Multiple sequence alignment - TraesCS3D01G477800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G477800 chr3D 100.000 2754 0 0 1 2754 577669726 577666973 0.000000e+00 5086.0
1 TraesCS3D01G477800 chr3D 93.053 1094 58 8 757 1844 578040812 578041893 0.000000e+00 1583.0
2 TraesCS3D01G477800 chr3D 91.623 1134 66 7 725 1851 577753036 577751925 0.000000e+00 1541.0
3 TraesCS3D01G477800 chr3D 89.674 1104 82 18 757 1851 577779877 577778797 0.000000e+00 1378.0
4 TraesCS3D01G477800 chr3D 92.273 880 51 6 1877 2754 578041894 578042758 0.000000e+00 1232.0
5 TraesCS3D01G477800 chr3D 82.323 792 108 19 1903 2669 577778793 577778009 0.000000e+00 658.0
6 TraesCS3D01G477800 chr3D 93.160 307 12 3 39 338 557941986 557942290 2.520000e-120 442.0
7 TraesCS3D01G477800 chr3D 90.942 276 11 5 342 603 577753308 577753033 2.610000e-95 359.0
8 TraesCS3D01G477800 chr3D 89.109 202 13 3 150 344 93571102 93570903 2.740000e-60 243.0
9 TraesCS3D01G477800 chr3D 90.659 182 14 2 2574 2752 577744050 577743869 3.540000e-59 239.0
10 TraesCS3D01G477800 chr3D 88.945 199 13 3 150 341 121366495 121366691 1.270000e-58 237.0
11 TraesCS3D01G477800 chr3D 87.624 202 16 3 150 344 178007681 178007482 2.760000e-55 226.0
12 TraesCS3D01G477800 chr3D 92.806 139 9 1 593 731 606951442 606951305 1.670000e-47 200.0
13 TraesCS3D01G477800 chr3D 93.421 76 5 0 511 586 578040525 578040600 2.240000e-21 113.0
14 TraesCS3D01G477800 chr3D 87.879 99 6 2 511 603 577780164 577780066 8.060000e-21 111.0
15 TraesCS3D01G477800 chr3B 92.174 2019 116 12 757 2754 771241744 771243741 0.000000e+00 2815.0
16 TraesCS3D01G477800 chr3B 93.303 1090 57 9 1666 2754 771179186 771180260 0.000000e+00 1594.0
17 TraesCS3D01G477800 chr3B 92.954 1107 56 8 757 1844 770964974 770963871 0.000000e+00 1592.0
18 TraesCS3D01G477800 chr3B 91.190 874 52 12 1883 2754 770963865 770963015 0.000000e+00 1164.0
19 TraesCS3D01G477800 chr3B 88.000 925 56 13 757 1664 771178210 771179096 0.000000e+00 1042.0
20 TraesCS3D01G477800 chr3B 90.667 150 12 2 600 748 50421334 50421186 6.020000e-47 198.0
21 TraesCS3D01G477800 chr3B 90.789 76 7 0 511 586 771241458 771241533 4.850000e-18 102.0
22 TraesCS3D01G477800 chr3B 94.340 53 2 1 511 563 771177913 771177964 2.270000e-11 80.5
23 TraesCS3D01G477800 chr3A 89.346 2065 161 37 725 2753 713308541 713306500 0.000000e+00 2540.0
24 TraesCS3D01G477800 chr3A 87.739 1827 189 26 944 2754 713342779 713340972 0.000000e+00 2100.0
25 TraesCS3D01G477800 chr3A 84.756 820 110 10 1382 2195 713417774 713416964 0.000000e+00 808.0
26 TraesCS3D01G477800 chr3A 90.359 612 39 8 757 1352 713418378 713417771 0.000000e+00 785.0
27 TraesCS3D01G477800 chr3A 75.647 464 91 17 1927 2381 688007215 688007665 7.730000e-51 211.0
28 TraesCS3D01G477800 chr3A 95.420 131 5 1 598 728 336623475 336623604 1.000000e-49 207.0
29 TraesCS3D01G477800 chr3A 94.737 95 5 0 344 438 86080386 86080480 6.140000e-32 148.0
30 TraesCS3D01G477800 chr4D 93.391 348 8 5 1 341 403282032 403281693 4.090000e-138 501.0
31 TraesCS3D01G477800 chr4D 92.258 310 15 4 39 341 222462307 222462000 5.450000e-117 431.0
32 TraesCS3D01G477800 chr4D 88.837 215 14 4 150 357 370639898 370639687 3.520000e-64 255.0
33 TraesCS3D01G477800 chr4D 87.940 199 15 3 150 341 473931737 473931933 2.760000e-55 226.0
34 TraesCS3D01G477800 chr4D 93.007 143 7 3 596 736 117643941 117644082 3.600000e-49 206.0
35 TraesCS3D01G477800 chr4D 81.871 171 23 6 1925 2091 82287815 82287981 1.330000e-28 137.0
36 TraesCS3D01G477800 chr5D 94.212 311 10 2 39 342 449956179 449956488 4.150000e-128 468.0
37 TraesCS3D01G477800 chr5D 90.500 200 10 3 150 342 362796674 362796871 3.520000e-64 255.0
38 TraesCS3D01G477800 chr5D 73.697 422 103 8 1956 2371 558928427 558928846 1.020000e-34 158.0
39 TraesCS3D01G477800 chr5D 94.681 94 5 0 342 435 82958812 82958719 2.210000e-31 147.0
40 TraesCS3D01G477800 chr5D 94.681 94 5 0 343 436 352174703 352174610 2.210000e-31 147.0
41 TraesCS3D01G477800 chr5D 94.737 95 4 1 342 436 490718768 490718861 2.210000e-31 147.0
42 TraesCS3D01G477800 chr1D 93.548 310 11 3 39 341 396569688 396569381 1.160000e-123 453.0
43 TraesCS3D01G477800 chr1D 92.605 311 14 3 39 342 49706235 49705927 3.260000e-119 438.0
44 TraesCS3D01G477800 chr1D 89.109 303 16 8 39 341 488783386 488783101 7.250000e-96 361.0
45 TraesCS3D01G477800 chr1D 76.380 453 82 17 1937 2381 458764864 458765299 1.280000e-53 220.0
46 TraesCS3D01G477800 chr1D 76.786 280 53 8 1927 2199 298496971 298497245 2.210000e-31 147.0
47 TraesCS3D01G477800 chr1D 77.778 243 49 4 2140 2380 442907665 442907904 7.950000e-31 145.0
48 TraesCS3D01G477800 chr1D 100.000 40 0 0 1 40 91524823 91524862 1.060000e-09 75.0
49 TraesCS3D01G477800 chr7D 92.652 313 15 3 39 345 371383680 371383990 7.000000e-121 444.0
50 TraesCS3D01G477800 chr7D 93.939 264 13 1 2 265 592378370 592378630 1.990000e-106 396.0
51 TraesCS3D01G477800 chr7D 88.670 203 13 4 150 344 556086283 556086083 3.540000e-59 239.0
52 TraesCS3D01G477800 chr7D 94.118 136 8 0 600 735 251035922 251036057 1.000000e-49 207.0
53 TraesCS3D01G477800 chr7D 85.859 99 13 1 338 436 275347518 275347421 1.350000e-18 104.0
54 TraesCS3D01G477800 chr2A 78.481 474 89 12 1925 2391 726134181 726134648 5.770000e-77 298.0
55 TraesCS3D01G477800 chr2A 76.803 319 68 5 1925 2239 2741859 2742175 1.010000e-39 174.0
56 TraesCS3D01G477800 chr4B 76.891 476 91 15 1925 2392 171021290 171020826 4.550000e-63 252.0
57 TraesCS3D01G477800 chr4B 72.938 388 89 12 1953 2336 142672672 142672297 1.340000e-23 121.0
58 TraesCS3D01G477800 chr1B 77.752 427 84 10 1953 2371 550636878 550637301 4.550000e-63 252.0
