Multiple sequence alignment - TraesCS3D01G476200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G476200 chr3D 100.000 2189 0 0 1 2189 577153115 577150927 0.000000e+00 4043.0
1 TraesCS3D01G476200 chr3D 85.333 75 11 0 179 253 577143573 577143499 6.480000e-11 78.7
2 TraesCS3D01G476200 chr3D 96.875 32 1 0 1508 1539 610891887 610891918 1.000000e-03 54.7
3 TraesCS3D01G476200 chr3A 88.121 1187 96 21 83 1236 712309004 712310178 0.000000e+00 1369.0
4 TraesCS3D01G476200 chr3A 94.149 188 10 1 1237 1424 712310394 712310580 3.560000e-73 285.0
5 TraesCS3D01G476200 chr3A 78.344 314 34 20 1 296 712355067 712355364 2.890000e-39 172.0
6 TraesCS3D01G476200 chr3A 83.893 149 13 8 29 174 711301931 711301791 4.900000e-27 132.0
7 TraesCS3D01G476200 chr3A 86.076 79 10 1 1485 1562 43285086 43285008 1.390000e-12 84.2
8 TraesCS3D01G476200 chr3B 88.426 1080 86 19 1 1046 766832668 766831594 0.000000e+00 1266.0
9 TraesCS3D01G476200 chr3B 86.994 815 60 23 1 796 768513169 768513956 0.000000e+00 876.0
10 TraesCS3D01G476200 chr3B 90.710 366 24 4 1098 1454 766831588 766831224 1.520000e-131 479.0
11 TraesCS3D01G476200 chr3B 86.347 271 15 9 1561 1815 766831226 766830962 2.140000e-70 276.0
12 TraesCS3D01G476200 chr3B 93.333 75 5 0 1473 1547 762342208 762342134 6.390000e-21 111.0
13 TraesCS3D01G476200 chr3B 86.111 72 9 1 1492 1563 178386621 178386551 2.330000e-10 76.8
14 TraesCS3D01G476200 chr5D 92.537 268 13 3 930 1190 503292833 503293100 5.700000e-101 377.0
15 TraesCS3D01G476200 chr5D 92.537 268 13 3 930 1190 512411148 512411415 5.700000e-101 377.0
16 TraesCS3D01G476200 chr5D 92.537 268 13 3 930 1190 512418085 512418352 5.700000e-101 377.0
17 TraesCS3D01G476200 chr2D 92.537 268 13 3 930 1190 638425467 638425734 5.700000e-101 377.0
18 TraesCS3D01G476200 chr4B 91.941 273 15 3 924 1190 308678809 308678538 2.050000e-100 375.0
19 TraesCS3D01G476200 chr1D 91.241 274 16 4 924 1190 51870988 51870716 1.230000e-97 366.0
20 TraesCS3D01G476200 chr1D 91.791 268 15 3 930 1190 254435995 254436262 1.230000e-97 366.0
21 TraesCS3D01G476200 chr5A 90.681 279 17 5 919 1190 657452548 657452824 1.600000e-96 363.0
22 TraesCS3D01G476200 chr2B 76.207 290 42 18 316 600 655845078 655844811 6.340000e-26 128.0
23 TraesCS3D01G476200 chr7B 81.250 96 15 3 1473 1567 725173708 725173615 8.380000e-10 75.0
24 TraesCS3D01G476200 chr7A 82.278 79 12 2 1486 1563 116778632 116778555 1.400000e-07 67.6
25 TraesCS3D01G476200 chrUn 94.444 36 2 0 1492 1527 63108528 63108493 3.040000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G476200 chr3D 577150927 577153115 2188 True 4043.000000 4043 100.000000 1 2189 1 chr3D.!!$R2 2188
1 TraesCS3D01G476200 chr3A 712309004 712310580 1576 False 827.000000 1369 91.135000 83 1424 2 chr3A.!!$F2 1341
2 TraesCS3D01G476200 chr3B 768513169 768513956 787 False 876.000000 876 86.994000 1 796 1 chr3B.!!$F1 795
3 TraesCS3D01G476200 chr3B 766830962 766832668 1706 True 673.666667 1266 88.494333 1 1815 3 chr3B.!!$R3 1814

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
126 127 0.811915 CACGACTTCTGGACGAGGAT 59.188 55.0 0.0 0.0 0.0 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2024 2315 0.097674 CAGCTAACCGTGCAAGATGC 59.902 55.0 0.0 0.0 45.29 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 109 5.939447 TCTGATATCATTTGTATGGCCACA 58.061 37.500 8.16 0.00 32.40 4.17
126 127 0.811915 CACGACTTCTGGACGAGGAT 59.188 55.000 0.00 0.00 0.00 3.24
139 140 4.593206 TGGACGAGGATAATATTGCTTCCT 59.407 41.667 13.35 13.35 41.29 3.36
198 201 3.004862 GGTAACACGTTTGAATCGGGAT 58.995 45.455 4.76 0.00 35.55 3.85
213 216 9.854668 TTGAATCGGGATTATTCAATAGGTAAA 57.145 29.630 7.05 0.00 44.39 2.01
214 217 9.854668 TGAATCGGGATTATTCAATAGGTAAAA 57.145 29.630 0.00 0.00 39.70 1.52
250 254 3.056107 CGTACCTTCAAAGAGGATGGTGA 60.056 47.826 10.07 0.00 43.07 4.02
253 265 5.779241 ACCTTCAAAGAGGATGGTGATTA 57.221 39.130 0.00 0.00 42.03 1.75
316 329 3.952628 AACTAGCGGGTGAAGGCGC 62.953 63.158 0.00 0.00 0.00 6.53
322 335 4.980805 GGGTGAAGGCGCACGTCA 62.981 66.667 10.83 10.07 39.66 4.35
394 408 5.474578 AAAAAGGATTTGAAAGAGGGCTC 57.525 39.130 0.00 0.00 39.02 4.70
396 410 2.282900 AGGATTTGAAAGAGGGCTCCT 58.717 47.619 0.00 0.00 36.03 3.69
404 418 3.325753 GAGGGCTCCTGCTGTGGT 61.326 66.667 0.00 0.00 39.59 4.16
406 420 1.307343 AGGGCTCCTGCTGTGGTAT 60.307 57.895 0.00 0.00 39.59 2.73
439 454 1.969208 TGGTGATTCATGCAAAGCCAA 59.031 42.857 0.00 0.00 0.00 4.52
495 514 3.131046 CCTTGTTGCTTCTTTTGTCTGGT 59.869 43.478 0.00 0.00 0.00 4.00
548 568 9.352784 TGTTTTCTTGTTTTGACTAAACTGATG 57.647 29.630 12.61 2.67 45.18 3.07
551 571 4.481930 TGTTTTGACTAAACTGATGCGG 57.518 40.909 12.61 0.00 45.18 5.69
560 580 5.670485 ACTAAACTGATGCGGTCATTGATA 58.330 37.500 0.00 0.00 35.97 2.15
561 581 6.112734 ACTAAACTGATGCGGTCATTGATAA 58.887 36.000 0.00 0.00 35.97 1.75
606 626 4.062991 GGGATAAATAAGATCACGCCGTT 58.937 43.478 0.00 0.00 0.00 4.44
657 678 5.519722 ACCTATTTTGTTCTCTTGTTTGCG 58.480 37.500 0.00 0.00 0.00 4.85
699 720 7.377696 TGTAGTAGACAGGGGAAAAACTTAA 57.622 36.000 0.00 0.00 32.86 1.85
911 952 3.941629 ACTAAGAGGGGCATGGATCTAA 58.058 45.455 0.00 0.00 0.00 2.10
913 954 3.803186 AAGAGGGGCATGGATCTAATG 57.197 47.619 0.00 0.00 0.00 1.90
914 955 2.711174 AGAGGGGCATGGATCTAATGT 58.289 47.619 9.65 0.00 0.00 2.71
915 956 2.374504 AGAGGGGCATGGATCTAATGTG 59.625 50.000 9.65 0.00 0.00 3.21
916 957 2.107204 GAGGGGCATGGATCTAATGTGT 59.893 50.000 9.65 0.00 0.00 3.72
917 958 3.326521 AGGGGCATGGATCTAATGTGTA 58.673 45.455 9.65 0.00 0.00 2.90
994 1045 9.125026 ACTTTATTTGATGGTAGCTTAGGATTG 57.875 33.333 0.00 0.00 0.00 2.67
995 1046 9.342308 CTTTATTTGATGGTAGCTTAGGATTGA 57.658 33.333 0.00 0.00 0.00 2.57
1039 1091 9.935241 TCCAATTAGCTGTTTTTGCATTAATTA 57.065 25.926 0.00 0.00 0.00 1.40
1042 1094 9.632807 AATTAGCTGTTTTTGCATTAATTACGA 57.367 25.926 0.00 0.00 0.00 3.43
1046 1098 7.651704 AGCTGTTTTTGCATTAATTACGACTTT 59.348 29.630 0.00 0.00 0.00 2.66
1051 1103 8.722342 TTTTGCATTAATTACGACTTTCTCAC 57.278 30.769 0.00 0.00 0.00 3.51
1066 1118 9.493206 CGACTTTCTCACTCTTAGTAATTAGTC 57.507 37.037 0.00 0.00 0.00 2.59
1077 1129 9.638176 CTCTTAGTAATTAGTCTACCCCTTGTA 57.362 37.037 0.00 0.00 0.00 2.41
1087 1139 5.724854 AGTCTACCCCTTGTATTTGCTTCTA 59.275 40.000 0.00 0.00 0.00 2.10
1088 1140 5.816258 GTCTACCCCTTGTATTTGCTTCTAC 59.184 44.000 0.00 0.00 0.00 2.59
1089 1141 3.964411 ACCCCTTGTATTTGCTTCTACC 58.036 45.455 0.00 0.00 0.00 3.18
1090 1142 2.943033 CCCCTTGTATTTGCTTCTACCG 59.057 50.000 0.00 0.00 0.00 4.02
1104 1156 3.048337 TCTACCGATGGTTGGTCAAAC 57.952 47.619 0.00 0.00 40.96 2.93
1109 1161 4.145807 ACCGATGGTTGGTCAAACAATAA 58.854 39.130 5.49 0.00 41.89 1.40
