Multiple sequence alignment - TraesCS3D01G474500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G474500 chr3D 100.000 2195 0 0 1 2195 575617322 575619516 0.000000e+00 4054.0
1 TraesCS3D01G474500 chr3D 80.952 84 10 3 1347 1430 274358892 274358969 6.540000e-06 62.1
2 TraesCS3D01G474500 chr3A 88.955 1005 40 27 591 1581 711093744 711094691 0.000000e+00 1175.0
3 TraesCS3D01G474500 chr3A 88.217 314 20 9 170 478 711091489 711091790 2.070000e-95 359.0
4 TraesCS3D01G474500 chr3A 90.909 231 17 4 1774 2002 711094789 711095017 7.610000e-80 307.0
5 TraesCS3D01G474500 chr3A 90.043 231 23 0 988 1218 359061548 359061318 1.270000e-77 300.0
6 TraesCS3D01G474500 chr3A 85.965 57 5 1 1377 1430 359061216 359061160 8.460000e-05 58.4
7 TraesCS3D01G474500 chr3B 85.984 849 40 29 725 1536 766333743 766332937 0.000000e+00 835.0
8 TraesCS3D01G474500 chr3B 88.976 254 14 8 215 460 766334270 766334023 3.540000e-78 302.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G474500 chr3D 575617322 575619516 2194 False 4054.000000 4054 100.000000 1 2195 1 chr3D.!!$F2 2194
1 TraesCS3D01G474500 chr3A 711091489 711095017 3528 False 613.666667 1175 89.360333 170 2002 3 chr3A.!!$F1 1832
2 TraesCS3D01G474500 chr3B 766332937 766334270 1333 True 568.500000 835 87.480000 215 1536 2 chr3B.!!$R1 1321

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
201 202 0.103208 GAGCCGGACACCTACAGATG 59.897 60.0 5.05 0.0 0.0 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1650 3639 0.038435 CGATCAGCCATCTCTCGCAT 60.038 55.0 0.0 0.0 0.0 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.240203 CGACCAAGAAAGCGCGAA 58.760 55.556 12.10 0.00 0.00 4.70
18 19 1.567537 CGACCAAGAAAGCGCGAAA 59.432 52.632 12.10 0.00 0.00 3.46
19 20 0.451135 CGACCAAGAAAGCGCGAAAG 60.451 55.000 12.10 0.00 0.00 2.62
20 21 0.586802 GACCAAGAAAGCGCGAAAGT 59.413 50.000 12.10 0.00 0.00 2.66
21 22 1.002792 GACCAAGAAAGCGCGAAAGTT 60.003 47.619 12.10 0.00 0.00 2.66
22 23 1.002792 ACCAAGAAAGCGCGAAAGTTC 60.003 47.619 12.10 6.85 0.00 3.01
23 24 1.002900 CCAAGAAAGCGCGAAAGTTCA 60.003 47.619 12.10 0.00 0.00 3.18
24 25 2.301787 CAAGAAAGCGCGAAAGTTCAG 58.698 47.619 12.10 0.36 0.00 3.02
25 26 1.583054 AGAAAGCGCGAAAGTTCAGT 58.417 45.000 12.10 0.00 0.00 3.41
26 27 1.940613 AGAAAGCGCGAAAGTTCAGTT 59.059 42.857 12.10 0.00 0.00 3.16
27 28 2.036933 GAAAGCGCGAAAGTTCAGTTG 58.963 47.619 12.10 0.00 0.00 3.16
28 29 0.307760 AAGCGCGAAAGTTCAGTTGG 59.692 50.000 12.10 0.00 0.00 3.77
29 30 0.531974 AGCGCGAAAGTTCAGTTGGA 60.532 50.000 12.10 0.00 0.00 3.53
30 31 0.110644 GCGCGAAAGTTCAGTTGGAG 60.111 55.000 12.10 0.00 0.00 3.86
31 32 1.217882 CGCGAAAGTTCAGTTGGAGT 58.782 50.000 0.00 0.00 0.00 3.85
32 33 1.597663 CGCGAAAGTTCAGTTGGAGTT 59.402 47.619 0.00 0.00 0.00 3.01
33 34 2.599848 CGCGAAAGTTCAGTTGGAGTTG 60.600 50.000 0.00 0.00 0.00 3.16
34 35 2.287009 GCGAAAGTTCAGTTGGAGTTGG 60.287 50.000 0.00 0.00 0.00 3.77
35 36 3.202906 CGAAAGTTCAGTTGGAGTTGGA 58.797 45.455 0.00 0.00 0.00 3.53
36 37 3.248602 CGAAAGTTCAGTTGGAGTTGGAG 59.751 47.826 0.00 0.00 0.00 3.86
37 38 3.933861 AAGTTCAGTTGGAGTTGGAGT 57.066 42.857 0.00 0.00 0.00 3.85
38 39 3.933861 AGTTCAGTTGGAGTTGGAGTT 57.066 42.857 0.00 0.00 0.00 3.01
39 40 3.545703 AGTTCAGTTGGAGTTGGAGTTG 58.454 45.455 0.00 0.00 0.00 3.16
40 41 2.618709 GTTCAGTTGGAGTTGGAGTTGG 59.381 50.000 0.00 0.00 0.00 3.77
41 42 2.123589 TCAGTTGGAGTTGGAGTTGGA 58.876 47.619 0.00 0.00 0.00 3.53
42 43 2.104792 TCAGTTGGAGTTGGAGTTGGAG 59.895 50.000 0.00 0.00 0.00 3.86
43 44 2.104792 CAGTTGGAGTTGGAGTTGGAGA 59.895 50.000 0.00 0.00 0.00 3.71
44 45 2.982488 AGTTGGAGTTGGAGTTGGAGAT 59.018 45.455 0.00 0.00 0.00 2.75
45 46 3.077359 GTTGGAGTTGGAGTTGGAGATG 58.923 50.000 0.00 0.00 0.00 2.90
46 47 1.003580 TGGAGTTGGAGTTGGAGATGC 59.996 52.381 0.00 0.00 0.00 3.91
47 48 1.280421 GGAGTTGGAGTTGGAGATGCT 59.720 52.381 0.00 0.00 0.00 3.79
48 49 2.626840 GAGTTGGAGTTGGAGATGCTC 58.373 52.381 0.00 0.00 0.00 4.26
49 50 2.235898 GAGTTGGAGTTGGAGATGCTCT 59.764 50.000 0.00 0.00 0.00 4.09
50 51 3.445008 AGTTGGAGTTGGAGATGCTCTA 58.555 45.455 0.00 0.00 0.00 2.43
51 52 3.450457 AGTTGGAGTTGGAGATGCTCTAG 59.550 47.826 0.00 0.00 0.00 2.43
52 53 2.392662 TGGAGTTGGAGATGCTCTAGG 58.607 52.381 0.00 0.00 0.00 3.02
53 54 1.691434 GGAGTTGGAGATGCTCTAGGG 59.309 57.143 0.00 0.00 0.00 3.53
54 55 1.069978 GAGTTGGAGATGCTCTAGGGC 59.930 57.143 7.96 7.96 0.00 5.19
55 56 0.107643 GTTGGAGATGCTCTAGGGCC 59.892 60.000 13.26 0.00 0.00 5.80
56 57 0.326522 TTGGAGATGCTCTAGGGCCA 60.327 55.000 13.26 0.00 0.00 5.36