59 TraesCS3D01G477800 chr1B 75.943 424 89 9 1955 2371 550863567 550863984 3.600000e-49 206.0
60 TraesCS3D01G477800 chr1B 100.000 40 0 0 1 40 666902821 666902782 1.060000e-09 75.0
61 TraesCS3D01G477800 chr1B 85.714 63 9 0 2060 2122 584136553 584136615 1.770000e-07 67.6
62 TraesCS3D01G477800 chrUn 86.408 206 19 4 150 348 104160119 104159916 1.660000e-52 217.0
63 TraesCS3D01G477800 chrUn 73.737 297 57 16 1 284 66131479 66131767 2.260000e-16 97.1
64 TraesCS3D01G477800 chr4A 95.455 132 6 0 599 730 443900933 443900802 7.730000e-51 211.0
65 TraesCS3D01G477800 chr4A 95.699 93 4 0 344 436 554930307 554930215 1.710000e-32 150.0
66 TraesCS3D01G477800 chr4A 77.637 237 52 1 2103 2338 658070187 658069951 2.860000e-30 143.0
67 TraesCS3D01G477800 chr4A 91.892 74 6 0 357 430 5400299 5400372 1.350000e-18 104.0
68 TraesCS3D01G477800 chr4A 79.279 111 21 2 2219 2329 96013974 96014082 2.940000e-10 76.8
69 TraesCS3D01G477800 chr7A 94.697 132 7 0 597 728 645075961 645075830 3.600000e-49 206.0
70 TraesCS3D01G477800 chr7A 92.135 89 7 0 348 436 649595388 649595476 2.880000e-25 126.0
71 TraesCS3D01G477800 chr6A 76.000 400 90 6 1925 2321 438276323 438275927 4.650000e-48 202.0
72 TraesCS3D01G477800 chr6A 75.887 141 27 5 2000 2136 608789534 608789671 6.370000e-07 65.8
73 TraesCS3D01G477800 chr5B 92.254 142 11 0 592 733 226429818 226429677 4.650000e-48 202.0
74 TraesCS3D01G477800 chr5B 76.142 394 66 18 1936 2323 464314772 464314401 6.060000e-42 182.0
75 TraesCS3D01G477800 chr2B 92.806 139 10 0 590 728 384618094 384617956 4.650000e-48 202.0
76 TraesCS3D01G477800 chr2B 76.323 359 49 17 1 342 40649163 40649502 2.840000e-35 159.0
77 TraesCS3D01G477800 chr6B 77.222 360 41 25 1 341 245114031 245113694 3.650000e-39 172.0
78 TraesCS3D01G477800 chr6B 83.916 143 9 6 342 470 662983641 662983499 1.040000e-24 124.0
79 TraesCS3D01G477800 chr2D 78.058 278 55 6 1925 2200 430613347 430613620 1.310000e-38 171.0
80 TraesCS3D01G477800 chr2D 92.632 95 7 0 342 436 406417681 406417587 1.330000e-28 137.0
81 TraesCS3D01G477800 chr7B 95.506 89 4 0 348 436 423210188 423210100 2.860000e-30 143.0
82 TraesCS3D01G477800 chr7B 86.047 129 10 4 342 470 671751771 671751891 6.190000e-27 132.0
83 TraesCS3D01G477800 chr5A 75.768 293 48 16 64 341 252260800 252260516 2.880000e-25 126.0
84 TraesCS3D01G477800 chr5A 74.792 361 42 23 1 342 236312334 236312004 1.730000e-22 117.0
85 TraesCS3D01G477800 chr5A 74.249 233 50 10 1925 2151 414421077 414420849 3.780000e-14 89.8
86 TraesCS3D01G477800 chr1A 73.463 309 75 5 1936 2239 345061946 345062252 2.900000e-20 110.0
87 TraesCS3D01G477800 chr6D 73.832 321 58 18 1925 2239 293319594 293319294 1.350000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G477800 chr3D 577666973 577669726 2753 True 5086.000000 5086 100.000000 1 2754 1 chr3D.!!$R3 2753
1 TraesCS3D01G477800 chr3D 578040525 578042758 2233 False 976.000000 1583 92.915667 511 2754 3 chr3D.!!$F3 2243
2 TraesCS3D01G477800 chr3D 577751925 577753308 1383 True 950.000000 1541 91.282500 342 1851 2 chr3D.!!$R6 1509
3 TraesCS3D01G477800 chr3D 577778009 577780164 2155 True 715.666667 1378 86.625333 511 2669 3 chr3D.!!$R7 2158
4 TraesCS3D01G477800 chr3B 771241458 771243741 2283 False 1458.500000 2815 91.481500 511 2754 2 chr3B.!!$F2 2243
5 TraesCS3D01G477800 chr3B 770963015 770964974 1959 True 1378.000000 1592 92.072000 757 2754 2 chr3B.!!$R2 1997
6 TraesCS3D01G477800 chr3B 771177913 771180260 2347 False 905.500000 1594 91.881000 511 2754 3 chr3B.!!$F1 2243
7 TraesCS3D01G477800 chr3A 713306500 713308541 2041 True 2540.000000 2540 89.346000 725 2753 1 chr3A.!!$R1 2028
8 TraesCS3D01G477800 chr3A 713340972 713342779 1807 True 2100.000000 2100 87.739000 944 2754 1 chr3A.!!$R2 1810
9 TraesCS3D01G477800 chr3A 713416964 713418378 1414 True 796.500000 808 87.557500 757 2195 2 chr3A.!!$R3 1438

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
586 610 0.107945 CTCGGGGCCTTTGAGAAGAG 60.108 60.0 13.41 0.0 34.71 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2044 2390 0.463654 TGGCGACAGTTGCTGTTCTT 60.464 50.0 12.78 0.0 45.44 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.857437 GAATTAAATGGGGCAATATAGGCT 57.143 37.500 0.00 0.00 0.00 4.58
24 25 6.857437 AATTAAATGGGGCAATATAGGCTC 57.143 37.500 0.00 0.00 34.63 4.70
25 26 5.599048 TTAAATGGGGCAATATAGGCTCT 57.401 39.130 0.00 0.00 35.21 4.09
26 27 4.475919 AAATGGGGCAATATAGGCTCTT 57.524 40.909 0.00 0.00 35.21 2.85
27 28 4.475919 AATGGGGCAATATAGGCTCTTT 57.524 40.909 0.00 0.00 35.21 2.52
28 29 3.228188 TGGGGCAATATAGGCTCTTTG 57.772 47.619 0.00 0.00 35.21 2.77
29 30 1.889170 GGGGCAATATAGGCTCTTTGC 59.111 52.381 16.30 16.30 42.81 3.68
47 48 1.807886 CCATCTGCTGGCTCTTTGC 59.192 57.895 0.00 0.00 38.47 3.68
72 73 2.669569 TGGCAGACGGCAAAGAGC 60.670 61.111 0.00 0.00 46.20 4.09
84 85 4.386413 AAGAGCCAGTCTTTGCCG 57.614 55.556 0.00 0.00 43.54 5.69
85 86 1.451936 AAGAGCCAGTCTTTGCCGT 59.548 52.632 0.00 0.00 43.54 5.68
86 87 0.603975 AAGAGCCAGTCTTTGCCGTC 60.604 55.000 0.00 0.00 43.54 4.79
87 88 1.004440 GAGCCAGTCTTTGCCGTCT 60.004 57.895 0.00 0.00 0.00 4.18
88 89 1.294659 GAGCCAGTCTTTGCCGTCTG 61.295 60.000 0.00 0.00 0.00 3.51
89 90 2.970974 GCCAGTCTTTGCCGTCTGC 61.971 63.158 0.00 0.00 41.77 4.26
90 91 2.328099 CCAGTCTTTGCCGTCTGCC 61.328 63.158 0.00 0.00 40.16 4.85
91 92 1.597854 CAGTCTTTGCCGTCTGCCA 60.598 57.895 0.00 0.00 40.16 4.92
92 93 1.302033 AGTCTTTGCCGTCTGCCAG 60.302 57.895 0.00 0.00 40.16 4.85
93 94 2.669569 TCTTTGCCGTCTGCCAGC 60.670 61.111 0.00 0.00 40.16 4.85
