Multiple sequence alignment - TraesCS3D01G476000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G476000 chr3D 100.000 4605 0 0 1 4605 577026917 577022313 0.000000e+00 8504.0
1 TraesCS3D01G476000 chr3D 96.556 784 25 2 3042 3825 577179151 577179932 0.000000e+00 1297.0
2 TraesCS3D01G476000 chr3D 88.592 824 60 14 2228 3024 577178347 577179163 0.000000e+00 970.0
3 TraesCS3D01G476000 chr3D 87.289 653 35 15 944 1593 577176895 577177502 0.000000e+00 702.0
4 TraesCS3D01G476000 chr3D 85.318 613 50 22 2710 3311 576854096 576853513 8.530000e-167 597.0
5 TraesCS3D01G476000 chr3D 85.009 527 63 11 3348 3858 576853509 576852983 5.280000e-144 521.0
6 TraesCS3D01G476000 chr3D 85.325 477 40 12 3176 3627 577144386 577143915 2.510000e-127 466.0
7 TraesCS3D01G476000 chr3D 84.292 452 41 15 1794 2233 577156108 577155675 9.220000e-112 414.0
8 TraesCS3D01G476000 chr3D 81.705 481 59 12 2228 2696 575838729 575838266 1.560000e-99 374.0
9 TraesCS3D01G476000 chr3D 89.147 258 24 4 1047 1303 575840360 575840106 7.430000e-83 318.0
10 TraesCS3D01G476000 chr3D 85.079 315 36 8 995 1302 577156724 577156414 1.240000e-80 311.0
11 TraesCS3D01G476000 chr3D 81.201 383 49 15 2228 2597 575839261 575838889 2.100000e-73 287.0
12 TraesCS3D01G476000 chr3D 82.405 341 35 11 1633 1963 576855612 576855287 1.630000e-69 274.0
13 TraesCS3D01G476000 chr3D 83.278 299 31 14 1723 2007 575839789 575839496 1.640000e-64 257.0
14 TraesCS3D01G476000 chr3D 87.805 205 24 1 2803 3006 575837332 575837128 5.950000e-59 239.0
15 TraesCS3D01G476000 chr3D 85.976 164 17 6 4267 4426 577183094 577183255 2.200000e-38 171.0
16 TraesCS3D01G476000 chr3D 82.741 197 16 8 1688 1872 577177629 577177819 4.770000e-35 159.0
17 TraesCS3D01G476000 chr3D 94.118 102 5 1 2900 3000 575765500 575765399 2.220000e-33 154.0
18 TraesCS3D01G476000 chr3D 82.514 183 10 7 2068 2229 577178113 577178294 1.730000e-29 141.0
19 TraesCS3D01G476000 chr3D 79.535 215 15 14 2037 2233 575839511 575839308 4.840000e-25 126.0
20 TraesCS3D01G476000 chr3D 92.308 91 3 1 2068 2158 576854970 576854884 4.840000e-25 126.0
21 TraesCS3D01G476000 chr3D 92.308 91 3 1 2020 2106 577154801 577154711 4.840000e-25 126.0
22 TraesCS3D01G476000 chr3D 100.000 32 0 0 2710 2741 575837391 575837360 4.980000e-05 60.2
23 TraesCS3D01G476000 chr3D 100.000 31 0 0 923 953 577176860 577176890 1.790000e-04 58.4
24 TraesCS3D01G476000 chr3A 93.510 2265 98 24 809 3034 712321924 712324178 0.000000e+00 3323.0
25 TraesCS3D01G476000 chr3A 89.084 1649 93 44 2228 3825 712454135 712455747 0.000000e+00 1967.0
26 TraesCS3D01G476000 chr3A 97.422 892 17 2 3016 3903 712324202 712325091 0.000000e+00 1515.0
27 TraesCS3D01G476000 chr3A 84.510 1091 87 31 995 2066 712379115 712380142 0.000000e+00 1003.0
28 TraesCS3D01G476000 chr3A 90.512 664 36 13 3964 4605 712325816 712326474 0.000000e+00 852.0
29 TraesCS3D01G476000 chr3A 83.037 731 77 27 3054 3768 711381458 711380759 1.820000e-173 619.0
30 TraesCS3D01G476000 chr3A 83.140 688 63 22 921 1593 712452665 712453314 3.090000e-161 579.0
31 TraesCS3D01G476000 chr3A 87.631 477 40 11 2228 2695 712380510 712380976 1.890000e-148 536.0
32 TraesCS3D01G476000 chr3A 86.515 482 47 11 2228 2697 711383494 711383019 8.830000e-142 514.0
33 TraesCS3D01G476000 chr3A 97.241 290 8 0 3091 3380 712381374 712381663 4.140000e-135 492.0
34 TraesCS3D01G476000 chr3A 84.375 512 44 18 3098 3604 712308328 712308808 1.940000e-128 470.0
35 TraesCS3D01G476000 chr3A 82.090 536 43 33 1723 2233 711385078 711384571 4.290000e-110 409.0
36 TraesCS3D01G476000 chr3A 87.931 290 28 5 3345 3627 711302381 711302092 7.380000e-88 335.0
37 TraesCS3D01G476000 chr3A 89.922 258 21 4 1048 1303 711385650 711385396 1.240000e-85 327.0
38 TraesCS3D01G476000 chr3A 81.606 386 27 20 1848 2228 712307193 712307539 3.510000e-71 279.0
39 TraesCS3D01G476000 chr3A 86.207 203 22 3 2803 3004 711381668 711381471 1.000000e-51 215.0
40 TraesCS3D01G476000 chr3A 85.326 184 6 7 2068 2230 712453900 712454083 2.200000e-38 171.0
41 TraesCS3D01G476000 chr3A 83.799 179 23 6 4270 4445 712479074 712479249 1.020000e-36 165.0
42 TraesCS3D01G476000 chr3A 82.857 140 10 6 1734 1863 712453475 712453610 3.770000e-21 113.0
43 TraesCS3D01G476000 chr3A 90.411 73 6 1 2710 2781 711381737 711381665 1.360000e-15 95.3
44 TraesCS3D01G476000 chr2B 94.731 854 41 1 3111 3964 657053176 657052327 0.000000e+00 1325.0
45 TraesCS3D01G476000 chr2B 91.585 713 44 3 995 1695 657055078 657054370 0.000000e+00 970.0
46 TraesCS3D01G476000 chr2B 91.429 560 32 4 1688 2237 657054310 657053757 0.000000e+00 754.0
47 TraesCS3D01G476000 chr2B 91.515 330 16 3 3966 4284 657051704 657051376 1.180000e-120 444.0
48 TraesCS3D01G476000 chr2B 87.234 376 24 9 2228 2601 657053711 657053358 1.540000e-109 407.0
49 TraesCS3D01G476000 chr2B 95.732 164 7 0 2850 3013 657053337 657053174 9.820000e-67 265.0
50 TraesCS3D01G476000 chr2B 87.730 163 17 3 462 622 439218772 439218611 2.190000e-43 187.0
51 TraesCS3D01G476000 chr3B 95.299 787 26 8 3049 3825 768725801 768726586 0.000000e+00 1238.0
52 TraesCS3D01G476000 chr3B 87.590 830 61 21 2228 3024 768724985 768725805 0.000000e+00 924.0
53 TraesCS3D01G476000 chr3B 87.645 777 66 17 3091 3858 768672208 768672963 0.000000e+00 876.0
54 TraesCS3D01G476000 chr3B 85.164 701 67 22 3110 3793 768264590 768265270 0.000000e+00 684.0
55 TraesCS3D01G476000 chr3B 82.375 800 71 28 921 1687 768723447 768724209 2.340000e-177 632.0
56 TraesCS3D01G476000 chr3B 80.570 772 88 31 944 1695 768572540 768573269 5.240000e-149 538.0
57 TraesCS3D01G476000 chr3B 82.110 654 60 27 941 1580 768670101 768670711 1.480000e-139 507.0
58 TraesCS3D01G476000 chr3B 82.004 539 40 23 1723 2233 768261969 768262478 5.550000e-109 405.0
59 TraesCS3D01G476000 chr3B 81.648 534 48 26 1723 2233 768511163 768511669 9.280000e-107 398.0
60 TraesCS3D01G476000 chr3B 88.449 303 32 2 2721 3021 768671826 768672127 3.390000e-96 363.0