1166 1218 5.494724 TGGACTAGTCTTTCTCGTAGCTAA 58.505 41.667 21.88 0.00 0.00 3.09
1257 1524 9.686683 ATATATATGTTAGTGGGAAATGCCTTC 57.313 33.333 0.00 0.00 36.66 3.46
1259 1526 2.039216 TGTTAGTGGGAAATGCCTTCGA 59.961 45.455 0.00 0.00 34.56 3.71
1339 1614 5.578727 GGCTACATAGAATTAAGAGATGCGG 59.421 44.000 0.00 0.00 0.00 5.69
1413 1688 0.804989 GCCAGTTCAGGATTCCAACG 59.195 55.000 5.29 0.00 0.00 4.10
1461 1736 9.765795 AAGACTAATAAAAAGATACTCCATCCG 57.234 33.333 0.00 0.00 33.75 4.18
1462 1737 7.873505 AGACTAATAAAAAGATACTCCATCCGC 59.126 37.037 0.00 0.00 33.75 5.54
1463 1738 6.935208 ACTAATAAAAAGATACTCCATCCGCC 59.065 38.462 0.00 0.00 33.75 6.13
1464 1739 2.640316 AAAAGATACTCCATCCGCCC 57.360 50.000 0.00 0.00 33.75 6.13
1465 1740 0.765510 AAAGATACTCCATCCGCCCC 59.234 55.000 0.00 0.00 33.75 5.80
1466 1741 1.472662 AAGATACTCCATCCGCCCCG 61.473 60.000 0.00 0.00 33.75 5.73
1467 1742 1.906824 GATACTCCATCCGCCCCGA 60.907 63.158 0.00 0.00 0.00 5.14
1468 1743 1.458777 ATACTCCATCCGCCCCGAA 60.459 57.895 0.00 0.00 0.00 4.30
1469 1744 0.836400 ATACTCCATCCGCCCCGAAT 60.836 55.000 0.00 0.00 0.00 3.34
1470 1745 1.469335 TACTCCATCCGCCCCGAATC 61.469 60.000 0.00 0.00 0.00 2.52
1471 1746 3.865929 CTCCATCCGCCCCGAATCG 62.866 68.421 0.00 0.00 0.00 3.34
1473 1748 4.908687 CATCCGCCCCGAATCGCA 62.909 66.667 0.00 0.00 0.00 5.10
1474 1749 4.169696 ATCCGCCCCGAATCGCAA 62.170 61.111 0.00 0.00 0.00 4.85
1475 1750 4.830765 TCCGCCCCGAATCGCAAG 62.831 66.667 0.00 0.00 0.00 4.01
1494 1769 6.732154 CGCAAGAATGGATAGAAATGAATGT 58.268 36.000 0.00 0.00 43.02 2.71
1495 1770 7.864686 CGCAAGAATGGATAGAAATGAATGTA 58.135 34.615 0.00 0.00 43.02 2.29
1496 1771 8.509690 CGCAAGAATGGATAGAAATGAATGTAT 58.490 33.333 0.00 0.00 43.02 2.29
1536 1811 8.341892 ACATCTAGATACATCTATTTCAGCGA 57.658 34.615 4.54 0.00 38.60 4.93
1537 1812 8.240682 ACATCTAGATACATCTATTTCAGCGAC 58.759 37.037 4.54 0.00 38.60 5.19
1538 1813 7.745620 TCTAGATACATCTATTTCAGCGACA 57.254 36.000 0.00 0.00 38.60 4.35
1539 1814 8.166422 TCTAGATACATCTATTTCAGCGACAA 57.834 34.615 0.00 0.00 38.60 3.18
1540 1815 8.630037 TCTAGATACATCTATTTCAGCGACAAA 58.370 33.333 0.00 0.00 38.60 2.83
1541 1816 9.416794 CTAGATACATCTATTTCAGCGACAAAT 57.583 33.333 0.00 0.00 38.60 2.32
1543 1818 9.764363 AGATACATCTATTTCAGCGACAAATAA 57.236 29.630 0.00 0.00 34.85 1.40
1547 1822 9.507280 ACATCTATTTCAGCGACAAATAATTTG 57.493 29.630 0.00 0.00 45.95 2.32
1548 1823 9.720667 CATCTATTTCAGCGACAAATAATTTGA 57.279 29.630 0.00 0.00 43.26 2.69
1553 1828 8.809159 TTTCAGCGACAAATAATTTGAAATGA 57.191 26.923 0.00 0.00 43.26 2.57
1554 1829 8.809159 TTCAGCGACAAATAATTTGAAATGAA 57.191 26.923 0.00 0.00 43.26 2.57
1555 1830 8.451687 TCAGCGACAAATAATTTGAAATGAAG 57.548 30.769 0.00 0.00 43.26 3.02
1556 1831 7.541783 TCAGCGACAAATAATTTGAAATGAAGG 59.458 33.333 0.00 0.00 43.26 3.46
1557 1832 6.813152 AGCGACAAATAATTTGAAATGAAGGG 59.187 34.615 0.00 0.00 43.26 3.95
1558 1833 6.811170 GCGACAAATAATTTGAAATGAAGGGA 59.189 34.615 0.00 0.00 43.26 4.20
1559 1834 7.009540 GCGACAAATAATTTGAAATGAAGGGAG 59.990 37.037 0.00 0.00 43.26 4.30
1560 1835 8.028938 CGACAAATAATTTGAAATGAAGGGAGT 58.971 33.333 0.00 0.00 43.26 3.85
1573 1848 5.174037 TGAAGGGAGTACATTTTACTGGG 57.826 43.478 0.00 0.00 0.00 4.45
1585 1860 3.977134 TTTACTGGGCACGGTTGTATA 57.023 42.857 5.32 0.00 37.41 1.47
1587 1862 2.325583 ACTGGGCACGGTTGTATATG 57.674 50.000 0.00 0.00 30.06 1.78
1589 1864 2.767394 ACTGGGCACGGTTGTATATGTA 59.233 45.455 0.00 0.00 30.06 2.29
1590 1865 3.389983 ACTGGGCACGGTTGTATATGTAT 59.610 43.478 0.00 0.00 30.06 2.29
1591 1866 3.734463 TGGGCACGGTTGTATATGTATG 58.266 45.455 0.00 0.00 0.00 2.39
1592 1867 3.388350 TGGGCACGGTTGTATATGTATGA 59.612 43.478 0.00 0.00 0.00 2.15
1593 1868 4.141688 TGGGCACGGTTGTATATGTATGAA 60.142 41.667 0.00 0.00 0.00 2.57
1649 1940 3.007473 TCCCTAATTAACCTTTGGCCG 57.993 47.619 0.00 0.00 0.00 6.13
1661 1952 2.412870 CTTTGGCCGAAAATGGAAACC 58.587 47.619 6.92 0.00 0.00 3.27
1677 1968 4.837860 TGGAAACCAAGCTCCACAAATAAT 59.162 37.500 0.00 0.00 36.79 1.28
1702 1993 6.551385 ACTTTAGAGTCATCAAGTTTGCTG 57.449 37.500 0.00 0.00 0.00 4.41
1749 2040 7.365741 CCAGAGGTGATGCATACAAAAATATC 58.634 38.462 0.00 0.00 0.00 1.63
1758 2049 8.978874 ATGCATACAAAAATATCTGGACAGTA 57.021 30.769 0.00 0.00 0.00 2.74
1768 2059 2.884320 TCTGGACAGTAACTACCTGCA 58.116 47.619 0.00 0.00 0.00 4.41
1782 2073 9.379791 GTAACTACCTGCACTAAATCAGTAAAT 57.620 33.333 0.00 0.00 34.98 1.40
1783 2074 8.494016 AACTACCTGCACTAAATCAGTAAATC 57.506 34.615 0.00 0.00 34.98 2.17
1794 2085 8.774586 ACTAAATCAGTAAATCGCAACCATATC 58.225 33.333 0.00 0.00 34.98 1.63
1797 2088 7.750229 ATCAGTAAATCGCAACCATATCATT 57.250 32.000 0.00 0.00 0.00 2.57
1809 2100 7.268199 CAACCATATCATTGCATCACTTAGT 57.732 36.000 0.00 0.00 0.00 2.24
1810 2101 7.358066 CAACCATATCATTGCATCACTTAGTC 58.642 38.462 0.00 0.00 0.00 2.59
1811 2102 6.594744 ACCATATCATTGCATCACTTAGTCA 58.405 36.000 0.00 0.00 0.00 3.41
1812 2103 6.484643 ACCATATCATTGCATCACTTAGTCAC 59.515 38.462 0.00 0.00 0.00 3.67
1813 2104 6.709397 CCATATCATTGCATCACTTAGTCACT 59.291 38.462 0.00 0.00 0.00 3.41
1814 2105 7.874528 CCATATCATTGCATCACTTAGTCACTA 59.125 37.037 0.00 0.00 0.00 2.74
1815 2106 9.433153 CATATCATTGCATCACTTAGTCACTAT 57.567 33.333 0.00 0.00 0.00 2.12
1816 2107 7.725818 ATCATTGCATCACTTAGTCACTATG 57.274 36.000 0.00 0.00 0.00 2.23
1817 2108 6.877236 TCATTGCATCACTTAGTCACTATGA 58.123 36.000 4.75 0.00 0.00 2.15
1818 2109 7.330262 TCATTGCATCACTTAGTCACTATGAA 58.670 34.615 4.75 0.00 0.00 2.57
1819 2110 7.989170 TCATTGCATCACTTAGTCACTATGAAT 59.011 33.333 4.75 0.00 0.00 2.57
1820 2111 9.264719 CATTGCATCACTTAGTCACTATGAATA 57.735 33.333 4.75 0.00 0.00 1.75
1821 2112 8.648557 TTGCATCACTTAGTCACTATGAATAC 57.351 34.615 4.75 0.00 0.00 1.89
1822 2113 8.011844 TGCATCACTTAGTCACTATGAATACT 57.988 34.615 4.75 0.00 0.00 2.12
1823 2114 9.131791 TGCATCACTTAGTCACTATGAATACTA 57.868 33.333 4.75 0.00 0.00 1.82
1824 2115 9.967346 GCATCACTTAGTCACTATGAATACTAA 57.033 33.333 4.75 0.00 34.27 2.24
1833 2124 9.862371 AGTCACTATGAATACTAAACTTGTGAG 57.138 33.333 0.00 0.00 32.51 3.51
1834 2125 9.088512 GTCACTATGAATACTAAACTTGTGAGG 57.911 37.037 0.00 0.00 32.51 3.86
1835 2126 9.031537 TCACTATGAATACTAAACTTGTGAGGA 57.968 33.333 0.00 0.00 0.00 3.71
1836 2127 9.823647 CACTATGAATACTAAACTTGTGAGGAT 57.176 33.333 0.00 0.00 0.00 3.24
1840 2131 8.718102 TGAATACTAAACTTGTGAGGATAAGC 57.282 34.615 0.00 0.00 0.00 3.09
1841 2132 8.318412 TGAATACTAAACTTGTGAGGATAAGCA 58.682 33.333 0.00 0.00 0.00 3.91
1842 2133 9.162764 GAATACTAAACTTGTGAGGATAAGCAA 57.837 33.333 0.00 0.00 0.00 3.91
1843 2134 9.515226 AATACTAAACTTGTGAGGATAAGCAAA 57.485 29.630 0.00 0.00 0.00 3.68