94 95 2.979676 CTTTGCCGTCTGCCAGCA 60.980 61.111 0.00 0.00 40.16 4.41
95 96 2.974489 CTTTGCCGTCTGCCAGCAG 61.974 63.158 13.54 13.54 44.86 4.24
119 120 0.169672 CAAAGAGCCAGTCATTGCCG 59.830 55.000 0.00 0.00 27.66 5.69
120 121 0.250901 AAAGAGCCAGTCATTGCCGT 60.251 50.000 0.00 0.00 0.00 5.68
121 122 0.674895 AAGAGCCAGTCATTGCCGTC 60.675 55.000 0.00 0.00 0.00 4.79
122 123 1.078848 GAGCCAGTCATTGCCGTCT 60.079 57.895 0.00 0.00 0.00 4.18
123 124 1.364626 GAGCCAGTCATTGCCGTCTG 61.365 60.000 0.00 0.00 0.00 3.51
124 125 3.044059 GCCAGTCATTGCCGTCTGC 62.044 63.158 0.00 0.00 41.77 4.26
125 126 2.401766 CCAGTCATTGCCGTCTGCC 61.402 63.158 0.00 0.00 40.16 4.85
126 127 1.672030 CAGTCATTGCCGTCTGCCA 60.672 57.895 0.00 0.00 40.16 4.92
127 128 1.376424 AGTCATTGCCGTCTGCCAG 60.376 57.895 0.00 0.00 40.16 4.85
128 129 2.747460 TCATTGCCGTCTGCCAGC 60.747 61.111 0.00 0.00 40.16 4.85
129 130 3.057548 CATTGCCGTCTGCCAGCA 61.058 61.111 0.00 0.00 40.16 4.41
130 131 2.749044 ATTGCCGTCTGCCAGCAG 60.749 61.111 13.54 13.54 44.86 4.24
143 144 1.673168 CCAGCAGATGGTAAAGAGCC 58.327 55.000 0.00 0.00 44.91 4.70
144 145 1.065199 CCAGCAGATGGTAAAGAGCCA 60.065 52.381 0.00 0.00 44.91 4.75
146 147 2.617308 CAGCAGATGGTAAAGAGCCATG 59.383 50.000 1.16 0.00 45.87 3.66
147 148 2.507058 AGCAGATGGTAAAGAGCCATGA 59.493 45.455 1.16 0.00 45.87 3.07
148 149 2.615912 GCAGATGGTAAAGAGCCATGAC 59.384 50.000 1.16 0.00 45.87 3.06
149 150 3.209410 CAGATGGTAAAGAGCCATGACC 58.791 50.000 1.16 0.00 45.87 4.02
150 151 3.118112 CAGATGGTAAAGAGCCATGACCT 60.118 47.826 1.16 0.00 45.87 3.85
151 152 3.525199 AGATGGTAAAGAGCCATGACCTT 59.475 43.478 1.16 0.00 45.87 3.50
152 153 3.806949 TGGTAAAGAGCCATGACCTTT 57.193 42.857 0.00 3.40 34.81 3.11
153 154 3.420893 TGGTAAAGAGCCATGACCTTTG 58.579 45.455 13.51 0.00 32.92 2.77
154 155 2.164422 GGTAAAGAGCCATGACCTTTGC 59.836 50.000 13.51 12.32 33.66 3.68
155 156 1.260544 AAAGAGCCATGACCTTTGCC 58.739 50.000 0.00 0.00 0.00 4.52
156 157 0.962356 AAGAGCCATGACCTTTGCCG 60.962 55.000 0.00 0.00 0.00 5.69
157 158 1.675641 GAGCCATGACCTTTGCCGT 60.676 57.895 0.00 0.00 0.00 5.68
158 159 1.648467 GAGCCATGACCTTTGCCGTC 61.648 60.000 0.00 0.00 0.00 4.79
159 160 2.700773 GCCATGACCTTTGCCGTCC 61.701 63.158 0.00 0.00 0.00 4.79
160 161 2.398554 CCATGACCTTTGCCGTCCG 61.399 63.158 0.00 0.00 0.00 4.79
161 162 2.746277 ATGACCTTTGCCGTCCGC 60.746 61.111 0.00 0.00 38.31 5.54
162 163 3.254024 ATGACCTTTGCCGTCCGCT 62.254 57.895 0.00 0.00 38.78 5.52
163 164 3.423154 GACCTTTGCCGTCCGCTG 61.423 66.667 0.00 0.00 38.78 5.18
195 196 2.362889 CCCCTTTGCCATCCGCTT 60.363 61.111 0.00 0.00 38.78 4.68
196 197 2.418083 CCCCTTTGCCATCCGCTTC 61.418 63.158 0.00 0.00 38.78 3.86
197 198 1.678635 CCCTTTGCCATCCGCTTCA 60.679 57.895 0.00 0.00 38.78 3.02
198 199 1.250154 CCCTTTGCCATCCGCTTCAA 61.250 55.000 0.00 0.00 38.78 2.69
199 200 0.602562 CCTTTGCCATCCGCTTCAAA 59.397 50.000 0.00 0.00 38.78 2.69
200 201 1.000731 CCTTTGCCATCCGCTTCAAAA 59.999 47.619 0.00 0.00 38.78 2.44
201 202 2.547642 CCTTTGCCATCCGCTTCAAAAA 60.548 45.455 0.00 0.00 38.78 1.94
202 203 2.437200 TTGCCATCCGCTTCAAAAAG 57.563 45.000 0.00 0.00 38.78 2.27
215 216 5.418310 CTTCAAAAAGCAGACGGTAAAGA 57.582 39.130 0.00 0.00 0.00 2.52
216 217 5.816919 CTTCAAAAAGCAGACGGTAAAGAA 58.183 37.500 0.00 0.00 0.00 2.52
217 218 5.418310 TCAAAAAGCAGACGGTAAAGAAG 57.582 39.130 0.00 0.00 0.00 2.85
218 219 3.898517 AAAAGCAGACGGTAAAGAAGC 57.101 42.857 0.00 0.00 0.00 3.86
219 220 2.841442 AAGCAGACGGTAAAGAAGCT 57.159 45.000 0.00 0.00 0.00 3.74
220 221 2.371910 AGCAGACGGTAAAGAAGCTC 57.628 50.000 0.00 0.00 0.00 4.09
221 222 1.896465 AGCAGACGGTAAAGAAGCTCT 59.104 47.619 0.00 0.00 0.00 4.09
222 223 2.300437 AGCAGACGGTAAAGAAGCTCTT 59.700 45.455 0.00 0.00 38.59 2.85
224 225 4.021368 AGCAGACGGTAAAGAAGCTCTTTA 60.021 41.667 11.83 11.83 44.21 1.85
232 233 3.545366 AAGAAGCTCTTTACCGATCCC 57.455 47.619 0.00 0.00 31.57 3.85
233 234 2.753247 AGAAGCTCTTTACCGATCCCT 58.247 47.619 0.00 0.00 0.00 4.20
234 235 3.912248 AGAAGCTCTTTACCGATCCCTA 58.088 45.455 0.00 0.00 0.00 3.53
235 236 3.637694 AGAAGCTCTTTACCGATCCCTAC 59.362 47.826 0.00 0.00 0.00 3.18
236 237 3.028094 AGCTCTTTACCGATCCCTACA 57.972 47.619 0.00 0.00 0.00 2.74
237 238 3.577919 AGCTCTTTACCGATCCCTACAT 58.422 45.455 0.00 0.00 0.00 2.29
238 239 3.967987 AGCTCTTTACCGATCCCTACATT 59.032 43.478 0.00 0.00 0.00 2.71
239 240 4.058817 GCTCTTTACCGATCCCTACATTG 58.941 47.826 0.00 0.00 0.00 2.82
240 241 4.058817 CTCTTTACCGATCCCTACATTGC 58.941 47.826 0.00 0.00 0.00 3.56
241 242 2.922740 TTACCGATCCCTACATTGCC 57.077 50.000 0.00 0.00 0.00 4.52
242 243 0.677288 TACCGATCCCTACATTGCCG 59.323 55.000 0.00 0.00 0.00 5.69
243 244 1.301716 CCGATCCCTACATTGCCGG 60.302 63.158 0.00 0.00 0.00 6.13
244 245 1.745890 CGATCCCTACATTGCCGGA 59.254 57.895 5.05 0.00 0.00 5.14
245 246 0.319900 CGATCCCTACATTGCCGGAG 60.320 60.000 5.05 0.00 0.00 4.63
246 247 0.603975 GATCCCTACATTGCCGGAGC 60.604 60.000 5.05 0.00 40.48 4.70
247 248 2.056906 ATCCCTACATTGCCGGAGCC 62.057 60.000 5.05 0.00 38.69 4.70
248 249 2.746375 CCCTACATTGCCGGAGCCT 61.746 63.158 5.05 0.00 38.69 4.58
249 250 1.224592 CCTACATTGCCGGAGCCTT 59.775 57.895 5.05 0.00 38.69 4.35
250 251 0.394352 CCTACATTGCCGGAGCCTTT 60.394 55.000 5.05 0.00 38.69 3.11
251 252 1.463674 CTACATTGCCGGAGCCTTTT 58.536 50.000 5.05 0.00 38.69 2.27
252 253 1.133025 CTACATTGCCGGAGCCTTTTG 59.867 52.381 5.05 0.00 38.69 2.44
253 254 1.446618 CATTGCCGGAGCCTTTTGC 60.447 57.895 5.05 0.00 38.69 3.68
254 255 2.649129 ATTGCCGGAGCCTTTTGCC 61.649 57.895 5.05 0.00 42.71 4.52
257 258 3.431725 CCGGAGCCTTTTGCCGTC 61.432 66.667 0.00 0.00 43.35 4.79