61 TraesCS3D01G476000 chr3B 83.498 406 25 11 1723 2106 766835337 766834952 1.590000e-89 340.0
62 TraesCS3D01G476000 chr3B 87.329 292 28 3 1003 1288 768261351 768261639 4.440000e-85 326.0
63 TraesCS3D01G476000 chr3B 85.304 313 36 7 995 1306 768510648 768510951 9.620000e-82 315.0
64 TraesCS3D01G476000 chr3B 80.477 461 46 25 1714 2160 768670852 768671282 3.460000e-81 313.0
65 TraesCS3D01G476000 chr3B 84.783 322 33 13 995 1306 766835878 766835563 4.470000e-80 309.0
66 TraesCS3D01G476000 chr3B 86.341 205 27 1 2803 3006 768264320 768264524 6.000000e-54 222.0
67 TraesCS3D01G476000 chr3B 82.673 202 12 10 1688 1872 768724289 768724484 1.720000e-34 158.0
68 TraesCS3D01G476000 chr3B 90.411 73 2 4 2161 2228 766834927 766834855 1.760000e-14 91.6
69 TraesCS3D01G476000 chr3B 100.000 32 0 0 2710 2741 768264261 768264292 4.980000e-05 60.2
70 TraesCS3D01G476000 chr5B 91.183 465 31 8 7 464 555955773 555955312 1.410000e-174 623.0
71 TraesCS3D01G476000 chr4D 90.948 464 32 8 7 464 477025352 477025811 2.350000e-172 616.0
72 TraesCS3D01G476000 chr4D 87.654 162 18 2 462 622 287304539 287304699 2.190000e-43 187.0
73 TraesCS3D01G476000 chr7A 90.598 468 32 3 7 464 639295075 639294610 1.100000e-170 610.0
74 TraesCS3D01G476000 chr7A 94.064 219 10 2 248 464 69714723 69714940 3.430000e-86 329.0
75 TraesCS3D01G476000 chr7A 92.308 208 15 1 257 464 233340684 233340478 1.250000e-75 294.0
76 TraesCS3D01G476000 chr7A 93.434 198 8 3 267 462 686231510 686231704 5.830000e-74 289.0
77 TraesCS3D01G476000 chr7A 93.413 167 11 0 7 173 69714275 69714441 9.890000e-62 248.0
78 TraesCS3D01G476000 chr7A 87.117 163 18 3 462 622 413650565 413650726 1.020000e-41 182.0
79 TraesCS3D01G476000 chr7A 87.421 159 18 2 462 618 716650300 716650142 1.020000e-41 182.0
80 TraesCS3D01G476000 chr7A 94.068 118 7 0 7 124 686231111 686231228 3.660000e-41 180.0
81 TraesCS3D01G476000 chr6A 88.397 474 32 12 7 462 224249310 224248842 2.420000e-152 549.0
82 TraesCS3D01G476000 chr1A 88.453 459 34 9 7 464 360402945 360403385 1.890000e-148 536.0
83 TraesCS3D01G476000 chr4B 87.212 477 45 10 7 468 661648925 661648450 3.160000e-146 529.0
84 TraesCS3D01G476000 chr6B 88.344 163 16 3 462 622 648092886 648093047 4.700000e-45 193.0
85 TraesCS3D01G476000 chr6B 73.792 538 67 41 7 481 642383872 642383346 1.340000e-30 145.0
86 TraesCS3D01G476000 chr6D 87.425 167 17 4 459 622 455563516 455563351 6.080000e-44 189.0
87 TraesCS3D01G476000 chr7B 87.730 163 17 3 462 622 750407119 750407280 2.190000e-43 187.0
88 TraesCS3D01G476000 chr4A 87.117 163 19 2 461 622 677117230 677117069 2.830000e-42 183.0
89 TraesCS3D01G476000 chr5A 87.421 159 18 2 465 622 469115966 469115809 1.020000e-41 182.0
90 TraesCS3D01G476000 chr1B 73.896 521 67 41 5 464 399001538 399002050 1.340000e-30 145.0
91 TraesCS3D01G476000 chr2A 97.143 35 1 0 731 765 295332582 295332548 4.980000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G476000 chr3D 577022313 577026917 4604 True 8504.000000 8504 100.000000 1 4605 1 chr3D.!!$R2 4604
1 TraesCS3D01G476000 chr3D 577176860 577183255 6395 False 499.771429 1297 89.095429 923 4426 7 chr3D.!!$F1 3503
2 TraesCS3D01G476000 chr3D 576852983 576855612 2629 True 379.500000 597 86.260000 1633 3858 4 chr3D.!!$R5 2225
3 TraesCS3D01G476000 chr3D 577154711 577156724 2013 True 283.666667 414 87.226333 995 2233 3 chr3D.!!$R6 1238
4 TraesCS3D01G476000 chr3D 575837128 575840360 3232 True 237.314286 374 86.095857 1047 3006 7 chr3D.!!$R4 1959
5 TraesCS3D01G476000 chr3A 712321924 712326474 4550 False 1896.666667 3323 93.814667 809 4605 3 chr3A.!!$F3 3796
6 TraesCS3D01G476000 chr3A 712452665 712455747 3082 False 707.500000 1967 85.101750 921 3825 4 chr3A.!!$F5 2904
7 TraesCS3D01G476000 chr3A 712379115 712381663 2548 False 677.000000 1003 89.794000 995 3380 3 chr3A.!!$F4 2385
8 TraesCS3D01G476000 chr3A 712307193 712308808 1615 False 374.500000 470 82.990500 1848 3604 2 chr3A.!!$F2 1756
9 TraesCS3D01G476000 chr3A 711380759 711385650 4891 True 363.216667 619 86.363667 1048 3768 6 chr3A.!!$R2 2720
10 TraesCS3D01G476000 chr2B 657051376 657055078 3702 True 694.166667 1325 92.037667 995 4284 6 chr2B.!!$R2 3289
11 TraesCS3D01G476000 chr3B 768723447 768726586 3139 False 738.000000 1238 86.984250 921 3825 4 chr3B.!!$F5 2904
12 TraesCS3D01G476000 chr3B 768572540 768573269 729 False 538.000000 538 80.570000 944 1695 1 chr3B.!!$F1 751
13 TraesCS3D01G476000 chr3B 768670101 768672963 2862 False 514.750000 876 84.670250 941 3858 4 chr3B.!!$F4 2917
14 TraesCS3D01G476000 chr3B 768510648 768511669 1021 False 356.500000 398 83.476000 995 2233 2 chr3B.!!$F3 1238
15 TraesCS3D01G476000 chr3B 768261351 768265270 3919 False 339.440000 684 88.167600 1003 3793 5 chr3B.!!$F2 2790
16 TraesCS3D01G476000 chr3B 766834855 766835878 1023 True 246.866667 340 86.230667 995 2228 3 chr3B.!!$R1 1233
17 TraesCS3D01G476000 chr7A 69714275 69714940 665 False 288.500000 329 93.738500 7 464 2 chr7A.!!$F2 457
18 TraesCS3D01G476000 chr7A 686231111 686231704 593 False 234.500000 289 93.751000 7 462 2 chr7A.!!$F3 455

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
556 766 0.035317 CTGTGAGGTAAGCTGTGGCA 59.965 55.000 0.00 0.0 41.70 4.92 F
783 993 0.036164 AGGGCACGAACACATTGCTA 59.964 50.000 0.00 0.0 36.46 3.49 F
784 994 0.447801 GGGCACGAACACATTGCTAG 59.552 55.000 0.00 0.0 36.46 3.42 F
910 1121 0.614979 TCTGCCTGACTAGTGGACCC 60.615 60.000 0.00 0.0 0.00 4.46 F
1199 1532 1.134367 CATCCCGCACTTCTTCGTCTA 59.866 52.381 0.00 0.0 0.00 2.59 F
1229 1562 1.663173 GCCTCGGGCTCTACATCTC 59.337 63.158 7.58 0.0 46.69 2.75 F
1436 1832 2.037121 AGTGCCCCAAAACAAATACTGC 59.963 45.455 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1997 2999 0.321021 AGCTGACAACAGGAGCAGAG 59.679 55.000 0.00 0.00 43.62 3.35 R
2523 5703 2.618709 GGACAAATCGGCCCTTTAGATG 59.381 50.000 0.00 0.00 0.00 2.90 R