1844 2135 7.203255 ACTAAACTTGTGAGGATAAGCAAAC 57.797 36.000 0.00 0.00 0.00 2.93
1845 2136 5.453567 AAACTTGTGAGGATAAGCAAACC 57.546 39.130 0.00 0.00 0.00 3.27
1846 2137 4.098914 ACTTGTGAGGATAAGCAAACCA 57.901 40.909 0.00 0.00 0.00 3.67
1847 2138 4.666512 ACTTGTGAGGATAAGCAAACCAT 58.333 39.130 0.00 0.00 0.00 3.55
1848 2139 5.079643 ACTTGTGAGGATAAGCAAACCATT 58.920 37.500 0.00 0.00 0.00 3.16
1849 2140 5.539955 ACTTGTGAGGATAAGCAAACCATTT 59.460 36.000 0.00 0.00 0.00 2.32
1850 2141 5.643379 TGTGAGGATAAGCAAACCATTTC 57.357 39.130 0.00 0.00 0.00 2.17
1851 2142 5.076182 TGTGAGGATAAGCAAACCATTTCA 58.924 37.500 0.00 0.00 0.00 2.69
1852 2143 5.538053 TGTGAGGATAAGCAAACCATTTCAA 59.462 36.000 0.00 0.00 0.00 2.69
1853 2144 6.041409 TGTGAGGATAAGCAAACCATTTCAAA 59.959 34.615 0.00 0.00 0.00 2.69
1854 2145 6.928492 GTGAGGATAAGCAAACCATTTCAAAA 59.072 34.615 0.00 0.00 0.00 2.44
1855 2146 6.928492 TGAGGATAAGCAAACCATTTCAAAAC 59.072 34.615 0.00 0.00 0.00 2.43
1856 2147 5.925969 AGGATAAGCAAACCATTTCAAAACG 59.074 36.000 0.00 0.00 0.00 3.60
1857 2148 5.923684 GGATAAGCAAACCATTTCAAAACGA 59.076 36.000 0.00 0.00 0.00 3.85
1858 2149 6.589907 GGATAAGCAAACCATTTCAAAACGAT 59.410 34.615 0.00 0.00 0.00 3.73
1859 2150 7.757624 GGATAAGCAAACCATTTCAAAACGATA 59.242 33.333 0.00 0.00 0.00 2.92
1860 2151 9.301153 GATAAGCAAACCATTTCAAAACGATAT 57.699 29.630 0.00 0.00 0.00 1.63
1861 2152 7.961325 AAGCAAACCATTTCAAAACGATATT 57.039 28.000 0.00 0.00 0.00 1.28
1862 2153 7.961325 AGCAAACCATTTCAAAACGATATTT 57.039 28.000 0.00 0.00 0.00 1.40
1863 2154 7.795859 AGCAAACCATTTCAAAACGATATTTG 58.204 30.769 0.00 0.00 40.78 2.32
1864 2155 6.519419 GCAAACCATTTCAAAACGATATTTGC 59.481 34.615 0.00 0.00 39.57 3.68
1865 2156 7.571026 CAAACCATTTCAAAACGATATTTGCA 58.429 30.769 0.00 0.00 39.57 4.08
1866 2157 7.721286 AACCATTTCAAAACGATATTTGCAA 57.279 28.000 0.00 0.00 39.57 4.08
1867 2158 7.116061 ACCATTTCAAAACGATATTTGCAAC 57.884 32.000 0.00 0.00 39.57 4.17
1868 2159 6.703607 ACCATTTCAAAACGATATTTGCAACA 59.296 30.769 0.00 0.00 39.57 3.33
1869 2160 7.225538 ACCATTTCAAAACGATATTTGCAACAA 59.774 29.630 0.00 0.00 39.57 2.83
1870 2161 8.066595 CCATTTCAAAACGATATTTGCAACAAA 58.933 29.630 0.00 0.00 39.57 2.83
1871 2162 9.596677 CATTTCAAAACGATATTTGCAACAAAT 57.403 25.926 0.00 10.16 39.57 2.32
1874 2165 7.933560 TCAAAACGATATTTGCAACAAATACG 58.066 30.769 20.50 20.50 39.57 3.06
1875 2166 7.803659 TCAAAACGATATTTGCAACAAATACGA 59.196 29.630 24.61 8.37 39.57 3.43
1876 2167 8.582930 CAAAACGATATTTGCAACAAATACGAT 58.417 29.630 24.61 17.42 33.90 3.73
1877 2168 8.682128 AAACGATATTTGCAACAAATACGATT 57.318 26.923 24.61 20.10 0.00 3.34
1878 2169 7.663630 ACGATATTTGCAACAAATACGATTG 57.336 32.000 24.61 14.89 36.37 2.67
1879 2170 7.468441 ACGATATTTGCAACAAATACGATTGA 58.532 30.769 24.61 6.85 34.38 2.57
1880 2171 8.128582 ACGATATTTGCAACAAATACGATTGAT 58.871 29.630 24.61 10.02 34.38 2.57
1881 2172 8.621487 CGATATTTGCAACAAATACGATTGATC 58.379 33.333 13.39 7.10 34.38 2.92
1882 2173 9.449550 GATATTTGCAACAAATACGATTGATCA 57.550 29.630 13.39 0.00 34.38 2.92
1883 2174 9.970395 ATATTTGCAACAAATACGATTGATCAT 57.030 25.926 13.39 0.00 34.38 2.45
1884 2175 7.509050 TTTGCAACAAATACGATTGATCATG 57.491 32.000 0.00 0.00 34.38 3.07
1885 2176 5.036090 TGCAACAAATACGATTGATCATGC 58.964 37.500 0.00 0.00 34.38 4.06
1886 2177 5.163632 TGCAACAAATACGATTGATCATGCT 60.164 36.000 0.00 0.00 34.10 3.79
1887 2178 5.745294 GCAACAAATACGATTGATCATGCTT 59.255 36.000 0.00 0.00 34.38 3.91
1888 2179 6.291427 GCAACAAATACGATTGATCATGCTTG 60.291 38.462 0.00 0.00 34.38 4.01
1889 2180 5.276270 ACAAATACGATTGATCATGCTTGC 58.724 37.500 0.00 0.00 34.38 4.01
1890 2181 5.066893 ACAAATACGATTGATCATGCTTGCT 59.933 36.000 0.00 0.00 34.38 3.91
1891 2182 6.260714 ACAAATACGATTGATCATGCTTGCTA 59.739 34.615 0.00 0.00 34.38 3.49
1892 2183 6.866010 AATACGATTGATCATGCTTGCTAA 57.134 33.333 0.00 0.00 0.00 3.09
1893 2184 6.866010 ATACGATTGATCATGCTTGCTAAA 57.134 33.333 0.00 0.00 0.00 1.85
1894 2185 4.913376 ACGATTGATCATGCTTGCTAAAC 58.087 39.130 0.00 0.00 0.00 2.01
1895 2186 3.964347 CGATTGATCATGCTTGCTAAACG 59.036 43.478 0.00 0.00 0.00 3.60
1896 2187 3.763097 TTGATCATGCTTGCTAAACGG 57.237 42.857 0.00 0.00 0.00 4.44
1897 2188 2.984562 TGATCATGCTTGCTAAACGGA 58.015 42.857 0.00 0.00 0.00 4.69
1898 2189 3.342719 TGATCATGCTTGCTAAACGGAA 58.657 40.909 0.00 0.00 0.00 4.30
1899 2190 3.755905 TGATCATGCTTGCTAAACGGAAA 59.244 39.130 0.00 0.00 0.00 3.13
1900 2191 3.829886 TCATGCTTGCTAAACGGAAAG 57.170 42.857 0.00 0.00 0.00 2.62
1901 2192 3.146066 TCATGCTTGCTAAACGGAAAGT 58.854 40.909 0.00 0.00 0.00 2.66
1902 2193 3.058293 TCATGCTTGCTAAACGGAAAGTG 60.058 43.478 0.00 0.00 0.00 3.16
1903 2194 2.294074 TGCTTGCTAAACGGAAAGTGT 58.706 42.857 0.00 0.00 0.00 3.55
1904 2195 2.032799 TGCTTGCTAAACGGAAAGTGTG 59.967 45.455 0.00 0.00 0.00 3.82
1905 2196 2.604614 GCTTGCTAAACGGAAAGTGTGG 60.605 50.000 0.00 0.00 0.00 4.17
1906 2197 1.600023 TGCTAAACGGAAAGTGTGGG 58.400 50.000 0.00 0.00 0.00 4.61
1907 2198 0.879090 GCTAAACGGAAAGTGTGGGG 59.121 55.000 0.00 0.00 0.00 4.96
1908 2199 1.543871 GCTAAACGGAAAGTGTGGGGA 60.544 52.381 0.00 0.00 0.00 4.81
1909 2200 2.423577 CTAAACGGAAAGTGTGGGGAG 58.576 52.381 0.00 0.00 0.00 4.30
1910 2201 0.549469 AAACGGAAAGTGTGGGGAGT 59.451 50.000 0.00 0.00 0.00 3.85
1911 2202 1.426751 AACGGAAAGTGTGGGGAGTA 58.573 50.000 0.00 0.00 0.00 2.59
1912 2203 1.652947 ACGGAAAGTGTGGGGAGTAT 58.347 50.000 0.00 0.00 0.00 2.12
1913 2204 1.982958 ACGGAAAGTGTGGGGAGTATT 59.017 47.619 0.00 0.00 0.00 1.89
1914 2205 2.027469 ACGGAAAGTGTGGGGAGTATTC 60.027 50.000 0.00 0.00 0.00 1.75
1915 2206 2.027561 CGGAAAGTGTGGGGAGTATTCA 60.028 50.000 0.00 0.00 0.00 2.57
1916 2207 3.558321 CGGAAAGTGTGGGGAGTATTCAA 60.558 47.826 0.00 0.00 0.00 2.69
1917 2208 4.010349 GGAAAGTGTGGGGAGTATTCAAG 58.990 47.826 0.00 0.00 0.00 3.02
1918 2209 4.263331 GGAAAGTGTGGGGAGTATTCAAGA 60.263 45.833 0.00 0.00 0.00 3.02
1919 2210 4.993705 AAGTGTGGGGAGTATTCAAGAA 57.006 40.909 0.00 0.00 0.00 2.52
1920 2211 5.520748 AAGTGTGGGGAGTATTCAAGAAT 57.479 39.130 0.52 0.52 34.93 2.40
1921 2212 4.848357 AGTGTGGGGAGTATTCAAGAATG 58.152 43.478 5.59 0.00 32.50 2.67
1922 2213 4.289672 AGTGTGGGGAGTATTCAAGAATGT 59.710 41.667 5.59 0.00 32.50 2.71
1923 2214 5.487488 AGTGTGGGGAGTATTCAAGAATGTA 59.513 40.000 5.59 0.00 32.50 2.29
1924 2215 6.158695 AGTGTGGGGAGTATTCAAGAATGTAT 59.841 38.462 5.59 0.00 32.50 2.29
1925 2216 6.828785 GTGTGGGGAGTATTCAAGAATGTATT 59.171 38.462 5.59 0.00 32.50 1.89
1926 2217 7.339466 GTGTGGGGAGTATTCAAGAATGTATTT 59.661 37.037 5.59 0.00 32.50 1.40
1927 2218 7.893302 TGTGGGGAGTATTCAAGAATGTATTTT 59.107 33.333 5.59 0.00 32.50 1.82
1928 2219 9.403583 GTGGGGAGTATTCAAGAATGTATTTTA 57.596 33.333 5.59 0.00 32.50 1.52