57 58 0.326522 TGGAGATGCTCTAGGGCCAA 60.327 55.000 13.26 0.00 0.00 4.52
58 59 1.063183 GGAGATGCTCTAGGGCCAAT 58.937 55.000 13.26 0.00 0.00 3.16
59 60 1.003003 GGAGATGCTCTAGGGCCAATC 59.997 57.143 13.26 9.52 0.00 2.67
60 61 1.977129 GAGATGCTCTAGGGCCAATCT 59.023 52.381 15.47 15.47 30.86 2.40
61 62 2.371510 GAGATGCTCTAGGGCCAATCTT 59.628 50.000 16.37 3.58 29.18 2.40
62 63 2.371510 AGATGCTCTAGGGCCAATCTTC 59.628 50.000 13.26 0.00 0.00 2.87
63 64 1.885049 TGCTCTAGGGCCAATCTTCT 58.115 50.000 13.26 0.00 0.00 2.85
64 65 2.200081 TGCTCTAGGGCCAATCTTCTT 58.800 47.619 13.26 0.00 0.00 2.52
65 66 2.092753 TGCTCTAGGGCCAATCTTCTTG 60.093 50.000 13.26 0.00 0.00 3.02
66 67 2.171448 GCTCTAGGGCCAATCTTCTTGA 59.829 50.000 2.02 0.00 0.00 3.02
67 68 3.743899 GCTCTAGGGCCAATCTTCTTGAG 60.744 52.174 2.02 8.24 34.12 3.02
68 69 2.774234 TCTAGGGCCAATCTTCTTGAGG 59.226 50.000 6.18 0.00 0.00 3.86
69 70 1.376649 AGGGCCAATCTTCTTGAGGT 58.623 50.000 6.18 0.00 0.00 3.85
70 71 1.713078 AGGGCCAATCTTCTTGAGGTT 59.287 47.619 6.18 0.00 0.00 3.50
71 72 2.919602 AGGGCCAATCTTCTTGAGGTTA 59.080 45.455 6.18 0.00 0.00 2.85
72 73 3.529319 AGGGCCAATCTTCTTGAGGTTAT 59.471 43.478 6.18 0.00 0.00 1.89
73 74 3.633986 GGGCCAATCTTCTTGAGGTTATG 59.366 47.826 4.39 0.00 0.00 1.90
74 75 3.633986 GGCCAATCTTCTTGAGGTTATGG 59.366 47.826 0.00 0.00 0.00 2.74
75 76 4.526970 GCCAATCTTCTTGAGGTTATGGA 58.473 43.478 0.00 0.00 0.00 3.41
76 77 4.578105 GCCAATCTTCTTGAGGTTATGGAG 59.422 45.833 0.00 0.00 0.00 3.86
77 78 5.630069 GCCAATCTTCTTGAGGTTATGGAGA 60.630 44.000 0.00 0.00 0.00 3.71
78 79 6.054295 CCAATCTTCTTGAGGTTATGGAGAG 58.946 44.000 0.00 0.00 0.00 3.20
79 80 4.744795 TCTTCTTGAGGTTATGGAGAGC 57.255 45.455 0.00 0.00 0.00 4.09
80 81 4.096681 TCTTCTTGAGGTTATGGAGAGCA 58.903 43.478 0.00 0.00 0.00 4.26
81 82 4.532126 TCTTCTTGAGGTTATGGAGAGCAA 59.468 41.667 0.00 0.00 0.00 3.91
82 83 5.190528 TCTTCTTGAGGTTATGGAGAGCAAT 59.809 40.000 0.00 0.00 0.00 3.56
83 84 5.441718 TCTTGAGGTTATGGAGAGCAATT 57.558 39.130 0.00 0.00 0.00 2.32
84 85 5.819991 TCTTGAGGTTATGGAGAGCAATTT 58.180 37.500 0.00 0.00 0.00 1.82
85 86 5.649395 TCTTGAGGTTATGGAGAGCAATTTG 59.351 40.000 0.00 0.00 0.00 2.32
86 87 3.696051 TGAGGTTATGGAGAGCAATTTGC 59.304 43.478 13.55 13.55 45.46 3.68
97 98 2.851805 GCAATTTGCTACCTACTGGC 57.148 50.000 14.11 0.00 40.96 4.85
98 99 2.091541 GCAATTTGCTACCTACTGGCA 58.908 47.619 14.11 0.00 40.96 4.92
99 100 2.491693 GCAATTTGCTACCTACTGGCAA 59.508 45.455 14.11 0.00 42.97 4.52
100 101 3.131046 GCAATTTGCTACCTACTGGCAAT 59.869 43.478 14.11 0.00 43.86 3.56
101 102 4.675510 CAATTTGCTACCTACTGGCAATG 58.324 43.478 0.00 0.00 43.86 2.82
102 103 1.750193 TTGCTACCTACTGGCAATGC 58.250 50.000 0.00 0.00 40.38 3.56
116 117 3.591196 GCAATGCCATTGGTAAGTTCA 57.409 42.857 18.52 0.00 40.57 3.18
117 118 3.253230 GCAATGCCATTGGTAAGTTCAC 58.747 45.455 18.52 0.00 40.57 3.18
118 119 3.500982 CAATGCCATTGGTAAGTTCACG 58.499 45.455 9.62 0.00 36.63 4.35
119 120 1.529226 TGCCATTGGTAAGTTCACGG 58.471 50.000 4.26 0.00 0.00 4.94
120 121 0.170339 GCCATTGGTAAGTTCACGGC 59.830 55.000 4.26 0.00 0.00 5.68
121 122 1.821216 CCATTGGTAAGTTCACGGCT 58.179 50.000 0.00 0.00 0.00 5.52
122 123 1.468520 CCATTGGTAAGTTCACGGCTG 59.531 52.381 0.00 0.00 0.00 4.85
123 124 2.151202 CATTGGTAAGTTCACGGCTGT 58.849 47.619 0.00 0.00 0.00 4.40
124 125 1.873698 TTGGTAAGTTCACGGCTGTC 58.126 50.000 0.00 0.00 0.00 3.51
125 126 0.753867 TGGTAAGTTCACGGCTGTCA 59.246 50.000 0.00 0.00 0.00 3.58
126 127 1.145803 GGTAAGTTCACGGCTGTCAC 58.854 55.000 0.00 0.00 0.00 3.67
127 128 1.270147 GGTAAGTTCACGGCTGTCACT 60.270 52.381 0.00 0.00 0.00 3.41
128 129 2.480845 GTAAGTTCACGGCTGTCACTT 58.519 47.619 19.23 19.23 0.00 3.16
129 130 1.299541 AAGTTCACGGCTGTCACTTG 58.700 50.000 15.99 0.00 0.00 3.16
130 131 0.178068 AGTTCACGGCTGTCACTTGT 59.822 50.000 0.00 0.00 0.00 3.16
131 132 0.304705 GTTCACGGCTGTCACTTGTG 59.695 55.000 0.00 0.00 0.00 3.33
132 133 1.436195 TTCACGGCTGTCACTTGTGC 61.436 55.000 0.00 0.00 0.00 4.57
133 134 2.591715 ACGGCTGTCACTTGTGCC 60.592 61.111 0.00 0.00 41.76 5.01
135 136 3.357079 GGCTGTCACTTGTGCCGG 61.357 66.667 0.00 0.00 35.79 6.13
136 137 2.591715 GCTGTCACTTGTGCCGGT 60.592 61.111 1.90 0.00 0.00 5.28
137 138 2.896801 GCTGTCACTTGTGCCGGTG 61.897 63.158 1.90 0.00 35.06 4.94
138 139 2.896801 CTGTCACTTGTGCCGGTGC 61.897 63.158 1.90 0.00 33.91 5.01
139 140 4.012895 GTCACTTGTGCCGGTGCG 62.013 66.667 1.90 0.00 41.78 5.34
147 148 4.610714 TGCCGGTGCGCACTTGTA 62.611 61.111 36.84 24.73 41.78 2.41
148 149 4.084888 GCCGGTGCGCACTTGTAC 62.085 66.667 36.84 20.55 0.00 2.90