2797 6353 0.896019 TGGTACCACCCCAAAATGCG 60.896 55.000 11.60 0.00 37.50 4.73 R
2810 7022 5.077564 AGAAAGAACCTTGGAATTGGTACC 58.922 41.667 4.43 4.43 35.17 3.34 R
3037 8065 7.598869 ACACACACACATCATACTAACAGTAAG 59.401 37.037 0.00 0.00 33.89 2.34 R
3498 8634 3.564235 ACTCGTCATACTTGTAACGCA 57.436 42.857 1.51 0.00 35.22 5.24 R
3803 8963 6.070656 CCCCTAAATACAACATCACATCCAT 58.929 40.000 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 3.701530 CGAGTTGCTGCGTCGCAA 61.702 61.111 22.01 4.15 46.73 4.85
194 195 4.329545 GGTGGCACTTGGCGGAGA 62.330 66.667 18.45 0.00 46.16 3.71
195 196 2.045926 GTGGCACTTGGCGGAGAT 60.046 61.111 11.13 0.00 46.16 2.75
196 197 2.046023 TGGCACTTGGCGGAGATG 60.046 61.111 0.00 0.00 46.16 2.90
197 198 3.512516 GGCACTTGGCGGAGATGC 61.513 66.667 0.00 0.00 46.16 3.91
198 199 3.869272 GCACTTGGCGGAGATGCG 61.869 66.667 0.00 0.00 35.06 4.73
199 200 3.869272 CACTTGGCGGAGATGCGC 61.869 66.667 10.45 10.45 35.06 6.09
229 230 4.500116 GGAGTCGCCAGTCGCCTC 62.500 72.222 0.00 0.00 41.97 4.70
230 231 4.838486 GAGTCGCCAGTCGCCTCG 62.838 72.222 0.00 0.00 33.35 4.63
290 498 0.318699 CTCCTTTCTCGCGTGTGACA 60.319 55.000 5.77 0.00 0.00 3.58
323 531 1.278985 GGGAAAGGGGAAAAGCAATGG 59.721 52.381 0.00 0.00 0.00 3.16
324 532 1.278985 GGAAAGGGGAAAAGCAATGGG 59.721 52.381 0.00 0.00 0.00 4.00
445 655 5.665459 ACATTTGTTTGTTTTCATCCGGAA 58.335 33.333 9.01 0.00 0.00 4.30
447 657 5.584253 TTTGTTTGTTTTCATCCGGAAGA 57.416 34.783 9.01 6.82 36.72 2.87
450 660 5.344884 TGTTTGTTTTCATCCGGAAGAAAC 58.655 37.500 29.22 25.78 36.72 2.78
464 674 4.487019 GGAAGAAACACAAACGTTTTCCA 58.513 39.130 11.66 0.00 39.17 3.53
465 675 5.106442 GGAAGAAACACAAACGTTTTCCAT 58.894 37.500 11.66 0.00 39.17 3.41
466 676 6.267070 GGAAGAAACACAAACGTTTTCCATA 58.733 36.000 11.66 0.00 39.17 2.74
467 677 6.752815 GGAAGAAACACAAACGTTTTCCATAA 59.247 34.615 11.66 0.00 39.17 1.90
468 678 7.275999 GGAAGAAACACAAACGTTTTCCATAAA 59.724 33.333 11.66 0.00 39.17 1.40
469 679 8.535690 AAGAAACACAAACGTTTTCCATAAAA 57.464 26.923 11.66 0.00 39.17 1.52
470 680 8.180317 AGAAACACAAACGTTTTCCATAAAAG 57.820 30.769 11.66 0.00 39.17 2.27
471 681 8.030106 AGAAACACAAACGTTTTCCATAAAAGA 58.970 29.630 11.66 0.00 39.17 2.52
472 682 8.710835 AAACACAAACGTTTTCCATAAAAGAT 57.289 26.923 11.66 0.00 35.58 2.40
473 683 8.710835 AACACAAACGTTTTCCATAAAAGATT 57.289 26.923 11.66 0.00 35.29 2.40
474 684 8.710835 ACACAAACGTTTTCCATAAAAGATTT 57.289 26.923 11.66 0.00 35.29 2.17
475 685 9.804758 ACACAAACGTTTTCCATAAAAGATTTA 57.195 25.926 11.66 0.00 35.29 1.40
494 704 8.975663 AGATTTAGTTGATGATGATGATGTGT 57.024 30.769 0.00 0.00 0.00 3.72
495 705 9.053840 AGATTTAGTTGATGATGATGATGTGTC 57.946 33.333 0.00 0.00 0.00 3.67
496 706 8.975663 ATTTAGTTGATGATGATGATGTGTCT 57.024 30.769 0.00 0.00 0.00 3.41
497 707 7.781548 TTAGTTGATGATGATGATGTGTCTG 57.218 36.000 0.00 0.00 0.00 3.51
498 708 5.742063 AGTTGATGATGATGATGTGTCTGT 58.258 37.500 0.00 0.00 0.00 3.41
499 709 5.816258 AGTTGATGATGATGATGTGTCTGTC 59.184 40.000 0.00 0.00 0.00 3.51
500 710 5.347620 TGATGATGATGATGTGTCTGTCA 57.652 39.130 0.00 0.00 0.00 3.58
501 711 5.925509 TGATGATGATGATGTGTCTGTCAT 58.074 37.500 0.00 0.00 37.76 3.06
502 712 5.989777 TGATGATGATGATGTGTCTGTCATC 59.010 40.000 8.09 8.09 46.86 2.92
503 713 5.609533 TGATGATGATGTGTCTGTCATCT 57.390 39.130 14.27 3.16 46.83 2.90
504 714 5.357257 TGATGATGATGTGTCTGTCATCTG 58.643 41.667 14.27 0.00 46.83 2.90
505 715 3.528532 TGATGATGTGTCTGTCATCTGC 58.471 45.455 14.27 2.52 46.83 4.26
506 716 2.391616 TGATGTGTCTGTCATCTGCC 57.608 50.000 7.30 0.00 41.30 4.85
507 717 1.624813 TGATGTGTCTGTCATCTGCCA 59.375 47.619 7.30 0.00 41.30 4.92
508 718 2.237893 TGATGTGTCTGTCATCTGCCAT 59.762 45.455 7.30 0.00 41.30 4.40
509 719 2.391616 TGTGTCTGTCATCTGCCATC 57.608 50.000 0.00 0.00 0.00 3.51
510 720 1.904537 TGTGTCTGTCATCTGCCATCT 59.095 47.619 0.00 0.00 0.00 2.90
511 721 2.093816 TGTGTCTGTCATCTGCCATCTC 60.094 50.000 0.00 0.00 0.00 2.75
512 722 2.168106 GTGTCTGTCATCTGCCATCTCT 59.832 50.000 0.00 0.00 0.00 3.10
513 723 2.167900 TGTCTGTCATCTGCCATCTCTG 59.832 50.000 0.00 0.00 0.00 3.35
514 724 2.429971 GTCTGTCATCTGCCATCTCTGA 59.570 50.000 0.00 0.00 0.00 3.27
515 725 2.429971 TCTGTCATCTGCCATCTCTGAC 59.570 50.000 0.00 0.00 37.36 3.51
516 726 1.483827 TGTCATCTGCCATCTCTGACC 59.516 52.381 0.00 0.00 36.29 4.02
517 727 1.483827 GTCATCTGCCATCTCTGACCA 59.516 52.381 0.00 0.00 32.08 4.02
518 728 2.104451 GTCATCTGCCATCTCTGACCAT 59.896 50.000 0.00 0.00 32.08 3.55
519 729 2.775960 TCATCTGCCATCTCTGACCATT 59.224 45.455 0.00 0.00 0.00 3.16
520 730 3.969312 TCATCTGCCATCTCTGACCATTA 59.031 43.478 0.00 0.00 0.00 1.90
521 731 4.040095 TCATCTGCCATCTCTGACCATTAG 59.960 45.833 0.00 0.00 0.00 1.73
522 732 3.646534 TCTGCCATCTCTGACCATTAGA 58.353 45.455 0.00 0.00 0.00 2.10
523 733 4.229639 TCTGCCATCTCTGACCATTAGAT 58.770 43.478 0.00 0.00 0.00 1.98
524 734 4.282957 TCTGCCATCTCTGACCATTAGATC 59.717 45.833 0.00 0.00 0.00 2.75
525 735 4.229639 TGCCATCTCTGACCATTAGATCT 58.770 43.478 0.00 0.00 0.00 2.75
526 736 4.040095 TGCCATCTCTGACCATTAGATCTG 59.960 45.833 5.18 0.00 0.00 2.90
527 737 4.567971 CCATCTCTGACCATTAGATCTGC 58.432 47.826 5.18 0.00 0.00 4.26
528 738 4.040095 CCATCTCTGACCATTAGATCTGCA 59.960 45.833 5.18 0.00 0.00 4.41
529 739 5.280062 CCATCTCTGACCATTAGATCTGCAT 60.280 44.000 5.18 0.00 0.00 3.96
530 740 5.465532 TCTCTGACCATTAGATCTGCATC 57.534 43.478 5.18 0.00 0.00 3.91
531 741 5.146298 TCTCTGACCATTAGATCTGCATCT 58.854 41.667 5.18 0.00 42.48 2.90
532 742 6.310149 TCTCTGACCATTAGATCTGCATCTA 58.690 40.000 5.18 0.00 40.18 1.98
540 750 5.836821 TTAGATCTGCATCTAACGACTGT 57.163 39.130 5.18 0.00 43.80 3.55
541 751 4.039151 AGATCTGCATCTAACGACTGTG 57.961 45.455 0.00 0.00 37.63 3.66
542 752 3.696548 AGATCTGCATCTAACGACTGTGA 59.303 43.478 0.00 0.00 37.63 3.58
543 753 3.494045 TCTGCATCTAACGACTGTGAG 57.506 47.619 0.00 0.00 0.00 3.51
544 754 2.164422 TCTGCATCTAACGACTGTGAGG 59.836 50.000 0.00 0.00 0.00 3.86
