Multiple sequence alignment - TraesCS3D01G476400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G476400 chr3D 100.000 4761 0 0 1 4761 577175952 577180712 0.000000e+00 8793.0
1 TraesCS3D01G476400 chr3D 95.355 818 34 4 3203 4016 577023873 577023056 0.000000e+00 1297.0
2 TraesCS3D01G476400 chr3D 83.177 1171 87 46 2368 3467 576854644 576853513 0.000000e+00 970.0
3 TraesCS3D01G476400 chr3D 88.592 824 60 14 2396 3212 577024690 577023894 0.000000e+00 970.0
4 TraesCS3D01G476400 chr3D 79.459 1480 174 66 2548 3974 575837753 575836351 0.000000e+00 929.0
5 TraesCS3D01G476400 chr3D 87.289 653 35 15 944 1551 577025974 577025325 0.000000e+00 702.0
6 TraesCS3D01G476400 chr3D 79.449 871 89 36 763 1582 576856423 576855592 7.010000e-148 534.0
7 TraesCS3D01G476400 chr3D 85.028 541 51 15 3254 3783 577153749 577153228 1.520000e-144 523.0
8 TraesCS3D01G476400 chr3D 84.677 496 56 13 3504 3981 576853509 576853016 1.200000e-130 477.0
9 TraesCS3D01G476400 chr3D 85.325 477 40 12 3332 3783 577144386 577143915 2.590000e-127 466.0
10 TraesCS3D01G476400 chr3D 83.402 482 59 19 2298 2770 575839358 575838889 1.220000e-115 427.0
11 TraesCS3D01G476400 chr3D 80.123 488 64 26 2267 2733 577155761 577155286 2.750000e-87 333.0
12 TraesCS3D01G476400 chr3D 92.377 223 16 1 1029 1251 575840360 575840139 2.770000e-82 316.0
13 TraesCS3D01G476400 chr3D 88.690 168 17 2 1704 1869 576855544 576855377 2.250000e-48 204.0
14 TraesCS3D01G476400 chr3D 83.772 228 19 10 1868 2078 577156072 577155846 2.910000e-47 200.0
15 TraesCS3D01G476400 chr3D 88.957 163 14 1 1854 2012 575765956 575765794 1.050000e-46 198.0
16 TraesCS3D01G476400 chr3D 89.677 155 11 4 1869 2018 575839674 575839520 4.860000e-45 193.0
17 TraesCS3D01G476400 chr3D 90.714 140 11 2 1880 2017 577025074 577024935 8.140000e-43 185.0
18 TraesCS3D01G476400 chr3D 83.158 190 16 7 1683 1868 577025223 577025046 4.930000e-35 159.0
19 TraesCS3D01G476400 chr3D 82.514 183 10 7 2162 2343 577024850 577024689 1.790000e-29 141.0
20 TraesCS3D01G476400 chr3D 89.691 97 8 1 2912 3006 575838038 575837942 6.470000e-24 122.0
21 TraesCS3D01G476400 chr3D 100.000 31 0 0 909 939 577025995 577025965 1.850000e-04 58.4
22 TraesCS3D01G476400 chr3A 91.772 3488 138 50 760 4166 712452526 712455945 0.000000e+00 4713.0
23 TraesCS3D01G476400 chr3A 85.128 1291 99 36 2299 3536 712380413 712381663 0.000000e+00 1234.0
24 TraesCS3D01G476400 chr3A 93.818 825 41 6 3200 4016 712324228 712325050 0.000000e+00 1232.0
25 TraesCS3D01G476400 chr3A 80.175 1604 186 84 2368 3924 711382277 711380759 0.000000e+00 1079.0
26 TraesCS3D01G476400 chr3A 88.271 827 59 18 2396 3212 712323370 712324168 0.000000e+00 955.0
27 TraesCS3D01G476400 chr3A 88.683 539 40 11 4189 4708 712463050 712463586 5.200000e-179 638.0
28 TraesCS3D01G476400 chr3A 84.683 679 58 22 911 1551 712322056 712322726 1.870000e-178 636.0
29 TraesCS3D01G476400 chr3A 82.880 625 78 24 2262 2869 711384665 711384053 7.010000e-148 534.0
30 TraesCS3D01G476400 chr3A 80.247 810 75 41 788 1551 712378903 712379673 9.070000e-147 531.0
31 TraesCS3D01G476400 chr3A 84.598 435 51 5 251 676 712449788 712450215 7.370000e-113 418.0
32 TraesCS3D01G476400 chr3A 85.215 372 38 5 1880 2234 712379928 712380299 2.710000e-97 366.0
33 TraesCS3D01G476400 chr3A 92.275 233 17 1 1030 1261 711385650 711385418 3.550000e-86 329.0
34 TraesCS3D01G476400 chr3A 78.903 474 72 19 4302 4761 712325590 712326049 3.600000e-76 296.0
35 TraesCS3D01G476400 chr3A 85.567 194 20 6 1680 1868 712322824 712323014 3.760000e-46 196.0
36 TraesCS3D01G476400 chr3A 86.486 185 17 6 1678 1859 712379768 712379947 3.760000e-46 196.0
37 TraesCS3D01G476400 chr3A 89.922 129 13 0 1882 2010 712322988 712323116 2.950000e-37 167.0
38 TraesCS3D01G476400 chr3A 93.846 65 4 0 4697 4761 712467138 712467202 1.090000e-16 99.0
39 TraesCS3D01G476400 chr3A 96.970 33 1 0 4168 4200 712456203 712456235 6.660000e-04 56.5
40 TraesCS3D01G476400 chr3B 92.213 3249 145 45 1574 4761 768724186 768727387 0.000000e+00 4499.0
41 TraesCS3D01G476400 chr3B 85.986 842 43 35 763 1551 768723309 768724128 0.000000e+00 832.0
42 TraesCS3D01G476400 chr3B 86.676 743 69 16 3247 3980 768672208 768672929 0.000000e+00 797.0
43 TraesCS3D01G476400 chr3B 79.890 1089 95 58 822 1853 768669980 768671001 0.000000e+00 684.0
44 TraesCS3D01G476400 chr3B 83.973 730 75 22 3266 3978 768264590 768265294 0.000000e+00 662.0
45 TraesCS3D01G476400 chr3B 84.365 646 64 18 854 1473 768572453 768573087 2.450000e-167 599.0
46 TraesCS3D01G476400 chr3B 83.752 597 68 26 2259 2837 768262381 768262966 5.420000e-149 538.0
47 TraesCS3D01G476400 chr3B 90.909 385 33 2 2 386 768681348 768681730 2.540000e-142 516.0
48 TraesCS3D01G476400 chr3B 88.293 410 34 10 2464 2867 768671346 768671747 3.330000e-131 479.0
49 TraesCS3D01G476400 chr3B 83.711 485 61 15 2393 2868 768511690 768512165 4.370000e-120 442.0
50 TraesCS3D01G476400 chr3B 91.275 298 23 3 380 676 768699186 768699481 2.060000e-108 403.0
51 TraesCS3D01G476400 chr3B 89.883 257 23 3 1007 1263 768261382 768261635 1.280000e-85 327.0
52 TraesCS3D01G476400 chr3B 83.713 307 29 11 2910 3209 768671835 768672127 2.180000e-68 270.0
53 TraesCS3D01G476400 chr3B 84.649 228 21 8 1864 2078 766835222 766834996 1.040000e-51 215.0
54 TraesCS3D01G476400 chr3B 84.889 225 17 8 1869 2078 768262085 768262307 1.340000e-50 211.0
55 TraesCS3D01G476400 chr3B 76.321 473 63 30 2737 3195 768264088 768264525 1.740000e-49 207.0
56 TraesCS3D01G476400 chr3B 83.117 231 21 10 1864 2077 768511275 768511504 1.350000e-45 195.0
57 TraesCS3D01G476400 chr3B 87.629 97 10 1 2912 3006 768263651 768263747 1.400000e-20 111.0
58 TraesCS3D01G476400 chr2B 94.965 715 36 0 3267 3981 657053176 657052462 0.000000e+00 1122.0
59 TraesCS3D01G476400 chr2B 85.375 547 44 19 1033 1551 657055010 657054472 7.010000e-148 534.0
60 TraesCS3D01G476400 chr2B 82.305 616 59 29 2162 2774 657053926 657053358 5.540000e-134 488.0
61 TraesCS3D01G476400 chr2B 84.281 299 29 11 1574 1868 657054401 657054117 4.690000e-70 276.0
62 TraesCS3D01G476400 chr2B 85.882 170 6 4 3030 3194 657053337 657053181 1.060000e-36 165.0
63 TraesCS3D01G476400 chr2B 80.729 192 30 6 807 997 657055277 657055092 4.970000e-30 143.0