149 150 2.357034 CCGGTGCGCACTTGTACT 60.357 61.111 36.84 0.00 0.00 2.73
150 151 1.959226 CCGGTGCGCACTTGTACTT 60.959 57.895 36.84 0.00 0.00 2.24
151 152 1.204062 CGGTGCGCACTTGTACTTG 59.796 57.895 36.84 14.54 0.00 3.16
152 153 1.082104 GGTGCGCACTTGTACTTGC 60.082 57.895 36.84 15.57 35.26 4.01
153 154 1.507141 GGTGCGCACTTGTACTTGCT 61.507 55.000 36.84 0.00 36.54 3.91
154 155 0.384725 GTGCGCACTTGTACTTGCTG 60.385 55.000 32.55 7.30 36.54 4.41
155 156 0.531753 TGCGCACTTGTACTTGCTGA 60.532 50.000 5.66 0.00 36.54 4.26
156 157 0.164647 GCGCACTTGTACTTGCTGAG 59.835 55.000 0.30 0.00 36.54 3.35
157 158 0.792640 CGCACTTGTACTTGCTGAGG 59.207 55.000 11.32 0.00 36.54 3.86
158 159 1.873903 CGCACTTGTACTTGCTGAGGT 60.874 52.381 11.32 0.00 36.54 3.85
159 160 2.609491 CGCACTTGTACTTGCTGAGGTA 60.609 50.000 11.32 0.00 36.54 3.08
160 161 3.399330 GCACTTGTACTTGCTGAGGTAA 58.601 45.455 7.25 0.00 35.74 2.85
161 162 3.813166 GCACTTGTACTTGCTGAGGTAAA 59.187 43.478 7.25 0.00 35.74 2.01
162 163 4.319549 GCACTTGTACTTGCTGAGGTAAAC 60.320 45.833 7.25 0.00 35.74 2.01
163 164 4.814234 CACTTGTACTTGCTGAGGTAAACA 59.186 41.667 0.00 0.00 0.00 2.83
164 165 5.295787 CACTTGTACTTGCTGAGGTAAACAA 59.704 40.000 0.00 0.00 0.00 2.83
165 166 5.527582 ACTTGTACTTGCTGAGGTAAACAAG 59.472 40.000 9.62 9.62 43.99 3.16
166 167 3.813166 TGTACTTGCTGAGGTAAACAAGC 59.187 43.478 0.00 0.00 42.55 4.01
167 168 1.873591 ACTTGCTGAGGTAAACAAGCG 59.126 47.619 0.00 0.00 42.55 4.68
168 169 2.143122 CTTGCTGAGGTAAACAAGCGA 58.857 47.619 0.00 0.00 33.77 4.93
188 189 1.133025 AGCATTTGAAATTCGAGCCGG 59.867 47.619 0.00 0.00 0.00 6.13
193 194 0.672401 TGAAATTCGAGCCGGACACC 60.672 55.000 5.05 0.00 0.00 4.16
201 202 0.103208 GAGCCGGACACCTACAGATG 59.897 60.000 5.05 0.00 0.00 2.90
206 207 1.544246 CGGACACCTACAGATGTGTGA 59.456 52.381 5.61 0.00 45.24 3.58
207 208 2.671351 CGGACACCTACAGATGTGTGAC 60.671 54.545 5.61 4.55 45.24 3.67
208 209 2.353803 GGACACCTACAGATGTGTGACC 60.354 54.545 5.61 8.98 45.24 4.02
209 210 2.563179 GACACCTACAGATGTGTGACCT 59.437 50.000 5.61 0.00 45.24 3.85
210 211 2.300152 ACACCTACAGATGTGTGACCTG 59.700 50.000 5.61 0.00 43.69 4.00
211 212 1.902508 ACCTACAGATGTGTGACCTGG 59.097 52.381 5.61 3.02 37.52 4.45
212 213 1.406069 CCTACAGATGTGTGACCTGGC 60.406 57.143 5.61 0.00 37.52 4.85
233 234 3.737172 GGCGCGTTGTGGCTTGAT 61.737 61.111 8.43 0.00 35.70 2.57
247 248 2.632377 GCTTGATCGGAATGAGGTTCA 58.368 47.619 0.00 0.00 38.64 3.18
249 250 3.866651 CTTGATCGGAATGAGGTTCAGT 58.133 45.455 0.00 0.00 38.64 3.41
274 276 1.549170 AGGTAAACGTCGCCATCTTCT 59.451 47.619 0.00 0.00 0.00 2.85
275 277 2.756760 AGGTAAACGTCGCCATCTTCTA 59.243 45.455 0.00 0.00 0.00 2.10
276 278 2.856557 GGTAAACGTCGCCATCTTCTAC 59.143 50.000 0.00 0.00 0.00 2.59
277 279 3.428589 GGTAAACGTCGCCATCTTCTACT 60.429 47.826 0.00 0.00 0.00 2.57
297 299 3.935828 ACTAGCTTTCATTCGCTTTCTCC 59.064 43.478 0.00 0.00 37.68 3.71
336 338 6.050454 TCACAACCACGTAGTACAAAAATG 57.950 37.500 0.38 0.00 41.61 2.32
417 428 7.252612 TCATGAAGTGATCAAAGGTAGGTAA 57.747 36.000 0.00 0.00 42.54 2.85
422 433 8.383175 TGAAGTGATCAAAGGTAGGTAAGAATT 58.617 33.333 0.00 0.00 34.30 2.17
423 434 9.886132 GAAGTGATCAAAGGTAGGTAAGAATTA 57.114 33.333 0.00 0.00 0.00 1.40
484 2392 2.748843 TACGACGTACGCCGATGCA 61.749 57.895 30.19 9.32 46.94 3.96
486 2394 2.916556 CGACGTACGCCGATGCATG 61.917 63.158 19.58 0.00 40.70 4.06
490 2398 1.540607 CGTACGCCGATGCATGAGTC 61.541 60.000 2.46 0.00 39.56 3.36
516 2424 2.561373 GCCGGTGCGAAGGAAAAG 59.439 61.111 1.90 0.00 0.00 2.27
520 2428 1.335496 CCGGTGCGAAGGAAAAGAAAA 59.665 47.619 0.00 0.00 0.00 2.29
521 2429 2.604614 CCGGTGCGAAGGAAAAGAAAAG 60.605 50.000 0.00 0.00 0.00 2.27
523 2431 3.242936 CGGTGCGAAGGAAAAGAAAAGAA 60.243 43.478 0.00 0.00 0.00 2.52
524 2432 4.678622 GGTGCGAAGGAAAAGAAAAGAAA 58.321 39.130 0.00 0.00 0.00 2.52
526 2434 5.579119 GGTGCGAAGGAAAAGAAAAGAAAAA 59.421 36.000 0.00 0.00 0.00 1.94
527 2435 6.237835 GGTGCGAAGGAAAAGAAAAGAAAAAG 60.238 38.462 0.00 0.00 0.00 2.27
539 2447 5.358160 AGAAAAGAAAAAGATATCCAGCCGG 59.642 40.000 0.00 0.00 0.00 6.13
564 2472 4.973360 CGCCCAACAAACCGCGTG 62.973 66.667 4.92 0.00 39.78 5.34
566 2474 3.591835 CCCAACAAACCGCGTGCT 61.592 61.111 4.92 0.00 0.00 4.40
570 2478 0.725784 CAACAAACCGCGTGCTGATC 60.726 55.000 4.92 0.00 0.00 2.92
589 2497 1.377202 GATGAAAGGCTGGCCGTGA 60.377 57.895 5.93 0.00 41.95 4.35
750 2685 3.711842 CGCCGAAGCAACGCAAGA 61.712 61.111 0.00 0.00 39.83 3.02
752 2687 1.441016 GCCGAAGCAACGCAAGAAG 60.441 57.895 0.00 0.00 39.26 2.85