1929 2220 9.983024 TGGGGAGTATTCAAGAATGTATTTTAA 57.017 29.630 5.59 0.00 32.50 1.52
1974 2265 6.935741 AAATTATGTACGTACATGGCATGT 57.064 33.333 38.87 33.18 45.77 3.21
1975 2266 9.713713 ATAAATTATGTACGTACATGGCATGTA 57.286 29.630 38.87 31.06 45.77 2.29
1983 2274 2.877097 ACATGGCATGTACAGTGGAA 57.123 45.000 30.56 0.00 42.78 3.53
1984 2275 3.370840 ACATGGCATGTACAGTGGAAT 57.629 42.857 30.56 2.56 42.78 3.01
1985 2276 3.700538 ACATGGCATGTACAGTGGAATT 58.299 40.909 30.56 2.00 42.78 2.17
1986 2277 4.854173 ACATGGCATGTACAGTGGAATTA 58.146 39.130 30.56 0.00 42.78 1.40
1987 2278 5.260424 ACATGGCATGTACAGTGGAATTAA 58.740 37.500 30.56 0.00 42.78 1.40
1988 2279 5.357878 ACATGGCATGTACAGTGGAATTAAG 59.642 40.000 30.56 0.00 42.78 1.85
1989 2280 5.172687 TGGCATGTACAGTGGAATTAAGA 57.827 39.130 0.33 0.00 0.00 2.10
1990 2281 5.185454 TGGCATGTACAGTGGAATTAAGAG 58.815 41.667 0.33 0.00 0.00 2.85
1991 2282 5.186198 GGCATGTACAGTGGAATTAAGAGT 58.814 41.667 0.33 0.00 0.00 3.24
1992 2283 5.065218 GGCATGTACAGTGGAATTAAGAGTG 59.935 44.000 0.33 0.00 0.00 3.51
1993 2284 5.643777 GCATGTACAGTGGAATTAAGAGTGT 59.356 40.000 0.33 0.00 0.00 3.55
1994 2285 6.149474 GCATGTACAGTGGAATTAAGAGTGTT 59.851 38.462 0.33 0.00 0.00 3.32
1995 2286 7.333423 GCATGTACAGTGGAATTAAGAGTGTTA 59.667 37.037 0.33 0.00 0.00 2.41
1996 2287 8.656849 CATGTACAGTGGAATTAAGAGTGTTAC 58.343 37.037 0.33 0.00 0.00 2.50
1997 2288 7.959175 TGTACAGTGGAATTAAGAGTGTTACT 58.041 34.615 0.00 0.00 0.00 2.24
1998 2289 8.086522 TGTACAGTGGAATTAAGAGTGTTACTC 58.913 37.037 0.00 0.79 45.38 2.59
2013 2304 8.874744 GAGTGTTACTCTCAAAGAAAACTAGT 57.125 34.615 9.25 0.00 41.88 2.57
2014 2305 9.962783 GAGTGTTACTCTCAAAGAAAACTAGTA 57.037 33.333 9.25 0.00 41.88 1.82
2017 2308 9.706691 TGTTACTCTCAAAGAAAACTAGTATGG 57.293 33.333 0.00 0.00 0.00 2.74
2018 2309 9.924650 GTTACTCTCAAAGAAAACTAGTATGGA 57.075 33.333 0.00 0.00 0.00 3.41
2025 2316 9.120538 TCAAAGAAAACTAGTATGGATATTGGC 57.879 33.333 0.00 0.00 0.00 4.52
2026 2317 8.902806 CAAAGAAAACTAGTATGGATATTGGCA 58.097 33.333 0.00 0.00 0.00 4.92
2027 2318 9.646522 AAAGAAAACTAGTATGGATATTGGCAT 57.353 29.630 0.00 0.00 0.00 4.40
2028 2319 8.854614 AGAAAACTAGTATGGATATTGGCATC 57.145 34.615 0.00 0.00 0.00 3.91
2029 2320 8.664079 AGAAAACTAGTATGGATATTGGCATCT 58.336 33.333 0.00 0.00 0.00 2.90
2030 2321 9.289782 GAAAACTAGTATGGATATTGGCATCTT 57.710 33.333 0.00 0.00 0.00 2.40
2031 2322 8.627208 AAACTAGTATGGATATTGGCATCTTG 57.373 34.615 0.00 0.00 0.00 3.02
2032 2323 6.176183 ACTAGTATGGATATTGGCATCTTGC 58.824 40.000 0.00 0.00 44.08 4.01
2042 2333 2.471255 GCATCTTGCACGGTTAGCT 58.529 52.632 0.00 0.00 44.26 3.32
2043 2334 0.097674 GCATCTTGCACGGTTAGCTG 59.902 55.000 0.00 0.00 44.26 4.24
2044 2335 1.725641 CATCTTGCACGGTTAGCTGA 58.274 50.000 0.00 0.00 0.00 4.26
2045 2336 2.076100 CATCTTGCACGGTTAGCTGAA 58.924 47.619 0.00 0.00 0.00 3.02
2046 2337 2.472695 TCTTGCACGGTTAGCTGAAT 57.527 45.000 0.00 0.00 0.00 2.57
2047 2338 3.603158 TCTTGCACGGTTAGCTGAATA 57.397 42.857 0.00 0.00 0.00 1.75
2048 2339 3.259064 TCTTGCACGGTTAGCTGAATAC 58.741 45.455 0.00 0.00 0.00 1.89
2049 2340 2.753055 TGCACGGTTAGCTGAATACA 57.247 45.000 0.00 0.00 0.00 2.29
2050 2341 3.046968 TGCACGGTTAGCTGAATACAA 57.953 42.857 0.00 0.00 0.00 2.41
2051 2342 3.403968 TGCACGGTTAGCTGAATACAAA 58.596 40.909 0.00 0.00 0.00 2.83
2052 2343 3.187637 TGCACGGTTAGCTGAATACAAAC 59.812 43.478 0.00 0.00 0.00 2.93
2053 2344 3.425758 GCACGGTTAGCTGAATACAAACC 60.426 47.826 0.00 0.00 36.95 3.27
2056 2347 3.602483 GGTTAGCTGAATACAAACCGGA 58.398 45.455 9.46 0.00 31.09 5.14
2057 2348 3.621715 GGTTAGCTGAATACAAACCGGAG 59.378 47.826 9.46 0.00 31.09 4.63
2070 2361 2.837291 CGGAGGGAGGAGCTCAGG 60.837 72.222 17.19 0.00 31.08 3.86
2071 2362 3.160748 GGAGGGAGGAGCTCAGGC 61.161 72.222 17.19 3.52 39.06 4.85
2072 2363 3.160748 GAGGGAGGAGCTCAGGCC 61.161 72.222 17.19 12.76 39.73 5.19
2073 2364 3.693572 AGGGAGGAGCTCAGGCCT 61.694 66.667 17.19 0.00 39.73 5.19
2076 2367 3.535962 GAGGAGCTCAGGCCTCGG 61.536 72.222 17.19 0.00 41.10 4.63
2097 2388 2.186903 CGGAGCACCACCGCTATT 59.813 61.111 0.00 0.00 44.01 1.73
2098 2389 2.173669 CGGAGCACCACCGCTATTG 61.174 63.158 0.00 0.00 44.01 1.90
2099 2390 1.078426 GGAGCACCACCGCTATTGT 60.078 57.895 0.00 0.00 44.01 2.71
2100 2391 1.090052 GGAGCACCACCGCTATTGTC 61.090 60.000 0.00 0.00 44.01 3.18
2101 2392 1.421410 GAGCACCACCGCTATTGTCG 61.421 60.000 0.00 0.00 44.01 4.35
2102 2393 1.740296 GCACCACCGCTATTGTCGT 60.740 57.895 0.00 0.00 0.00 4.34
2103 2394 1.693083 GCACCACCGCTATTGTCGTC 61.693 60.000 0.00 0.00 0.00 4.20
2104 2395 0.389296 CACCACCGCTATTGTCGTCA 60.389 55.000 0.00 0.00 0.00 4.35
2105 2396 0.535335 ACCACCGCTATTGTCGTCAT 59.465 50.000 0.00 0.00 0.00 3.06
2106 2397 1.209128 CCACCGCTATTGTCGTCATC 58.791 55.000 0.00 0.00 0.00 2.92
2107 2398 1.202417 CCACCGCTATTGTCGTCATCT 60.202 52.381 0.00 0.00 0.00 2.90
2108 2399 2.120232 CACCGCTATTGTCGTCATCTC 58.880 52.381 0.00 0.00 0.00 2.75
2109 2400 1.067212 ACCGCTATTGTCGTCATCTCC 59.933 52.381 0.00 0.00 0.00 3.71
2110 2401 1.067060 CCGCTATTGTCGTCATCTCCA 59.933 52.381 0.00 0.00 0.00 3.86
2111 2402 2.120232 CGCTATTGTCGTCATCTCCAC 58.880 52.381 0.00 0.00 0.00 4.02
2112 2403 2.120232 GCTATTGTCGTCATCTCCACG 58.880 52.381 0.00 0.00 38.67 4.94
2113 2404 2.120232 CTATTGTCGTCATCTCCACGC 58.880 52.381 0.00 0.00 37.18 5.34
2114 2405 0.532573 ATTGTCGTCATCTCCACGCT 59.467 50.000 0.00 0.00 37.18 5.07
2115 2406 0.109272 TTGTCGTCATCTCCACGCTC 60.109 55.000 0.00 0.00 37.18 5.03
2116 2407 1.226717 GTCGTCATCTCCACGCTCC 60.227 63.158 0.00 0.00 37.18 4.70
2117 2408 2.105128 CGTCATCTCCACGCTCCC 59.895 66.667 0.00 0.00 0.00 4.30
2118 2409 2.105128 GTCATCTCCACGCTCCCG 59.895 66.667 0.00 0.00 41.14 5.14
2119 2410 3.147595 TCATCTCCACGCTCCCGG 61.148 66.667 0.00 0.00 39.22 5.73
2120 2411 4.899239 CATCTCCACGCTCCCGGC 62.899 72.222 0.00 0.00 39.22 6.13
2148 2439 3.461773 GCAGGACGCTCCCAGCTA 61.462 66.667 0.00 0.00 39.60 3.32
2149 2440 2.496817 CAGGACGCTCCCAGCTAC 59.503 66.667 0.00 0.00 39.60 3.58
2150 2441 3.141488 AGGACGCTCCCAGCTACG 61.141 66.667 0.00 0.00 39.60 3.51
2151 2442 4.208686 GGACGCTCCCAGCTACGG 62.209 72.222 0.00 0.00 39.60 4.02
2152 2443 3.450115 GACGCTCCCAGCTACGGT 61.450 66.667 0.00 0.00 39.60 4.83
2153 2444 3.701604 GACGCTCCCAGCTACGGTG 62.702 68.421 0.00 0.00 39.60 4.94
2159 2450 2.499685 CCAGCTACGGTGGTAGGC 59.500 66.667 4.01 0.00 45.06 3.93
2160 2451 2.104331 CAGCTACGGTGGTAGGCG 59.896 66.667 3.70 0.00 45.15 5.52
2161 2452 2.044650 AGCTACGGTGGTAGGCGA 60.045 61.111 3.70 0.00 45.15 5.54
2162 2453 2.103736 GCTACGGTGGTAGGCGAC 59.896 66.667 3.70 0.00 45.15 5.19
2163 2454 2.703798 GCTACGGTGGTAGGCGACA 61.704 63.158 0.00 0.00 45.15 4.35