64 TraesCS3D01G476400 chr2B 100.000 30 0 0 1006 1035 657055049 657055020 6.660000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G476400 chr3D 577175952 577180712 4760 False 8793.000000 8793 100.000000 1 4761 1 chr3D.!!$F1 4760
1 TraesCS3D01G476400 chr3D 576853016 576856423 3407 True 546.250000 970 83.998250 763 3981 4 chr3D.!!$R4 3218
2 TraesCS3D01G476400 chr3D 577023056 577025995 2939 True 501.771429 1297 89.660286 909 4016 7 chr3D.!!$R5 3107
3 TraesCS3D01G476400 chr3D 575836351 575840360 4009 True 397.400000 929 86.921200 1029 3974 5 chr3D.!!$R3 2945
4 TraesCS3D01G476400 chr3D 577153228 577156072 2844 True 352.000000 523 82.974333 1868 3783 3 chr3D.!!$R6 1915
5 TraesCS3D01G476400 chr3A 712449788 712456235 6447 False 1729.166667 4713 91.113333 251 4200 3 chr3A.!!$F3 3949
6 TraesCS3D01G476400 chr3A 711380759 711385650 4891 True 647.333333 1079 85.110000 1030 3924 3 chr3A.!!$R1 2894
7 TraesCS3D01G476400 chr3A 712378903 712381663 2760 False 581.750000 1234 84.269000 788 3536 4 chr3A.!!$F2 2748
8 TraesCS3D01G476400 chr3A 712322056 712326049 3993 False 580.333333 1232 86.860667 911 4761 6 chr3A.!!$F1 3850
9 TraesCS3D01G476400 chr3A 712463050 712467202 4152 False 368.500000 638 91.264500 4189 4761 2 chr3A.!!$F4 572
10 TraesCS3D01G476400 chr3B 768723309 768727387 4078 False 2665.500000 4499 89.099500 763 4761 2 chr3B.!!$F7 3998
11 TraesCS3D01G476400 chr3B 768572453 768573087 634 False 599.000000 599 84.365000 854 1473 1 chr3B.!!$F1 619
12 TraesCS3D01G476400 chr3B 768669980 768672929 2949 False 557.500000 797 84.643000 822 3980 4 chr3B.!!$F6 3158
13 TraesCS3D01G476400 chr3B 768261382 768265294 3912 False 342.666667 662 84.407833 1007 3978 6 chr3B.!!$F4 2971
14 TraesCS3D01G476400 chr3B 768511275 768512165 890 False 318.500000 442 83.414000 1864 2868 2 chr3B.!!$F5 1004
15 TraesCS3D01G476400 chr2B 657052462 657055277 2815 True 397.785714 1122 87.648143 807 3981 7 chr2B.!!$R1 3174

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 0.033208 CACATGCCCCACCCATTAGT 60.033 55.0 0.0 0.00 0.00 2.24 F
160 161 0.107831 TGTGTGGGTAGTTGAGTGGC 59.892 55.0 0.0 0.00 0.00 5.01 F
198 199 0.112606 TGTCCCGGCTATCCTCCTAG 59.887 60.0 0.0 0.00 0.00 3.02 F
370 371 0.179156 CAGGCTAGCCAAAATGCACG 60.179 55.0 34.7 7.98 38.92 5.34 F
721 1831 0.250467 ACCTAGCTTGTGTGGCTGTG 60.250 55.0 0.0 0.00 40.52 3.66 F
2173 5199 0.323725 CCATGTGCCTTTAGTGCCCT 60.324 55.0 0.0 0.00 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1424 3844 0.555769 GATCTACCAAATGGGGCCCA 59.444 55.000 30.97 30.97 42.91 5.36 R
1427 3847 3.117888 TCTTCAGATCTACCAAATGGGGC 60.118 47.826 4.17 0.00 42.91 5.80 R
1626 4143 3.463048 AGGCCCTCAAAATCAGACATT 57.537 42.857 0.00 0.00 0.00 2.71 R
2359 5644 5.424757 GTGTCTACCATTTGCACAGGTATA 58.575 41.667 10.55 2.94 37.28 1.47 R
2498 7842 2.224137 TGCTGCTAGCTGGCAATACTAG 60.224 50.000 25.71 13.75 42.97 2.57 R
4077 11823 0.539986 ACAATATTGCCCTCGTCCGT 59.460 50.000 15.48 0.00 0.00 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.416202 GCTAATGGGTTTTTGCACATGC 59.584 45.455 0.00 0.00 42.50 4.06
22 23 1.894881 AATGGGTTTTTGCACATGCC 58.105 45.000 0.49 0.00 41.18 4.40
23 24 0.036590 ATGGGTTTTTGCACATGCCC 59.963 50.000 0.49 8.26 41.18 5.36
24 25 1.302431 GGGTTTTTGCACATGCCCC 60.302 57.895 0.49 0.29 41.18 5.80
25 26 1.449353 GGTTTTTGCACATGCCCCA 59.551 52.632 0.49 0.00 41.18 4.96
26 27 0.884259 GGTTTTTGCACATGCCCCAC 60.884 55.000 0.49 0.00 41.18 4.61
27 28 0.884259 GTTTTTGCACATGCCCCACC 60.884 55.000 0.49 0.00 41.18 4.61
28 29 2.049627 TTTTTGCACATGCCCCACCC 62.050 55.000 0.49 0.00 41.18 4.61
29 30 3.763472 TTTGCACATGCCCCACCCA 62.763 57.895 0.49 0.00 41.18 4.51
30 31 3.542864 TTGCACATGCCCCACCCAT 62.543 57.895 0.49 0.00 41.18 4.00
31 32 2.684655 GCACATGCCCCACCCATT 60.685 61.111 0.00 0.00 34.31 3.16
32 33 1.381056 GCACATGCCCCACCCATTA 60.381 57.895 0.00 0.00 34.31 1.90
33 34 1.394266 GCACATGCCCCACCCATTAG 61.394 60.000 0.00 0.00 34.31 1.73
34 35 0.033208 CACATGCCCCACCCATTAGT 60.033 55.000 0.00 0.00 0.00 2.24
35 36 0.258774 ACATGCCCCACCCATTAGTC 59.741 55.000 0.00 0.00 0.00 2.59
36 37 0.468029 CATGCCCCACCCATTAGTCC 60.468 60.000 0.00 0.00 0.00 3.85
37 38 1.994885 ATGCCCCACCCATTAGTCCG 61.995 60.000 0.00 0.00 0.00 4.79
38 39 2.372074 GCCCCACCCATTAGTCCGA 61.372 63.158 0.00 0.00 0.00 4.55
39 40 1.525442 CCCCACCCATTAGTCCGAC 59.475 63.158 0.00 0.00 0.00 4.79
40 41 1.143183 CCCACCCATTAGTCCGACG 59.857 63.158 0.00 0.00 0.00 5.12
41 42 1.610554 CCCACCCATTAGTCCGACGT 61.611 60.000 0.00 0.00 0.00 4.34
42 43 0.459585 CCACCCATTAGTCCGACGTG 60.460 60.000 0.00 0.00 0.00 4.49
43 44 0.459585 CACCCATTAGTCCGACGTGG 60.460 60.000 0.00 11.51 40.09 4.94
44 45 1.520787 CCCATTAGTCCGACGTGGC 60.521 63.158 12.52 0.00 37.80 5.01
45 46 1.876714 CCATTAGTCCGACGTGGCG 60.877 63.158 0.00 0.00 37.80 5.69
55 56 4.695231 ACGTGGCGGACTCGTTCG 62.695 66.667 4.93 0.00 45.96 3.95
79 80 2.919971 GCCTGAGCGTTCCCATATC 58.080 57.895 0.00 0.00 0.00 1.63
80 81 0.603975 GCCTGAGCGTTCCCATATCC 60.604 60.000 0.00 0.00 0.00 2.59
81 82 0.319900 CCTGAGCGTTCCCATATCCG 60.320 60.000 0.00 0.00 0.00 4.18
82 83 0.946221 CTGAGCGTTCCCATATCCGC 60.946 60.000 0.00 0.00 46.07 5.54
83 84 1.668151 GAGCGTTCCCATATCCGCC 60.668 63.158 0.00 0.00 46.85 6.13
84 85 2.668550 GCGTTCCCATATCCGCCC 60.669 66.667 0.00 0.00 40.25 6.13
85 86 2.032071 CGTTCCCATATCCGCCCC 59.968 66.667 0.00 0.00 0.00 5.80
86 87 2.434774 GTTCCCATATCCGCCCCC 59.565 66.667 0.00 0.00 0.00 5.40
87 88 2.039298 TTCCCATATCCGCCCCCA 60.039 61.111 0.00 0.00 0.00 4.96
88 89 2.457323 TTCCCATATCCGCCCCCAC 61.457 63.158 0.00 0.00 0.00 4.61
89 90 3.174987 CCCATATCCGCCCCCACA 61.175 66.667 0.00 0.00 0.00 4.17
90 91 2.538141 CCCATATCCGCCCCCACAT 61.538 63.158 0.00 0.00 0.00 3.21
91 92 1.204786 CCCATATCCGCCCCCACATA 61.205 60.000 0.00 0.00 0.00 2.29
92 93 0.918983 CCATATCCGCCCCCACATAT 59.081 55.000 0.00 0.00 0.00 1.78
93 94 1.408683 CCATATCCGCCCCCACATATG 60.409 57.143 0.00 0.00 0.00 1.78
94 95 0.918983 ATATCCGCCCCCACATATGG 59.081 55.000 7.80 0.00 46.81 2.74
107 108 5.045012 CCACATATGGGATGGATATGAGG 57.955 47.826 6.51 0.00 43.04 3.86