791 2737 4.363990 CCCTCGCTGTGCAGACGT 62.364 66.667 3.02 0.00 32.58 4.34
873 2825 2.356382 CGGCTCCGCAAAATAAATACCA 59.644 45.455 0.00 0.00 0.00 3.25
885 2837 2.672703 AAATACCACCTCCACCCCTA 57.327 50.000 0.00 0.00 0.00 3.53
910 2862 4.596585 CCCCACCACCACCACCAC 62.597 72.222 0.00 0.00 0.00 4.16
914 2866 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
956 2908 4.589374 ACTCCTATTCTAATCAACCCCTCG 59.411 45.833 0.00 0.00 0.00 4.63
957 2909 3.323979 TCCTATTCTAATCAACCCCTCGC 59.676 47.826 0.00 0.00 0.00 5.03
958 2910 2.640316 ATTCTAATCAACCCCTCGCC 57.360 50.000 0.00 0.00 0.00 5.54
1361 3325 2.202623 GCCTGCTACTGTCCGTCG 60.203 66.667 0.00 0.00 0.00 5.12
1362 3326 2.202623 CCTGCTACTGTCCGTCGC 60.203 66.667 0.00 0.00 35.08 5.19
1389 3363 7.606858 GGTGACGATGATGATGATGATTATT 57.393 36.000 0.00 0.00 0.00 1.40
1390 3364 8.707938 GGTGACGATGATGATGATGATTATTA 57.292 34.615 0.00 0.00 0.00 0.98
1391 3365 8.598924 GGTGACGATGATGATGATGATTATTAC 58.401 37.037 0.00 0.00 0.00 1.89
1430 3404 1.135199 ACCCGTGTGCTTGTAGATACG 60.135 52.381 0.00 0.00 0.00 3.06
1431 3405 1.135199 CCCGTGTGCTTGTAGATACGT 60.135 52.381 0.00 0.00 0.00 3.57
1432 3406 2.097954 CCCGTGTGCTTGTAGATACGTA 59.902 50.000 0.00 0.00 0.00 3.57
1433 3407 3.103738 CCGTGTGCTTGTAGATACGTAC 58.896 50.000 0.00 0.00 0.00 3.67
1481 3462 6.401903 GGTTTGATCTGCTGATATATTCGCTG 60.402 42.308 6.02 7.75 32.19 5.18
1482 3463 4.752146 TGATCTGCTGATATATTCGCTGG 58.248 43.478 6.02 5.17 32.19 4.85
1483 3464 3.599730 TCTGCTGATATATTCGCTGGG 57.400 47.619 11.43 0.00 0.00 4.45
1520 3509 3.876914 TGCTTTTCTGTCAGTCGTGATTT 59.123 39.130 0.00 0.00 34.36 2.17
1536 3525 4.263677 CGTGATTTCCTGAATTTTGATGCG 59.736 41.667 0.00 0.00 0.00 4.73
1542 3531 2.171567 CTGAATTTTGATGCGCGTGAG 58.828 47.619 6.97 0.00 0.00 3.51
1559 3548 2.096218 GTGAGCGTGGTGAATTCTGTTC 60.096 50.000 7.05 0.59 0.00 3.18
1563 3552 1.726791 CGTGGTGAATTCTGTTCCTCG 59.273 52.381 7.05 11.70 0.00 4.63
1568 3557 1.087501 GAATTCTGTTCCTCGCCACC 58.912 55.000 0.00 0.00 0.00 4.61
1583 3572 4.578898 ACCGCGACAGTGCACGAA 62.579 61.111 8.23 0.00 34.15 3.85
1585 3574 4.059459 CGCGACAGTGCACGAACC 62.059 66.667 12.01 1.39 34.15 3.62
1588 3577 0.736325 GCGACAGTGCACGAACCTAT 60.736 55.000 12.01 0.00 34.15 2.57
1589 3578 1.710013 CGACAGTGCACGAACCTATT 58.290 50.000 12.01 0.00 0.00 1.73
1592 3581 3.059188 CGACAGTGCACGAACCTATTTTT 60.059 43.478 12.01 0.00 0.00 1.94
1593 3582 4.464112 GACAGTGCACGAACCTATTTTTC 58.536 43.478 12.01 0.00 0.00 2.29
1594 3583 4.134563 ACAGTGCACGAACCTATTTTTCT 58.865 39.130 12.01 0.00 0.00 2.52
1597 3586 6.073222 ACAGTGCACGAACCTATTTTTCTTAG 60.073 38.462 12.01 0.00 0.00 2.18
1598 3587 5.086727 GTGCACGAACCTATTTTTCTTAGC 58.913 41.667 0.00 0.00 0.00 3.09
1599 3588 4.757657 TGCACGAACCTATTTTTCTTAGCA 59.242 37.500 0.00 0.00 0.00 3.49
1600 3589 5.106712 TGCACGAACCTATTTTTCTTAGCAG 60.107 40.000 0.00 0.00 0.00 4.24
1601 3590 5.121768 GCACGAACCTATTTTTCTTAGCAGA 59.878 40.000 0.00 0.00 0.00 4.26
1603 3592 7.626452 GCACGAACCTATTTTTCTTAGCAGAAT 60.626 37.037 0.00 0.00 38.89 2.40
1604 3593 7.905493 CACGAACCTATTTTTCTTAGCAGAATC 59.095 37.037 0.00 0.00 38.89 2.52
1605 3594 7.119997 CGAACCTATTTTTCTTAGCAGAATCG 58.880 38.462 0.00 0.00 38.89 3.34
1606 3595 7.201530 CGAACCTATTTTTCTTAGCAGAATCGT 60.202 37.037 0.00 0.00 38.89 3.73
1607 3596 7.923414 ACCTATTTTTCTTAGCAGAATCGTT 57.077 32.000 0.00 0.00 38.89 3.85
1608 3597 9.444600 AACCTATTTTTCTTAGCAGAATCGTTA 57.555 29.630 0.00 0.00 38.89 3.18
1615 3604 8.447787 TTTCTTAGCAGAATCGTTATTTTTGC 57.552 30.769 0.00 0.00 38.89 3.68
1618 3607 7.750458 TCTTAGCAGAATCGTTATTTTTGCTTG 59.250 33.333 6.74 2.50 40.49 4.01
1620 3609 4.622740 GCAGAATCGTTATTTTTGCTTGCT 59.377 37.500 0.00 0.00 35.12 3.91
1621 3610 5.220098 GCAGAATCGTTATTTTTGCTTGCTC 60.220 40.000 0.00 0.00 35.12 4.26
1622 3611 6.088824 CAGAATCGTTATTTTTGCTTGCTCT 58.911 36.000 0.00 0.00 0.00 4.09
1623 3612 6.033196 CAGAATCGTTATTTTTGCTTGCTCTG 59.967 38.462 0.00 0.00 0.00 3.35
1624 3613 3.564511 TCGTTATTTTTGCTTGCTCTGC 58.435 40.909 0.00 0.00 0.00 4.26
1625 3614 3.253188 TCGTTATTTTTGCTTGCTCTGCT 59.747 39.130 0.00 0.00 0.00 4.24
1626 3615 3.605486 CGTTATTTTTGCTTGCTCTGCTC 59.395 43.478 0.00 0.00 0.00 4.26
1627 3616 4.614535 CGTTATTTTTGCTTGCTCTGCTCT 60.615 41.667 0.00 0.00 0.00 4.09
1629 3618 2.267174 TTTTGCTTGCTCTGCTCTCT 57.733 45.000 0.00 0.00 0.00 3.10
1630 3619 2.267174 TTTGCTTGCTCTGCTCTCTT 57.733 45.000 0.00 0.00 0.00 2.85
1631 3620 1.805869 TTGCTTGCTCTGCTCTCTTC 58.194 50.000 0.00 0.00 0.00 2.87
1632 3621 0.683412 TGCTTGCTCTGCTCTCTTCA 59.317 50.000 0.00 0.00 0.00 3.02