545 755 1.893137 TGCATCTAACGACTGTGAGGT 59.107 47.619 0.00 0.00 0.00 3.85
546 756 3.086282 TGCATCTAACGACTGTGAGGTA 58.914 45.455 0.00 0.00 0.00 3.08
547 757 3.508402 TGCATCTAACGACTGTGAGGTAA 59.492 43.478 0.00 0.00 0.00 2.85
548 758 4.106197 GCATCTAACGACTGTGAGGTAAG 58.894 47.826 0.00 0.00 0.00 2.34
549 759 3.844577 TCTAACGACTGTGAGGTAAGC 57.155 47.619 0.00 0.00 0.00 3.09
550 760 3.418995 TCTAACGACTGTGAGGTAAGCT 58.581 45.455 0.00 0.00 0.00 3.74
551 761 2.440539 AACGACTGTGAGGTAAGCTG 57.559 50.000 0.00 0.00 0.00 4.24
552 762 1.329256 ACGACTGTGAGGTAAGCTGT 58.671 50.000 0.00 0.00 0.00 4.40
553 763 1.000163 ACGACTGTGAGGTAAGCTGTG 60.000 52.381 0.00 0.00 0.00 3.66
554 764 1.670087 CGACTGTGAGGTAAGCTGTGG 60.670 57.143 0.00 0.00 0.00 4.17
555 765 0.035458 ACTGTGAGGTAAGCTGTGGC 59.965 55.000 0.00 0.00 39.06 5.01
556 766 0.035317 CTGTGAGGTAAGCTGTGGCA 59.965 55.000 0.00 0.00 41.70 4.92
557 767 0.692476 TGTGAGGTAAGCTGTGGCAT 59.308 50.000 0.00 0.00 41.70 4.40
558 768 1.073763 TGTGAGGTAAGCTGTGGCATT 59.926 47.619 0.00 0.00 41.70 3.56
559 769 2.162681 GTGAGGTAAGCTGTGGCATTT 58.837 47.619 0.00 0.00 41.70 2.32
560 770 2.558359 GTGAGGTAAGCTGTGGCATTTT 59.442 45.455 0.00 0.00 41.70 1.82
561 771 3.005791 GTGAGGTAAGCTGTGGCATTTTT 59.994 43.478 0.00 0.00 41.70 1.94
562 772 3.005684 TGAGGTAAGCTGTGGCATTTTTG 59.994 43.478 0.00 0.00 41.70 2.44
563 773 2.068519 GGTAAGCTGTGGCATTTTTGC 58.931 47.619 0.00 0.00 41.70 3.68
564 774 2.547642 GGTAAGCTGTGGCATTTTTGCA 60.548 45.455 0.00 0.00 41.70 4.08
565 775 2.328819 AAGCTGTGGCATTTTTGCAA 57.671 40.000 0.00 0.00 41.70 4.08
566 776 1.585297 AGCTGTGGCATTTTTGCAAC 58.415 45.000 0.00 0.00 41.70 4.17
567 777 1.134461 AGCTGTGGCATTTTTGCAACA 60.134 42.857 0.00 7.85 45.54 3.33
568 778 1.669779 GCTGTGGCATTTTTGCAACAA 59.330 42.857 9.29 0.00 46.76 2.83
569 779 2.286536 GCTGTGGCATTTTTGCAACAAG 60.287 45.455 9.29 5.45 46.76 3.16
570 780 2.286872 TGTGGCATTTTTGCAACAAGG 58.713 42.857 5.72 5.65 44.85 3.61
571 781 1.002576 GTGGCATTTTTGCAACAAGGC 60.003 47.619 22.90 22.90 38.55 4.35
572 782 0.592637 GGCATTTTTGCAACAAGGCC 59.407 50.000 30.98 30.98 42.20 5.19
573 783 0.592637 GCATTTTTGCAACAAGGCCC 59.407 50.000 21.01 0.00 34.41 5.80
574 784 1.237533 CATTTTTGCAACAAGGCCCC 58.762 50.000 0.00 0.00 0.00 5.80
575 785 0.842635 ATTTTTGCAACAAGGCCCCA 59.157 45.000 0.00 0.00 0.00 4.96
576 786 0.107459 TTTTTGCAACAAGGCCCCAC 60.107 50.000 0.00 0.00 0.00 4.61
577 787 0.980231 TTTTGCAACAAGGCCCCACT 60.980 50.000 0.00 0.00 0.00 4.00
578 788 0.980231 TTTGCAACAAGGCCCCACTT 60.980 50.000 0.00 0.00 0.00 3.16
579 789 0.980231 TTGCAACAAGGCCCCACTTT 60.980 50.000 0.00 0.00 0.00 2.66
580 790 0.980231 TGCAACAAGGCCCCACTTTT 60.980 50.000 0.00 0.00 0.00 2.27
581 791 0.249868 GCAACAAGGCCCCACTTTTC 60.250 55.000 0.00 0.00 0.00 2.29
582 792 1.413118 CAACAAGGCCCCACTTTTCT 58.587 50.000 0.00 0.00 0.00 2.52
583 793 1.069049 CAACAAGGCCCCACTTTTCTG 59.931 52.381 0.00 0.00 0.00 3.02
584 794 1.115326 ACAAGGCCCCACTTTTCTGC 61.115 55.000 0.00 0.00 0.00 4.26
585 795 0.829182 CAAGGCCCCACTTTTCTGCT 60.829 55.000 0.00 0.00 0.00 4.24
586 796 0.540597 AAGGCCCCACTTTTCTGCTC 60.541 55.000 0.00 0.00 0.00 4.26
587 797 1.075659 GGCCCCACTTTTCTGCTCT 59.924 57.895 0.00 0.00 0.00 4.09
588 798 0.328258 GGCCCCACTTTTCTGCTCTA 59.672 55.000 0.00 0.00 0.00 2.43
589 799 1.271926 GGCCCCACTTTTCTGCTCTAA 60.272 52.381 0.00 0.00 0.00 2.10
590 800 2.621668 GGCCCCACTTTTCTGCTCTAAT 60.622 50.000 0.00 0.00 0.00 1.73
591 801 3.092301 GCCCCACTTTTCTGCTCTAATT 58.908 45.455 0.00 0.00 0.00 1.40
592 802 3.511540 GCCCCACTTTTCTGCTCTAATTT 59.488 43.478 0.00 0.00 0.00 1.82
593 803 4.619160 GCCCCACTTTTCTGCTCTAATTTG 60.619 45.833 0.00 0.00 0.00 2.32
594 804 4.488879 CCCACTTTTCTGCTCTAATTTGC 58.511 43.478 0.00 0.00 0.00 3.68
595 805 4.022068 CCCACTTTTCTGCTCTAATTTGCA 60.022 41.667 0.00 0.00 37.63 4.08
603 813 4.519540 TGCTCTAATTTGCAGAAAACCC 57.480 40.909 0.00 0.00 34.84 4.11
604 814 4.151883 TGCTCTAATTTGCAGAAAACCCT 58.848 39.130 0.00 0.00 34.84 4.34
605 815 4.588528 TGCTCTAATTTGCAGAAAACCCTT 59.411 37.500 0.00 0.00 34.84 3.95
606 816 5.070313 TGCTCTAATTTGCAGAAAACCCTTT 59.930 36.000 0.00 0.00 34.84 3.11
607 817 5.406477 GCTCTAATTTGCAGAAAACCCTTTG 59.594 40.000 0.00 0.00 0.00 2.77
608 818 6.478512 TCTAATTTGCAGAAAACCCTTTGT 57.521 33.333 0.00 0.00 0.00 2.83
609 819 7.589958 TCTAATTTGCAGAAAACCCTTTGTA 57.410 32.000 0.00 0.00 0.00 2.41
610 820 8.189119 TCTAATTTGCAGAAAACCCTTTGTAT 57.811 30.769 0.00 0.00 0.00 2.29
611 821 8.303876 TCTAATTTGCAGAAAACCCTTTGTATC 58.696 33.333 0.00 0.00 0.00 2.24
612 822 6.670695 ATTTGCAGAAAACCCTTTGTATCT 57.329 33.333 0.00 0.00 0.00 1.98
613 823 6.478512 TTTGCAGAAAACCCTTTGTATCTT 57.521 33.333 0.00 0.00 0.00 2.40
614 824 5.705609 TGCAGAAAACCCTTTGTATCTTC 57.294 39.130 0.00 0.00 0.00 2.87
615 825 5.136828 TGCAGAAAACCCTTTGTATCTTCA 58.863 37.500 0.00 0.00 0.00 3.02
616 826 5.596361 TGCAGAAAACCCTTTGTATCTTCAA 59.404 36.000 0.00 0.00 0.00 2.69
617 827 6.097554 TGCAGAAAACCCTTTGTATCTTCAAA 59.902 34.615 0.00 0.00 36.18 2.69
618 828 6.983890 GCAGAAAACCCTTTGTATCTTCAAAA 59.016 34.615 0.00 0.00 36.96 2.44
619 829 7.042725 GCAGAAAACCCTTTGTATCTTCAAAAC 60.043 37.037 0.00 0.00 36.96 2.43
620 830 7.438160 CAGAAAACCCTTTGTATCTTCAAAACC 59.562 37.037 0.00 0.00 36.96 3.27
621 831 6.800072 AAACCCTTTGTATCTTCAAAACCA 57.200 33.333 0.00 0.00 36.96 3.67
622 832 6.994421 AACCCTTTGTATCTTCAAAACCAT 57.006 33.333 0.00 0.00 36.96 3.55
623 833 6.345096 ACCCTTTGTATCTTCAAAACCATG 57.655 37.500 0.00 0.00 36.96 3.66
624 834 5.245977 ACCCTTTGTATCTTCAAAACCATGG 59.754 40.000 11.19 11.19 36.96 3.66
625 835 5.480073 CCCTTTGTATCTTCAAAACCATGGA 59.520 40.000 21.47 0.00 36.96 3.41
626 836 6.350445 CCCTTTGTATCTTCAAAACCATGGAG 60.350 42.308 21.47 3.83 36.96 3.86
627 837 6.434028 CCTTTGTATCTTCAAAACCATGGAGA 59.566 38.462 21.47 10.10 39.25 3.71
628 838 7.039784 CCTTTGTATCTTCAAAACCATGGAGAA 60.040 37.037 21.47 14.83 38.42 2.87
