGGATTAG 59.636 63.158 0.00 0.00 39.01 1.73
4026 6973 3.533720 CGGGCTCCTCACGGATTA 58.466 61.111 0.00 0.00 39.01 1.75
4033 6980 2.523740 TACCATCACCGGGCTCCTCA 62.524 60.000 6.32 0.00 0.00 3.86
4042 6989 2.890474 GCGGCTGTACCATCACCG 60.890 66.667 0.00 0.00 46.50 4.94
4044 6991 3.564027 GCGCGGCTGTACCATCAC 61.564 66.667 8.83 0.00 39.03 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.