108 109 4.141321 CCACATATGGGATGGATATGAGGG 60.141 50.000 6.51 0.00 43.04 4.30
109 110 4.723285 CACATATGGGATGGATATGAGGGA 59.277 45.833 7.80 0.00 37.27 4.20
110 111 5.371769 CACATATGGGATGGATATGAGGGAT 59.628 44.000 7.80 0.00 37.27 3.85
111 112 5.371769 ACATATGGGATGGATATGAGGGATG 59.628 44.000 7.80 0.00 37.27 3.51
112 113 3.296399 TGGGATGGATATGAGGGATGT 57.704 47.619 0.00 0.00 0.00 3.06
113 114 3.184628 TGGGATGGATATGAGGGATGTC 58.815 50.000 0.00 0.00 0.00 3.06
114 115 3.184628 GGGATGGATATGAGGGATGTCA 58.815 50.000 0.00 0.00 0.00 3.58
115 116 3.199508 GGGATGGATATGAGGGATGTCAG 59.800 52.174 0.00 0.00 0.00 3.51
116 117 4.099633 GGATGGATATGAGGGATGTCAGA 58.900 47.826 0.00 0.00 0.00 3.27
117 118 4.081198 GGATGGATATGAGGGATGTCAGAC 60.081 50.000 0.00 0.00 0.00 3.51
118 119 3.927476 TGGATATGAGGGATGTCAGACA 58.073 45.455 5.50 5.50 0.00 3.41
119 120 4.297768 TGGATATGAGGGATGTCAGACAA 58.702 43.478 7.50 0.00 0.00 3.18
120 121 4.101585 TGGATATGAGGGATGTCAGACAAC 59.898 45.833 7.50 4.59 0.00 3.32
121 122 4.503991 GGATATGAGGGATGTCAGACAACC 60.504 50.000 19.46 19.46 39.98 3.77
126 127 2.044123 GGATGTCAGACAACCCATCC 57.956 55.000 17.36 10.92 44.62 3.51
127 128 1.656652 GATGTCAGACAACCCATCCG 58.343 55.000 7.50 0.00 0.00 4.18
128 129 0.984230 ATGTCAGACAACCCATCCGT 59.016 50.000 7.50 0.00 0.00 4.69
129 130 0.762418 TGTCAGACAACCCATCCGTT 59.238 50.000 0.00 0.00 0.00 4.44
130 131 1.142060 TGTCAGACAACCCATCCGTTT 59.858 47.619 0.00 0.00 0.00 3.60
131 132 1.535462 GTCAGACAACCCATCCGTTTG 59.465 52.381 0.00 0.00 0.00 2.93
132 133 0.881118 CAGACAACCCATCCGTTTGG 59.119 55.000 0.00 0.00 36.46 3.28
138 139 2.755469 CCATCCGTTTGGGCTGGG 60.755 66.667 0.00 0.00 35.80 4.45
139 140 2.035626 CATCCGTTTGGGCTGGGT 59.964 61.111 0.00 0.00 35.24 4.51
140 141 2.035626 ATCCGTTTGGGCTGGGTG 59.964 61.111 0.00 0.00 35.24 4.61
141 142 2.840753 ATCCGTTTGGGCTGGGTGT 61.841 57.895 0.00 0.00 35.24 4.16
142 143 3.294493 CCGTTTGGGCTGGGTGTG 61.294 66.667 0.00 0.00 0.00 3.82
143 144 2.518349 CGTTTGGGCTGGGTGTGT 60.518 61.111 0.00 0.00 0.00 3.72
144 145 2.844451 CGTTTGGGCTGGGTGTGTG 61.844 63.158 0.00 0.00 0.00 3.82
145 146 1.756561 GTTTGGGCTGGGTGTGTGT 60.757 57.895 0.00 0.00 0.00 3.72
146 147 1.756172 TTTGGGCTGGGTGTGTGTG 60.756 57.895 0.00 0.00 0.00 3.82
147 148 3.730028 TTGGGCTGGGTGTGTGTGG 62.730 63.158 0.00 0.00 0.00 4.17
148 149 4.974721 GGGCTGGGTGTGTGTGGG 62.975 72.222 0.00 0.00 0.00 4.61
149 150 4.204028 GGCTGGGTGTGTGTGGGT 62.204 66.667 0.00 0.00 0.00 4.51
150 151 2.824880 GGCTGGGTGTGTGTGGGTA 61.825 63.158 0.00 0.00 0.00 3.69
151 152 1.302511 GCTGGGTGTGTGTGGGTAG 60.303 63.158 0.00 0.00 0.00 3.18
152 153 2.052047 GCTGGGTGTGTGTGGGTAGT 62.052 60.000 0.00 0.00 0.00 2.73
153 154 0.472471 CTGGGTGTGTGTGGGTAGTT 59.528 55.000 0.00 0.00 0.00 2.24
154 155 0.181587 TGGGTGTGTGTGGGTAGTTG 59.818 55.000 0.00 0.00 0.00 3.16
155 156 0.470766 GGGTGTGTGTGGGTAGTTGA 59.529 55.000 0.00 0.00 0.00 3.18
156 157 1.542547 GGGTGTGTGTGGGTAGTTGAG 60.543 57.143 0.00 0.00 0.00 3.02
157 158 1.140252 GGTGTGTGTGGGTAGTTGAGT 59.860 52.381 0.00 0.00 0.00 3.41
158 159 2.210116 GTGTGTGTGGGTAGTTGAGTG 58.790 52.381 0.00 0.00 0.00 3.51
159 160 1.140052 TGTGTGTGGGTAGTTGAGTGG 59.860 52.381 0.00 0.00 0.00 4.00
160 161 0.107831 TGTGTGGGTAGTTGAGTGGC 59.892 55.000 0.00 0.00 0.00 5.01
161 162 0.107831 GTGTGGGTAGTTGAGTGGCA 59.892 55.000 0.00 0.00 0.00 4.92
162 163 0.840617 TGTGGGTAGTTGAGTGGCAA 59.159 50.000 0.00 0.00 0.00 4.52
163 164 1.423541 TGTGGGTAGTTGAGTGGCAAT 59.576 47.619 0.00 0.00 39.03 3.56
164 165 2.158534 TGTGGGTAGTTGAGTGGCAATT 60.159 45.455 0.00 0.00 39.03 2.32
165 166 2.890945 GTGGGTAGTTGAGTGGCAATTT 59.109 45.455 0.00 0.00 39.03 1.82
166 167 3.320826 GTGGGTAGTTGAGTGGCAATTTT 59.679 43.478 0.00 0.00 39.03 1.82
167 168 3.320541 TGGGTAGTTGAGTGGCAATTTTG 59.679 43.478 0.00 0.00 39.03 2.44
168 169 3.320826 GGGTAGTTGAGTGGCAATTTTGT 59.679 43.478 0.00 0.00 39.03 2.83
169 170 4.298332 GGTAGTTGAGTGGCAATTTTGTG 58.702 43.478 0.00 0.00 39.03 3.33
170 171 3.457610 AGTTGAGTGGCAATTTTGTGG 57.542 42.857 0.00 0.00 39.03 4.17
171 172 1.866601 GTTGAGTGGCAATTTTGTGGC 59.133 47.619 0.00 0.00 44.09 5.01
175 176 2.047370 GGCAATTTTGTGGCCGGG 60.047 61.111 2.18 0.00 38.04 5.73
176 177 2.741985 GCAATTTTGTGGCCGGGC 60.742 61.111 23.42 23.42 0.00 6.13
177 178 3.059099 CAATTTTGTGGCCGGGCT 58.941 55.556 29.87 4.11 0.00 5.19
178 179 1.374505 CAATTTTGTGGCCGGGCTG 60.375 57.895 29.87 13.25 0.00 4.85
179 180 1.836604 AATTTTGTGGCCGGGCTGT 60.837 52.632 29.87 5.59 0.00 4.40
180 181 2.098426 AATTTTGTGGCCGGGCTGTG 62.098 55.000 29.87 0.00 0.00 3.66
181 182 4.514585 TTTGTGGCCGGGCTGTGT 62.515 61.111 29.87 0.00 0.00 3.72
182 183 4.947147 TTGTGGCCGGGCTGTGTC 62.947 66.667 29.87 13.96 0.00 3.67
190 191 3.480133 GGGCTGTGTCCCGGCTAT 61.480 66.667 0.00 0.00 45.36 2.97
191 192 2.109181 GGCTGTGTCCCGGCTATC 59.891 66.667 0.00 0.00 45.36 2.08
192 193 2.109181 GCTGTGTCCCGGCTATCC 59.891 66.667 0.00 0.00 42.55 2.59
193 194 2.435693 GCTGTGTCCCGGCTATCCT 61.436 63.158 0.00 0.00 42.55 3.24
194 195 1.742768 CTGTGTCCCGGCTATCCTC 59.257 63.158 0.00 0.00 0.00 3.71
195 196 1.749334 CTGTGTCCCGGCTATCCTCC 61.749 65.000 0.00 0.00 0.00 4.30
196 197 1.457831 GTGTCCCGGCTATCCTCCT 60.458 63.158 0.00 0.00 0.00 3.69
197 198 0.178970 GTGTCCCGGCTATCCTCCTA 60.179 60.000 0.00 0.00 0.00 2.94
198 199 0.112606 TGTCCCGGCTATCCTCCTAG 59.887 60.000 0.00 0.00 0.00 3.02
199 200 0.404812 GTCCCGGCTATCCTCCTAGA 59.595 60.000 0.00 0.00 0.00 2.43
200 201 0.404812 TCCCGGCTATCCTCCTAGAC 59.595 60.000 0.00 0.00 0.00 2.59
202 203 0.250814 CCGGCTATCCTCCTAGACGT 60.251 60.000 5.71 0.00 46.59 4.34
203 204 1.606903 CGGCTATCCTCCTAGACGTT 58.393 55.000 0.00 0.00 43.71 3.99
204 205 1.955080 CGGCTATCCTCCTAGACGTTT 59.045 52.381 0.00 0.00 43.71 3.60
205 206 3.144506 CGGCTATCCTCCTAGACGTTTA 58.855 50.000 0.00 0.00 43.71 2.01
206 207 3.188873 CGGCTATCCTCCTAGACGTTTAG 59.811 52.174 6.15 6.15 43.71 1.85
207 208 3.506844 GGCTATCCTCCTAGACGTTTAGG 59.493 52.174 23.03 23.03 41.36 2.69
208 209 3.506844 GCTATCCTCCTAGACGTTTAGGG 59.493 52.174 26.93 18.60 40.56 3.53
209 210 2.449137 TCCTCCTAGACGTTTAGGGG 57.551 55.000 26.93 24.74 40.43 4.79
211 212 2.449137 CTCCTAGACGTTTAGGGGGA 57.551 55.000 26.93 11.33 40.56 4.81