258 259 3.431725 CGGAGCCTTTTGCCGTCC 61.432 66.667 0.00 0.00 42.71 4.79
259 260 3.431725 GGAGCCTTTTGCCGTCCG 61.432 66.667 0.00 0.00 42.71 4.79
260 261 4.103103 GAGCCTTTTGCCGTCCGC 62.103 66.667 0.00 0.00 42.71 5.54
286 287 3.508840 CCTTTGCCGTCCGCCATC 61.509 66.667 0.00 0.00 36.24 3.51
287 288 3.508840 CTTTGCCGTCCGCCATCC 61.509 66.667 0.00 0.00 36.24 3.51
288 289 3.976701 CTTTGCCGTCCGCCATCCT 62.977 63.158 0.00 0.00 36.24 3.24
289 290 3.561120 TTTGCCGTCCGCCATCCTT 62.561 57.895 0.00 0.00 36.24 3.36
290 291 4.776322 TGCCGTCCGCCATCCTTG 62.776 66.667 0.00 0.00 36.24 3.61
293 294 4.473520 CGTCCGCCATCCTTGCCT 62.474 66.667 0.00 0.00 0.00 4.75
294 295 2.044946 GTCCGCCATCCTTGCCTT 60.045 61.111 0.00 0.00 0.00 4.35
295 296 1.678970 GTCCGCCATCCTTGCCTTT 60.679 57.895 0.00 0.00 0.00 3.11
296 297 1.678635 TCCGCCATCCTTGCCTTTG 60.679 57.895 0.00 0.00 0.00 2.77
297 298 2.182537 CGCCATCCTTGCCTTTGC 59.817 61.111 0.00 0.00 38.26 3.68
298 299 2.580815 GCCATCCTTGCCTTTGCC 59.419 61.111 0.00 0.00 36.33 4.52
299 300 2.887360 CCATCCTTGCCTTTGCCG 59.113 61.111 0.00 0.00 36.33 5.69
300 301 1.978617 CCATCCTTGCCTTTGCCGT 60.979 57.895 0.00 0.00 36.33 5.68
301 302 1.508088 CATCCTTGCCTTTGCCGTC 59.492 57.895 0.00 0.00 36.33 4.79
302 303 0.962356 CATCCTTGCCTTTGCCGTCT 60.962 55.000 0.00 0.00 36.33 4.18
303 304 0.962356 ATCCTTGCCTTTGCCGTCTG 60.962 55.000 0.00 0.00 36.33 3.51
304 305 2.256461 CTTGCCTTTGCCGTCTGC 59.744 61.111 0.00 0.00 41.77 4.26
305 306 3.273080 CTTGCCTTTGCCGTCTGCC 62.273 63.158 0.00 0.00 40.16 4.85
306 307 4.577677 TGCCTTTGCCGTCTGCCA 62.578 61.111 0.00 0.00 40.16 4.92
307 308 3.064324 GCCTTTGCCGTCTGCCAT 61.064 61.111 0.00 0.00 40.16 4.40
308 309 2.879907 CCTTTGCCGTCTGCCATG 59.120 61.111 0.00 0.00 40.16 3.66
309 310 2.703798 CCTTTGCCGTCTGCCATGG 61.704 63.158 7.63 7.63 40.16 3.66
325 326 2.927004 TGGCAGACGGCAAAAGTAG 58.073 52.632 0.00 0.00 46.20 2.57
326 327 1.234615 TGGCAGACGGCAAAAGTAGC 61.235 55.000 0.00 0.00 46.20 3.58
327 328 2.544726 GCAGACGGCAAAAGTAGCT 58.455 52.632 0.00 0.00 43.97 3.32
328 329 0.166814 GCAGACGGCAAAAGTAGCTG 59.833 55.000 0.00 0.00 43.97 4.24
329 330 1.795768 CAGACGGCAAAAGTAGCTGA 58.204 50.000 0.00 0.00 40.83 4.26
330 331 2.350522 CAGACGGCAAAAGTAGCTGAT 58.649 47.619 0.00 0.00 40.83 2.90
331 332 2.744202 CAGACGGCAAAAGTAGCTGATT 59.256 45.455 0.00 0.00 40.83 2.57
332 333 3.003480 AGACGGCAAAAGTAGCTGATTC 58.997 45.455 0.00 0.00 40.83 2.52
333 334 2.084546 ACGGCAAAAGTAGCTGATTCC 58.915 47.619 0.00 0.00 40.83 3.01
334 335 2.290323 ACGGCAAAAGTAGCTGATTCCT 60.290 45.455 0.00 0.00 40.83 3.36
335 336 2.096496 CGGCAAAAGTAGCTGATTCCTG 59.904 50.000 0.00 0.00 40.83 3.86
336 337 3.084786 GGCAAAAGTAGCTGATTCCTGT 58.915 45.455 0.00 0.00 0.00 4.00
337 338 4.261801 GGCAAAAGTAGCTGATTCCTGTA 58.738 43.478 0.00 0.00 0.00 2.74
338 339 4.333926 GGCAAAAGTAGCTGATTCCTGTAG 59.666 45.833 0.00 0.00 0.00 2.74
339 340 4.938226 GCAAAAGTAGCTGATTCCTGTAGT 59.062 41.667 0.00 0.00 0.00 2.73
340 341 5.163814 GCAAAAGTAGCTGATTCCTGTAGTG 60.164 44.000 0.00 0.00 0.00 2.74
366 367 3.561503 GGCAAAGAACATGTTTACCGTC 58.438 45.455 13.36 0.00 0.00 4.79
421 422 1.519408 GACGGCAAAGAGCTTTACCA 58.481 50.000 11.63 0.00 44.79 3.25
424 425 2.290323 ACGGCAAAGAGCTTTACCATCT 60.290 45.455 11.63 0.00 44.79 2.90
425 426 2.096496 CGGCAAAGAGCTTTACCATCTG 59.904 50.000 11.63 0.00 44.79 2.90
439 454 1.274167 CCATCTGCTTTTGGTGCATGT 59.726 47.619 0.00 0.00 39.86 3.21
446 461 0.533085 TTTTGGTGCATGTCGGACGA 60.533 50.000 3.34 0.00 36.67 4.20
476 491 9.935241 ATAAGCTGATTCCTGTAGTGTATATTG 57.065 33.333 0.00 0.00 0.00 1.90
485 500 5.010314 CCTGTAGTGTATATTGCCGGTAGAA 59.990 44.000 1.90 0.00 0.00 2.10
586 610 0.107945 CTCGGGGCCTTTGAGAAGAG 60.108 60.000 13.41 0.00 34.71 2.85
599 629 8.739972 GCCTTTGAGAAGAGGAATGTTATTAAA 58.260 33.333 0.00 0.00 34.91 1.52
604 634 9.886132 TGAGAAGAGGAATGTTATTAAAGTACC 57.114 33.333 0.00 0.00 0.00 3.34
605 635 9.327628 GAGAAGAGGAATGTTATTAAAGTACCC 57.672 37.037 0.00 0.00 0.00 3.69
606 636 8.272889 AGAAGAGGAATGTTATTAAAGTACCCC 58.727 37.037 0.00 0.00 0.00 4.95
607 637 6.907961 AGAGGAATGTTATTAAAGTACCCCC 58.092 40.000 0.00 0.00 0.00 5.40
608 638 6.681541 AGAGGAATGTTATTAAAGTACCCCCT 59.318 38.462 0.00 0.00 0.00 4.79
609 639 6.907961 AGGAATGTTATTAAAGTACCCCCTC 58.092 40.000 0.00 0.00 0.00 4.30
610 640 6.066690 GGAATGTTATTAAAGTACCCCCTCC 58.933 44.000 0.00 0.00 0.00 4.30
611 641 4.758773 TGTTATTAAAGTACCCCCTCCG 57.241 45.455 0.00 0.00 0.00 4.63
612 642 4.103342 TGTTATTAAAGTACCCCCTCCGT 58.897 43.478 0.00 0.00 0.00 4.69
613 643 4.162131 TGTTATTAAAGTACCCCCTCCGTC 59.838 45.833 0.00 0.00 0.00 4.79
614 644 1.571955 TTAAAGTACCCCCTCCGTCC 58.428 55.000 0.00 0.00 0.00 4.79
615 645 0.325577 TAAAGTACCCCCTCCGTCCC 60.326 60.000 0.00 0.00 0.00 4.46
616 646 2.405522 AAAGTACCCCCTCCGTCCCA 62.406 60.000 0.00 0.00 0.00 4.37
617 647 2.284847 GTACCCCCTCCGTCCCAA 60.285 66.667 0.00 0.00 0.00 4.12
618 648 1.919816 GTACCCCCTCCGTCCCAAA 60.920 63.158 0.00 0.00 0.00 3.28
619 649 1.151855 TACCCCCTCCGTCCCAAAA 60.152 57.895 0.00 0.00 0.00 2.44
620 650 0.550638 TACCCCCTCCGTCCCAAAAT 60.551 55.000 0.00 0.00 0.00 1.82
621 651 1.386550 CCCCCTCCGTCCCAAAATT 59.613 57.895 0.00 0.00 0.00 1.82
622 652 0.683179 CCCCCTCCGTCCCAAAATTC 60.683 60.000 0.00 0.00 0.00 2.17
623 653 0.331616 CCCCTCCGTCCCAAAATTCT 59.668 55.000 0.00 0.00 0.00 2.40
624 654 1.272480 CCCCTCCGTCCCAAAATTCTT 60.272 52.381 0.00 0.00 0.00 2.52
625 655 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
626 656 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
627 657 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