1633 3622 1.337917 TGCTTGCTCTGCTCTCTTCAG 60.338 52.381 0.00 0.00 0.00 3.02
1634 3623 1.338011 GCTTGCTCTGCTCTCTTCAGT 60.338 52.381 0.00 0.00 33.48 3.41
1635 3624 2.609350 CTTGCTCTGCTCTCTTCAGTC 58.391 52.381 0.00 0.00 33.48 3.51
1636 3625 0.525311 TGCTCTGCTCTCTTCAGTCG 59.475 55.000 0.00 0.00 33.48 4.18
1637 3626 0.808125 GCTCTGCTCTCTTCAGTCGA 59.192 55.000 0.00 0.00 33.48 4.20
1638 3627 1.202177 GCTCTGCTCTCTTCAGTCGAG 60.202 57.143 0.00 0.00 33.48 4.04
1639 3628 2.355197 CTCTGCTCTCTTCAGTCGAGA 58.645 52.381 0.00 0.00 36.22 4.04
1640 3629 2.080693 TCTGCTCTCTTCAGTCGAGAC 58.919 52.381 0.00 0.00 34.11 3.36
1641 3630 1.809547 CTGCTCTCTTCAGTCGAGACA 59.190 52.381 5.99 0.00 34.11 3.41
1642 3631 2.227626 CTGCTCTCTTCAGTCGAGACAA 59.772 50.000 5.99 0.00 34.11 3.18
1643 3632 2.030717 TGCTCTCTTCAGTCGAGACAAC 60.031 50.000 5.99 0.00 34.11 3.32
1644 3633 2.030717 GCTCTCTTCAGTCGAGACAACA 60.031 50.000 5.99 0.00 34.11 3.33
1645 3634 3.560503 CTCTCTTCAGTCGAGACAACAC 58.439 50.000 5.99 0.00 34.11 3.32
1646 3635 2.293677 TCTCTTCAGTCGAGACAACACC 59.706 50.000 5.99 0.00 32.86 4.16
1647 3636 2.294791 CTCTTCAGTCGAGACAACACCT 59.705 50.000 5.99 0.00 0.00 4.00
1648 3637 3.483421 TCTTCAGTCGAGACAACACCTA 58.517 45.455 5.99 0.00 0.00 3.08
1649 3638 3.252701 TCTTCAGTCGAGACAACACCTAC 59.747 47.826 5.99 0.00 0.00 3.18
1650 3639 2.578786 TCAGTCGAGACAACACCTACA 58.421 47.619 5.99 0.00 0.00 2.74
1651 3640 3.154710 TCAGTCGAGACAACACCTACAT 58.845 45.455 5.99 0.00 0.00 2.29
1652 3641 3.057526 TCAGTCGAGACAACACCTACATG 60.058 47.826 5.99 0.00 0.00 3.21
1653 3642 1.993370 GTCGAGACAACACCTACATGC 59.007 52.381 0.00 0.00 0.00 4.06
1654 3643 0.992072 CGAGACAACACCTACATGCG 59.008 55.000 0.00 0.00 0.00 4.73
1655 3644 1.402325 CGAGACAACACCTACATGCGA 60.402 52.381 0.00 0.00 0.00 5.10
1656 3645 2.263077 GAGACAACACCTACATGCGAG 58.737 52.381 0.00 0.00 0.00 5.03
1657 3646 1.893137 AGACAACACCTACATGCGAGA 59.107 47.619 0.00 0.00 0.00 4.04
1658 3647 2.094494 AGACAACACCTACATGCGAGAG 60.094 50.000 0.00 0.00 0.00 3.20
1659 3648 1.893137 ACAACACCTACATGCGAGAGA 59.107 47.619 0.00 0.00 0.00 3.10
1660 3649 2.497675 ACAACACCTACATGCGAGAGAT 59.502 45.455 0.00 0.00 0.00 2.75
1661 3650 2.862536 CAACACCTACATGCGAGAGATG 59.137 50.000 0.00 0.00 0.00 2.90
1662 3651 1.410517 ACACCTACATGCGAGAGATGG 59.589 52.381 0.00 0.00 0.00 3.51
1663 3652 0.390860 ACCTACATGCGAGAGATGGC 59.609 55.000 0.00 0.00 0.00 4.40
1664 3653 0.678395 CCTACATGCGAGAGATGGCT 59.322 55.000 0.00 0.00 0.00 4.75
1665 3654 1.604947 CCTACATGCGAGAGATGGCTG 60.605 57.143 0.00 0.00 0.00 4.85
1666 3655 1.339291 CTACATGCGAGAGATGGCTGA 59.661 52.381 0.00 0.00 0.00 4.26
1667 3656 0.757512 ACATGCGAGAGATGGCTGAT 59.242 50.000 0.00 0.00 0.00 2.90
1668 3657 1.270199 ACATGCGAGAGATGGCTGATC 60.270 52.381 0.00 0.00 0.00 2.92
1669 3658 0.038435 ATGCGAGAGATGGCTGATCG 60.038 55.000 0.00 0.00 36.04 3.69
1670 3659 2.021039 GCGAGAGATGGCTGATCGC 61.021 63.158 1.91 1.91 43.91 4.58
1671 3660 1.728778 CGAGAGATGGCTGATCGCG 60.729 63.158 0.00 0.00 40.44 5.87
1672 3661 2.021039 GAGAGATGGCTGATCGCGC 61.021 63.158 0.00 0.00 40.44 6.86
1673 3662 2.279717 GAGATGGCTGATCGCGCA 60.280 61.111 8.75 0.00 40.44 6.09
1674 3663 1.884464 GAGATGGCTGATCGCGCAA 60.884 57.895 8.75 0.00 40.44 4.85
1675 3664 2.098842 GAGATGGCTGATCGCGCAAC 62.099 60.000 8.75 0.00 40.44 4.17
1676 3665 2.436469 ATGGCTGATCGCGCAACA 60.436 55.556 8.75 2.86 40.44 3.33
1677 3666 2.370824 GATGGCTGATCGCGCAACAG 62.371 60.000 8.75 14.20 40.44 3.16
1678 3667 2.815211 GGCTGATCGCGCAACAGA 60.815 61.111 23.02 7.34 40.44 3.41
1679 3668 2.176273 GGCTGATCGCGCAACAGAT 61.176 57.895 23.02 11.61 40.44 2.90
1680 3669 1.011463 GCTGATCGCGCAACAGATG 60.011 57.895 23.02 0.13 34.07 2.90
1681 3670 1.423721 GCTGATCGCGCAACAGATGA 61.424 55.000 23.02 5.62 34.07 2.92
1682 3671 1.001624 CTGATCGCGCAACAGATGAA 58.998 50.000 16.74 0.00 34.07 2.57
1683 3672 1.394572 CTGATCGCGCAACAGATGAAA 59.605 47.619 16.74 0.00 34.07 2.69
1684 3673 1.803555 TGATCGCGCAACAGATGAAAA 59.196 42.857 8.75 0.00 0.00 2.29
1685 3674 2.169179 GATCGCGCAACAGATGAAAAC 58.831 47.619 8.75 0.00 0.00 2.43
1686 3675 0.237235 TCGCGCAACAGATGAAAACC 59.763 50.000 8.75 0.00 0.00 3.27
1687 3676 0.238289 CGCGCAACAGATGAAAACCT 59.762 50.000 8.75 0.00 0.00 3.50
1688 3677 1.463056 CGCGCAACAGATGAAAACCTA 59.537 47.619 8.75 0.00 0.00 3.08
1689 3678 2.474526 CGCGCAACAGATGAAAACCTAG 60.475 50.000 8.75 0.00 0.00 3.02
1690 3679 2.742053 GCGCAACAGATGAAAACCTAGA 59.258 45.455 0.30 0.00 0.00 2.43
1691 3680 3.375299 GCGCAACAGATGAAAACCTAGAT 59.625 43.478 0.30 0.00 0.00 1.98