212 213 2.960163 CTCCTAGACGTTTAGGGGGAT 58.040 52.381 26.93 0.00 40.56 3.85
213 214 2.892215 CTCCTAGACGTTTAGGGGGATC 59.108 54.545 26.93 0.00 40.56 3.36
214 215 2.517127 TCCTAGACGTTTAGGGGGATCT 59.483 50.000 26.93 2.08 40.56 2.75
215 216 3.052338 TCCTAGACGTTTAGGGGGATCTT 60.052 47.826 26.93 0.00 40.56 2.40
216 217 3.069729 CCTAGACGTTTAGGGGGATCTTG 59.930 52.174 21.66 0.00 37.20 3.02
217 218 2.829023 AGACGTTTAGGGGGATCTTGA 58.171 47.619 0.00 0.00 0.00 3.02
218 219 2.766828 AGACGTTTAGGGGGATCTTGAG 59.233 50.000 0.00 0.00 0.00 3.02
219 220 1.838077 ACGTTTAGGGGGATCTTGAGG 59.162 52.381 0.00 0.00 0.00 3.86
220 221 2.116238 CGTTTAGGGGGATCTTGAGGA 58.884 52.381 0.00 0.00 0.00 3.71
221 222 2.103263 CGTTTAGGGGGATCTTGAGGAG 59.897 54.545 0.00 0.00 0.00 3.69
222 223 3.116174 GTTTAGGGGGATCTTGAGGAGT 58.884 50.000 0.00 0.00 0.00 3.85
223 224 3.508952 TTAGGGGGATCTTGAGGAGTT 57.491 47.619 0.00 0.00 0.00 3.01
224 225 2.367947 AGGGGGATCTTGAGGAGTTT 57.632 50.000 0.00 0.00 0.00 2.66
225 226 1.918957 AGGGGGATCTTGAGGAGTTTG 59.081 52.381 0.00 0.00 0.00 2.93
226 227 1.064389 GGGGGATCTTGAGGAGTTTGG 60.064 57.143 0.00 0.00 0.00 3.28
227 228 1.636003 GGGGATCTTGAGGAGTTTGGT 59.364 52.381 0.00 0.00 0.00 3.67
228 229 2.041755 GGGGATCTTGAGGAGTTTGGTT 59.958 50.000 0.00 0.00 0.00 3.67
229 230 3.084786 GGGATCTTGAGGAGTTTGGTTG 58.915 50.000 0.00 0.00 0.00 3.77
230 231 3.498661 GGGATCTTGAGGAGTTTGGTTGT 60.499 47.826 0.00 0.00 0.00 3.32
231 232 4.263331 GGGATCTTGAGGAGTTTGGTTGTA 60.263 45.833 0.00 0.00 0.00 2.41
232 233 4.938226 GGATCTTGAGGAGTTTGGTTGTAG 59.062 45.833 0.00 0.00 0.00 2.74
233 234 5.280011 GGATCTTGAGGAGTTTGGTTGTAGA 60.280 44.000 0.00 0.00 0.00 2.59
234 235 5.623956 TCTTGAGGAGTTTGGTTGTAGAA 57.376 39.130 0.00 0.00 0.00 2.10
235 236 5.611374 TCTTGAGGAGTTTGGTTGTAGAAG 58.389 41.667 0.00 0.00 0.00 2.85
236 237 3.740115 TGAGGAGTTTGGTTGTAGAAGC 58.260 45.455 0.00 0.00 0.00 3.86
237 238 3.391296 TGAGGAGTTTGGTTGTAGAAGCT 59.609 43.478 3.31 0.00 0.00 3.74
238 239 3.997681 GAGGAGTTTGGTTGTAGAAGCTC 59.002 47.826 3.31 0.00 0.00 4.09
239 240 3.648545 AGGAGTTTGGTTGTAGAAGCTCT 59.351 43.478 3.31 0.00 31.93 4.09
240 241 4.103311 AGGAGTTTGGTTGTAGAAGCTCTT 59.897 41.667 3.31 0.00 31.93 2.85
241 242 5.307196 AGGAGTTTGGTTGTAGAAGCTCTTA 59.693 40.000 3.31 0.00 31.93 2.10
242 243 5.408909 GGAGTTTGGTTGTAGAAGCTCTTAC 59.591 44.000 3.31 0.00 31.93 2.34
243 244 5.925509 AGTTTGGTTGTAGAAGCTCTTACA 58.074 37.500 3.31 6.26 0.00 2.41
244 245 6.534634 AGTTTGGTTGTAGAAGCTCTTACAT 58.465 36.000 10.12 0.00 0.00 2.29
245 246 6.428159 AGTTTGGTTGTAGAAGCTCTTACATG 59.572 38.462 10.12 0.00 0.00 3.21
246 247 4.832248 TGGTTGTAGAAGCTCTTACATGG 58.168 43.478 10.12 0.00 0.00 3.66
247 248 4.530553 TGGTTGTAGAAGCTCTTACATGGA 59.469 41.667 10.12 0.00 0.00 3.41
248 249 5.012664 TGGTTGTAGAAGCTCTTACATGGAA 59.987 40.000 10.12 0.00 0.00 3.53
249 250 5.582665 GGTTGTAGAAGCTCTTACATGGAAG 59.417 44.000 11.83 11.83 0.00 3.46
253 254 5.753721 AGAAGCTCTTACATGGAAGTTCT 57.246 39.130 17.38 15.26 0.00 3.01
298 299 7.597386 AGAAAAACTGAAGCATAAGCCTAAAG 58.403 34.615 0.00 0.00 43.56 1.85
363 364 1.351017 ACTAGTTGCAGGCTAGCCAAA 59.649 47.619 34.70 22.15 39.48 3.28
364 365 2.224769 ACTAGTTGCAGGCTAGCCAAAA 60.225 45.455 34.70 21.80 39.48 2.44
365 366 1.928868 AGTTGCAGGCTAGCCAAAAT 58.071 45.000 34.70 21.23 38.92 1.82
366 367 1.547372 AGTTGCAGGCTAGCCAAAATG 59.453 47.619 34.70 24.19 38.92 2.32
367 368 0.247185 TTGCAGGCTAGCCAAAATGC 59.753 50.000 34.70 31.76 38.92 3.56
368 369 0.899253 TGCAGGCTAGCCAAAATGCA 60.899 50.000 33.06 33.06 39.94 3.96
369 370 0.459063 GCAGGCTAGCCAAAATGCAC 60.459 55.000 34.70 9.27 38.92 4.57
370 371 0.179156 CAGGCTAGCCAAAATGCACG 60.179 55.000 34.70 7.98 38.92 5.34
371 372 1.517039 GGCTAGCCAAAATGCACGC 60.517 57.895 29.33 0.00 35.81 5.34
385 386 0.602905 GCACGCCACTGGTACTTTCT 60.603 55.000 0.00 0.00 0.00 2.52
397 398 8.138712 CCACTGGTACTTTCTATAAGTCATCTC 58.861 40.741 0.00 0.00 0.00 2.75
414 415 7.405292 AGTCATCTCAAAATTACCATTGGAGA 58.595 34.615 10.37 0.00 37.73 3.71
429 430 1.566018 GGAGACCACAAAAGTCGCGG 61.566 60.000 6.13 0.00 39.31 6.46
445 446 2.109181 GGCCGCCACTGATACCTC 59.891 66.667 3.91 0.00 0.00 3.85
446 447 2.731571 GGCCGCCACTGATACCTCA 61.732 63.158 3.91 0.00 0.00 3.86
447 448 1.447643 GCCGCCACTGATACCTCAT 59.552 57.895 0.00 0.00 0.00 2.90
454 455 5.452776 CCGCCACTGATACCTCATTTACTAA 60.453 44.000 0.00 0.00 0.00 2.24
457 458 6.428159 GCCACTGATACCTCATTTACTAATGG 59.572 42.308 0.00 0.00 41.23 3.16
458 459 7.509546 CCACTGATACCTCATTTACTAATGGT 58.490 38.462 0.00 0.00 41.23 3.55
467 468 2.889170 TTACTAATGGTGGGCTGCAA 57.111 45.000 0.50 0.00 0.00 4.08
470 471 1.285962 ACTAATGGTGGGCTGCAATCT 59.714 47.619 0.50 0.00 0.00 2.40
476 477 1.672030 TGGGCTGCAATCTGTGTCG 60.672 57.895 0.50 0.00 0.00 4.35
497 498 3.809832 CGGCCACTAGTATTTTCATCCAG 59.190 47.826 2.24 0.00 0.00 3.86
524 525 3.033184 CCATGGGCCAAAATATGAGTGT 58.967 45.455 11.89 0.00 0.00 3.55
546 547 3.863681 GCACATTTGCGGACTCAAA 57.136 47.368 0.00 0.00 39.50 2.69
569 570 0.895100 ACGTCCGCCACTGGTACTTA 60.895 55.000 0.00 0.00 0.00 2.24
583 584 5.071384 ACTGGTACTTAAGTTACAACTGGCT 59.929 40.000 14.49 0.00 39.66 4.75
587 597 3.393278 ACTTAAGTTACAACTGGCTGGGA 59.607 43.478 1.12 0.00 39.66 4.37
590 600 3.073274 AGTTACAACTGGCTGGGAATC 57.927 47.619 0.00 0.00 37.98 2.52
622 632 5.009610 GCAAGTGATTACTTCCTTTGGTGAA 59.990 40.000 0.00 0.00 45.12 3.18
623 633 6.294731 GCAAGTGATTACTTCCTTTGGTGAAT 60.295 38.462 0.00 0.00 45.12 2.57
624 634 7.661040 CAAGTGATTACTTCCTTTGGTGAATT 58.339 34.615 0.00 0.00 45.12 2.17
625 635 7.219484 AGTGATTACTTCCTTTGGTGAATTG 57.781 36.000 0.00 0.00 31.66 2.32
626 636 6.209391 AGTGATTACTTCCTTTGGTGAATTGG 59.791 38.462 0.00 0.00 31.66 3.16
631 641 5.857268 ACTTCCTTTGGTGAATTGGAAATG 58.143 37.500 0.00 0.00 36.52 2.32
635 645 1.274712 TGGTGAATTGGAAATGGGGC 58.725 50.000 0.00 0.00 0.00 5.80
676 686 1.509548 CCCCCAAAGGTGACCCTGAT 61.510 60.000 0.00 0.00 41.56 2.90
679 689 2.608623 CCCAAAGGTGACCCTGATTTT 58.391 47.619 0.00 0.00 41.56 1.82
681 691 3.006859 CCCAAAGGTGACCCTGATTTTTC 59.993 47.826 0.00 0.00 41.56 2.29
682 692 3.006859 CCAAAGGTGACCCTGATTTTTCC 59.993 47.826 0.00 0.00 41.56 3.13