2164 2455 1.432251 CTACGGTGGTAGGCGACAG 59.568 63.158 0.00 0.00 42.02 3.51
2165 2456 1.002257 TACGGTGGTAGGCGACAGA 60.002 57.895 0.00 0.00 0.00 3.41
2166 2457 1.308069 TACGGTGGTAGGCGACAGAC 61.308 60.000 0.00 0.00 0.00 3.51
2167 2458 2.577593 GGTGGTAGGCGACAGACC 59.422 66.667 5.42 5.42 38.68 3.85
2168 2459 2.181021 GTGGTAGGCGACAGACCG 59.819 66.667 7.78 0.00 40.52 4.79
2169 2460 3.066190 TGGTAGGCGACAGACCGG 61.066 66.667 0.00 0.00 40.52 5.28
2170 2461 3.834799 GGTAGGCGACAGACCGGG 61.835 72.222 6.32 0.00 0.00 5.73
2171 2462 3.066814 GTAGGCGACAGACCGGGT 61.067 66.667 6.32 0.00 0.00 5.28
2172 2463 3.066190 TAGGCGACAGACCGGGTG 61.066 66.667 3.30 5.29 0.00 4.61
2175 2466 4.436998 GCGACAGACCGGGTGGAG 62.437 72.222 3.30 2.63 39.21 3.86
2176 2467 4.436998 CGACAGACCGGGTGGAGC 62.437 72.222 3.30 0.00 39.21 4.70
2177 2468 4.083862 GACAGACCGGGTGGAGCC 62.084 72.222 3.30 0.00 39.21 4.70
2178 2469 4.640690 ACAGACCGGGTGGAGCCT 62.641 66.667 3.30 0.00 39.21 4.58
2179 2470 4.087892 CAGACCGGGTGGAGCCTG 62.088 72.222 3.30 0.72 43.41 4.85
2184 2475 4.087892 CGGGTGGAGCCTGGTGAG 62.088 72.222 0.00 0.00 40.02 3.51
2185 2476 3.721706 GGGTGGAGCCTGGTGAGG 61.722 72.222 0.00 0.00 43.19 3.86
2186 2477 2.607750 GGTGGAGCCTGGTGAGGA 60.608 66.667 0.00 0.00 42.93 3.71
2187 2478 1.997874 GGTGGAGCCTGGTGAGGAT 60.998 63.158 0.00 0.00 42.28 3.24
2188 2479 1.222936 GTGGAGCCTGGTGAGGATG 59.777 63.158 0.00 0.00 38.46 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.399644 TCAAAGACCCCCTAAATCCAACA 59.600 43.478 0.00 0.00 0.00 3.33
108 109 2.414994 TATCCTCGTCCAGAAGTCGT 57.585 50.000 0.00 0.00 0.00 4.34
213 216 9.762933 TTTGAAGGTACGTACACTACTAAATTT 57.237 29.630 26.02 0.00 0.00 1.82
214 217 9.415544 CTTTGAAGGTACGTACACTACTAAATT 57.584 33.333 26.02 6.98 0.00 1.82
219 222 5.182760 CCTCTTTGAAGGTACGTACACTACT 59.817 44.000 26.02 11.72 0.00 2.57
260 272 6.316390 GTGCTAACATAAGCTTAACTGGATGT 59.684 38.462 10.85 7.35 43.19 3.06
413 427 5.039333 GCTTTGCATGAATCACCAGATAAC 58.961 41.667 0.00 0.00 33.08 1.89
466 485 1.152830 GAAGCAACAAGGACCCCCA 59.847 57.895 0.00 0.00 33.88 4.96
548 568 5.751243 ACCTTATGTTTATCAATGACCGC 57.249 39.130 0.00 0.00 0.00 5.68
560 580 8.881262 CCCTCCTATCTATGTAACCTTATGTTT 58.119 37.037 0.00 0.00 38.42 2.83
561 581 8.239478 TCCCTCCTATCTATGTAACCTTATGTT 58.761 37.037 0.00 0.00 41.11 2.71
576 596 7.147811 GCGTGATCTTATTTATCCCTCCTATCT 60.148 40.741 0.00 0.00 0.00 1.98
606 626 1.077357 ACCAACAACGGGCACAAGA 60.077 52.632 0.00 0.00 0.00 3.02
636 656 7.678194 TTTCGCAAACAAGAGAACAAAATAG 57.322 32.000 0.00 0.00 0.00 1.73
695 716 7.335422 ACATACTTTGAAGCCTCTCACATTAAG 59.665 37.037 0.00 0.00 0.00 1.85
699 720 5.171339 ACATACTTTGAAGCCTCTCACAT 57.829 39.130 0.00 0.00 0.00 3.21
787 808 2.238144 ACATTACATCTGCACCTCTGCT 59.762 45.455 0.00 0.00 44.57 4.24
861 899 3.055385 TCAGACCACCTATACCTTTGCAC 60.055 47.826 0.00 0.00 0.00 4.57
1039 1091 9.012161 ACTAATTACTAAGAGTGAGAAAGTCGT 57.988 33.333 0.00 0.00 33.01 4.34
1046 1098 7.997803 GGGGTAGACTAATTACTAAGAGTGAGA 59.002 40.741 0.00 0.00 0.00 3.27
1051 1103 8.536340 ACAAGGGGTAGACTAATTACTAAGAG 57.464 38.462 0.00 0.00 0.00 2.85
1066 1118 5.123936 GGTAGAAGCAAATACAAGGGGTAG 58.876 45.833 0.00 0.00 34.92 3.18
1077 1129 3.016736 CCAACCATCGGTAGAAGCAAAT 58.983 45.455 0.00 0.00 33.12 2.32
1087 1139 2.060050 TTGTTTGACCAACCATCGGT 57.940 45.000 0.00 0.00 40.30 4.69
1088 1140 4.775058 TTATTGTTTGACCAACCATCGG 57.225 40.909 0.00 0.00 33.97 4.18
1089 1141 7.170658 ACATTTTTATTGTTTGACCAACCATCG 59.829 33.333 0.00 0.00 33.97 3.84
1090 1142 8.376889 ACATTTTTATTGTTTGACCAACCATC 57.623 30.769 0.00 0.00 33.97 3.51
1120 1172 9.473007 TCCAATCCATAATGATGTACTGAAAAA 57.527 29.630 0.00 0.00 0.00 1.94
1124 1176 7.379059 AGTCCAATCCATAATGATGTACTGA 57.621 36.000 0.00 0.00 0.00 3.41
1257 1524 3.687698 ACCCTTTGGTCATAAACGAATCG 59.312 43.478 0.00 0.00 43.06 3.34
1259 1526 6.887545 TCATTACCCTTTGGTCATAAACGAAT 59.112 34.615 0.00 0.00 43.06 3.34
1306 1573 7.764443 TCTTAATTCTATGTAGCCAACACTCAC 59.236 37.037 0.00 0.00 42.09 3.51
1393 1668 0.804989 GTTGGAATCCTGAACTGGCG 59.195 55.000 0.00 0.00 0.00 5.69
1454 1729 3.923864 CGATTCGGGGCGGATGGA 61.924 66.667 0.00 0.00 0.00 3.41
1456 1731 4.908687 TGCGATTCGGGGCGGATG 62.909 66.667 8.34 0.00 0.00 3.51
1457 1732 4.169696 TTGCGATTCGGGGCGGAT 62.170 61.111 8.34 0.00 0.00 4.18
1458 1733 4.830765 CTTGCGATTCGGGGCGGA 62.831 66.667 8.34 0.00 0.00 5.54
1459 1734 4.830765 TCTTGCGATTCGGGGCGG 62.831 66.667 8.34 0.00 0.00 6.13
1460 1735 2.180204 ATTCTTGCGATTCGGGGCG 61.180 57.895 8.34 0.00 0.00 6.13
1461 1736 1.356624 CATTCTTGCGATTCGGGGC 59.643 57.895 8.34 0.00 0.00 5.80
1462 1737 0.463654 TCCATTCTTGCGATTCGGGG 60.464 55.000 8.34 0.00 0.00 5.73
1463 1738 1.597742 ATCCATTCTTGCGATTCGGG 58.402 50.000 8.34 0.00 0.00 5.14
1464 1739 3.653344 TCTATCCATTCTTGCGATTCGG 58.347 45.455 8.34 0.00 0.00 4.30
1465 1740 5.657470 TTTCTATCCATTCTTGCGATTCG 57.343 39.130 0.62 0.62 0.00 3.34
1466 1741 7.194607 TCATTTCTATCCATTCTTGCGATTC 57.805 36.000 0.00 0.00 0.00 2.52
1467 1742 7.572523 TTCATTTCTATCCATTCTTGCGATT 57.427 32.000 0.00 0.00 0.00 3.34
1468 1743 7.230108 ACATTCATTTCTATCCATTCTTGCGAT 59.770 33.333 0.00 0.00 0.00 4.58
1469 1744 6.543465 ACATTCATTTCTATCCATTCTTGCGA 59.457 34.615 0.00 0.00 0.00 5.10
1470 1745 6.732154 ACATTCATTTCTATCCATTCTTGCG 58.268 36.000 0.00 0.00 0.00 4.85
1510 1785 9.449719 TCGCTGAAATAGATGTATCTAGATGTA 57.550 33.333 15.79 4.44 42.20 2.29
1511 1786 8.240682 GTCGCTGAAATAGATGTATCTAGATGT 58.759 37.037 15.79 1.25 42.20 3.06
1512 1787 8.239998 TGTCGCTGAAATAGATGTATCTAGATG 58.760 37.037 15.79 0.00 42.20 2.90
1513 1788 8.341892 TGTCGCTGAAATAGATGTATCTAGAT 57.658 34.615 10.73 10.73 42.20 1.98
1514 1789 7.745620 TGTCGCTGAAATAGATGTATCTAGA 57.254 36.000 7.57 0.00 42.20 2.43
1515 1790 8.803201 TTTGTCGCTGAAATAGATGTATCTAG 57.197 34.615 7.57 0.00 42.20 2.43
1517 1792 9.764363 TTATTTGTCGCTGAAATAGATGTATCT 57.236 29.630 0.00 0.00 40.86 1.98
1521 1796 9.507280 CAAATTATTTGTCGCTGAAATAGATGT 57.493 29.630 9.33 0.00 35.94 3.06
1522 1797 9.720667 TCAAATTATTTGTCGCTGAAATAGATG 57.279 29.630 16.06 0.00 41.36 2.90
1527 1802 9.421806 TCATTTCAAATTATTTGTCGCTGAAAT 57.578 25.926 16.06 11.04 40.72 2.17
1528 1803 8.809159 TCATTTCAAATTATTTGTCGCTGAAA 57.191 26.923 16.06 9.43 41.36 2.69
1529 1804 8.809159 TTCATTTCAAATTATTTGTCGCTGAA 57.191 26.923 16.06 15.88 41.36 3.02
1530 1805 7.541783 CCTTCATTTCAAATTATTTGTCGCTGA 59.458 33.333 16.06 12.01 41.36 4.26
1531 1806 7.201461 CCCTTCATTTCAAATTATTTGTCGCTG 60.201 37.037 16.06 10.32 41.36 5.18
1532 1807 6.813152 CCCTTCATTTCAAATTATTTGTCGCT 59.187 34.615 16.06 0.00 41.36 4.93
1533 1808 6.811170 TCCCTTCATTTCAAATTATTTGTCGC 59.189 34.615 16.06 0.00 41.36 5.19