1744 3733 7.639113 AGAAACTCCACATGTTTGAGTAAAA 57.361 32.000 21.97 0.00 38.36 1.52
1773 3762 3.796443 CGACTGCTGCAGCGCAAT 61.796 61.111 32.11 17.93 45.83 3.56
1774 3763 2.455291 CGACTGCTGCAGCGCAATA 61.455 57.895 32.11 14.66 45.83 1.90
1775 3764 1.796151 GACTGCTGCAGCGCAATAA 59.204 52.632 32.11 13.90 45.83 1.40
1776 3765 0.168788 GACTGCTGCAGCGCAATAAA 59.831 50.000 32.11 13.14 45.83 1.40
1777 3766 0.109597 ACTGCTGCAGCGCAATAAAC 60.110 50.000 32.11 4.71 45.83 2.01
1778 3767 0.109643 CTGCTGCAGCGCAATAAACA 60.110 50.000 32.11 11.63 45.83 2.83
1779 3768 0.527113 TGCTGCAGCGCAATAAACAT 59.473 45.000 32.11 0.00 45.83 2.71
1780 3769 1.742268 TGCTGCAGCGCAATAAACATA 59.258 42.857 32.11 8.56 45.83 2.29
1781 3770 2.223317 TGCTGCAGCGCAATAAACATAG 60.223 45.455 32.11 0.00 45.83 2.23
1793 3782 5.278169 GCAATAAACATAGTGATGGGCTGAG 60.278 44.000 0.00 0.00 37.39 3.35
1812 3801 4.387343 CAGGGGCCATGGGTTGCT 62.387 66.667 15.13 0.00 0.00 3.91
1850 3839 1.971167 GCCTGCCGTGAATTGACCA 60.971 57.895 0.00 0.00 0.00 4.02
1875 3864 5.222631 GGTCATTTTCTTGTTGCGATTCTT 58.777 37.500 0.00 0.00 0.00 2.52
1945 3935 0.394352 CCGCCATTCTACCCAGCTTT 60.394 55.000 0.00 0.00 0.00 3.51
1946 3936 1.017387 CGCCATTCTACCCAGCTTTC 58.983 55.000 0.00 0.00 0.00 2.62
1952 3942 3.634397 TTCTACCCAGCTTTCCATCAG 57.366 47.619 0.00 0.00 0.00 2.90
1959 3949 1.738350 CAGCTTTCCATCAGCAGTCAG 59.262 52.381 0.00 0.00 39.99 3.51
1972 3962 1.405105 GCAGTCAGCACAAGGAAACAA 59.595 47.619 0.00 0.00 44.79 2.83
1973 3963 2.035066 GCAGTCAGCACAAGGAAACAAT 59.965 45.455 0.00 0.00 44.79 2.71
1982 3972 5.476599 AGCACAAGGAAACAATATAACAGCA 59.523 36.000 0.00 0.00 0.00 4.41
1983 3973 6.153340 AGCACAAGGAAACAATATAACAGCAT 59.847 34.615 0.00 0.00 0.00 3.79
1988 3978 9.853555 CAAGGAAACAATATAACAGCATAACAA 57.146 29.630 0.00 0.00 0.00 2.83
2002 3992 6.713903 ACAGCATAACAATCCATTCCATAGAG 59.286 38.462 0.00 0.00 0.00 2.43
2003 3993 6.713903 CAGCATAACAATCCATTCCATAGAGT 59.286 38.462 0.00 0.00 0.00 3.24
2004 3994 7.879677 CAGCATAACAATCCATTCCATAGAGTA 59.120 37.037 0.00 0.00 0.00 2.59
2005 3995 8.609483 AGCATAACAATCCATTCCATAGAGTAT 58.391 33.333 0.00 0.00 0.00 2.12
2006 3996 9.890629 GCATAACAATCCATTCCATAGAGTATA 57.109 33.333 0.00 0.00 0.00 1.47
2009 3999 7.872061 ACAATCCATTCCATAGAGTATACCA 57.128 36.000 0.00 0.00 0.00 3.25
2010 4000 7.911651 ACAATCCATTCCATAGAGTATACCAG 58.088 38.462 0.00 0.00 0.00 4.00
2011 4001 7.734865 ACAATCCATTCCATAGAGTATACCAGA 59.265 37.037 0.00 0.00 0.00 3.86
2012 4002 7.969690 ATCCATTCCATAGAGTATACCAGAG 57.030 40.000 0.00 0.00 0.00 3.35
2013 4003 7.103745 TCCATTCCATAGAGTATACCAGAGA 57.896 40.000 0.00 0.00 0.00 3.10
2014 4004 6.948886 TCCATTCCATAGAGTATACCAGAGAC 59.051 42.308 0.00 0.00 0.00 3.36
2015 4005 6.153680 CCATTCCATAGAGTATACCAGAGACC 59.846 46.154 0.00 0.00 0.00 3.85
2016 4006 5.258216 TCCATAGAGTATACCAGAGACCC 57.742 47.826 0.00 0.00 0.00 4.46
2017 4007 4.668335 TCCATAGAGTATACCAGAGACCCA 59.332 45.833 0.00 0.00 0.00 4.51
2018 4008 5.135533 TCCATAGAGTATACCAGAGACCCAA 59.864 44.000 0.00 0.00 0.00 4.12
2019 4009 5.244178 CCATAGAGTATACCAGAGACCCAAC 59.756 48.000 0.00 0.00 0.00 3.77
2020 4010 4.332683 AGAGTATACCAGAGACCCAACA 57.667 45.455 0.00 0.00 0.00 3.33
2021 4011 4.684724 AGAGTATACCAGAGACCCAACAA 58.315 43.478 0.00 0.00 0.00 2.83
2022 4012 5.091552 AGAGTATACCAGAGACCCAACAAA 58.908 41.667 0.00 0.00 0.00 2.83
2023 4013 5.726793 AGAGTATACCAGAGACCCAACAAAT 59.273 40.000 0.00 0.00 0.00 2.32
2024 4014 5.745227 AGTATACCAGAGACCCAACAAATG 58.255 41.667 0.00 0.00 0.00 2.32
2025 4015 4.657814 ATACCAGAGACCCAACAAATGT 57.342 40.909 0.00 0.00 0.00 2.71
2026 4016 5.772393 ATACCAGAGACCCAACAAATGTA 57.228 39.130 0.00 0.00 0.00 2.29
2027 4017 4.447138 ACCAGAGACCCAACAAATGTAA 57.553 40.909 0.00 0.00 0.00 2.41
2028 4018 4.798882 ACCAGAGACCCAACAAATGTAAA 58.201 39.130 0.00 0.00 0.00 2.01
2029 4019 5.393866 ACCAGAGACCCAACAAATGTAAAT 58.606 37.500 0.00 0.00 0.00 1.40
2030 4020 5.476945 ACCAGAGACCCAACAAATGTAAATC 59.523 40.000 0.00 0.00 0.00 2.17
2031 4021 5.476599 CCAGAGACCCAACAAATGTAAATCA 59.523 40.000 0.00 0.00 0.00 2.57
2032 4022 6.349611 CCAGAGACCCAACAAATGTAAATCAG 60.350 42.308 0.00 0.00 0.00 2.90
2033 4023 6.207417 CAGAGACCCAACAAATGTAAATCAGT 59.793 38.462 0.00 0.00 0.00 3.41
2034 4024 6.431234 AGAGACCCAACAAATGTAAATCAGTC 59.569 38.462 0.00 0.00 0.00 3.51
2035 4025 6.306987 AGACCCAACAAATGTAAATCAGTCT 58.693 36.000 0.00 0.00 0.00 3.24
2036 4026 6.431234 AGACCCAACAAATGTAAATCAGTCTC 59.569 38.462 0.00 0.00 0.00 3.36