683 693 3.897505 CAAAGGTGACCCTGATTTTTCCT 59.102 43.478 0.00 0.00 41.56 3.36
684 694 3.441500 AGGTGACCCTGATTTTTCCTC 57.558 47.619 0.00 0.00 40.58 3.71
685 695 2.084546 GGTGACCCTGATTTTTCCTCG 58.915 52.381 0.00 0.00 0.00 4.63
686 696 2.290071 GGTGACCCTGATTTTTCCTCGA 60.290 50.000 0.00 0.00 0.00 4.04
719 1829 1.537202 GAAACCTAGCTTGTGTGGCTG 59.463 52.381 0.00 0.00 40.52 4.85
721 1831 0.250467 ACCTAGCTTGTGTGGCTGTG 60.250 55.000 0.00 0.00 40.52 3.66
724 1852 0.472044 TAGCTTGTGTGGCTGTGGAA 59.528 50.000 0.00 0.00 40.52 3.53
727 1855 0.466189 CTTGTGTGGCTGTGGAACCT 60.466 55.000 0.00 0.00 34.36 3.50
737 1865 2.704572 CTGTGGAACCTCTGTCCAATC 58.295 52.381 0.00 0.00 35.05 2.67
739 1867 3.515502 CTGTGGAACCTCTGTCCAATCTA 59.484 47.826 0.00 0.00 35.05 1.98
750 1878 6.387192 TCTGTCCAATCTATTTCCCTTCAA 57.613 37.500 0.00 0.00 0.00 2.69
751 1879 6.180472 TCTGTCCAATCTATTTCCCTTCAAC 58.820 40.000 0.00 0.00 0.00 3.18
756 1884 8.047310 GTCCAATCTATTTCCCTTCAACTCTAA 58.953 37.037 0.00 0.00 0.00 2.10
758 1886 9.243105 CCAATCTATTTCCCTTCAACTCTAAAA 57.757 33.333 0.00 0.00 0.00 1.52
850 3088 3.081061 TCCACCGTCCATGATTCTTTTG 58.919 45.455 0.00 0.00 0.00 2.44
883 3130 3.625897 CCCAGCAGGTCGGTGTGA 61.626 66.667 0.00 0.00 41.76 3.58
969 3226 3.382832 ACTCCCCACTCGCCTTCG 61.383 66.667 0.00 0.00 0.00 3.79
1299 3701 3.070015 CCAATTGCAGTGAGGGTTTTCTT 59.930 43.478 0.00 0.00 0.00 2.52
1300 3702 4.443315 CCAATTGCAGTGAGGGTTTTCTTT 60.443 41.667 0.00 0.00 0.00 2.52
1302 3704 2.306847 TGCAGTGAGGGTTTTCTTTCC 58.693 47.619 0.00 0.00 0.00 3.13
1303 3705 2.091885 TGCAGTGAGGGTTTTCTTTCCT 60.092 45.455 0.00 0.00 0.00 3.36
1424 3844 4.644234 TGTTGCACAATTATCGGAATCCAT 59.356 37.500 0.00 0.00 0.00 3.41
1427 3847 3.057315 GCACAATTATCGGAATCCATGGG 60.057 47.826 13.02 0.00 0.00 4.00
1431 3851 1.497309 TATCGGAATCCATGGGCCCC 61.497 60.000 22.27 9.36 0.00 5.80
1718 4318 3.567164 CCCTGCAAAGCTATGGATTACAG 59.433 47.826 3.83 3.83 0.00 2.74
2173 5199 0.323725 CCATGTGCCTTTAGTGCCCT 60.324 55.000 0.00 0.00 0.00 5.19
2286 5372 2.034939 CACCATGTGCGGCAATTGATAT 59.965 45.455 10.34 0.00 0.00 1.63
2359 5644 1.081242 CACGCGCTGCCAATTTTCT 60.081 52.632 5.73 0.00 0.00 2.52
2478 7821 7.040271 TGGTCACCATTTATGATTGATATGCTG 60.040 37.037 0.00 0.00 0.00 4.41
2498 7842 4.094146 GCTGGTCTGAGTTAGAAGCATTTC 59.906 45.833 4.22 0.00 38.56 2.17
2518 8435 2.036475 TCTAGTATTGCCAGCTAGCAGC 59.964 50.000 18.83 19.33 45.13 5.25
2883 9013 3.429822 GCTTCATGCATGTGCTGGTTAAT 60.430 43.478 27.32 0.00 42.66 1.40
2966 9119 4.381566 GTCATCCATTTGTGTTTGCGTTAC 59.618 41.667 0.00 0.00 0.00 2.50
3171 10633 8.815189 CATTTAGAGATGTATGCGATGATAAGG 58.185 37.037 0.00 0.00 0.00 2.69
3425 11094 7.041235 CCTTTCCTATTTGCTTCTCTGATGATC 60.041 40.741 0.00 0.00 0.00 2.92
3850 11570 8.723942 AGTCCTTGACATGAAGAATTGTATAC 57.276 34.615 0.00 0.00 34.60 1.47
3851 11571 7.770897 AGTCCTTGACATGAAGAATTGTATACC 59.229 37.037 0.00 0.00 34.60 2.73
3971 11705 3.328637 CCTATGGATGGTGGATGTGATGA 59.671 47.826 0.00 0.00 0.00 2.92
4077 11823 2.933906 GTTTATGTAGCTGCGTGGCTTA 59.066 45.455 6.80 1.45 42.97 3.09
4078 11824 2.218953 TATGTAGCTGCGTGGCTTAC 57.781 50.000 6.80 6.89 42.97 2.34
4099 11845 2.422127 CGGACGAGGGCAATATTGTTTT 59.578 45.455 16.61 2.76 0.00 2.43
4143 11889 1.047801 GGCCTGTTTTGTGGATGGTT 58.952 50.000 0.00 0.00 0.00 3.67
4230 12258 4.455877 CACCCTTTCTCATGTAAACCACTC 59.544 45.833 0.00 0.00 0.00 3.51
4262 12296 4.892934 AGAGTCTTCATATCTGTGGTCTCC 59.107 45.833 0.00 0.00 0.00 3.71
4394 12534 2.727777 TCAGACTTCAGTTCGAACACG 58.272 47.619 28.78 19.24 0.00 4.49
4429 12569 6.403866 TGTTCATTGCAGACCTTTTGTATT 57.596 33.333 0.00 0.00 0.00 1.89
4435 12575 8.149647 TCATTGCAGACCTTTTGTATTGAATTT 58.850 29.630 0.00 0.00 0.00 1.82
4442 12582 9.423061 AGACCTTTTGTATTGAATTTTGCATAC 57.577 29.630 0.00 0.00 0.00 2.39
4462 12602 7.122501 TGCATACAAAACACATCATGGTAGATT 59.877 33.333 0.00 0.00 0.00 2.40
4487 12627 4.183101 TCCTTTTGAAAGCAAAGCACAAG 58.817 39.130 0.00 0.00 44.18 3.16
4505 12645 4.268405 CACAAGCAAACAGTTGTCATTTCC 59.732 41.667 0.00 0.00 34.62 3.13
4530 12671 5.165961 TCAGACTTTTCACCTCCCAATAG 57.834 43.478 0.00 0.00 0.00 1.73
4724 16440 9.630098 CAAATATAGATAATGTTGGATTGCCAC 57.370 33.333 0.00 0.00 45.94 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.289945 GGGCATGTGCAAAAACCCATTA 60.290 45.455 11.85 0.00 44.36 1.90
7 8 0.884259 GTGGGGCATGTGCAAAAACC 60.884 55.000 7.36 0.00 44.36 3.27
8 9 0.884259 GGTGGGGCATGTGCAAAAAC 60.884 55.000 7.36 0.00 44.36 2.43
9 10 1.449353 GGTGGGGCATGTGCAAAAA 59.551 52.632 7.36 0.00 44.36 1.94
10 11 2.515071 GGGTGGGGCATGTGCAAAA 61.515 57.895 7.36 0.00 44.36 2.44
11 12 2.921972 GGGTGGGGCATGTGCAAA 60.922 61.111 7.36 0.00 44.36 3.68
12 13 3.542864 ATGGGTGGGGCATGTGCAA 62.543 57.895 7.36 0.00 44.36 4.08
13 14 2.160406 TAATGGGTGGGGCATGTGCA 62.160 55.000 7.36 0.00 44.36 4.57
14 15 1.381056 TAATGGGTGGGGCATGTGC 60.381 57.895 0.00 0.00 41.14 4.57
15 16 0.033208 ACTAATGGGTGGGGCATGTG 60.033 55.000 0.00 0.00 0.00 3.21
16 17 0.258774 GACTAATGGGTGGGGCATGT 59.741 55.000 0.00 0.00 0.00 3.21
17 18 0.468029 GGACTAATGGGTGGGGCATG 60.468 60.000 0.00 0.00 0.00 4.06
18 19 1.930520 GGACTAATGGGTGGGGCAT 59.069 57.895 0.00 0.00 0.00 4.40
19 20 2.675242 CGGACTAATGGGTGGGGCA 61.675 63.158 0.00 0.00 0.00 5.36
20 21 2.192175 CGGACTAATGGGTGGGGC 59.808 66.667 0.00 0.00 0.00 5.80
21 22 1.525442 GTCGGACTAATGGGTGGGG 59.475 63.158 0.00 0.00 0.00 4.96
22 23 1.143183 CGTCGGACTAATGGGTGGG 59.857 63.158 6.57 0.00 0.00 4.61
23 24 0.459585 CACGTCGGACTAATGGGTGG 60.460 60.000 6.57 0.00 0.00 4.61
24 25 0.459585 CCACGTCGGACTAATGGGTG 60.460 60.000 6.57 5.70 36.56 4.61
25 26 1.895238 CCACGTCGGACTAATGGGT 59.105 57.895 6.57 0.00 36.56 4.51
26 27 1.520787 GCCACGTCGGACTAATGGG 60.521 63.158 18.70 9.39 36.56 4.00
27 28 1.876714 CGCCACGTCGGACTAATGG 60.877 63.158 14.97 14.97 36.56 3.16
28 29 3.688136 CGCCACGTCGGACTAATG 58.312 61.111 6.57 2.14 36.56 1.90
36 37 4.695231 AACGAGTCCGCCACGTCG 62.695 66.667 0.00 0.00 39.31 5.12
37 38 2.804090 GAACGAGTCCGCCACGTC 60.804 66.667 0.00 0.00 39.31 4.34
38 39 4.695231 CGAACGAGTCCGCCACGT 62.695 66.667 0.00 0.00 41.97 4.49