1534 1809 8.028938 ACTCCCTTCATTTCAAATTATTTGTCG 58.971 33.333 16.06 5.22 41.36 4.35
1544 1819 9.362151 AGTAAAATGTACTCCCTTCATTTCAAA 57.638 29.630 0.00 0.00 39.72 2.69
1545 1820 8.792633 CAGTAAAATGTACTCCCTTCATTTCAA 58.207 33.333 0.00 0.00 39.72 2.69
1546 1821 7.393234 CCAGTAAAATGTACTCCCTTCATTTCA 59.607 37.037 0.00 0.00 39.72 2.69
1547 1822 7.148069 CCCAGTAAAATGTACTCCCTTCATTTC 60.148 40.741 0.00 0.00 39.72 2.17
1548 1823 6.663523 CCCAGTAAAATGTACTCCCTTCATTT 59.336 38.462 0.00 0.00 41.51 2.32
1549 1824 6.187682 CCCAGTAAAATGTACTCCCTTCATT 58.812 40.000 0.00 0.00 33.94 2.57
1550 1825 5.755849 CCCAGTAAAATGTACTCCCTTCAT 58.244 41.667 0.00 0.00 0.00 2.57
1551 1826 4.566907 GCCCAGTAAAATGTACTCCCTTCA 60.567 45.833 0.00 0.00 0.00 3.02
1552 1827 3.945921 GCCCAGTAAAATGTACTCCCTTC 59.054 47.826 0.00 0.00 0.00 3.46
1553 1828 3.332485 TGCCCAGTAAAATGTACTCCCTT 59.668 43.478 0.00 0.00 0.00 3.95
1554 1829 2.916934 TGCCCAGTAAAATGTACTCCCT 59.083 45.455 0.00 0.00 0.00 4.20
1555 1830 3.014623 GTGCCCAGTAAAATGTACTCCC 58.985 50.000 0.00 0.00 0.00 4.30
1556 1831 2.676342 CGTGCCCAGTAAAATGTACTCC 59.324 50.000 0.00 0.00 0.00 3.85
1557 1832 2.676342 CCGTGCCCAGTAAAATGTACTC 59.324 50.000 0.00 0.00 0.00 2.59
1558 1833 2.039348 ACCGTGCCCAGTAAAATGTACT 59.961 45.455 0.00 0.00 0.00 2.73
1559 1834 2.429478 ACCGTGCCCAGTAAAATGTAC 58.571 47.619 0.00 0.00 0.00 2.90
1560 1835 2.814919 CAACCGTGCCCAGTAAAATGTA 59.185 45.455 0.00 0.00 0.00 2.29
1561 1836 1.611491 CAACCGTGCCCAGTAAAATGT 59.389 47.619 0.00 0.00 0.00 2.71
1562 1837 1.611491 ACAACCGTGCCCAGTAAAATG 59.389 47.619 0.00 0.00 0.00 2.32
1568 1843 1.557832 ACATATACAACCGTGCCCAGT 59.442 47.619 0.00 0.00 0.00 4.00
1617 1892 5.295152 GTTAATTAGGGATGTACCTCACGG 58.705 45.833 0.41 0.00 42.09 4.94
1634 1909 4.284746 TCCATTTTCGGCCAAAGGTTAATT 59.715 37.500 2.24 0.00 0.00 1.40
1639 1914 1.710816 TTCCATTTTCGGCCAAAGGT 58.289 45.000 2.24 0.00 0.00 3.50
1649 1940 3.069443 TGTGGAGCTTGGTTTCCATTTTC 59.931 43.478 0.00 0.00 44.74 2.29
1661 1952 9.994432 CTCTAAAGTTATTATTTGTGGAGCTTG 57.006 33.333 0.00 0.00 0.00 4.01
1677 1968 8.087982 CAGCAAACTTGATGACTCTAAAGTTA 57.912 34.615 1.44 0.00 46.84 2.24
1702 1993 5.586243 TGGCTCTATGCTTATTGTTCAAGTC 59.414 40.000 0.00 0.00 42.39 3.01
1711 2002 3.969976 TCACCTCTGGCTCTATGCTTATT 59.030 43.478 0.00 0.00 42.39 1.40
1749 2040 2.563179 AGTGCAGGTAGTTACTGTCCAG 59.437 50.000 10.03 4.51 38.22 3.86
1758 2049 7.277981 CGATTTACTGATTTAGTGCAGGTAGTT 59.722 37.037 0.00 0.00 40.65 2.24
1768 2059 8.677148 ATATGGTTGCGATTTACTGATTTAGT 57.323 30.769 0.00 0.00 43.56 2.24
1794 2085 7.543947 TTCATAGTGACTAAGTGATGCAATG 57.456 36.000 0.00 0.00 0.00 2.82
1797 2088 8.011844 AGTATTCATAGTGACTAAGTGATGCA 57.988 34.615 0.00 0.00 0.00 3.96
1808 2099 9.088512 CCTCACAAGTTTAGTATTCATAGTGAC 57.911 37.037 0.00 0.00 0.00 3.67
1809 2100 9.031537 TCCTCACAAGTTTAGTATTCATAGTGA 57.968 33.333 0.00 0.00 0.00 3.41
1810 2101 9.823647 ATCCTCACAAGTTTAGTATTCATAGTG 57.176 33.333 0.00 0.00 0.00 2.74
1814 2105 9.331282 GCTTATCCTCACAAGTTTAGTATTCAT 57.669 33.333 0.00 0.00 0.00 2.57
1815 2106 8.318412 TGCTTATCCTCACAAGTTTAGTATTCA 58.682 33.333 0.00 0.00 0.00 2.57
1816 2107 8.718102 TGCTTATCCTCACAAGTTTAGTATTC 57.282 34.615 0.00 0.00 0.00 1.75
1817 2108 9.515226 TTTGCTTATCCTCACAAGTTTAGTATT 57.485 29.630 0.00 0.00 0.00 1.89
1818 2109 8.947115 GTTTGCTTATCCTCACAAGTTTAGTAT 58.053 33.333 0.00 0.00 0.00 2.12
1819 2110 7.389607 GGTTTGCTTATCCTCACAAGTTTAGTA 59.610 37.037 0.00 0.00 0.00 1.82
1820 2111 6.206829 GGTTTGCTTATCCTCACAAGTTTAGT 59.793 38.462 0.00 0.00 0.00 2.24
1821 2112 6.206634 TGGTTTGCTTATCCTCACAAGTTTAG 59.793 38.462 0.00 0.00 0.00 1.85
1822 2113 6.065374 TGGTTTGCTTATCCTCACAAGTTTA 58.935 36.000 0.00 0.00 0.00 2.01
1823 2114 4.892934 TGGTTTGCTTATCCTCACAAGTTT 59.107 37.500 0.00 0.00 0.00 2.66
1824 2115 4.469657 TGGTTTGCTTATCCTCACAAGTT 58.530 39.130 0.00 0.00 0.00 2.66
1825 2116 4.098914 TGGTTTGCTTATCCTCACAAGT 57.901 40.909 0.00 0.00 0.00 3.16
1826 2117 5.649782 AATGGTTTGCTTATCCTCACAAG 57.350 39.130 0.00 0.00 0.00 3.16
1827 2118 5.538053 TGAAATGGTTTGCTTATCCTCACAA 59.462 36.000 0.00 0.00 0.00 3.33
1828 2119 5.076182 TGAAATGGTTTGCTTATCCTCACA 58.924 37.500 0.00 0.00 0.00 3.58
1829 2120 5.643379 TGAAATGGTTTGCTTATCCTCAC 57.357 39.130 0.00 0.00 0.00 3.51
1830 2121 6.662865 TTTGAAATGGTTTGCTTATCCTCA 57.337 33.333 0.00 0.00 0.00 3.86
1831 2122 6.089417 CGTTTTGAAATGGTTTGCTTATCCTC 59.911 38.462 0.00 0.00 0.00 3.71
1832 2123 5.925969 CGTTTTGAAATGGTTTGCTTATCCT 59.074 36.000 0.00 0.00 0.00 3.24
1833 2124 5.923684 TCGTTTTGAAATGGTTTGCTTATCC 59.076 36.000 0.00 0.00 0.00 2.59
1834 2125 7.581011 ATCGTTTTGAAATGGTTTGCTTATC 57.419 32.000 0.00 0.00 0.00 1.75
1835 2126 9.651913 AATATCGTTTTGAAATGGTTTGCTTAT 57.348 25.926 0.00 0.00 0.00 1.73
1836 2127 9.482627 AAATATCGTTTTGAAATGGTTTGCTTA 57.517 25.926 0.00 0.00 0.00 3.09
1837 2128 7.961325 AATATCGTTTTGAAATGGTTTGCTT 57.039 28.000 0.00 0.00 0.00 3.91
1838 2129 7.571059 GCAAATATCGTTTTGAAATGGTTTGCT 60.571 33.333 22.18 0.00 40.25 3.91
1839 2130 6.519419 GCAAATATCGTTTTGAAATGGTTTGC 59.481 34.615 18.93 18.93 38.58 3.68
1840 2131 7.571026 TGCAAATATCGTTTTGAAATGGTTTG 58.429 30.769 10.80 12.43 38.58 2.93
1841 2132 7.721286 TGCAAATATCGTTTTGAAATGGTTT 57.279 28.000 10.80 0.00 38.58 3.27
1842 2133 7.225538 TGTTGCAAATATCGTTTTGAAATGGTT 59.774 29.630 0.00 0.00 36.70 3.67
1843 2134 6.703607 TGTTGCAAATATCGTTTTGAAATGGT 59.296 30.769 0.00 0.00 36.70 3.55
1844 2135 7.114882 TGTTGCAAATATCGTTTTGAAATGG 57.885 32.000 0.00 0.00 36.70 3.16
1845 2136 8.984482 TTTGTTGCAAATATCGTTTTGAAATG 57.016 26.923 0.00 0.00 36.70 2.32
1848 2139 8.420945 CGTATTTGTTGCAAATATCGTTTTGAA 58.579 29.630 14.75 0.26 38.58 2.69
1849 2140 7.803659 TCGTATTTGTTGCAAATATCGTTTTGA 59.196 29.630 21.04 10.48 38.58 2.69
1850 2141 7.933560 TCGTATTTGTTGCAAATATCGTTTTG 58.066 30.769 21.04 4.59 39.16 2.44
1851 2142 8.682128 ATCGTATTTGTTGCAAATATCGTTTT 57.318 26.923 21.04 12.96 0.00 2.43
1852 2143 8.582930 CAATCGTATTTGTTGCAAATATCGTTT 58.417 29.630 21.04 18.48 0.00 3.60
1853 2144 7.965655 TCAATCGTATTTGTTGCAAATATCGTT 59.034 29.630 21.04 15.90 0.00 3.85
1854 2145 7.468441 TCAATCGTATTTGTTGCAAATATCGT 58.532 30.769 21.04 13.57 0.00 3.73
1855 2146 7.890879 TCAATCGTATTTGTTGCAAATATCG 57.109 32.000 14.75 17.08 0.00 2.92
1856 2147 9.449550 TGATCAATCGTATTTGTTGCAAATATC 57.550 29.630 14.75 9.53 0.00 1.63
1857 2148 9.970395 ATGATCAATCGTATTTGTTGCAAATAT 57.030 25.926 14.75 0.00 0.00 1.28
1858 2149 9.235537 CATGATCAATCGTATTTGTTGCAAATA 57.764 29.630 0.00 9.45 0.00 1.40
1859 2150 7.254185 GCATGATCAATCGTATTTGTTGCAAAT 60.254 33.333 0.00 11.18 0.00 2.32