629 839 8.421249 TTTGTATCTTCAAAACCATGGAGAAT 57.579 30.769 21.47 5.70 38.42 2.40
630 840 9.527157 TTTGTATCTTCAAAACCATGGAGAATA 57.473 29.630 21.47 9.65 38.42 1.75
631 841 9.699410 TTGTATCTTCAAAACCATGGAGAATAT 57.301 29.630 21.47 15.30 38.42 1.28
639 849 9.699410 TCAAAACCATGGAGAATATATTTGAGT 57.301 29.630 21.47 0.00 32.39 3.41
685 895 8.685838 ATATACACACACAACAAACCTAAAGT 57.314 30.769 0.00 0.00 0.00 2.66
686 896 5.054390 ACACACACAACAAACCTAAAGTG 57.946 39.130 0.00 0.00 0.00 3.16
687 897 4.521256 ACACACACAACAAACCTAAAGTGT 59.479 37.500 0.00 0.00 40.48 3.55
688 898 5.010213 ACACACACAACAAACCTAAAGTGTT 59.990 36.000 0.00 0.00 38.05 3.32
689 899 5.923684 CACACACAACAAACCTAAAGTGTTT 59.076 36.000 0.00 0.00 38.05 2.83
690 900 6.422400 CACACACAACAAACCTAAAGTGTTTT 59.578 34.615 0.00 0.00 38.05 2.43
691 901 6.987404 ACACACAACAAACCTAAAGTGTTTTT 59.013 30.769 0.00 0.00 38.05 1.94
766 976 6.910536 ATTCTACTTTAGATTCGTTGCAGG 57.089 37.500 0.00 0.00 34.22 4.85
767 977 4.755411 TCTACTTTAGATTCGTTGCAGGG 58.245 43.478 0.00 0.00 0.00 4.45
768 978 2.084546 ACTTTAGATTCGTTGCAGGGC 58.915 47.619 0.00 0.00 0.00 5.19
769 979 2.083774 CTTTAGATTCGTTGCAGGGCA 58.916 47.619 0.00 0.00 36.47 5.36
770 980 1.448985 TTAGATTCGTTGCAGGGCAC 58.551 50.000 0.00 0.00 38.71 5.01
771 981 0.739462 TAGATTCGTTGCAGGGCACG 60.739 55.000 2.24 2.24 38.71 5.34
772 982 2.031919 ATTCGTTGCAGGGCACGA 59.968 55.556 7.24 7.24 38.71 4.35
773 983 1.573829 GATTCGTTGCAGGGCACGAA 61.574 55.000 22.16 22.16 46.40 3.85
774 984 1.852067 ATTCGTTGCAGGGCACGAAC 61.852 55.000 22.31 0.00 45.81 3.95
775 985 3.276091 CGTTGCAGGGCACGAACA 61.276 61.111 2.49 0.00 38.71 3.18
776 986 2.331451 GTTGCAGGGCACGAACAC 59.669 61.111 0.00 0.00 38.71 3.32
777 987 2.124529 TTGCAGGGCACGAACACA 60.125 55.556 0.00 0.00 38.71 3.72
778 988 1.528076 TTGCAGGGCACGAACACAT 60.528 52.632 0.00 0.00 38.71 3.21
779 989 1.106351 TTGCAGGGCACGAACACATT 61.106 50.000 0.00 0.00 38.71 2.71
780 990 1.081242 GCAGGGCACGAACACATTG 60.081 57.895 0.00 0.00 0.00 2.82
781 991 1.081242 CAGGGCACGAACACATTGC 60.081 57.895 0.00 0.00 35.40 3.56
782 992 1.228245 AGGGCACGAACACATTGCT 60.228 52.632 0.00 0.00 36.46 3.91
783 993 0.036164 AGGGCACGAACACATTGCTA 59.964 50.000 0.00 0.00 36.46 3.49
784 994 0.447801 GGGCACGAACACATTGCTAG 59.552 55.000 0.00 0.00 36.46 3.42
785 995 1.156736 GGCACGAACACATTGCTAGT 58.843 50.000 0.00 0.00 36.46 2.57
786 996 1.128692 GGCACGAACACATTGCTAGTC 59.871 52.381 0.00 0.00 36.46 2.59
787 997 1.798223 GCACGAACACATTGCTAGTCA 59.202 47.619 0.00 0.00 33.26 3.41
788 998 2.416547 GCACGAACACATTGCTAGTCAT 59.583 45.455 0.00 0.00 33.26 3.06
789 999 3.616821 GCACGAACACATTGCTAGTCATA 59.383 43.478 0.00 0.00 33.26 2.15
790 1000 4.092821 GCACGAACACATTGCTAGTCATAA 59.907 41.667 0.00 0.00 33.26 1.90
791 1001 5.390461 GCACGAACACATTGCTAGTCATAAA 60.390 40.000 0.00 0.00 33.26 1.40
792 1002 6.598525 CACGAACACATTGCTAGTCATAAAA 58.401 36.000 0.00 0.00 0.00 1.52
793 1003 7.075121 CACGAACACATTGCTAGTCATAAAAA 58.925 34.615 0.00 0.00 0.00 1.94
820 1030 5.423610 TGGATAGTCTCTTCCTTCCTTGAAG 59.576 44.000 0.00 0.00 40.45 3.02
825 1035 2.481952 CTCTTCCTTCCTTGAAGCAACG 59.518 50.000 0.00 0.00 39.24 4.10
831 1042 1.774639 TCCTTGAAGCAACGACGTAC 58.225 50.000 0.00 0.00 0.00 3.67
857 1068 0.730840 GCGTAGACCCCAATTTTCCG 59.269 55.000 0.00 0.00 0.00 4.30
859 1070 2.277084 CGTAGACCCCAATTTTCCGAG 58.723 52.381 0.00 0.00 0.00 4.63
886 1097 2.874751 CGAAACATTCCCACGCCC 59.125 61.111 0.00 0.00 0.00 6.13
907 1118 0.826715 GCATCTGCCTGACTAGTGGA 59.173 55.000 0.00 0.00 34.31 4.02
910 1121 0.614979 TCTGCCTGACTAGTGGACCC 60.615 60.000 0.00 0.00 0.00 4.46
949 1189 1.993653 CATTGCTCCTCCCCAGTCA 59.006 57.895 0.00 0.00 0.00 3.41
1199 1532 1.134367 CATCCCGCACTTCTTCGTCTA 59.866 52.381 0.00 0.00 0.00 2.59
1229 1562 1.663173 GCCTCGGGCTCTACATCTC 59.337 63.158 7.58 0.00 46.69 2.75
1316 1680 4.022068 ACGAATTTGTGATCCAATTGCAGT 60.022 37.500 0.00 0.00 31.81 4.40
1421 1814 3.385193 ACAAGTGCATTTTAAGTGCCC 57.615 42.857 9.84 0.00 41.83 5.36
1435 1831 4.335400 AAGTGCCCCAAAACAAATACTG 57.665 40.909 0.00 0.00 0.00 2.74
1436 1832 2.037121 AGTGCCCCAAAACAAATACTGC 59.963 45.455 0.00 0.00 0.00 4.40
1571 2032 6.320171 CAAGCATAAAGACTTGGAGTGATTG 58.680 40.000 0.00 0.00 39.67 2.67
1617 2089 3.096092 TGTATTCCAAATGGCCCAAGAC 58.904 45.455 0.00 0.00 34.44 3.01
1997 2999 2.232941 TGTCTTCCCACCACGTATTCTC 59.767 50.000 0.00 0.00 0.00 2.87
2008 3010 2.425312 CACGTATTCTCTCTGCTCCTGT 59.575 50.000 0.00 0.00 0.00 4.00
2363 3878 6.678164 GCCAGCTAGCAGAATTACCTTTTTAC 60.678 42.308 18.83 0.00 0.00 2.01
2364 3879 6.599638 CCAGCTAGCAGAATTACCTTTTTACT 59.400 38.462 18.83 0.00 0.00 2.24
2797 6353 2.870372 GCGTCAGCATTCACCACC 59.130 61.111 0.00 0.00 44.35 4.61
3498 8634 0.816825 GACACGGGCAGCATCATCAT 60.817 55.000 0.00 0.00 0.00 2.45
3803 8963 4.321008 GCGTCGGTTCTATTCTATGGATGA 60.321 45.833 0.00 0.00 0.00 2.92
3843 9045 0.038166 GGGGGTCTTTGACATGCTGA 59.962 55.000 0.00 0.00 33.68 4.26
3867 9069 0.593128 GTGGTGCTGCGTTTCTGATT 59.407 50.000 0.00 0.00 0.00 2.57
3961 9163 2.038837 GCCTAGTGGGTGGCGTTTC 61.039 63.158 0.00 0.00 39.71 2.78
3990 9906 6.917477 TCATAATAAGACGCCATGCAAAATTC 59.083 34.615 0.00 0.00 0.00 2.17
4118 10056 6.767524 ACCTTCTCTAGTAGTCATGACAAG 57.232 41.667 27.02 17.43 0.00 3.16
4126 10064 9.509855 CTCTAGTAGTCATGACAAGAAATGTAC 57.490 37.037 27.02 16.77 44.12 2.90
4210 10148 3.748568 GGAAGAGTGCACGAAGAGAAATT 59.251 43.478 12.01 0.00 0.00 1.82
4236 10174 2.189594 TGAGAACTGCCAATGTGAGG 57.810 50.000 0.00 0.00 0.00 3.86
4325 12582 3.285484 CTCATTACAGCCCTCTTGCAAT 58.715 45.455 0.00 0.00 0.00 3.56
4386 12643 6.093909 CCCTTTTCAAAGAAAAGCACAACAAT 59.906 34.615 21.00 0.00 38.28 2.71
4418 12675 5.277058 CCACTTCTTGAGAGACTTTTTCACG 60.277 44.000 0.00 0.00 0.00 4.35
4463 12721 5.222631 ACCTCATGCGAAATTTCACTTTTC 58.777 37.500 17.99 0.91 0.00 2.29