628 658 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
629 659 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
630 660 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
631 661 5.378332 TCCGTCCCAAAATTCTTGTCTTAA 58.622 37.500 0.00 0.00 0.00 1.85
632 662 5.828859 TCCGTCCCAAAATTCTTGTCTTAAA 59.171 36.000 0.00 0.00 0.00 1.52
633 663 6.492087 TCCGTCCCAAAATTCTTGTCTTAAAT 59.508 34.615 0.00 0.00 0.00 1.40
634 664 7.014808 TCCGTCCCAAAATTCTTGTCTTAAATT 59.985 33.333 0.00 0.00 0.00 1.82
635 665 7.655732 CCGTCCCAAAATTCTTGTCTTAAATTT 59.344 33.333 0.00 0.00 34.86 1.82
636 666 8.487176 CGTCCCAAAATTCTTGTCTTAAATTTG 58.513 33.333 0.00 0.00 33.95 2.32
637 667 9.325198 GTCCCAAAATTCTTGTCTTAAATTTGT 57.675 29.630 0.00 0.00 33.95 2.83
638 668 9.541143 TCCCAAAATTCTTGTCTTAAATTTGTC 57.459 29.630 0.00 0.00 33.95 3.18
639 669 9.546428 CCCAAAATTCTTGTCTTAAATTTGTCT 57.454 29.630 0.00 0.00 33.95 3.41
661 691 9.803315 TGTCTAAATACAGATGTATCAAGTCAC 57.197 33.333 5.97 3.82 40.10 3.67
662 692 8.959058 GTCTAAATACAGATGTATCAAGTCACG 58.041 37.037 5.97 0.00 40.10 4.35
663 693 8.683615 TCTAAATACAGATGTATCAAGTCACGT 58.316 33.333 5.97 0.00 40.10 4.49
664 694 9.302345 CTAAATACAGATGTATCAAGTCACGTT 57.698 33.333 5.97 0.00 40.10 3.99
665 695 8.547967 AAATACAGATGTATCAAGTCACGTTT 57.452 30.769 5.97 0.00 40.10 3.60
666 696 8.547967 AATACAGATGTATCAAGTCACGTTTT 57.452 30.769 5.97 0.00 40.10 2.43
667 697 9.647797 AATACAGATGTATCAAGTCACGTTTTA 57.352 29.630 5.97 0.00 40.10 1.52
668 698 7.582435 ACAGATGTATCAAGTCACGTTTTAG 57.418 36.000 0.00 0.00 0.00 1.85
669 699 7.152645 ACAGATGTATCAAGTCACGTTTTAGT 58.847 34.615 0.00 0.00 0.00 2.24
670 700 8.301720 ACAGATGTATCAAGTCACGTTTTAGTA 58.698 33.333 0.00 0.00 0.00 1.82
671 701 8.799091 CAGATGTATCAAGTCACGTTTTAGTAG 58.201 37.037 0.00 0.00 0.00 2.57
672 702 8.521176 AGATGTATCAAGTCACGTTTTAGTAGT 58.479 33.333 0.00 0.00 0.00 2.73
673 703 9.778993 GATGTATCAAGTCACGTTTTAGTAGTA 57.221 33.333 0.00 0.00 0.00 1.82
675 705 9.964303 TGTATCAAGTCACGTTTTAGTAGTAAA 57.036 29.630 0.00 0.00 0.00 2.01
679 709 9.964303 TCAAGTCACGTTTTAGTAGTAAATACA 57.036 29.630 3.61 0.00 36.79 2.29
682 712 9.578439 AGTCACGTTTTAGTAGTAAATACATCC 57.422 33.333 3.61 0.00 36.79 3.51
683 713 8.526681 GTCACGTTTTAGTAGTAAATACATCCG 58.473 37.037 3.61 3.48 36.79 4.18
684 714 8.243426 TCACGTTTTAGTAGTAAATACATCCGT 58.757 33.333 3.61 3.98 36.79 4.69
685 715 9.502145 CACGTTTTAGTAGTAAATACATCCGTA 57.498 33.333 3.61 0.00 36.79 4.02
702 732 8.162878 ACATCCGTATCTAAACGAATCTAAGA 57.837 34.615 0.00 0.00 45.68 2.10
703 733 8.074972 ACATCCGTATCTAAACGAATCTAAGAC 58.925 37.037 0.00 0.00 45.68 3.01
704 734 7.558161 TCCGTATCTAAACGAATCTAAGACA 57.442 36.000 0.00 0.00 45.68 3.41
705 735 7.988737 TCCGTATCTAAACGAATCTAAGACAA 58.011 34.615 0.00 0.00 45.68 3.18
706 736 8.127327 TCCGTATCTAAACGAATCTAAGACAAG 58.873 37.037 0.00 0.00 45.68 3.16
707 737 8.127327 CCGTATCTAAACGAATCTAAGACAAGA 58.873 37.037 0.00 0.00 45.68 3.02
708 738 9.499585 CGTATCTAAACGAATCTAAGACAAGAA 57.500 33.333 0.00 0.00 45.68 2.52
715 745 7.145932 ACGAATCTAAGACAAGAATTTTGGG 57.854 36.000 0.00 0.00 0.00 4.12
716 746 6.940298 ACGAATCTAAGACAAGAATTTTGGGA 59.060 34.615 0.00 0.00 0.00 4.37
717 747 7.094762 ACGAATCTAAGACAAGAATTTTGGGAC 60.095 37.037 0.00 0.00 0.00 4.46
718 748 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
719 749 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
720 750 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
721 751 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
722 752 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
723 753 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
984 1213 0.886563 GCCTGCATCTTTCTGTGCTT 59.113 50.000 0.00 0.00 41.78 3.91
1092 1324 6.599638 GGCAATAGTAAACATCCTTCTCACTT 59.400 38.462 0.00 0.00 0.00 3.16
1476 1708 0.806492 CGTTTTCTCCTCTAGCCCGC 60.806 60.000 0.00 0.00 0.00 6.13
1527 1760 2.158957 ACACAAGTGTCGACATCCAGTT 60.159 45.455 23.12 4.70 40.24 3.16
1590 1829 3.309682 CGTAGGATTGATGATGCACGTTT 59.690 43.478 0.00 0.00 31.39 3.60
1637 1876 6.595682 CCATCTTACCAATTCATGTACTCCT 58.404 40.000 0.00 0.00 0.00 3.69
1664 1906 4.785346 AGTATGGGCTGAGATTGAATGT 57.215 40.909 0.00 0.00 0.00 2.71
1683 2013 9.691362 TTGAATGTTATAAAGAAGTGCCTTTTC 57.309 29.630 0.00 0.00 37.52 2.29
1868 2206 8.814038 ATCTTGAAGATAGCTTACCACATTTT 57.186 30.769 5.78 0.00 32.12 1.82
1939 2280 0.035317 TGTCAGCATTGGAACGAGCT 59.965 50.000 0.00 0.00 37.95 4.09
2028 2373 0.916358 AGACATGGTGCTAAGGCCCT 60.916 55.000 0.00 0.00 37.74 5.19
2044 2390 1.544537 GCCCTACATGACCAACACACA 60.545 52.381 0.00 0.00 0.00 3.72
2063 2409 0.463654 AAGAACAGCAACTGTCGCCA 60.464 50.000 0.00 0.00 44.62 5.69
2183 2529 5.473162 CCGACTGAATCTCATGAGATCTACT 59.527 44.000 33.00 20.50 46.75 2.57
2216 2562 2.126071 CGTGCCCTTCGATGACGT 60.126 61.111 0.00 0.00 40.69 4.34
2247 2594 3.777910 GAAACGGGGGCTAGGCGA 61.778 66.667 10.58 0.00 0.00 5.54
2467 2826 9.720667 GTGTTACCTTGAAAAAGTAAACGTAAT 57.279 29.630 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.665248 AGAGCCTATATTGCCCCATTTAATTC 59.335 38.462 0.00 0.00 0.00 2.17
1 2 6.565036 AGAGCCTATATTGCCCCATTTAATT 58.435 36.000 0.00 0.00 0.00 1.40
2 3 6.157862 AGAGCCTATATTGCCCCATTTAAT 57.842 37.500 0.00 0.00 0.00 1.40
3 4 5.599048 AGAGCCTATATTGCCCCATTTAA 57.401 39.130 0.00 0.00 0.00 1.52
4 5 5.599048 AAGAGCCTATATTGCCCCATTTA 57.401 39.130 0.00 0.00 0.00 1.40
5 6 4.475919 AAGAGCCTATATTGCCCCATTT 57.524 40.909 0.00 0.00 0.00 2.32
6 7 4.154942 CAAAGAGCCTATATTGCCCCATT 58.845 43.478 0.00 0.00 0.00 3.16