61 62 0.603975 GGATATGGGAACGCTCAGGC 60.604 60.000 0.00 0.00 0.00 4.85
62 63 0.319900 CGGATATGGGAACGCTCAGG 60.320 60.000 0.00 0.00 0.00 3.86
63 64 3.201342 CGGATATGGGAACGCTCAG 57.799 57.895 0.00 0.00 0.00 3.35
68 69 2.032071 GGGGCGGATATGGGAACG 59.968 66.667 0.00 0.00 0.00 3.95
69 70 2.434774 GGGGGCGGATATGGGAAC 59.565 66.667 0.00 0.00 0.00 3.62
70 71 2.039298 TGGGGGCGGATATGGGAA 60.039 61.111 0.00 0.00 0.00 3.97
71 72 2.852075 GTGGGGGCGGATATGGGA 60.852 66.667 0.00 0.00 0.00 4.37
72 73 1.204786 TATGTGGGGGCGGATATGGG 61.205 60.000 0.00 0.00 0.00 4.00
73 74 0.918983 ATATGTGGGGGCGGATATGG 59.081 55.000 0.00 0.00 0.00 2.74
74 75 1.408683 CCATATGTGGGGGCGGATATG 60.409 57.143 0.00 0.00 42.11 1.78
75 76 0.918983 CCATATGTGGGGGCGGATAT 59.081 55.000 0.00 0.00 42.11 1.63
76 77 2.382526 CCATATGTGGGGGCGGATA 58.617 57.895 0.00 0.00 42.11 2.59
77 78 3.170362 CCATATGTGGGGGCGGAT 58.830 61.111 0.00 0.00 42.11 4.18
85 86 4.141321 CCCTCATATCCATCCCATATGTGG 60.141 50.000 0.51 0.51 42.50 4.17
86 87 4.723285 TCCCTCATATCCATCCCATATGTG 59.277 45.833 1.24 0.00 36.16 3.21
87 88 4.976734 TCCCTCATATCCATCCCATATGT 58.023 43.478 1.24 0.00 36.16 2.29
88 89 5.371769 ACATCCCTCATATCCATCCCATATG 59.628 44.000 0.00 0.00 36.08 1.78
89 90 5.555426 ACATCCCTCATATCCATCCCATAT 58.445 41.667 0.00 0.00 0.00 1.78
90 91 4.971282 GACATCCCTCATATCCATCCCATA 59.029 45.833 0.00 0.00 0.00 2.74
91 92 3.784763 GACATCCCTCATATCCATCCCAT 59.215 47.826 0.00 0.00 0.00 4.00
92 93 3.184628 GACATCCCTCATATCCATCCCA 58.815 50.000 0.00 0.00 0.00 4.37
93 94 3.184628 TGACATCCCTCATATCCATCCC 58.815 50.000 0.00 0.00 0.00 3.85
94 95 4.081198 GTCTGACATCCCTCATATCCATCC 60.081 50.000 2.24 0.00 0.00 3.51
95 96 4.529769 TGTCTGACATCCCTCATATCCATC 59.470 45.833 6.36 0.00 0.00 3.51
96 97 4.496540 TGTCTGACATCCCTCATATCCAT 58.503 43.478 6.36 0.00 0.00 3.41
97 98 3.927476 TGTCTGACATCCCTCATATCCA 58.073 45.455 6.36 0.00 0.00 3.41
98 99 4.503991 GGTTGTCTGACATCCCTCATATCC 60.504 50.000 21.94 5.82 33.01 2.59
99 100 4.636249 GGTTGTCTGACATCCCTCATATC 58.364 47.826 21.94 0.00 33.01 1.63
100 101 4.696479 GGTTGTCTGACATCCCTCATAT 57.304 45.455 21.94 0.00 33.01 1.78
108 109 1.066143 ACGGATGGGTTGTCTGACATC 60.066 52.381 11.86 10.70 39.11 3.06
109 110 0.984230 ACGGATGGGTTGTCTGACAT 59.016 50.000 11.86 0.00 0.00 3.06
110 111 0.762418 AACGGATGGGTTGTCTGACA 59.238 50.000 6.36 6.36 0.00 3.58
111 112 1.535462 CAAACGGATGGGTTGTCTGAC 59.465 52.381 0.00 0.00 0.00 3.51
112 113 1.544537 CCAAACGGATGGGTTGTCTGA 60.545 52.381 1.01 0.00 36.79 3.27
113 114 0.881118 CCAAACGGATGGGTTGTCTG 59.119 55.000 1.01 0.00 36.79 3.51
114 115 3.339547 CCAAACGGATGGGTTGTCT 57.660 52.632 1.01 0.00 36.79 3.41
123 124 2.035626 CACCCAGCCCAAACGGAT 59.964 61.111 0.00 0.00 0.00 4.18
124 125 3.494254 ACACCCAGCCCAAACGGA 61.494 61.111 0.00 0.00 0.00 4.69
125 126 3.294493 CACACCCAGCCCAAACGG 61.294 66.667 0.00 0.00 0.00 4.44
126 127 2.518349 ACACACCCAGCCCAAACG 60.518 61.111 0.00 0.00 0.00 3.60
127 128 1.756561 ACACACACCCAGCCCAAAC 60.757 57.895 0.00 0.00 0.00 2.93
128 129 1.756172 CACACACACCCAGCCCAAA 60.756 57.895 0.00 0.00 0.00 3.28
129 130 2.123939 CACACACACCCAGCCCAA 60.124 61.111 0.00 0.00 0.00 4.12
130 131 4.202574 CCACACACACCCAGCCCA 62.203 66.667 0.00 0.00 0.00 5.36
131 132 4.974721 CCCACACACACCCAGCCC 62.975 72.222 0.00 0.00 0.00 5.19
132 133 2.748058 CTACCCACACACACCCAGCC 62.748 65.000 0.00 0.00 0.00 4.85
133 134 1.302511 CTACCCACACACACCCAGC 60.303 63.158 0.00 0.00 0.00 4.85
134 135 0.472471 AACTACCCACACACACCCAG 59.528 55.000 0.00 0.00 0.00 4.45
135 136 0.181587 CAACTACCCACACACACCCA 59.818 55.000 0.00 0.00 0.00 4.51
136 137 0.470766 TCAACTACCCACACACACCC 59.529 55.000 0.00 0.00 0.00 4.61
137 138 1.140252 ACTCAACTACCCACACACACC 59.860 52.381 0.00 0.00 0.00 4.16
138 139 2.210116 CACTCAACTACCCACACACAC 58.790 52.381 0.00 0.00 0.00 3.82
139 140 1.140052 CCACTCAACTACCCACACACA 59.860 52.381 0.00 0.00 0.00 3.72
140 141 1.878953 CCACTCAACTACCCACACAC 58.121 55.000 0.00 0.00 0.00 3.82
141 142 0.107831 GCCACTCAACTACCCACACA 59.892 55.000 0.00 0.00 0.00 3.72
142 143 0.107831 TGCCACTCAACTACCCACAC 59.892 55.000 0.00 0.00 0.00 3.82
143 144 0.840617 TTGCCACTCAACTACCCACA 59.159 50.000 0.00 0.00 0.00 4.17
144 145 2.200373 ATTGCCACTCAACTACCCAC 57.800 50.000 0.00 0.00 37.53 4.61
145 146 2.969821 AATTGCCACTCAACTACCCA 57.030 45.000 0.00 0.00 37.53 4.51
146 147 3.320826 ACAAAATTGCCACTCAACTACCC 59.679 43.478 0.00 0.00 37.53 3.69
147 148 4.298332 CACAAAATTGCCACTCAACTACC 58.702 43.478 0.00 0.00 37.53 3.18
148 149 4.298332 CCACAAAATTGCCACTCAACTAC 58.702 43.478 0.00 0.00 37.53 2.73
149 150 3.243704 GCCACAAAATTGCCACTCAACTA 60.244 43.478 0.00 0.00 37.53 2.24
150 151 2.483538 GCCACAAAATTGCCACTCAACT 60.484 45.455 0.00 0.00 37.53 3.16
151 152 1.866601 GCCACAAAATTGCCACTCAAC 59.133 47.619 0.00 0.00 37.53 3.18
152 153 1.202627 GGCCACAAAATTGCCACTCAA 60.203 47.619 0.00 0.00 44.70 3.02
153 154 0.392336 GGCCACAAAATTGCCACTCA 59.608 50.000 0.00 0.00 44.70 3.41
154 155 0.667184 CGGCCACAAAATTGCCACTC 60.667 55.000 2.24 0.00 45.63 3.51
155 156 1.367102 CGGCCACAAAATTGCCACT 59.633 52.632 2.24 0.00 45.63 4.00
156 157 1.667510 CCGGCCACAAAATTGCCAC 60.668 57.895 2.24 0.00 45.63 5.01
157 158 2.739784 CCGGCCACAAAATTGCCA 59.260 55.556 2.24 0.00 45.63 4.92
158 159 2.047370 CCCGGCCACAAAATTGCC 60.047 61.111 2.24 0.00 41.85 4.52
159 160 2.741985 GCCCGGCCACAAAATTGC 60.742 61.111 2.24 0.00 0.00 3.56
160 161 1.374505 CAGCCCGGCCACAAAATTG 60.375 57.895 5.55 0.00 0.00 2.32
161 162 1.836604 ACAGCCCGGCCACAAAATT 60.837 52.632 5.55 0.00 0.00 1.82
162 163 2.203625 ACAGCCCGGCCACAAAAT 60.204 55.556 5.55 0.00 0.00 1.82
163 164 3.222855 CACAGCCCGGCCACAAAA 61.223 61.111 5.55 0.00 0.00 2.44
164 165 4.514585 ACACAGCCCGGCCACAAA 62.515 61.111 5.55 0.00 0.00 2.83
165 166 4.947147 GACACAGCCCGGCCACAA 62.947 66.667 5.55 0.00 0.00 3.33
173 174 3.462199 GATAGCCGGGACACAGCCC 62.462 68.421 2.18 0.00 45.10 5.19
174 175 2.109181 GATAGCCGGGACACAGCC 59.891 66.667 2.18 0.00 0.00 4.85
175 176 2.109181 GGATAGCCGGGACACAGC 59.891 66.667 2.18 0.00 0.00 4.40
176 177 1.742768 GAGGATAGCCGGGACACAG 59.257 63.158 2.18 0.00 39.96 3.66
177 178 1.760875 GGAGGATAGCCGGGACACA 60.761 63.158 2.18 0.00 39.96 3.72