4474 12732 8.028938 CGAAATTTCACTTTTCTGGACCATATT 58.971 33.333 17.99 0.00 32.18 1.28
4586 12844 1.251251 GGGTTGCTTCTTGTGCAGAT 58.749 50.000 0.00 0.00 41.71 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.203195 TGGTTGCTGCAAGTCGCT 60.203 55.556 16.53 0.00 43.06 4.93
70 71 1.138859 CAACTCGTCCATGGCCATAGA 59.861 52.381 20.30 14.93 0.00 1.98
177 178 3.628646 ATCTCCGCCAAGTGCCACC 62.629 63.158 0.00 0.00 36.24 4.61
178 179 2.045926 ATCTCCGCCAAGTGCCAC 60.046 61.111 0.00 0.00 36.24 5.01
179 180 2.046023 CATCTCCGCCAAGTGCCA 60.046 61.111 0.00 0.00 36.24 4.92
180 181 3.512516 GCATCTCCGCCAAGTGCC 61.513 66.667 0.00 0.00 36.24 5.01
181 182 3.869272 CGCATCTCCGCCAAGTGC 61.869 66.667 0.00 0.00 0.00 4.40
290 498 1.355720 CCTTTCCCCCATCTCTGTGTT 59.644 52.381 0.00 0.00 0.00 3.32
323 531 0.037232 CTTCTCCACACGTTCTCCCC 60.037 60.000 0.00 0.00 0.00 4.81
324 532 0.966920 TCTTCTCCACACGTTCTCCC 59.033 55.000 0.00 0.00 0.00 4.30
391 599 1.560860 GCTGCTGGACACGTGTCTTC 61.561 60.000 39.01 28.72 44.20 2.87
416 626 7.096230 CGGATGAAAACAAACAAATGTAAGTCC 60.096 37.037 0.00 0.00 32.02 3.85
418 628 6.699642 CCGGATGAAAACAAACAAATGTAAGT 59.300 34.615 0.00 0.00 32.02 2.24
424 634 6.155475 TCTTCCGGATGAAAACAAACAAAT 57.845 33.333 17.16 0.00 31.06 2.32
445 655 8.030106 TCTTTTATGGAAAACGTTTGTGTTTCT 58.970 29.630 15.46 0.00 41.01 2.52
447 657 8.710835 ATCTTTTATGGAAAACGTTTGTGTTT 57.289 26.923 15.46 0.00 43.60 2.83
468 678 9.404848 ACACATCATCATCATCAACTAAATCTT 57.595 29.630 0.00 0.00 0.00 2.40
469 679 8.975663 ACACATCATCATCATCAACTAAATCT 57.024 30.769 0.00 0.00 0.00 2.40
470 680 9.053840 AGACACATCATCATCATCAACTAAATC 57.946 33.333 0.00 0.00 0.00 2.17
471 681 8.837389 CAGACACATCATCATCATCAACTAAAT 58.163 33.333 0.00 0.00 0.00 1.40
472 682 7.825761 ACAGACACATCATCATCATCAACTAAA 59.174 33.333 0.00 0.00 0.00 1.85
473 683 7.333323 ACAGACACATCATCATCATCAACTAA 58.667 34.615 0.00 0.00 0.00 2.24
474 684 6.881570 ACAGACACATCATCATCATCAACTA 58.118 36.000 0.00 0.00 0.00 2.24
475 685 5.742063 ACAGACACATCATCATCATCAACT 58.258 37.500 0.00 0.00 0.00 3.16
476 686 5.583457 TGACAGACACATCATCATCATCAAC 59.417 40.000 0.00 0.00 0.00 3.18
477 687 5.736813 TGACAGACACATCATCATCATCAA 58.263 37.500 0.00 0.00 0.00 2.57
478 688 5.347620 TGACAGACACATCATCATCATCA 57.652 39.130 0.00 0.00 0.00 3.07
479 689 6.469139 GATGACAGACACATCATCATCATC 57.531 41.667 8.91 0.00 46.98 2.92
486 696 2.237893 TGGCAGATGACAGACACATCAT 59.762 45.455 0.00 0.00 44.29 2.45
487 697 1.624813 TGGCAGATGACAGACACATCA 59.375 47.619 0.00 0.00 44.29 3.07
488 698 2.391616 TGGCAGATGACAGACACATC 57.608 50.000 0.00 0.00 42.81 3.06
489 699 2.504585 AGATGGCAGATGACAGACACAT 59.495 45.455 0.00 0.00 35.91 3.21
490 700 1.904537 AGATGGCAGATGACAGACACA 59.095 47.619 0.00 0.00 35.91 3.72
491 701 2.168106 AGAGATGGCAGATGACAGACAC 59.832 50.000 0.00 0.00 35.91 3.67
492 702 2.167900 CAGAGATGGCAGATGACAGACA 59.832 50.000 0.00 0.00 35.91 3.41
493 703 2.429971 TCAGAGATGGCAGATGACAGAC 59.570 50.000 0.00 0.00 35.91 3.51
494 704 2.429971 GTCAGAGATGGCAGATGACAGA 59.570 50.000 15.17 0.00 39.97 3.41
495 705 2.483363 GGTCAGAGATGGCAGATGACAG 60.483 54.545 19.25 0.00 41.58 3.51
496 706 1.483827 GGTCAGAGATGGCAGATGACA 59.516 52.381 19.25 0.00 41.58 3.58
497 707 1.483827 TGGTCAGAGATGGCAGATGAC 59.516 52.381 12.89 12.89 39.59 3.06
498 708 1.870064 TGGTCAGAGATGGCAGATGA 58.130 50.000 0.00 0.00 0.00 2.92
499 709 2.932855 ATGGTCAGAGATGGCAGATG 57.067 50.000 0.00 0.00 0.00 2.90
500 710 4.229639 TCTAATGGTCAGAGATGGCAGAT 58.770 43.478 0.00 0.00 0.00 2.90
501 711 3.646534 TCTAATGGTCAGAGATGGCAGA 58.353 45.455 0.00 0.00 0.00 4.26
502 712 4.283978 AGATCTAATGGTCAGAGATGGCAG 59.716 45.833 0.00 0.00 30.01 4.85
503 713 4.040095 CAGATCTAATGGTCAGAGATGGCA 59.960 45.833 0.00 0.00 30.01 4.92
504 714 4.567971 CAGATCTAATGGTCAGAGATGGC 58.432 47.826 0.00 0.00 30.01 4.40
505 715 4.040095 TGCAGATCTAATGGTCAGAGATGG 59.960 45.833 0.00 0.00 30.01 3.51
506 716 5.211174 TGCAGATCTAATGGTCAGAGATG 57.789 43.478 0.00 0.00 30.01 2.90
507 717 5.781306 AGATGCAGATCTAATGGTCAGAGAT 59.219 40.000 0.00 0.00 37.15 2.75
508 718 5.146298 AGATGCAGATCTAATGGTCAGAGA 58.854 41.667 0.00 0.00 37.15 3.10
509 719 5.471556 AGATGCAGATCTAATGGTCAGAG 57.528 43.478 0.00 0.00 37.15 3.35
510 720 6.983906 TTAGATGCAGATCTAATGGTCAGA 57.016 37.500 5.80 0.00 43.42 3.27
518 728 5.357032 TCACAGTCGTTAGATGCAGATCTAA 59.643 40.000 5.80 5.80 45.23 2.10
519 729 4.881850 TCACAGTCGTTAGATGCAGATCTA 59.118 41.667 0.00 0.00 39.76 1.98
520 730 3.696548 TCACAGTCGTTAGATGCAGATCT 59.303 43.478 0.00 0.00 42.03 2.75
521 731 4.033990 TCACAGTCGTTAGATGCAGATC 57.966 45.455 0.00 0.00 0.00 2.75
522 732 3.181482 CCTCACAGTCGTTAGATGCAGAT 60.181 47.826 0.00 0.00 0.00 2.90
523 733 2.164422 CCTCACAGTCGTTAGATGCAGA 59.836 50.000 0.00 0.00 0.00 4.26
524 734 2.094494 ACCTCACAGTCGTTAGATGCAG 60.094 50.000 0.00 0.00 0.00 4.41
525 735 1.893137 ACCTCACAGTCGTTAGATGCA 59.107 47.619 0.00 0.00 0.00 3.96
526 736 2.656560 ACCTCACAGTCGTTAGATGC 57.343 50.000 0.00 0.00 0.00 3.91
527 737 4.106197 GCTTACCTCACAGTCGTTAGATG 58.894 47.826 0.00 0.00 0.00 2.90
528 738 4.017808 AGCTTACCTCACAGTCGTTAGAT 58.982 43.478 0.00 0.00 0.00 1.98
529 739 3.190744 CAGCTTACCTCACAGTCGTTAGA 59.809 47.826 0.00 0.00 0.00 2.10
530 740 3.057456 ACAGCTTACCTCACAGTCGTTAG 60.057 47.826 0.00 0.00 0.00 2.34
531 741 2.889045 ACAGCTTACCTCACAGTCGTTA 59.111 45.455 0.00 0.00 0.00 3.18
532 742 1.687123 ACAGCTTACCTCACAGTCGTT 59.313 47.619 0.00 0.00 0.00 3.85
533 743 1.000163 CACAGCTTACCTCACAGTCGT 60.000 52.381 0.00 0.00 0.00 4.34
534 744 1.670087 CCACAGCTTACCTCACAGTCG 60.670 57.143 0.00 0.00 0.00 4.18
535 745 1.941668 GCCACAGCTTACCTCACAGTC 60.942 57.143 0.00 0.00 35.50 3.51
536 746 0.035458 GCCACAGCTTACCTCACAGT 59.965 55.000 0.00 0.00 35.50 3.55
537 747 0.035317 TGCCACAGCTTACCTCACAG 59.965 55.000 0.00 0.00 40.80 3.66
538 748 0.692476 ATGCCACAGCTTACCTCACA 59.308 50.000 0.00 0.00 40.80 3.58
539 749 1.826385 AATGCCACAGCTTACCTCAC 58.174 50.000 0.00 0.00 40.80 3.51