7 8 3.771216 CAAAGAGCCTATATTGCCCCAT 58.229 45.455 0.00 0.00 0.00 4.00
8 9 2.752829 GCAAAGAGCCTATATTGCCCCA 60.753 50.000 0.00 0.00 41.67 4.96
9 10 1.889170 GCAAAGAGCCTATATTGCCCC 59.111 52.381 0.00 0.00 41.67 5.80
51 52 2.974489 CTTTGCCGTCTGCCAGCAG 61.974 63.158 13.54 13.54 44.86 4.24
52 53 2.979676 CTTTGCCGTCTGCCAGCA 60.980 61.111 0.00 0.00 40.16 4.41
53 54 2.669569 TCTTTGCCGTCTGCCAGC 60.670 61.111 0.00 0.00 40.16 4.85
54 55 2.684843 GCTCTTTGCCGTCTGCCAG 61.685 63.158 0.00 0.00 40.16 4.85
55 56 2.669569 GCTCTTTGCCGTCTGCCA 60.670 61.111 0.00 0.00 40.16 4.92
72 73 3.257933 GCAGACGGCAAAGACTGG 58.742 61.111 0.00 0.00 43.97 4.00
73 74 1.597854 TGGCAGACGGCAAAGACTG 60.598 57.895 0.00 0.00 46.20 3.51
74 75 2.828868 TGGCAGACGGCAAAGACT 59.171 55.556 0.00 0.00 46.20 3.24
99 100 3.413522 GCAATGACTGGCTCTTTGC 57.586 52.632 10.25 10.25 46.78 3.68
107 108 3.181367 GCAGACGGCAATGACTGG 58.819 61.111 0.00 0.00 43.97 4.00
108 109 1.672030 TGGCAGACGGCAATGACTG 60.672 57.895 0.00 0.00 46.20 3.51
109 110 2.749682 TGGCAGACGGCAATGACT 59.250 55.556 0.00 0.00 46.20 3.41
124 125 2.422519 ATGGCTCTTTACCATCTGCTGG 60.423 50.000 0.00 0.00 44.85 4.85
125 126 2.408271 TGGCTCTTTACCATCTGCTG 57.592 50.000 0.00 0.00 30.29 4.41
126 127 2.507058 TCATGGCTCTTTACCATCTGCT 59.493 45.455 0.00 0.00 44.85 4.24
127 128 2.615912 GTCATGGCTCTTTACCATCTGC 59.384 50.000 0.00 0.00 44.85 4.26
128 129 3.118112 AGGTCATGGCTCTTTACCATCTG 60.118 47.826 0.00 0.00 44.85 2.90
129 130 3.118531 AGGTCATGGCTCTTTACCATCT 58.881 45.455 0.00 0.00 44.85 2.90
130 131 3.567478 AGGTCATGGCTCTTTACCATC 57.433 47.619 0.00 0.00 44.85 3.51
132 133 3.420893 CAAAGGTCATGGCTCTTTACCA 58.579 45.455 11.75 0.00 42.61 3.25
133 134 2.164422 GCAAAGGTCATGGCTCTTTACC 59.836 50.000 11.75 2.10 0.00 2.85
134 135 2.164422 GGCAAAGGTCATGGCTCTTTAC 59.836 50.000 11.75 7.78 39.99 2.01
135 136 2.446435 GGCAAAGGTCATGGCTCTTTA 58.554 47.619 11.75 0.00 39.99 1.85
136 137 1.260544 GGCAAAGGTCATGGCTCTTT 58.739 50.000 7.66 7.66 39.99 2.52
137 138 0.962356 CGGCAAAGGTCATGGCTCTT 60.962 55.000 0.00 0.00 40.88 2.85
138 139 1.377725 CGGCAAAGGTCATGGCTCT 60.378 57.895 0.00 0.00 40.88 4.09
139 140 1.648467 GACGGCAAAGGTCATGGCTC 61.648 60.000 0.00 0.00 40.88 4.70
140 141 1.675641 GACGGCAAAGGTCATGGCT 60.676 57.895 0.00 0.00 40.88 4.75
141 142 2.700773 GGACGGCAAAGGTCATGGC 61.701 63.158 0.00 0.00 39.76 4.40
142 143 2.398554 CGGACGGCAAAGGTCATGG 61.399 63.158 0.00 0.00 36.12 3.66
143 144 3.039202 GCGGACGGCAAAGGTCATG 62.039 63.158 0.00 0.00 42.87 3.07
144 145 2.746277 GCGGACGGCAAAGGTCAT 60.746 61.111 0.00 0.00 42.87 3.06
159 160 4.093952 CTTTGCCGTCTGCCAGCG 62.094 66.667 2.22 2.22 40.16 5.18
160 161 3.741476 CCTTTGCCGTCTGCCAGC 61.741 66.667 0.00 0.00 40.16 4.85
161 162 3.741476 GCCTTTGCCGTCTGCCAG 61.741 66.667 0.00 0.00 40.16 4.85
185 186 2.741930 GCTTTTTGAAGCGGATGGC 58.258 52.632 0.00 0.00 44.05 4.40
192 193 3.619233 TTACCGTCTGCTTTTTGAAGC 57.381 42.857 4.27 4.27 45.67 3.86
193 194 5.418310 TCTTTACCGTCTGCTTTTTGAAG 57.582 39.130 0.00 0.00 0.00 3.02
194 195 5.732247 GCTTCTTTACCGTCTGCTTTTTGAA 60.732 40.000 0.00 0.00 0.00 2.69
195 196 4.261031 GCTTCTTTACCGTCTGCTTTTTGA 60.261 41.667 0.00 0.00 0.00 2.69
196 197 3.975035 GCTTCTTTACCGTCTGCTTTTTG 59.025 43.478 0.00 0.00 0.00 2.44
197 198 3.883489 AGCTTCTTTACCGTCTGCTTTTT 59.117 39.130 0.00 0.00 0.00 1.94
198 199 3.477530 AGCTTCTTTACCGTCTGCTTTT 58.522 40.909 0.00 0.00 0.00 2.27
199 200 3.067833 GAGCTTCTTTACCGTCTGCTTT 58.932 45.455 0.00 0.00 0.00 3.51
200 201 2.300437 AGAGCTTCTTTACCGTCTGCTT 59.700 45.455 0.00 0.00 0.00 3.91
201 202 1.896465 AGAGCTTCTTTACCGTCTGCT 59.104 47.619 0.00 0.00 0.00 4.24
202 203 2.371910 AGAGCTTCTTTACCGTCTGC 57.628 50.000 0.00 0.00 0.00 4.26
210 211 4.715297 AGGGATCGGTAAAGAGCTTCTTTA 59.285 41.667 11.83 11.83 44.21 1.85
212 213 3.108376 AGGGATCGGTAAAGAGCTTCTT 58.892 45.455 0.00 0.00 38.59 2.52
213 214 2.753247 AGGGATCGGTAAAGAGCTTCT 58.247 47.619 0.00 0.00 0.00 2.85
214 215 3.383825 TGTAGGGATCGGTAAAGAGCTTC 59.616 47.826 0.00 0.00 0.00 3.86
215 216 3.371965 TGTAGGGATCGGTAAAGAGCTT 58.628 45.455 0.00 0.00 0.00 3.74
216 217 3.028094 TGTAGGGATCGGTAAAGAGCT 57.972 47.619 0.00 0.00 0.00 4.09
217 218 4.058817 CAATGTAGGGATCGGTAAAGAGC 58.941 47.826 0.00 0.00 0.00 4.09
218 219 4.058817 GCAATGTAGGGATCGGTAAAGAG 58.941 47.826 0.00 0.00 0.00 2.85
219 220 3.181458 GGCAATGTAGGGATCGGTAAAGA 60.181 47.826 0.00 0.00 0.00 2.52
220 221 3.139077 GGCAATGTAGGGATCGGTAAAG 58.861 50.000 0.00 0.00 0.00 1.85
221 222 2.484065 CGGCAATGTAGGGATCGGTAAA 60.484 50.000 0.00 0.00 0.00 2.01
222 223 1.069513 CGGCAATGTAGGGATCGGTAA 59.930 52.381 0.00 0.00 0.00 2.85
223 224 0.677288 CGGCAATGTAGGGATCGGTA 59.323 55.000 0.00 0.00 0.00 4.02
224 225 1.445942 CGGCAATGTAGGGATCGGT 59.554 57.895 0.00 0.00 0.00 4.69
225 226 1.301716 CCGGCAATGTAGGGATCGG 60.302 63.158 0.00 0.00 0.00 4.18
226 227 0.319900 CTCCGGCAATGTAGGGATCG 60.320 60.000 0.00 0.00 0.00 3.69
227 228 0.603975 GCTCCGGCAATGTAGGGATC 60.604 60.000 0.00 0.00 38.54 3.36
228 229 1.451936 GCTCCGGCAATGTAGGGAT 59.548 57.895 0.00 0.00 38.54 3.85
229 230 2.742116 GGCTCCGGCAATGTAGGGA 61.742 63.158 0.00 0.00 40.87 4.20
230 231 2.203209 GGCTCCGGCAATGTAGGG 60.203 66.667 0.00 0.00 40.87 3.53
231 232 0.394352 AAAGGCTCCGGCAATGTAGG 60.394 55.000 0.00 0.00 40.87 3.18
232 233 1.133025 CAAAAGGCTCCGGCAATGTAG 59.867 52.381 0.00 0.00 40.87 2.74
233 234 1.173043 CAAAAGGCTCCGGCAATGTA 58.827 50.000 0.00 0.00 40.87 2.29
234 235 1.966762 CAAAAGGCTCCGGCAATGT 59.033 52.632 0.00 0.00 40.87 2.71
235 236 1.446618 GCAAAAGGCTCCGGCAATG 60.447 57.895 0.00 0.00 40.87 2.82