2037 4027 6.306987 ACCCAACAAATGTAAATCAGTCTCT 58.693 36.000 0.00 0.00 0.00 3.10
2038 4028 6.777580 ACCCAACAAATGTAAATCAGTCTCTT 59.222 34.615 0.00 0.00 0.00 2.85
2039 4029 7.287696 ACCCAACAAATGTAAATCAGTCTCTTT 59.712 33.333 0.00 0.00 0.00 2.52
2040 4030 7.809806 CCCAACAAATGTAAATCAGTCTCTTTC 59.190 37.037 0.00 0.00 0.00 2.62
2041 4031 7.809806 CCAACAAATGTAAATCAGTCTCTTTCC 59.190 37.037 0.00 0.00 0.00 3.13
2042 4032 8.571336 CAACAAATGTAAATCAGTCTCTTTCCT 58.429 33.333 0.00 0.00 0.00 3.36
2043 4033 8.697507 ACAAATGTAAATCAGTCTCTTTCCTT 57.302 30.769 0.00 0.00 0.00 3.36
2044 4034 8.787852 ACAAATGTAAATCAGTCTCTTTCCTTC 58.212 33.333 0.00 0.00 0.00 3.46
2045 4035 7.602517 AATGTAAATCAGTCTCTTTCCTTCG 57.397 36.000 0.00 0.00 0.00 3.79
2046 4036 6.097915 TGTAAATCAGTCTCTTTCCTTCGT 57.902 37.500 0.00 0.00 0.00 3.85
2047 4037 5.926542 TGTAAATCAGTCTCTTTCCTTCGTG 59.073 40.000 0.00 0.00 0.00 4.35
2048 4038 4.873746 AATCAGTCTCTTTCCTTCGTGA 57.126 40.909 0.00 0.00 0.00 4.35
2049 4039 3.924918 TCAGTCTCTTTCCTTCGTGAG 57.075 47.619 0.00 0.00 0.00 3.51
2050 4040 2.029828 TCAGTCTCTTTCCTTCGTGAGC 60.030 50.000 0.00 0.00 0.00 4.26
2051 4041 1.964223 AGTCTCTTTCCTTCGTGAGCA 59.036 47.619 0.00 0.00 0.00 4.26
2052 4042 2.062519 GTCTCTTTCCTTCGTGAGCAC 58.937 52.381 0.00 0.00 0.00 4.40
2053 4043 1.000955 TCTCTTTCCTTCGTGAGCACC 59.999 52.381 0.00 0.00 0.00 5.01
2054 4044 0.319555 TCTTTCCTTCGTGAGCACCG 60.320 55.000 0.00 0.00 0.00 4.94
2055 4045 1.291877 CTTTCCTTCGTGAGCACCGG 61.292 60.000 0.00 0.00 0.00 5.28
2056 4046 3.876589 TTCCTTCGTGAGCACCGGC 62.877 63.158 0.00 0.00 41.61 6.13
2057 4047 4.680237 CCTTCGTGAGCACCGGCA 62.680 66.667 0.00 0.00 44.61 5.69
2058 4048 3.114616 CTTCGTGAGCACCGGCAG 61.115 66.667 0.00 0.00 44.61 4.85
2059 4049 4.680237 TTCGTGAGCACCGGCAGG 62.680 66.667 0.00 0.00 44.61 4.85
2071 4061 2.484742 CCGGCAGGTTTAGGTTAGTT 57.515 50.000 0.00 0.00 0.00 2.24
2072 4062 2.081462 CCGGCAGGTTTAGGTTAGTTG 58.919 52.381 0.00 0.00 0.00 3.16
2073 4063 2.289819 CCGGCAGGTTTAGGTTAGTTGA 60.290 50.000 0.00 0.00 0.00 3.18
2074 4064 3.606687 CGGCAGGTTTAGGTTAGTTGAT 58.393 45.455 0.00 0.00 0.00 2.57
2075 4065 4.383335 CCGGCAGGTTTAGGTTAGTTGATA 60.383 45.833 0.00 0.00 0.00 2.15
2076 4066 5.180271 CGGCAGGTTTAGGTTAGTTGATAA 58.820 41.667 0.00 0.00 0.00 1.75
2077 4067 5.293569 CGGCAGGTTTAGGTTAGTTGATAAG 59.706 44.000 0.00 0.00 0.00 1.73
2078 4068 6.412214 GGCAGGTTTAGGTTAGTTGATAAGA 58.588 40.000 0.00 0.00 0.00 2.10
2079 4069 7.054751 GGCAGGTTTAGGTTAGTTGATAAGAT 58.945 38.462 0.00 0.00 0.00 2.40
2080 4070 7.226918 GGCAGGTTTAGGTTAGTTGATAAGATC 59.773 40.741 0.00 0.00 0.00 2.75
2081 4071 7.769044 GCAGGTTTAGGTTAGTTGATAAGATCA 59.231 37.037 0.00 0.00 37.55 2.92
2082 4072 9.838339 CAGGTTTAGGTTAGTTGATAAGATCAT 57.162 33.333 0.00 0.00 39.39 2.45
2087 4077 7.573968 AGGTTAGTTGATAAGATCATTTGCC 57.426 36.000 0.00 0.00 39.39 4.52
2088 4078 7.118723 AGGTTAGTTGATAAGATCATTTGCCA 58.881 34.615 0.00 0.00 39.39 4.92
2089 4079 7.781693 AGGTTAGTTGATAAGATCATTTGCCAT 59.218 33.333 0.00 0.00 39.39 4.40
2090 4080 8.416329 GGTTAGTTGATAAGATCATTTGCCATT 58.584 33.333 0.00 0.00 39.39 3.16
2091 4081 9.807649 GTTAGTTGATAAGATCATTTGCCATTT 57.192 29.630 0.00 0.00 39.39 2.32
2092 4082 9.806203 TTAGTTGATAAGATCATTTGCCATTTG 57.194 29.630 0.00 0.00 39.39 2.32
2093 4083 7.270047 AGTTGATAAGATCATTTGCCATTTGG 58.730 34.615 0.00 0.00 39.39 3.28
2095 4085 5.453621 TGATAAGATCATTTGCCATTTGGCC 60.454 40.000 18.54 0.00 46.99 5.36
2096 4086 7.597948 TGATAAGATCATTTGCCATTTGGCCT 61.598 38.462 18.54 3.98 46.99 5.19
2097 4087 8.999552 TGATAAGATCATTTGCCATTTGGCCTT 62.000 37.037 18.54 13.83 46.99 4.35
2106 4096 3.302365 CCATTTGGCCTTGTGTTGTAG 57.698 47.619 3.32 0.00 0.00 2.74
2107 4097 2.610232 CCATTTGGCCTTGTGTTGTAGC 60.610 50.000 3.32 0.00 0.00 3.58
2108 4098 0.665835 TTTGGCCTTGTGTTGTAGCG 59.334 50.000 3.32 0.00 0.00 4.26
2109 4099 0.464735 TTGGCCTTGTGTTGTAGCGT 60.465 50.000 3.32 0.00 0.00 5.07
2110 4100 0.882927 TGGCCTTGTGTTGTAGCGTC 60.883 55.000 3.32 0.00 0.00 5.19
2111 4101 0.602905 GGCCTTGTGTTGTAGCGTCT 60.603 55.000 0.00 0.00 0.00 4.18
2112 4102 0.790814 GCCTTGTGTTGTAGCGTCTC 59.209 55.000 0.00 0.00 0.00 3.36
2113 4103 1.872237 GCCTTGTGTTGTAGCGTCTCA 60.872 52.381 0.00 0.00 0.00 3.27
2114 4104 2.688507 CCTTGTGTTGTAGCGTCTCAT 58.311 47.619 0.00 0.00 0.00 2.90
2115 4105 2.413112 CCTTGTGTTGTAGCGTCTCATG 59.587 50.000 0.00 0.00 0.00 3.07
2116 4106 2.812358 TGTGTTGTAGCGTCTCATGT 57.188 45.000 0.00 0.00 0.00 3.21
2117 4107 2.672714 TGTGTTGTAGCGTCTCATGTC 58.327 47.619 0.00 0.00 0.00 3.06
2118 4108 2.035321 TGTGTTGTAGCGTCTCATGTCA 59.965 45.455 0.00 0.00 0.00 3.58