540 750 2.584835 AAATGCCACAGCTTACCTCA 57.415 45.000 0.00 0.00 40.80 3.86
541 751 3.578688 CAAAAATGCCACAGCTTACCTC 58.421 45.455 0.00 0.00 40.80 3.85
542 752 2.289010 GCAAAAATGCCACAGCTTACCT 60.289 45.455 0.00 0.00 40.80 3.08
543 753 2.068519 GCAAAAATGCCACAGCTTACC 58.931 47.619 0.00 0.00 40.80 2.85
544 754 2.753296 TGCAAAAATGCCACAGCTTAC 58.247 42.857 0.00 0.00 40.80 2.34
545 755 3.129871 GTTGCAAAAATGCCACAGCTTA 58.870 40.909 0.00 0.00 40.80 3.09
546 756 1.941975 GTTGCAAAAATGCCACAGCTT 59.058 42.857 0.00 0.00 40.80 3.74
547 757 1.134461 TGTTGCAAAAATGCCACAGCT 60.134 42.857 0.00 0.00 35.87 4.24
548 758 1.297664 TGTTGCAAAAATGCCACAGC 58.702 45.000 0.00 0.00 35.87 4.40
549 759 2.288458 CCTTGTTGCAAAAATGCCACAG 59.712 45.455 1.65 3.75 40.66 3.66
550 760 2.286872 CCTTGTTGCAAAAATGCCACA 58.713 42.857 1.65 3.88 38.43 4.17
551 761 1.002576 GCCTTGTTGCAAAAATGCCAC 60.003 47.619 16.37 0.00 0.00 5.01
552 762 1.307097 GCCTTGTTGCAAAAATGCCA 58.693 45.000 16.37 0.00 0.00 4.92
553 763 0.592637 GGCCTTGTTGCAAAAATGCC 59.407 50.000 26.61 26.61 31.33 4.40
554 764 0.592637 GGGCCTTGTTGCAAAAATGC 59.407 50.000 18.34 18.34 0.00 3.56
555 765 1.237533 GGGGCCTTGTTGCAAAAATG 58.762 50.000 1.65 1.03 0.00 2.32
556 766 0.842635 TGGGGCCTTGTTGCAAAAAT 59.157 45.000 1.65 0.00 0.00 1.82
557 767 0.107459 GTGGGGCCTTGTTGCAAAAA 60.107 50.000 0.00 0.00 0.00 1.94
558 768 0.980231 AGTGGGGCCTTGTTGCAAAA 60.980 50.000 0.00 0.00 0.00 2.44
559 769 0.980231 AAGTGGGGCCTTGTTGCAAA 60.980 50.000 0.00 0.00 0.00 3.68
560 770 0.980231 AAAGTGGGGCCTTGTTGCAA 60.980 50.000 0.84 0.00 0.00 4.08
561 771 0.980231 AAAAGTGGGGCCTTGTTGCA 60.980 50.000 0.84 0.00 0.00 4.08
562 772 0.249868 GAAAAGTGGGGCCTTGTTGC 60.250 55.000 0.84 0.00 0.00 4.17
563 773 1.069049 CAGAAAAGTGGGGCCTTGTTG 59.931 52.381 0.84 0.00 0.00 3.33
564 774 1.413118 CAGAAAAGTGGGGCCTTGTT 58.587 50.000 0.84 0.00 0.00 2.83
565 775 1.115326 GCAGAAAAGTGGGGCCTTGT 61.115 55.000 0.84 0.00 0.00 3.16
566 776 0.829182 AGCAGAAAAGTGGGGCCTTG 60.829 55.000 0.84 0.00 0.00 3.61
567 777 0.540597 GAGCAGAAAAGTGGGGCCTT 60.541 55.000 0.84 0.00 0.00 4.35
568 778 1.075659 GAGCAGAAAAGTGGGGCCT 59.924 57.895 0.84 0.00 0.00 5.19
569 779 0.328258 TAGAGCAGAAAAGTGGGGCC 59.672 55.000 0.00 0.00 0.00 5.80
570 780 2.200373 TTAGAGCAGAAAAGTGGGGC 57.800 50.000 0.00 0.00 0.00 5.80
571 781 4.619160 GCAAATTAGAGCAGAAAAGTGGGG 60.619 45.833 0.00 0.00 0.00 4.96
572 782 4.022068 TGCAAATTAGAGCAGAAAAGTGGG 60.022 41.667 0.00 0.00 35.51 4.61
573 783 5.125100 TGCAAATTAGAGCAGAAAAGTGG 57.875 39.130 0.00 0.00 35.51 4.00
582 792 4.151883 AGGGTTTTCTGCAAATTAGAGCA 58.848 39.130 0.00 0.00 39.25 4.26
583 793 4.790765 AGGGTTTTCTGCAAATTAGAGC 57.209 40.909 0.00 0.00 0.00 4.09
584 794 6.515832 ACAAAGGGTTTTCTGCAAATTAGAG 58.484 36.000 0.00 0.00 0.00 2.43
585 795 6.478512 ACAAAGGGTTTTCTGCAAATTAGA 57.521 33.333 0.00 0.00 0.00 2.10
586 796 8.306761 AGATACAAAGGGTTTTCTGCAAATTAG 58.693 33.333 0.00 0.00 0.00 1.73
587 797 8.189119 AGATACAAAGGGTTTTCTGCAAATTA 57.811 30.769 0.00 0.00 0.00 1.40
588 798 7.066307 AGATACAAAGGGTTTTCTGCAAATT 57.934 32.000 0.00 0.00 0.00 1.82
589 799 6.670695 AGATACAAAGGGTTTTCTGCAAAT 57.329 33.333 0.00 0.00 0.00 2.32
590 800 6.097554 TGAAGATACAAAGGGTTTTCTGCAAA 59.902 34.615 0.00 0.00 28.40 3.68
591 801 5.596361 TGAAGATACAAAGGGTTTTCTGCAA 59.404 36.000 0.00 0.00 28.40 4.08
592 802 5.136828 TGAAGATACAAAGGGTTTTCTGCA 58.863 37.500 0.00 0.00 0.00 4.41
593 803 5.705609 TGAAGATACAAAGGGTTTTCTGC 57.294 39.130 0.00 0.00 0.00 4.26
594 804 7.438160 GGTTTTGAAGATACAAAGGGTTTTCTG 59.562 37.037 0.00 0.00 40.15 3.02
595 805 7.125053 TGGTTTTGAAGATACAAAGGGTTTTCT 59.875 33.333 0.00 0.00 40.15 2.52
596 806 7.269316 TGGTTTTGAAGATACAAAGGGTTTTC 58.731 34.615 0.00 0.00 40.15 2.29
597 807 7.189079 TGGTTTTGAAGATACAAAGGGTTTT 57.811 32.000 0.00 0.00 40.15 2.43
598 808 6.800072 TGGTTTTGAAGATACAAAGGGTTT 57.200 33.333 0.00 0.00 40.15 3.27
599 809 6.239572 CCATGGTTTTGAAGATACAAAGGGTT 60.240 38.462 2.57 0.00 40.15 4.11
600 810 5.245977 CCATGGTTTTGAAGATACAAAGGGT 59.754 40.000 2.57 0.00 40.15 4.34
601 811 5.480073 TCCATGGTTTTGAAGATACAAAGGG 59.520 40.000 12.58 0.00 40.15 3.95
602 812 6.434028 TCTCCATGGTTTTGAAGATACAAAGG 59.566 38.462 12.58 0.00 40.15 3.11
603 813 7.452880 TCTCCATGGTTTTGAAGATACAAAG 57.547 36.000 12.58 0.00 40.15 2.77
604 814 7.831691 TTCTCCATGGTTTTGAAGATACAAA 57.168 32.000 12.58 0.00 37.87 2.83
605 815 9.699410 ATATTCTCCATGGTTTTGAAGATACAA 57.301 29.630 12.58 0.00 0.00 2.41
613 823 9.699410 ACTCAAATATATTCTCCATGGTTTTGA 57.301 29.630 12.58 12.85 0.00 2.69
659 869 9.781633 ACTTTAGGTTTGTTGTGTGTGTATATA 57.218 29.630 0.00 0.00 0.00 0.86
660 870 8.564574 CACTTTAGGTTTGTTGTGTGTGTATAT 58.435 33.333 0.00 0.00 0.00 0.86
661 871 7.553402 ACACTTTAGGTTTGTTGTGTGTGTATA 59.447 33.333 0.00 0.00 37.28 1.47
662 872 6.376018 ACACTTTAGGTTTGTTGTGTGTGTAT 59.624 34.615 0.00 0.00 37.28 2.29
663 873 5.706369 ACACTTTAGGTTTGTTGTGTGTGTA 59.294 36.000 0.00 0.00 37.28 2.90
664 874 4.521256 ACACTTTAGGTTTGTTGTGTGTGT 59.479 37.500 0.00 0.00 37.28 3.72
665 875 5.054390 ACACTTTAGGTTTGTTGTGTGTG 57.946 39.130 0.00 0.00 37.28 3.82
666 876 5.715434 AACACTTTAGGTTTGTTGTGTGT 57.285 34.783 0.00 0.00 38.43 3.72
667 877 7.414814 AAAAACACTTTAGGTTTGTTGTGTG 57.585 32.000 0.00 0.00 38.40 3.82
740 950 9.046296 CCTGCAACGAATCTAAAGTAGAATAAT 57.954 33.333 0.00 0.00 38.50 1.28
741 951 7.494625 CCCTGCAACGAATCTAAAGTAGAATAA 59.505 37.037 0.00 0.00 38.50 1.40
742 952 6.984474 CCCTGCAACGAATCTAAAGTAGAATA 59.016 38.462 0.00 0.00 38.50 1.75
743 953 5.817816 CCCTGCAACGAATCTAAAGTAGAAT 59.182 40.000 0.00 0.00 38.50 2.40
744 954 5.175859 CCCTGCAACGAATCTAAAGTAGAA 58.824 41.667 0.00 0.00 38.50 2.10
745 955 4.755411 CCCTGCAACGAATCTAAAGTAGA 58.245 43.478 0.00 0.00 39.50 2.59
746 956 3.309954 GCCCTGCAACGAATCTAAAGTAG 59.690 47.826 0.00 0.00 0.00 2.57