236 237 2.649129 GGCAAAAGGCTCCGGCAAT 61.649 57.895 0.00 0.00 44.01 3.56
237 238 3.302344 GGCAAAAGGCTCCGGCAA 61.302 61.111 0.00 0.00 44.01 4.52
240 241 3.431725 GACGGCAAAAGGCTCCGG 61.432 66.667 15.66 0.00 46.78 5.14
242 243 3.431725 CGGACGGCAAAAGGCTCC 61.432 66.667 0.00 0.00 44.01 4.70
243 244 4.103103 GCGGACGGCAAAAGGCTC 62.103 66.667 0.00 0.00 44.01 4.70
282 283 1.937546 GACGGCAAAGGCAAGGATGG 61.938 60.000 0.00 0.00 43.71 3.51
283 284 0.962356 AGACGGCAAAGGCAAGGATG 60.962 55.000 0.00 0.00 43.71 3.51
284 285 0.962356 CAGACGGCAAAGGCAAGGAT 60.962 55.000 0.00 0.00 43.71 3.24
285 286 1.600636 CAGACGGCAAAGGCAAGGA 60.601 57.895 0.00 0.00 43.71 3.36
286 287 2.956987 CAGACGGCAAAGGCAAGG 59.043 61.111 0.00 0.00 43.71 3.61
287 288 2.256461 GCAGACGGCAAAGGCAAG 59.744 61.111 0.00 0.00 43.71 4.01
289 290 4.577677 TGGCAGACGGCAAAGGCA 62.578 61.111 0.00 0.00 46.20 4.75
304 305 1.213537 CTTTTGCCGTCTGCCATGG 59.786 57.895 7.63 7.63 40.16 3.66
305 306 1.131126 CTACTTTTGCCGTCTGCCATG 59.869 52.381 0.00 0.00 40.16 3.66
306 307 1.453155 CTACTTTTGCCGTCTGCCAT 58.547 50.000 0.00 0.00 40.16 4.40
307 308 1.234615 GCTACTTTTGCCGTCTGCCA 61.235 55.000 0.00 0.00 40.16 4.92
308 309 0.955919 AGCTACTTTTGCCGTCTGCC 60.956 55.000 0.00 0.00 40.16 4.85
309 310 0.166814 CAGCTACTTTTGCCGTCTGC 59.833 55.000 0.00 0.00 41.77 4.26
310 311 1.795768 TCAGCTACTTTTGCCGTCTG 58.204 50.000 0.00 0.00 0.00 3.51
311 312 2.770164 ATCAGCTACTTTTGCCGTCT 57.230 45.000 0.00 0.00 0.00 4.18
312 313 2.096013 GGAATCAGCTACTTTTGCCGTC 59.904 50.000 0.00 0.00 0.00 4.79
313 314 2.084546 GGAATCAGCTACTTTTGCCGT 58.915 47.619 0.00 0.00 0.00 5.68
314 315 2.096496 CAGGAATCAGCTACTTTTGCCG 59.904 50.000 0.00 0.00 0.00 5.69
315 316 3.084786 ACAGGAATCAGCTACTTTTGCC 58.915 45.455 0.00 0.00 0.00 4.52
316 317 4.938226 ACTACAGGAATCAGCTACTTTTGC 59.062 41.667 0.00 0.00 0.00 3.68
317 318 6.166279 TCACTACAGGAATCAGCTACTTTTG 58.834 40.000 0.00 0.00 0.00 2.44
318 319 6.211584 TCTCACTACAGGAATCAGCTACTTTT 59.788 38.462 0.00 0.00 0.00 2.27
319 320 5.717178 TCTCACTACAGGAATCAGCTACTTT 59.283 40.000 0.00 0.00 0.00 2.66
320 321 5.126384 GTCTCACTACAGGAATCAGCTACTT 59.874 44.000 0.00 0.00 0.00 2.24
321 322 4.642885 GTCTCACTACAGGAATCAGCTACT 59.357 45.833 0.00 0.00 0.00 2.57
322 323 4.496673 CGTCTCACTACAGGAATCAGCTAC 60.497 50.000 0.00 0.00 0.00 3.58
323 324 3.628032 CGTCTCACTACAGGAATCAGCTA 59.372 47.826 0.00 0.00 0.00 3.32
324 325 2.425312 CGTCTCACTACAGGAATCAGCT 59.575 50.000 0.00 0.00 0.00 4.24
325 326 2.480416 CCGTCTCACTACAGGAATCAGC 60.480 54.545 0.00 0.00 0.00 4.26
326 327 2.480416 GCCGTCTCACTACAGGAATCAG 60.480 54.545 0.00 0.00 0.00 2.90
327 328 1.476891 GCCGTCTCACTACAGGAATCA 59.523 52.381 0.00 0.00 0.00 2.57
328 329 1.476891 TGCCGTCTCACTACAGGAATC 59.523 52.381 0.00 0.00 0.00 2.52
329 330 1.557099 TGCCGTCTCACTACAGGAAT 58.443 50.000 0.00 0.00 0.00 3.01
330 331 1.334160 TTGCCGTCTCACTACAGGAA 58.666 50.000 0.00 0.00 0.00 3.36
331 332 1.272490 CTTTGCCGTCTCACTACAGGA 59.728 52.381 0.00 0.00 0.00 3.86
332 333 1.272490 TCTTTGCCGTCTCACTACAGG 59.728 52.381 0.00 0.00 0.00 4.00
333 334 2.724977 TCTTTGCCGTCTCACTACAG 57.275 50.000 0.00 0.00 0.00 2.74
334 335 2.101750 TGTTCTTTGCCGTCTCACTACA 59.898 45.455 0.00 0.00 0.00 2.74
335 336 2.750948 TGTTCTTTGCCGTCTCACTAC 58.249 47.619 0.00 0.00 0.00 2.73
336 337 3.244078 ACATGTTCTTTGCCGTCTCACTA 60.244 43.478 0.00 0.00 0.00 2.74
337 338 2.146342 CATGTTCTTTGCCGTCTCACT 58.854 47.619 0.00 0.00 0.00 3.41
338 339 1.873591 ACATGTTCTTTGCCGTCTCAC 59.126 47.619 0.00 0.00 0.00 3.51
339 340 2.254546 ACATGTTCTTTGCCGTCTCA 57.745 45.000 0.00 0.00 0.00 3.27
340 341 3.626028 AAACATGTTCTTTGCCGTCTC 57.374 42.857 12.39 0.00 0.00 3.36
396 397 3.423154 CTCTTTGCCGTCCGCCAC 61.423 66.667 0.00 0.00 36.24 5.01
421 422 1.200716 CGACATGCACCAAAAGCAGAT 59.799 47.619 0.00 0.00 46.36 2.90
425 426 0.387239 GTCCGACATGCACCAAAAGC 60.387 55.000 0.00 0.00 0.00 3.51
439 454 3.520290 ATCAGCTTATTTGTCGTCCGA 57.480 42.857 0.00 0.00 0.00 4.55
446 461 6.476378 ACACTACAGGAATCAGCTTATTTGT 58.524 36.000 3.99 3.99 0.00 2.83
476 491 2.472909 GCATGTGGCTTCTACCGGC 61.473 63.158 0.00 0.00 40.25 6.13
485 500 0.333993 AGGAATCTTGGCATGTGGCT 59.666 50.000 8.09 0.00 44.01 4.75
586 610 6.066690 GGAGGGGGTACTTTAATAACATTCC 58.933 44.000 0.00 0.00 0.00 3.01
599 629 2.405522 TTTGGGACGGAGGGGGTACT 62.406 60.000 0.00 0.00 0.00 2.73
600 630 1.491274 TTTTGGGACGGAGGGGGTAC 61.491 60.000 0.00 0.00 0.00 3.34
601 631 0.550638 ATTTTGGGACGGAGGGGGTA 60.551 55.000 0.00 0.00 0.00 3.69
602 632 1.440362 AATTTTGGGACGGAGGGGGT 61.440 55.000 0.00 0.00 0.00 4.95
603 633 0.683179 GAATTTTGGGACGGAGGGGG 60.683 60.000 0.00 0.00 0.00 5.40
604 634 0.331616 AGAATTTTGGGACGGAGGGG 59.668 55.000 0.00 0.00 0.00 4.79
605 635 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
606 636 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
607 637 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
608 638 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
609 639 5.699097 TTAAGACAAGAATTTTGGGACGG 57.301 39.130 0.00 0.00 0.00 4.79
610 640 8.487176 CAAATTTAAGACAAGAATTTTGGGACG 58.513 33.333 0.00 0.00 32.35 4.79
611 641 9.325198 ACAAATTTAAGACAAGAATTTTGGGAC 57.675 29.630 0.00 0.00 33.39 4.46
612 642 9.541143 GACAAATTTAAGACAAGAATTTTGGGA 57.459 29.630 0.00 0.00 33.39 4.37
613 643 9.546428 AGACAAATTTAAGACAAGAATTTTGGG 57.454 29.630 0.00 0.00 33.39 4.12
635 665 9.803315 GTGACTTGATACATCTGTATTTAGACA 57.197 33.333 14.44 12.43 40.99 3.41
636 666 8.959058 CGTGACTTGATACATCTGTATTTAGAC 58.041 37.037 14.44 10.85 40.99 2.59
637 667 8.683615 ACGTGACTTGATACATCTGTATTTAGA 58.316 33.333 14.44 0.00 40.99 2.10