1860 2151 6.034790 GCATGATCAATCGTATTTGTTGCAAA 59.965 34.615 0.00 0.00 0.00 3.68
1861 2152 5.515982 GCATGATCAATCGTATTTGTTGCAA 59.484 36.000 0.00 0.00 0.00 4.08
1862 2153 5.036090 GCATGATCAATCGTATTTGTTGCA 58.964 37.500 0.00 0.00 0.00 4.08
1863 2154 5.276270 AGCATGATCAATCGTATTTGTTGC 58.724 37.500 0.00 0.00 0.00 4.17
1864 2155 6.291427 GCAAGCATGATCAATCGTATTTGTTG 60.291 38.462 0.00 0.59 0.00 3.33
1865 2156 5.745294 GCAAGCATGATCAATCGTATTTGTT 59.255 36.000 0.00 0.00 0.00 2.83
1866 2157 5.066893 AGCAAGCATGATCAATCGTATTTGT 59.933 36.000 0.00 0.00 0.00 2.83
1867 2158 5.516996 AGCAAGCATGATCAATCGTATTTG 58.483 37.500 0.00 0.00 0.00 2.32
1868 2159 5.762825 AGCAAGCATGATCAATCGTATTT 57.237 34.783 0.00 0.00 0.00 1.40
1869 2160 6.866010 TTAGCAAGCATGATCAATCGTATT 57.134 33.333 0.00 0.00 0.00 1.89
1870 2161 6.564686 CGTTTAGCAAGCATGATCAATCGTAT 60.565 38.462 0.00 0.00 0.00 3.06
1871 2162 5.276820 CGTTTAGCAAGCATGATCAATCGTA 60.277 40.000 0.00 0.00 0.00 3.43
1872 2163 4.494690 CGTTTAGCAAGCATGATCAATCGT 60.495 41.667 0.00 0.00 0.00 3.73
1873 2164 3.964347 CGTTTAGCAAGCATGATCAATCG 59.036 43.478 0.00 0.00 0.00 3.34
1874 2165 4.035558 TCCGTTTAGCAAGCATGATCAATC 59.964 41.667 0.00 0.00 0.00 2.67
1875 2166 3.947196 TCCGTTTAGCAAGCATGATCAAT 59.053 39.130 0.00 0.00 0.00 2.57
1876 2167 3.342719 TCCGTTTAGCAAGCATGATCAA 58.657 40.909 0.00 0.00 0.00 2.57
1877 2168 2.984562 TCCGTTTAGCAAGCATGATCA 58.015 42.857 0.00 0.00 0.00 2.92
1878 2169 4.142600 ACTTTCCGTTTAGCAAGCATGATC 60.143 41.667 0.00 0.00 0.00 2.92
1879 2170 3.758554 ACTTTCCGTTTAGCAAGCATGAT 59.241 39.130 0.00 0.00 0.00 2.45
1880 2171 3.058293 CACTTTCCGTTTAGCAAGCATGA 60.058 43.478 0.00 0.00 0.00 3.07
1881 2172 3.236816 CACTTTCCGTTTAGCAAGCATG 58.763 45.455 0.00 0.00 0.00 4.06
1882 2173 2.884639 ACACTTTCCGTTTAGCAAGCAT 59.115 40.909 0.00 0.00 0.00 3.79
1883 2174 2.032799 CACACTTTCCGTTTAGCAAGCA 59.967 45.455 0.00 0.00 0.00 3.91
1884 2175 2.604614 CCACACTTTCCGTTTAGCAAGC 60.605 50.000 0.00 0.00 0.00 4.01
1885 2176 2.031157 CCCACACTTTCCGTTTAGCAAG 60.031 50.000 0.00 0.00 0.00 4.01
1886 2177 1.950909 CCCACACTTTCCGTTTAGCAA 59.049 47.619 0.00 0.00 0.00 3.91
1887 2178 1.600023 CCCACACTTTCCGTTTAGCA 58.400 50.000 0.00 0.00 0.00 3.49
1888 2179 0.879090 CCCCACACTTTCCGTTTAGC 59.121 55.000 0.00 0.00 0.00 3.09
1889 2180 2.224450 ACTCCCCACACTTTCCGTTTAG 60.224 50.000 0.00 0.00 0.00 1.85
1890 2181 1.770061 ACTCCCCACACTTTCCGTTTA 59.230 47.619 0.00 0.00 0.00 2.01
1891 2182 0.549469 ACTCCCCACACTTTCCGTTT 59.451 50.000 0.00 0.00 0.00 3.60
1892 2183 1.426751 TACTCCCCACACTTTCCGTT 58.573 50.000 0.00 0.00 0.00 4.44
1893 2184 1.652947 ATACTCCCCACACTTTCCGT 58.347 50.000 0.00 0.00 0.00 4.69
1894 2185 2.027561 TGAATACTCCCCACACTTTCCG 60.028 50.000 0.00 0.00 0.00 4.30
1895 2186 3.713826 TGAATACTCCCCACACTTTCC 57.286 47.619 0.00 0.00 0.00 3.13
1896 2187 4.906618 TCTTGAATACTCCCCACACTTTC 58.093 43.478 0.00 0.00 0.00 2.62
1897 2188 4.993705 TCTTGAATACTCCCCACACTTT 57.006 40.909 0.00 0.00 0.00 2.66
1898 2189 4.993705 TTCTTGAATACTCCCCACACTT 57.006 40.909 0.00 0.00 0.00 3.16
1899 2190 4.289672 ACATTCTTGAATACTCCCCACACT 59.710 41.667 0.00 0.00 0.00 3.55
1900 2191 4.589908 ACATTCTTGAATACTCCCCACAC 58.410 43.478 0.00 0.00 0.00 3.82
1901 2192 4.927267 ACATTCTTGAATACTCCCCACA 57.073 40.909 0.00 0.00 0.00 4.17
1902 2193 7.881775 AAATACATTCTTGAATACTCCCCAC 57.118 36.000 0.00 0.00 0.00 4.61
1903 2194 9.983024 TTAAAATACATTCTTGAATACTCCCCA 57.017 29.630 0.00 0.00 0.00 4.96
1948 2239 9.062524 ACATGCCATGTACGTACATAATTTATT 57.937 29.630 34.24 17.02 44.57 1.40
1949 2240 8.615878 ACATGCCATGTACGTACATAATTTAT 57.384 30.769 34.24 22.10 44.57 1.40
1951 2242 6.935741 ACATGCCATGTACGTACATAATTT 57.064 33.333 34.24 20.30 44.57 1.82
1963 2254 3.990959 TTCCACTGTACATGCCATGTA 57.009 42.857 13.43 13.43 44.38 2.29
1964 2255 2.877097 TTCCACTGTACATGCCATGT 57.123 45.000 15.69 15.69 46.92 3.21
1965 2256 5.589855 TCTTAATTCCACTGTACATGCCATG 59.410 40.000 2.40 2.40 0.00 3.66
1966 2257 5.754782 TCTTAATTCCACTGTACATGCCAT 58.245 37.500 0.00 0.00 0.00 4.40
1967 2258 5.172687 TCTTAATTCCACTGTACATGCCA 57.827 39.130 0.00 0.00 0.00 4.92
1968 2259 5.065218 CACTCTTAATTCCACTGTACATGCC 59.935 44.000 0.00 0.00 0.00 4.40
1969 2260 5.643777 ACACTCTTAATTCCACTGTACATGC 59.356 40.000 0.00 0.00 0.00 4.06
1970 2261 7.672983 AACACTCTTAATTCCACTGTACATG 57.327 36.000 0.00 0.00 0.00 3.21
1971 2262 8.594550 AGTAACACTCTTAATTCCACTGTACAT 58.405 33.333 0.00 0.00 0.00 2.29
1972 2263 7.959175 AGTAACACTCTTAATTCCACTGTACA 58.041 34.615 0.00 0.00 0.00 2.90
1973 2264 8.463456 GAGTAACACTCTTAATTCCACTGTAC 57.537 38.462 0.00 0.00 41.88 2.90
1988 2279 8.874744 ACTAGTTTTCTTTGAGAGTAACACTC 57.125 34.615 0.00 0.00 45.38 3.51
1991 2282 9.706691 CCATACTAGTTTTCTTTGAGAGTAACA 57.293 33.333 0.00 0.00 0.00 2.41
1992 2283 9.924650 TCCATACTAGTTTTCTTTGAGAGTAAC 57.075 33.333 0.00 0.00 0.00 2.50
1999 2290 9.120538 GCCAATATCCATACTAGTTTTCTTTGA 57.879 33.333 0.00 0.00 0.00 2.69
2000 2291 8.902806 TGCCAATATCCATACTAGTTTTCTTTG 58.097 33.333 0.00 0.00 0.00 2.77
2001 2292 9.646522 ATGCCAATATCCATACTAGTTTTCTTT 57.353 29.630 0.00 0.00 0.00 2.52
2002 2293 9.289782 GATGCCAATATCCATACTAGTTTTCTT 57.710 33.333 0.00 0.00 0.00 2.52
2003 2294 8.664079 AGATGCCAATATCCATACTAGTTTTCT 58.336 33.333 0.00 0.00 0.00 2.52
2004 2295 8.854614 AGATGCCAATATCCATACTAGTTTTC 57.145 34.615 0.00 0.00 0.00 2.29
2005 2296 9.071276 CAAGATGCCAATATCCATACTAGTTTT 57.929 33.333 0.00 0.00 0.00 2.43
2006 2297 7.175641 GCAAGATGCCAATATCCATACTAGTTT 59.824 37.037 0.00 0.00 37.42 2.66
2007 2298 6.656693 GCAAGATGCCAATATCCATACTAGTT 59.343 38.462 0.00 0.00 37.42 2.24
2008 2299 6.176183 GCAAGATGCCAATATCCATACTAGT 58.824 40.000 0.00 0.00 37.42 2.57
2009 2300 6.093219 GTGCAAGATGCCAATATCCATACTAG 59.907 42.308 0.00 0.00 44.23 2.57
2010 2301 5.939883 GTGCAAGATGCCAATATCCATACTA 59.060 40.000 0.00 0.00 44.23 1.82
2011 2302 4.763793 GTGCAAGATGCCAATATCCATACT 59.236 41.667 0.00 0.00 44.23 2.12
2012 2303 4.378770 CGTGCAAGATGCCAATATCCATAC 60.379 45.833 0.00 0.00 44.23 2.39
2013 2304 3.752747 CGTGCAAGATGCCAATATCCATA 59.247 43.478 0.00 0.00 44.23 2.74
2014 2305 2.555325 CGTGCAAGATGCCAATATCCAT 59.445 45.455 0.00 0.00 44.23 3.41
2015 2306 1.948834 CGTGCAAGATGCCAATATCCA 59.051 47.619 0.00 0.00 44.23 3.41
2016 2307 1.267806 CCGTGCAAGATGCCAATATCC 59.732 52.381 0.00 0.00 44.23 2.59
2017 2308 1.949525 ACCGTGCAAGATGCCAATATC 59.050 47.619 0.00 0.00 44.23 1.63
2018 2309 2.057137 ACCGTGCAAGATGCCAATAT 57.943 45.000 0.00 0.00 44.23 1.28
2019 2310 1.832883 AACCGTGCAAGATGCCAATA 58.167 45.000 0.00 0.00 44.23 1.90
2020 2311 1.745087 CTAACCGTGCAAGATGCCAAT 59.255 47.619 0.00 0.00 44.23 3.16
2021 2312 1.164411 CTAACCGTGCAAGATGCCAA 58.836 50.000 0.00 0.00 44.23 4.52