747 957 3.267483 GCCCTGCAACGAATCTAAAGTA 58.733 45.455 0.00 0.00 0.00 2.24
748 958 2.084546 GCCCTGCAACGAATCTAAAGT 58.915 47.619 0.00 0.00 0.00 2.66
749 959 2.083774 TGCCCTGCAACGAATCTAAAG 58.916 47.619 0.00 0.00 34.76 1.85
750 960 1.810151 GTGCCCTGCAACGAATCTAAA 59.190 47.619 0.00 0.00 41.47 1.85
751 961 1.448985 GTGCCCTGCAACGAATCTAA 58.551 50.000 0.00 0.00 41.47 2.10
752 962 0.739462 CGTGCCCTGCAACGAATCTA 60.739 55.000 2.49 0.00 41.47 1.98
753 963 2.034879 CGTGCCCTGCAACGAATCT 61.035 57.895 2.49 0.00 41.47 2.40
754 964 1.573829 TTCGTGCCCTGCAACGAATC 61.574 55.000 17.60 0.00 42.19 2.52
755 965 1.599518 TTCGTGCCCTGCAACGAAT 60.600 52.632 17.60 0.00 42.19 3.34
756 966 2.203084 TTCGTGCCCTGCAACGAA 60.203 55.556 17.60 17.60 43.49 3.85
757 967 2.970324 GTTCGTGCCCTGCAACGA 60.970 61.111 7.24 7.24 41.47 3.85
758 968 3.276091 TGTTCGTGCCCTGCAACG 61.276 61.111 2.24 2.24 41.47 4.10
759 969 1.795170 ATGTGTTCGTGCCCTGCAAC 61.795 55.000 0.00 0.00 41.47 4.17
760 970 1.106351 AATGTGTTCGTGCCCTGCAA 61.106 50.000 0.00 0.00 41.47 4.08
761 971 1.528076 AATGTGTTCGTGCCCTGCA 60.528 52.632 0.00 0.00 35.60 4.41
762 972 1.081242 CAATGTGTTCGTGCCCTGC 60.081 57.895 0.00 0.00 0.00 4.85
763 973 1.081242 GCAATGTGTTCGTGCCCTG 60.081 57.895 0.00 0.00 0.00 4.45
764 974 0.036164 TAGCAATGTGTTCGTGCCCT 59.964 50.000 0.00 0.00 0.00 5.19
765 975 0.447801 CTAGCAATGTGTTCGTGCCC 59.552 55.000 0.00 0.00 0.00 5.36
766 976 1.128692 GACTAGCAATGTGTTCGTGCC 59.871 52.381 0.00 0.00 0.00 5.01
767 977 1.798223 TGACTAGCAATGTGTTCGTGC 59.202 47.619 0.00 0.00 0.00 5.34
768 978 5.778161 TTATGACTAGCAATGTGTTCGTG 57.222 39.130 0.00 0.00 0.00 4.35
769 979 6.795098 TTTTATGACTAGCAATGTGTTCGT 57.205 33.333 0.00 0.00 0.00 3.85
791 1001 7.277405 AGGAAGGAAGAGACTATCCATTTTT 57.723 36.000 8.96 0.00 38.23 1.94
792 1002 6.899892 AGGAAGGAAGAGACTATCCATTTT 57.100 37.500 8.96 0.00 38.23 1.82
793 1003 6.445139 TCAAGGAAGGAAGAGACTATCCATTT 59.555 38.462 8.96 0.00 38.23 2.32
794 1004 5.966935 TCAAGGAAGGAAGAGACTATCCATT 59.033 40.000 8.96 2.00 38.23 3.16
795 1005 5.533112 TCAAGGAAGGAAGAGACTATCCAT 58.467 41.667 8.96 0.00 38.23 3.41
796 1006 4.947883 TCAAGGAAGGAAGAGACTATCCA 58.052 43.478 8.96 0.00 38.23 3.41
797 1007 5.683770 GCTTCAAGGAAGGAAGAGACTATCC 60.684 48.000 7.97 0.00 43.46 2.59
798 1008 5.105146 TGCTTCAAGGAAGGAAGAGACTATC 60.105 44.000 7.97 0.00 43.46 2.08
799 1009 4.780021 TGCTTCAAGGAAGGAAGAGACTAT 59.220 41.667 7.97 0.00 43.46 2.12
800 1010 4.160329 TGCTTCAAGGAAGGAAGAGACTA 58.840 43.478 7.97 0.00 43.46 2.59
801 1011 2.975489 TGCTTCAAGGAAGGAAGAGACT 59.025 45.455 7.97 0.00 43.46 3.24
802 1012 3.409026 TGCTTCAAGGAAGGAAGAGAC 57.591 47.619 7.97 0.00 43.46 3.36
807 1017 2.218603 GTCGTTGCTTCAAGGAAGGAA 58.781 47.619 14.73 8.29 45.08 3.36
820 1030 3.177249 GGCTCCGTACGTCGTTGC 61.177 66.667 15.21 10.08 37.94 4.17
825 1035 3.780267 CTACGCGGCTCCGTACGTC 62.780 68.421 15.21 2.72 42.20 4.34
857 1068 3.120165 GGAATGTTTCGCTGTTCCTTCTC 60.120 47.826 0.00 0.00 37.67 2.87
859 1070 2.095212 GGGAATGTTTCGCTGTTCCTTC 60.095 50.000 0.00 0.00 39.96 3.46
867 1078 2.332654 GGCGTGGGAATGTTTCGCT 61.333 57.895 7.69 0.00 45.01 4.93
886 1097 1.472904 CCACTAGTCAGGCAGATGCAG 60.473 57.143 7.19 0.00 44.36 4.41
910 1121 2.579684 GAACGGAGGCCTACCAGCTG 62.580 65.000 10.20 6.78 39.06 4.24
919 1130 4.179579 GCAATGCGAACGGAGGCC 62.180 66.667 0.00 0.00 0.00 5.19
949 1189 4.640690 AGGCGAGTGGGGAGTGGT 62.641 66.667 0.00 0.00 0.00 4.16
1229 1562 3.939740 TGAAGGGGAAGATGAGAATGG 57.060 47.619 0.00 0.00 0.00 3.16
1316 1680 2.091333 AGAGAAAACCCTCCCTGCAAAA 60.091 45.455 0.00 0.00 33.76 2.44
1421 1814 3.364621 GTGCATCGCAGTATTTGTTTTGG 59.635 43.478 0.00 0.00 40.08 3.28
1435 1831 2.287915 ACTTCCGATAATTGTGCATCGC 59.712 45.455 3.32 0.00 42.05 4.58
1436 1832 3.804325 AGACTTCCGATAATTGTGCATCG 59.196 43.478 0.00 0.00 42.82 3.84
1468 1881 7.497249 ACGAAAATCTAATTCAGATCTCCCAAG 59.503 37.037 0.00 0.00 43.56 3.61
1571 2032 2.987232 ACGACCTTCTATTTTCAGGGC 58.013 47.619 0.00 0.00 31.44 5.19
1617 2089 1.321016 CGAATTTCACACTGCTTGCG 58.679 50.000 0.00 0.00 0.00 4.85
1997 2999 0.321021 AGCTGACAACAGGAGCAGAG 59.679 55.000 0.00 0.00 43.62 3.35
2135 3328 2.762535 TGGTGACTAACAAGCTAGCC 57.237 50.000 12.13 0.00 0.00 3.93
2523 5703 2.618709 GGACAAATCGGCCCTTTAGATG 59.381 50.000 0.00 0.00 0.00 2.90
2797 6353 0.896019 TGGTACCACCCCAAAATGCG 60.896 55.000 11.60 0.00 37.50 4.73
2810 7022 5.077564 AGAAAGAACCTTGGAATTGGTACC 58.922 41.667 4.43 4.43 35.17 3.34
3037 8065 7.598869 ACACACACACATCATACTAACAGTAAG 59.401 37.037 0.00 0.00 33.89 2.34
3498 8634 3.564235 ACTCGTCATACTTGTAACGCA 57.436 42.857 1.51 0.00 35.22 5.24
3803 8963 6.070656 CCCCTAAATACAACATCACATCCAT 58.929 40.000 0.00 0.00 0.00 3.41
3843 9045 0.031994 GAAACGCAGCACCACCAATT 59.968 50.000 0.00 0.00 0.00 2.32
3867 9069 1.876799 CCACACGGCTACACAAATGAA 59.123 47.619 0.00 0.00 0.00 2.57
3916 9118 4.518211 CCAAGAGACCAATTCATATGAGCC 59.482 45.833 5.39 0.00 0.00 4.70
3919 9121 4.166725 AGGCCAAGAGACCAATTCATATGA 59.833 41.667 5.01 0.00 0.00 2.15
3961 9163 4.692155 TGCATGGCGTCTTATTATGATGAG 59.308 41.667 0.00 0.00 0.00 2.90
3990 9906 5.882557 ACCTAACTATGATGCAAAAGAGTGG 59.117 40.000 0.00 0.00 0.00 4.00
4183 10121 1.939934 CTTCGTGCACTCTTCCAACAA 59.060 47.619 16.19 0.00 0.00 2.83
4188 10126 2.440539 TTCTCTTCGTGCACTCTTCC 57.559 50.000 16.19 0.00 0.00 3.46
4210 10148 4.696877 CACATTGGCAGTTCTCATGTCTTA 59.303 41.667 0.00 0.00 0.00 2.10
4258 10196 7.876068 AGCGATGGTTTCGATCCTATATTTTAA 59.124 33.333 8.30 0.00 44.62 1.52
4273 12523 2.076100 TGTCACATGAGCGATGGTTTC 58.924 47.619 0.00 0.00 36.23 2.78
4337 12594 5.016051 AGATCTACCATGATGTGTGTGTC 57.984 43.478 0.00 0.00 0.00 3.67
4386 12643 1.689813 TCTCAAGAAGTGGCAACCGTA 59.310 47.619 0.00 0.00 0.00 4.02
4553 12811 3.040477 AGCAACCCCAAATGGATATTGG 58.960 45.455 0.00 0.00 45.62 3.16
4586 12844 2.601067 CCACCCCAGCATGTGCAA 60.601 61.111 7.83 0.00 45.16 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.