638 668 8.858003 ACGTGACTTGATACATCTGTATTTAG 57.142 34.615 4.44 7.42 40.99 1.85
639 669 9.647797 AAACGTGACTTGATACATCTGTATTTA 57.352 29.630 4.44 0.00 40.99 1.40
640 670 8.547967 AAACGTGACTTGATACATCTGTATTT 57.452 30.769 4.44 0.00 40.99 1.40
641 671 8.547967 AAAACGTGACTTGATACATCTGTATT 57.452 30.769 4.44 0.00 40.99 1.89
642 672 9.302345 CTAAAACGTGACTTGATACATCTGTAT 57.698 33.333 2.53 2.53 43.38 2.29
643 673 8.301720 ACTAAAACGTGACTTGATACATCTGTA 58.698 33.333 0.00 0.00 34.67 2.74
644 674 7.152645 ACTAAAACGTGACTTGATACATCTGT 58.847 34.615 0.00 0.00 0.00 3.41
645 675 7.582435 ACTAAAACGTGACTTGATACATCTG 57.418 36.000 0.00 0.00 0.00 2.90
646 676 8.521176 ACTACTAAAACGTGACTTGATACATCT 58.479 33.333 0.00 0.00 0.00 2.90
647 677 8.684973 ACTACTAAAACGTGACTTGATACATC 57.315 34.615 0.00 0.00 0.00 3.06
649 679 9.964303 TTTACTACTAAAACGTGACTTGATACA 57.036 29.630 0.00 0.00 0.00 2.29
653 683 9.964303 TGTATTTACTACTAAAACGTGACTTGA 57.036 29.630 0.00 0.00 0.00 3.02
656 686 9.578439 GGATGTATTTACTACTAAAACGTGACT 57.422 33.333 0.00 0.00 0.00 3.41
657 687 8.526681 CGGATGTATTTACTACTAAAACGTGAC 58.473 37.037 0.00 0.00 0.00 3.67
658 688 8.243426 ACGGATGTATTTACTACTAAAACGTGA 58.757 33.333 0.00 0.00 0.00 4.35
659 689 8.398491 ACGGATGTATTTACTACTAAAACGTG 57.602 34.615 0.00 0.00 0.00 4.49
676 706 9.276590 TCTTAGATTCGTTTAGATACGGATGTA 57.723 33.333 0.00 0.00 39.75 2.29
677 707 8.074972 GTCTTAGATTCGTTTAGATACGGATGT 58.925 37.037 0.00 0.00 39.75 3.06
678 708 8.074370 TGTCTTAGATTCGTTTAGATACGGATG 58.926 37.037 0.00 0.00 39.75 3.51
679 709 8.162878 TGTCTTAGATTCGTTTAGATACGGAT 57.837 34.615 0.00 0.00 42.25 4.18
680 710 7.558161 TGTCTTAGATTCGTTTAGATACGGA 57.442 36.000 0.00 0.00 41.67 4.69
681 711 8.127327 TCTTGTCTTAGATTCGTTTAGATACGG 58.873 37.037 0.00 0.00 41.67 4.02
682 712 9.499585 TTCTTGTCTTAGATTCGTTTAGATACG 57.500 33.333 0.00 0.00 42.68 3.06
689 719 8.082242 CCCAAAATTCTTGTCTTAGATTCGTTT 58.918 33.333 0.00 0.00 0.00 3.60
690 720 7.447238 TCCCAAAATTCTTGTCTTAGATTCGTT 59.553 33.333 0.00 0.00 0.00 3.85
691 721 6.940298 TCCCAAAATTCTTGTCTTAGATTCGT 59.060 34.615 0.00 0.00 0.00 3.85
692 722 7.244192 GTCCCAAAATTCTTGTCTTAGATTCG 58.756 38.462 0.00 0.00 0.00 3.34
693 723 7.244192 CGTCCCAAAATTCTTGTCTTAGATTC 58.756 38.462 0.00 0.00 0.00 2.52
694 724 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
695 725 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
696 726 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
697 727 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
698 728 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
699 729 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
700 730 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
701 731 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
702 732 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
703 733 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
704 734 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
705 735 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
706 736 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
707 737 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
708 738 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
709 739 1.203212 TCTACTCCCTCCGTCCCAAAA 60.203 52.381 0.00 0.00 0.00 2.44
710 740 0.410663 TCTACTCCCTCCGTCCCAAA 59.589 55.000 0.00 0.00 0.00 3.28
711 741 0.410663 TTCTACTCCCTCCGTCCCAA 59.589 55.000 0.00 0.00 0.00 4.12
712 742 0.410663 TTTCTACTCCCTCCGTCCCA 59.589 55.000 0.00 0.00 0.00 4.37
713 743 1.565067 TTTTCTACTCCCTCCGTCCC 58.435 55.000 0.00 0.00 0.00 4.46
714 744 3.908643 AATTTTCTACTCCCTCCGTCC 57.091 47.619 0.00 0.00 0.00 4.79
715 745 7.012138 GGAAATTAATTTTCTACTCCCTCCGTC 59.988 40.741 14.45 0.00 42.83 4.79
716 746 6.827251 GGAAATTAATTTTCTACTCCCTCCGT 59.173 38.462 14.45 0.00 42.83 4.69
717 747 6.018180 CGGAAATTAATTTTCTACTCCCTCCG 60.018 42.308 14.45 13.76 42.83 4.63
718 748 6.238676 GCGGAAATTAATTTTCTACTCCCTCC 60.239 42.308 14.45 6.53 42.83 4.30
719 749 6.542735 AGCGGAAATTAATTTTCTACTCCCTC 59.457 38.462 14.45 4.99 42.83 4.30
720 750 6.424032 AGCGGAAATTAATTTTCTACTCCCT 58.576 36.000 14.45 7.05 42.83 4.20
721 751 6.694877 AGCGGAAATTAATTTTCTACTCCC 57.305 37.500 14.45 8.34 42.83 4.30
984 1213 6.573664 AAGCTTTGCAGATATTTGTGTGTA 57.426 33.333 0.00 0.00 0.00 2.90
990 1221 7.809331 TGACAACTAAAGCTTTGCAGATATTTG 59.191 33.333 22.02 12.65 0.00 2.32
992 1223 7.452880 TGACAACTAAAGCTTTGCAGATATT 57.547 32.000 22.02 0.26 0.00 1.28
1476 1708 2.926200 CAGTCGAGCCTCAGTTACATTG 59.074 50.000 0.00 0.00 0.00 2.82
1518 1750 1.347707 TCGAAGAGGCAAACTGGATGT 59.652 47.619 0.00 0.00 0.00 3.06
1527 1760 3.418675 GACGTGATCGAAGAGGCAA 57.581 52.632 0.00 0.00 43.63 4.52
1590 1829 1.000385 CGGGATTGCAAAACAAGCAGA 60.000 47.619 1.71 0.00 46.70 4.26
1637 1876 6.994421 TCAATCTCAGCCCATACTACAATA 57.006 37.500 0.00 0.00 0.00 1.90
1886 2224 3.882888 ACAGATCAAAAGTTTCCTCGCAA 59.117 39.130 0.00 0.00 0.00 4.85
2028 2373 4.518249 TGTTCTTGTGTGTTGGTCATGTA 58.482 39.130 0.00 0.00 0.00 2.29
2044 2390 0.463654 TGGCGACAGTTGCTGTTCTT 60.464 50.000 12.78 0.00 45.44 2.52
2063 2409 9.137459 TCCTTTCGATCTATACTTCTCTTCATT 57.863 33.333 0.00 0.00 0.00 2.57
2183 2529 2.061578 ACGTGGTGGTGTGTCTCCA 61.062 57.895 0.00 0.00 0.00 3.86
2216 2562 1.358877 CGTTTCGGTGATGCATCTCA 58.641 50.000 26.32 7.11 0.00 3.27
2247 2594 9.411848 ACCCTAAAGATGGAATAATATTCTCCT 57.588 33.333 12.19 5.16 0.00 3.69
2702 3080 5.404366 CCACTGCATGCAAGCATTAAATATC 59.596 40.000 22.88 0.00 44.68 1.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.