2022 2313 1.305219 GCTAACCGTGCAAGATGCCA 61.305 55.000 0.00 0.00 44.23 4.92
2023 2314 1.026718 AGCTAACCGTGCAAGATGCC 61.027 55.000 0.00 0.00 44.23 4.40
2024 2315 0.097674 CAGCTAACCGTGCAAGATGC 59.902 55.000 0.00 0.00 45.29 3.91
2025 2316 1.725641 TCAGCTAACCGTGCAAGATG 58.274 50.000 0.00 0.00 0.00 2.90
2026 2317 2.472695 TTCAGCTAACCGTGCAAGAT 57.527 45.000 0.00 0.00 0.00 2.40
2027 2318 2.472695 ATTCAGCTAACCGTGCAAGA 57.527 45.000 0.00 0.00 0.00 3.02
2028 2319 3.000041 TGTATTCAGCTAACCGTGCAAG 59.000 45.455 0.00 0.00 0.00 4.01
2029 2320 3.046968 TGTATTCAGCTAACCGTGCAA 57.953 42.857 0.00 0.00 0.00 4.08
2030 2321 2.753055 TGTATTCAGCTAACCGTGCA 57.247 45.000 0.00 0.00 0.00 4.57
2031 2322 3.425758 GGTTTGTATTCAGCTAACCGTGC 60.426 47.826 0.00 0.00 33.59 5.34
2032 2323 4.336532 GGTTTGTATTCAGCTAACCGTG 57.663 45.455 0.00 0.00 33.59 4.94
2035 2326 3.602483 TCCGGTTTGTATTCAGCTAACC 58.398 45.455 0.00 2.71 38.01 2.85
2036 2327 3.621715 CCTCCGGTTTGTATTCAGCTAAC 59.378 47.826 0.00 0.00 0.00 2.34
2037 2328 3.370103 CCCTCCGGTTTGTATTCAGCTAA 60.370 47.826 0.00 0.00 0.00 3.09
2038 2329 2.169769 CCCTCCGGTTTGTATTCAGCTA 59.830 50.000 0.00 0.00 0.00 3.32
2039 2330 1.065418 CCCTCCGGTTTGTATTCAGCT 60.065 52.381 0.00 0.00 0.00 4.24
2040 2331 1.065709 TCCCTCCGGTTTGTATTCAGC 60.066 52.381 0.00 0.00 0.00 4.26
2041 2332 2.420129 CCTCCCTCCGGTTTGTATTCAG 60.420 54.545 0.00 0.00 0.00 3.02
2042 2333 1.557832 CCTCCCTCCGGTTTGTATTCA 59.442 52.381 0.00 0.00 0.00 2.57
2043 2334 1.835531 TCCTCCCTCCGGTTTGTATTC 59.164 52.381 0.00 0.00 0.00 1.75
2044 2335 1.838077 CTCCTCCCTCCGGTTTGTATT 59.162 52.381 0.00 0.00 0.00 1.89
2045 2336 1.497161 CTCCTCCCTCCGGTTTGTAT 58.503 55.000 0.00 0.00 0.00 2.29
2046 2337 1.262640 GCTCCTCCCTCCGGTTTGTA 61.263 60.000 0.00 0.00 0.00 2.41
2047 2338 2.593956 GCTCCTCCCTCCGGTTTGT 61.594 63.158 0.00 0.00 0.00 2.83
2048 2339 2.245438 GAGCTCCTCCCTCCGGTTTG 62.245 65.000 0.87 0.00 0.00 2.93
2049 2340 1.990614 GAGCTCCTCCCTCCGGTTT 60.991 63.158 0.87 0.00 0.00 3.27
2050 2341 2.364448 GAGCTCCTCCCTCCGGTT 60.364 66.667 0.87 0.00 0.00 4.44
2051 2342 3.670629 CTGAGCTCCTCCCTCCGGT 62.671 68.421 12.15 0.00 0.00 5.28
2052 2343 2.837291 CTGAGCTCCTCCCTCCGG 60.837 72.222 12.15 0.00 0.00 5.14
2053 2344 2.837291 CCTGAGCTCCTCCCTCCG 60.837 72.222 12.15 0.00 0.00 4.63
2054 2345 3.160748 GCCTGAGCTCCTCCCTCC 61.161 72.222 12.15 0.00 35.50 4.30
2055 2346 3.160748 GGCCTGAGCTCCTCCCTC 61.161 72.222 12.15 0.00 39.73 4.30
2056 2347 3.693572 AGGCCTGAGCTCCTCCCT 61.694 66.667 3.11 10.63 39.73 4.20
2057 2348 3.160748 GAGGCCTGAGCTCCTCCC 61.161 72.222 12.00 8.36 42.30 4.30
2058 2349 3.535962 CGAGGCCTGAGCTCCTCC 61.536 72.222 12.00 9.48 44.61 4.30
2059 2350 3.535962 CCGAGGCCTGAGCTCCTC 61.536 72.222 12.00 10.20 44.14 3.71
2080 2371 2.173669 CAATAGCGGTGGTGCTCCG 61.174 63.158 0.00 3.33 45.87 4.63
2081 2372 1.078426 ACAATAGCGGTGGTGCTCC 60.078 57.895 0.00 0.00 45.87 4.70
2082 2373 1.421410 CGACAATAGCGGTGGTGCTC 61.421 60.000 0.00 0.00 45.87 4.26
2084 2375 1.693083 GACGACAATAGCGGTGGTGC 61.693 60.000 0.00 0.00 0.00 5.01
2085 2376 0.389296 TGACGACAATAGCGGTGGTG 60.389 55.000 0.00 0.00 0.00 4.17
2086 2377 0.535335 ATGACGACAATAGCGGTGGT 59.465 50.000 0.00 0.00 0.00 4.16
2087 2378 1.202417 AGATGACGACAATAGCGGTGG 60.202 52.381 0.00 0.00 0.00 4.61
2088 2379 2.120232 GAGATGACGACAATAGCGGTG 58.880 52.381 0.00 0.00 0.00 4.94
2089 2380 1.067212 GGAGATGACGACAATAGCGGT 59.933 52.381 0.00 0.00 0.00 5.68
2090 2381 1.067060 TGGAGATGACGACAATAGCGG 59.933 52.381 0.00 0.00 0.00 5.52
2091 2382 2.120232 GTGGAGATGACGACAATAGCG 58.880 52.381 0.00 0.00 0.00 4.26
2092 2383 2.120232 CGTGGAGATGACGACAATAGC 58.880 52.381 0.00 0.00 39.21 2.97
2093 2384 2.120232 GCGTGGAGATGACGACAATAG 58.880 52.381 0.00 0.00 39.21 1.73
2094 2385 1.749063 AGCGTGGAGATGACGACAATA 59.251 47.619 0.00 0.00 39.21 1.90
2095 2386 0.532573 AGCGTGGAGATGACGACAAT 59.467 50.000 0.00 0.00 39.21 2.71
2096 2387 0.109272 GAGCGTGGAGATGACGACAA 60.109 55.000 0.00 0.00 39.21 3.18
2097 2388 1.506718 GAGCGTGGAGATGACGACA 59.493 57.895 0.00 0.00 39.21 4.35
2098 2389 1.226717 GGAGCGTGGAGATGACGAC 60.227 63.158 0.00 0.00 39.21 4.34
2099 2390 2.415608 GGGAGCGTGGAGATGACGA 61.416 63.158 0.00 0.00 39.21 4.20
2100 2391 2.105128 GGGAGCGTGGAGATGACG 59.895 66.667 0.00 0.00 39.87 4.35
2101 2392 2.105128 CGGGAGCGTGGAGATGAC 59.895 66.667 0.00 0.00 0.00 3.06
2102 2393 3.147595 CCGGGAGCGTGGAGATGA 61.148 66.667 0.00 0.00 0.00 2.92
2103 2394 4.899239 GCCGGGAGCGTGGAGATG 62.899 72.222 2.18 0.00 0.00 2.90
2138 2429 2.017559 CTACCACCGTAGCTGGGAGC 62.018 65.000 12.15 0.00 42.84 4.70
2139 2430 1.392710 CCTACCACCGTAGCTGGGAG 61.393 65.000 12.15 3.49 40.69 4.30
2140 2431 1.380785 CCTACCACCGTAGCTGGGA 60.381 63.158 12.15 0.00 40.69 4.37
2141 2432 3.090219 GCCTACCACCGTAGCTGGG 62.090 68.421 0.00 0.00 40.69 4.45
2142 2433 2.499685 GCCTACCACCGTAGCTGG 59.500 66.667 0.00 0.00 40.69 4.85
2143 2434 2.104331 CGCCTACCACCGTAGCTG 59.896 66.667 0.00 0.00 40.69 4.24
2144 2435 2.044650 TCGCCTACCACCGTAGCT 60.045 61.111 0.00 0.00 40.69 3.32
2145 2436 2.103736 GTCGCCTACCACCGTAGC 59.896 66.667 0.00 0.00 40.69 3.58
2146 2437 1.028330 TCTGTCGCCTACCACCGTAG 61.028 60.000 0.00 0.00 41.55 3.51
2147 2438 1.002257 TCTGTCGCCTACCACCGTA 60.002 57.895 0.00 0.00 0.00 4.02
2148 2439 2.282674 TCTGTCGCCTACCACCGT 60.283 61.111 0.00 0.00 0.00 4.83
2149 2440 2.181021 GTCTGTCGCCTACCACCG 59.819 66.667 0.00 0.00 0.00 4.94
2150 2441 2.577593 GGTCTGTCGCCTACCACC 59.422 66.667 0.00 0.00 33.28 4.61
2151 2442 2.181021 CGGTCTGTCGCCTACCAC 59.819 66.667 0.00 0.00 32.55 4.16
2152 2443 3.066190 CCGGTCTGTCGCCTACCA 61.066 66.667 0.00 0.00 32.55 3.25
2153 2444 3.834799 CCCGGTCTGTCGCCTACC 61.835 72.222 0.00 0.00 0.00 3.18
2154 2445 3.066814 ACCCGGTCTGTCGCCTAC 61.067 66.667 0.00 0.00 0.00 3.18
2155 2446 3.066190 CACCCGGTCTGTCGCCTA 61.066 66.667 0.00 0.00 0.00 3.93
2158 2449 4.436998 CTCCACCCGGTCTGTCGC 62.437 72.222 0.00 0.00 0.00 5.19
2159 2450 4.436998 GCTCCACCCGGTCTGTCG 62.437 72.222 0.00 0.00 0.00 4.35
2160 2451 4.083862 GGCTCCACCCGGTCTGTC 62.084 72.222 0.00 0.00 0.00 3.51
2161 2452 4.640690 AGGCTCCACCCGGTCTGT 62.641 66.667 0.00 0.00 40.58 3.41
2162 2453 4.087892 CAGGCTCCACCCGGTCTG 62.088 72.222 0.00 0.00 40.58 3.51
2167 2458 4.087892 CTCACCAGGCTCCACCCG 62.088 72.222 0.00 0.00 40.58 5.28
2168 2459 3.721706 CCTCACCAGGCTCCACCC 61.722 72.222 0.00 0.00 40.58 4.61
2169 2460 1.997874 ATCCTCACCAGGCTCCACC 60.998 63.158 0.00 0.00 40.12 4.61
2170 2461 1.222936 CATCCTCACCAGGCTCCAC 59.777 63.158 0.00 0.00 40.12 4.02
2171 2462 3.731547 CATCCTCACCAGGCTCCA 58.268 61.111 0.00 0.00 40.12 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.