178 179 0.178970 TAGGAGGATAGCCGGGACAC 60.179 60.000 2.18 0.00 39.96 3.67
179 180 0.112606 CTAGGAGGATAGCCGGGACA 59.887 60.000 2.18 0.00 39.96 4.02
180 181 0.404812 TCTAGGAGGATAGCCGGGAC 59.595 60.000 2.18 0.00 39.96 4.46
181 182 0.404812 GTCTAGGAGGATAGCCGGGA 59.595 60.000 2.18 0.00 39.96 5.14
182 183 0.961358 CGTCTAGGAGGATAGCCGGG 60.961 65.000 2.18 0.00 39.96 5.73
183 184 0.250814 ACGTCTAGGAGGATAGCCGG 60.251 60.000 0.00 0.00 39.96 6.13
184 185 1.606903 AACGTCTAGGAGGATAGCCG 58.393 55.000 0.00 0.00 39.96 5.52
185 186 3.506844 CCTAAACGTCTAGGAGGATAGCC 59.493 52.174 9.50 0.00 41.02 3.93
186 187 3.506844 CCCTAAACGTCTAGGAGGATAGC 59.493 52.174 16.83 0.00 41.02 2.97
187 188 4.080687 CCCCTAAACGTCTAGGAGGATAG 58.919 52.174 16.83 0.00 41.02 2.08
188 189 3.181425 CCCCCTAAACGTCTAGGAGGATA 60.181 52.174 16.83 0.00 38.88 2.59
189 190 2.425975 CCCCCTAAACGTCTAGGAGGAT 60.426 54.545 16.83 0.00 38.88 3.24
190 191 1.063417 CCCCCTAAACGTCTAGGAGGA 60.063 57.143 16.83 0.00 38.88 3.71
191 192 1.063417 TCCCCCTAAACGTCTAGGAGG 60.063 57.143 16.83 12.98 41.02 4.30
192 193 2.449137 TCCCCCTAAACGTCTAGGAG 57.551 55.000 16.83 2.60 41.02 3.69
193 194 2.517127 AGATCCCCCTAAACGTCTAGGA 59.483 50.000 16.83 4.46 41.02 2.94
194 195 2.960163 AGATCCCCCTAAACGTCTAGG 58.040 52.381 8.06 8.06 38.61 3.02
195 196 3.958798 TCAAGATCCCCCTAAACGTCTAG 59.041 47.826 0.00 0.00 0.00 2.43
196 197 3.958798 CTCAAGATCCCCCTAAACGTCTA 59.041 47.826 0.00 0.00 0.00 2.59
197 198 2.766828 CTCAAGATCCCCCTAAACGTCT 59.233 50.000 0.00 0.00 0.00 4.18
198 199 2.158943 CCTCAAGATCCCCCTAAACGTC 60.159 54.545 0.00 0.00 0.00 4.34
199 200 1.838077 CCTCAAGATCCCCCTAAACGT 59.162 52.381 0.00 0.00 0.00 3.99
200 201 2.103263 CTCCTCAAGATCCCCCTAAACG 59.897 54.545 0.00 0.00 0.00 3.60
201 202 3.116174 ACTCCTCAAGATCCCCCTAAAC 58.884 50.000 0.00 0.00 0.00 2.01
202 203 3.508952 ACTCCTCAAGATCCCCCTAAA 57.491 47.619 0.00 0.00 0.00 1.85
203 204 3.508952 AACTCCTCAAGATCCCCCTAA 57.491 47.619 0.00 0.00 0.00 2.69
204 205 3.115390 CAAACTCCTCAAGATCCCCCTA 58.885 50.000 0.00 0.00 0.00 3.53
205 206 1.918957 CAAACTCCTCAAGATCCCCCT 59.081 52.381 0.00 0.00 0.00 4.79
206 207 1.064389 CCAAACTCCTCAAGATCCCCC 60.064 57.143 0.00 0.00 0.00 5.40
207 208 1.636003 ACCAAACTCCTCAAGATCCCC 59.364 52.381 0.00 0.00 0.00 4.81
208 209 3.084786 CAACCAAACTCCTCAAGATCCC 58.915 50.000 0.00 0.00 0.00 3.85
209 210 3.756117 ACAACCAAACTCCTCAAGATCC 58.244 45.455 0.00 0.00 0.00 3.36
210 211 5.794894 TCTACAACCAAACTCCTCAAGATC 58.205 41.667 0.00 0.00 0.00 2.75
211 212 5.825593 TCTACAACCAAACTCCTCAAGAT 57.174 39.130 0.00 0.00 0.00 2.40
212 213 5.611374 CTTCTACAACCAAACTCCTCAAGA 58.389 41.667 0.00 0.00 0.00 3.02
213 214 4.214332 GCTTCTACAACCAAACTCCTCAAG 59.786 45.833 0.00 0.00 0.00 3.02
214 215 4.134563 GCTTCTACAACCAAACTCCTCAA 58.865 43.478 0.00 0.00 0.00 3.02
215 216 3.391296 AGCTTCTACAACCAAACTCCTCA 59.609 43.478 0.00 0.00 0.00 3.86
216 217 3.997681 GAGCTTCTACAACCAAACTCCTC 59.002 47.826 0.00 0.00 0.00 3.71
217 218 3.648545 AGAGCTTCTACAACCAAACTCCT 59.351 43.478 0.00 0.00 0.00 3.69
218 219 4.009370 AGAGCTTCTACAACCAAACTCC 57.991 45.455 0.00 0.00 0.00 3.85
219 220 5.989777 TGTAAGAGCTTCTACAACCAAACTC 59.010 40.000 6.42 0.00 0.00 3.01
220 221 5.925509 TGTAAGAGCTTCTACAACCAAACT 58.074 37.500 6.42 0.00 0.00 2.66
221 222 6.348540 CCATGTAAGAGCTTCTACAACCAAAC 60.349 42.308 11.54 0.00 0.00 2.93
222 223 5.705441 CCATGTAAGAGCTTCTACAACCAAA 59.295 40.000 11.54 0.00 0.00 3.28
223 224 5.012664 TCCATGTAAGAGCTTCTACAACCAA 59.987 40.000 11.54 0.00 0.00 3.67
224 225 4.530553 TCCATGTAAGAGCTTCTACAACCA 59.469 41.667 11.54 0.00 0.00 3.67
225 226 5.086104 TCCATGTAAGAGCTTCTACAACC 57.914 43.478 11.54 0.00 0.00 3.77
226 227 6.166982 ACTTCCATGTAAGAGCTTCTACAAC 58.833 40.000 4.87 1.57 0.00 3.32
227 228 6.360370 ACTTCCATGTAAGAGCTTCTACAA 57.640 37.500 4.87 0.00 0.00 2.41
228 229 6.211584 AGAACTTCCATGTAAGAGCTTCTACA 59.788 38.462 4.87 10.30 0.00 2.74
229 230 6.635755 AGAACTTCCATGTAAGAGCTTCTAC 58.364 40.000 4.87 0.00 0.00 2.59
230 231 6.859112 AGAACTTCCATGTAAGAGCTTCTA 57.141 37.500 4.87 0.00 0.00 2.10
231 232 5.753721 AGAACTTCCATGTAAGAGCTTCT 57.246 39.130 4.87 1.27 0.00 2.85
232 233 7.766278 TCATTAGAACTTCCATGTAAGAGCTTC 59.234 37.037 4.87 0.00 0.00 3.86
233 234 7.624549 TCATTAGAACTTCCATGTAAGAGCTT 58.375 34.615 4.87 0.00 0.00 3.74
234 235 7.187824 TCATTAGAACTTCCATGTAAGAGCT 57.812 36.000 4.87 4.22 0.00 4.09
235 236 7.497249 ACATCATTAGAACTTCCATGTAAGAGC 59.503 37.037 4.87 0.00 0.00 4.09
236 237 8.954950 ACATCATTAGAACTTCCATGTAAGAG 57.045 34.615 4.87 0.00 0.00 2.85
298 299 7.709182 AGAATGTTTGGGTTTTAGTGTTTTAGC 59.291 33.333 0.00 0.00 0.00 3.09
329 330 4.997395 TGCAACTAGTGTTTTTGCCAAAAA 59.003 33.333 11.16 11.16 44.14 1.94
330 331 4.569943 TGCAACTAGTGTTTTTGCCAAAA 58.430 34.783 12.70 0.00 44.14 2.44
331 332 4.180057 CTGCAACTAGTGTTTTTGCCAAA 58.820 39.130 12.70 0.00 44.14 3.28
333 334 2.100584 CCTGCAACTAGTGTTTTTGCCA 59.899 45.455 12.70 2.50 44.14 4.92
334 335 2.742774 CCTGCAACTAGTGTTTTTGCC 58.257 47.619 12.70 0.00 44.14 4.52
345 346 2.577606 TTTTGGCTAGCCTGCAACTA 57.422 45.000 33.07 9.58 36.94 2.24
347 348 2.000429 CATTTTGGCTAGCCTGCAAC 58.000 50.000 33.07 7.40 36.94 4.17
349 350 0.899253 TGCATTTTGGCTAGCCTGCA 60.899 50.000 33.06 33.06 39.94 4.41
350 351 0.459063 GTGCATTTTGGCTAGCCTGC 60.459 55.000 33.07 31.08 35.10 4.85
352 353 1.937546 GCGTGCATTTTGGCTAGCCT 61.938 55.000 33.07 11.61 36.94 4.58
363 364 0.250727 AAGTACCAGTGGCGTGCATT 60.251 50.000 9.78 0.00 0.00 3.56
364 365 0.250727 AAAGTACCAGTGGCGTGCAT 60.251 50.000 9.78 0.00 0.00 3.96
365 366 0.882927 GAAAGTACCAGTGGCGTGCA 60.883 55.000 9.78 0.00 0.00 4.57
366 367 0.602905 AGAAAGTACCAGTGGCGTGC 60.603 55.000 9.78 0.00 0.00 5.34
367 368 2.736144 TAGAAAGTACCAGTGGCGTG 57.264 50.000 9.78 0.00 0.00 5.34
368 369 4.465305 ACTTATAGAAAGTACCAGTGGCGT 59.535 41.667 9.78 0.00 0.00 5.68
369 370 5.007385 ACTTATAGAAAGTACCAGTGGCG 57.993 43.478 9.78 0.00 0.00 5.69
370 371 5.974108 TGACTTATAGAAAGTACCAGTGGC 58.026 41.667 9.78 0.00 0.00 5.01
371 372 8.012957 AGATGACTTATAGAAAGTACCAGTGG 57.987 38.462 7.91 7.91 0.00 4.00
397 398 5.720371 TGTGGTCTCCAATGGTAATTTTG 57.280 39.130 0.00 0.00 34.18 2.44
414 415 3.284449 GGCCGCGACTTTTGTGGT 61.284 61.111 8.23 0.00 39.23 4.16
429 430 0.179045 AATGAGGTATCAGTGGCGGC 60.179 55.000 0.00 0.00 39.29 6.53
443 444 3.316308 GCAGCCCACCATTAGTAAATGAG 59.684 47.826 0.00 0.00 44.50 2.90
445 446 3.023119 TGCAGCCCACCATTAGTAAATG 58.977 45.455 0.00 0.00 41.90 2.32
446 447 3.380471 TGCAGCCCACCATTAGTAAAT 57.620 42.857 0.00 0.00 0.00 1.40
447 448 2.889170 TGCAGCCCACCATTAGTAAA 57.111 45.000 0.00 0.00 0.00 2.01
454 455 0.968901 CACAGATTGCAGCCCACCAT 60.969 55.000 0.00 0.00 0.00 3.55
457 458 1.878775 GACACAGATTGCAGCCCAC 59.121 57.895 0.00 0.00 0.00 4.61
458 459 1.672030 CGACACAGATTGCAGCCCA 60.672 57.895 0.00 0.00 0.00 5.36
476 477 5.036117 TCTGGATGAAAATACTAGTGGCC 57.964 43.478 5.39 0.00 0.00 5.36
508 509 1.676006 CCCGACACTCATATTTTGGCC 59.324 52.381 0.00 0.00 0.00 5.36
539 540 1.282930 GGCGGACGTGACTTTGAGTC 61.283 60.000 0.00 1.21 45.26 3.36
542 543 1.593209 GTGGCGGACGTGACTTTGA 60.593 57.895 0.00 0.00 0.00 2.69
546 547 3.991051 CCAGTGGCGGACGTGACT 61.991 66.667 0.00 0.00 0.00 3.41
569 570 3.181434 TGATTCCCAGCCAGTTGTAACTT 60.181 43.478 0.00 0.00 37.08 2.66
583 584 2.761767 CACTTGCATGGATTGATTCCCA 59.238 45.455 4.44 0.00 44.77 4.37
587 597 7.414222 AAGTAATCACTTGCATGGATTGATT 57.586 32.000 20.94 20.94 43.50 2.57
602 612 6.208599 TCCAATTCACCAAAGGAAGTAATCAC 59.791 38.462 0.00 0.00 0.00 3.06
622 632 2.190538 CCTTTCTGCCCCATTTCCAAT 58.809 47.619 0.00 0.00 0.00 3.16
623 633 1.148867 TCCTTTCTGCCCCATTTCCAA 59.851 47.619 0.00 0.00 0.00 3.53
624 634 0.783206 TCCTTTCTGCCCCATTTCCA 59.217 50.000 0.00 0.00 0.00 3.53
625 635 2.165357 ATCCTTTCTGCCCCATTTCC 57.835 50.000 0.00 0.00 0.00 3.13
626 636 3.369175 AGAATCCTTTCTGCCCCATTTC 58.631 45.455 0.00 0.00 40.74 2.17
631 641 1.133945 GGAGAGAATCCTTTCTGCCCC 60.134 57.143 0.00 0.00 45.64 5.80
693 1803 4.214332 CCACACAAGCTAGGTTTCTTCTTC 59.786 45.833 3.96 0.00 0.00 2.87
696 1806 2.226674 GCCACACAAGCTAGGTTTCTTC 59.773 50.000 3.96 0.00 0.00 2.87
699 1809 1.537202 CAGCCACACAAGCTAGGTTTC 59.463 52.381 3.96 0.00 38.95 2.78
703 1813 0.957395 CCACAGCCACACAAGCTAGG 60.957 60.000 0.00 0.00 38.95 3.02
707 1817 1.360192 GTTCCACAGCCACACAAGC 59.640 57.895 0.00 0.00 0.00 4.01
719 1829 4.762289 ATAGATTGGACAGAGGTTCCAC 57.238 45.455 0.00 0.00 32.63 4.02
721 1831 5.126779 GGAAATAGATTGGACAGAGGTTCC 58.873 45.833 0.00 0.00 0.00 3.62
724 1852 4.375313 AGGGAAATAGATTGGACAGAGGT 58.625 43.478 0.00 0.00 0.00 3.85
727 1855 6.012508 AGTTGAAGGGAAATAGATTGGACAGA 60.013 38.462 0.00 0.00 0.00 3.41
769 3006 7.480760 AAAAAGGGCAGATGCTATCTTTTTA 57.519 32.000 25.72 0.00 43.74 1.52
799 3036 2.879026 GCGGTTTCCTTCTTGTCTTCTT 59.121 45.455 0.00 0.00 0.00 2.52
801 3038 1.194772 CGCGGTTTCCTTCTTGTCTTC 59.805 52.381 0.00 0.00 0.00 2.87
882 3129 6.824196 TCGGGTATATAGTCAGATCAGATGTC 59.176 42.308 0.00 0.00 0.00 3.06
883 3130 6.600032 GTCGGGTATATAGTCAGATCAGATGT 59.400 42.308 0.00 0.00 0.00 3.06
969 3226 1.742880 GGTAGGGTTTTCGCGGGAC 60.743 63.158 6.13 2.26 37.84 4.46
1299 3701 6.605594 TCTGCTTCTTTTACCAAGAAAAGGAA 59.394 34.615 8.36 0.93 43.61 3.36
1300 3702 6.126409 TCTGCTTCTTTTACCAAGAAAAGGA 58.874 36.000 8.36 0.13 43.61 3.36
1302 3704 7.032377 ACTCTGCTTCTTTTACCAAGAAAAG 57.968 36.000 2.85 2.85 44.41 2.27
1303 3705 8.567948 CATACTCTGCTTCTTTTACCAAGAAAA 58.432 33.333 0.00 0.00 36.01 2.29
1424 3844 0.555769 GATCTACCAAATGGGGCCCA 59.444 55.000 30.97 30.97 42.91 5.36
1427 3847 3.117888 TCTTCAGATCTACCAAATGGGGC 60.118 47.826 4.17 0.00 42.91 5.80
1568 4066 3.591196 AATGGCACGCATACAAATTGT 57.409 38.095 3.43 3.43 0.00 2.71
1626 4143 3.463048 AGGCCCTCAAAATCAGACATT 57.537 42.857 0.00 0.00 0.00 2.71
2199 5240 8.298140 AGTACGAAAATATCTACTAGCCATGTC 58.702 37.037 0.00 0.00 0.00 3.06
2286 5372 9.979578 AAATGCTTCACAATAACAGTATGAAAA 57.020 25.926 0.00 0.00 39.69 2.29
2359 5644 5.424757 GTGTCTACCATTTGCACAGGTATA 58.575 41.667 10.55 2.94 37.28 1.47
2478 7821 6.635755 ACTAGAAATGCTTCTAACTCAGACC 58.364 40.000 0.00 0.00 42.35 3.85
2498 7842 2.224137 TGCTGCTAGCTGGCAATACTAG 60.224 50.000 25.71 13.75 42.97 2.57
2518 8435 7.454260 AGCAAGGTCTTCTAAAAAGGTAATG 57.546 36.000 0.00 0.00 0.00 1.90
2571 8491 6.515272 AGGTTACTGTTTGCCAATATCTTG 57.485 37.500 0.00 0.00 0.00 3.02
2837 8800 7.279536 AGCATCTATTGTCTTATCACAACACTG 59.720 37.037 0.00 0.00 39.09 3.66
2966 9119 2.546373 CCCAAAATGCAGTGGTGAACAG 60.546 50.000 11.69 0.00 32.60 3.16
3106 10563 7.636259 TTTGACTAAACAATAAAGCACATGC 57.364 32.000 0.00 0.00 42.49 4.06
3171 10633 7.126398 CGGCTACTAAATGAACTAATTGCTTC 58.874 38.462 0.00 0.00 0.00 3.86
3425 11094 1.593196 TGAACCCAAAGACGAGCAAG 58.407 50.000 0.00 0.00 0.00 4.01
3850 11570 2.575993 CAGCGAGACAGACCAGGG 59.424 66.667 0.00 0.00 0.00 4.45
3851 11571 2.575993 CCAGCGAGACAGACCAGG 59.424 66.667 0.00 0.00 0.00 4.45
3971 11705 4.816385 CCAATCCAGCACGTCTAAATACAT 59.184 41.667 0.00 0.00 0.00 2.29
4077 11823 0.539986 ACAATATTGCCCTCGTCCGT 59.460 50.000 15.48 0.00 0.00 4.69
4078 11824 1.663695 AACAATATTGCCCTCGTCCG 58.336 50.000 15.48 0.00 0.00 4.79
4099 11845 6.641169 AGAGACGAATTCATATGTGCTAGA 57.359 37.500 6.22 0.00 0.00 2.43
4171 12174 5.116882 GGCGTAGAATAGGTCTGATTGTTT 58.883 41.667 0.00 0.00 37.12 2.83
4230 12258 9.247126 CACAGATATGAAGACTCTGATTTACTG 57.753 37.037 5.84 0.00 38.96 2.74
4262 12296 2.186076 GTCTTCGCAACCTCTATGTCG 58.814 52.381 0.00 0.00 0.00 4.35
4364 12504 8.777865 TCGAACTGAAGTCTGAATCAAATATT 57.222 30.769 0.00 0.00 0.00 1.28
4435 12575 5.465532 ACCATGATGTGTTTTGTATGCAA 57.534 34.783 0.00 0.00 0.00 4.08
4442 12582 7.067859 AGGATGAATCTACCATGATGTGTTTTG 59.932 37.037 0.00 0.00 0.00 2.44
4453 12593 6.664816 TGCTTTCAAAAGGATGAATCTACCAT 59.335 34.615 4.76 0.00 38.98 3.55
4462 12602 4.141981 TGTGCTTTGCTTTCAAAAGGATGA 60.142 37.500 4.76 0.00 41.22 2.92
4487 12627 6.012658 TGATAGGAAATGACAACTGTTTGC 57.987 37.500 0.00 0.00 36.00 3.68
4505 12645 4.826274 TGGGAGGTGAAAAGTCTGATAG 57.174 45.455 0.00 0.00 0.00 2.08
4530 12671 2.817839 GCATGGGGTGGTATTATGGGTC 60.818 54.545 0.00 0.00 0.00 4.46
4708 12861 6.061022 TCTAAGAGTGGCAATCCAACATTA 57.939 37.500 11.86 2.61 45.53 1.90
4724 16440 4.759183 ACCTTTTGAAGCAGCTTCTAAGAG 59.241 41.667 31.42 26.08 40.73 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.