2119 4109 2.408704 GTGTTGTAGCGTCTCATGTCAC 59.591 50.000 0.00 0.00 0.00 3.67
2120 4110 2.035321 TGTTGTAGCGTCTCATGTCACA 59.965 45.455 0.00 0.00 0.00 3.58
2121 4111 3.254060 GTTGTAGCGTCTCATGTCACAT 58.746 45.455 0.00 0.00 0.00 3.21
2122 4112 4.082463 TGTTGTAGCGTCTCATGTCACATA 60.082 41.667 0.00 0.00 0.00 2.29
2123 4113 4.918810 TGTAGCGTCTCATGTCACATAT 57.081 40.909 0.00 0.00 0.00 1.78
2124 4114 5.262588 TGTAGCGTCTCATGTCACATATT 57.737 39.130 0.00 0.00 0.00 1.28
2125 4115 5.281727 TGTAGCGTCTCATGTCACATATTC 58.718 41.667 0.00 0.00 0.00 1.75
2126 4116 3.722147 AGCGTCTCATGTCACATATTCC 58.278 45.455 0.00 0.00 0.00 3.01
2127 4117 3.132824 AGCGTCTCATGTCACATATTCCA 59.867 43.478 0.00 0.00 0.00 3.53
2128 4118 3.492383 GCGTCTCATGTCACATATTCCAG 59.508 47.826 0.00 0.00 0.00 3.86
2129 4119 4.686972 CGTCTCATGTCACATATTCCAGT 58.313 43.478 0.00 0.00 0.00 4.00
2130 4120 4.505556 CGTCTCATGTCACATATTCCAGTG 59.494 45.833 0.00 0.00 37.10 3.66
2131 4121 5.423015 GTCTCATGTCACATATTCCAGTGT 58.577 41.667 0.00 0.00 37.07 3.55
2132 4122 5.877012 GTCTCATGTCACATATTCCAGTGTT 59.123 40.000 0.00 0.00 37.07 3.32
2133 4123 6.372659 GTCTCATGTCACATATTCCAGTGTTT 59.627 38.462 0.00 0.00 37.07 2.83
2134 4124 6.942005 TCTCATGTCACATATTCCAGTGTTTT 59.058 34.615 0.00 0.00 37.07 2.43
2135 4125 6.912082 TCATGTCACATATTCCAGTGTTTTG 58.088 36.000 0.00 0.00 37.07 2.44
2136 4126 6.489700 TCATGTCACATATTCCAGTGTTTTGT 59.510 34.615 0.00 0.00 37.07 2.83
2137 4127 6.707440 TGTCACATATTCCAGTGTTTTGTT 57.293 33.333 0.00 0.00 37.07 2.83
2138 4128 7.106439 TGTCACATATTCCAGTGTTTTGTTT 57.894 32.000 0.00 0.00 37.07 2.83
2139 4129 6.977502 TGTCACATATTCCAGTGTTTTGTTTG 59.022 34.615 0.00 0.00 37.07 2.93
2140 4130 5.982516 TCACATATTCCAGTGTTTTGTTTGC 59.017 36.000 0.00 0.00 37.07 3.68
2141 4131 4.981674 ACATATTCCAGTGTTTTGTTTGCG 59.018 37.500 0.00 0.00 0.00 4.85
2142 4132 3.518634 ATTCCAGTGTTTTGTTTGCGT 57.481 38.095 0.00 0.00 0.00 5.24
2143 4133 3.305398 TTCCAGTGTTTTGTTTGCGTT 57.695 38.095 0.00 0.00 0.00 4.84
2144 4134 2.600731 TCCAGTGTTTTGTTTGCGTTG 58.399 42.857 0.00 0.00 0.00 4.10
2145 4135 2.229062 TCCAGTGTTTTGTTTGCGTTGA 59.771 40.909 0.00 0.00 0.00 3.18
2146 4136 3.119316 TCCAGTGTTTTGTTTGCGTTGAT 60.119 39.130 0.00 0.00 0.00 2.57
2147 4137 3.242712 CCAGTGTTTTGTTTGCGTTGATC 59.757 43.478 0.00 0.00 0.00 2.92
2148 4138 3.856521 CAGTGTTTTGTTTGCGTTGATCA 59.143 39.130 0.00 0.00 0.00 2.92
2149 4139 4.503734 CAGTGTTTTGTTTGCGTTGATCAT 59.496 37.500 0.00 0.00 0.00 2.45
2150 4140 5.005586 CAGTGTTTTGTTTGCGTTGATCATT 59.994 36.000 0.00 0.00 0.00 2.57
2151 4141 5.005586 AGTGTTTTGTTTGCGTTGATCATTG 59.994 36.000 0.00 0.00 0.00 2.82
2152 4142 4.203077 GTTTTGTTTGCGTTGATCATTGC 58.797 39.130 11.62 11.62 0.00 3.56
2153 4143 2.063156 TGTTTGCGTTGATCATTGCC 57.937 45.000 14.87 3.33 0.00 4.52
2154 4144 1.339291 TGTTTGCGTTGATCATTGCCA 59.661 42.857 14.87 3.82 0.00 4.92
2155 4145 2.223900 TGTTTGCGTTGATCATTGCCAA 60.224 40.909 14.87 8.99 0.00 4.52
2156 4146 2.995258 GTTTGCGTTGATCATTGCCAAT 59.005 40.909 14.87 0.00 0.00 3.16
2157 4147 2.281140 TGCGTTGATCATTGCCAATG 57.719 45.000 11.24 11.24 40.28 2.82
2158 4148 0.925466 GCGTTGATCATTGCCAATGC 59.075 50.000 12.62 15.11 44.61 3.56
2159 4149 1.193644 CGTTGATCATTGCCAATGCG 58.806 50.000 12.62 6.30 41.78 4.73
2160 4150 1.202166 CGTTGATCATTGCCAATGCGA 60.202 47.619 12.62 0.00 41.78 5.10
2161 4151 2.456989 GTTGATCATTGCCAATGCGAG 58.543 47.619 12.62 0.00 41.78 5.03
2162 4152 0.382873 TGATCATTGCCAATGCGAGC 59.617 50.000 12.62 0.11 41.78 5.03
2163 4153 0.318445 GATCATTGCCAATGCGAGCC 60.318 55.000 12.62 0.00 41.78 4.70
2164 4154 0.754217 ATCATTGCCAATGCGAGCCT 60.754 50.000 12.62 0.00 41.78 4.58
2165 4155 1.226859 CATTGCCAATGCGAGCCTG 60.227 57.895 4.18 0.00 41.78 4.85
2166 4156 3.072486 ATTGCCAATGCGAGCCTGC 62.072 57.895 0.00 0.00 41.78 4.85
2169 4159 3.869272 CCAATGCGAGCCTGCGTC 61.869 66.667 0.00 0.00 37.81 5.19
2170 4160 3.869272 CAATGCGAGCCTGCGTCC 61.869 66.667 0.00 0.00 37.81 4.79
2183 4173 3.814268 CGTCCGGGCTTGGCAATG 61.814 66.667 3.66 0.00 0.00 2.82
2184 4174 3.451894 GTCCGGGCTTGGCAATGG 61.452 66.667 0.00 0.83 0.00 3.16
2188 4178 3.149648 GGGCTTGGCAATGGCGAT 61.150 61.111 0.00 0.00 42.47 4.58
2189 4179 2.105528 GGCTTGGCAATGGCGATG 59.894 61.111 0.00 0.00 42.47 3.84
2190 4180 2.584143 GCTTGGCAATGGCGATGC 60.584 61.111 0.00 5.82 40.55 3.91
2191 4181 2.886610 CTTGGCAATGGCGATGCA 59.113 55.556 14.96 0.00 45.60 3.96
2192 4182 1.226859 CTTGGCAATGGCGATGCAG 60.227 57.895 14.96 2.71 45.60 4.41
2193 4183 1.940883 CTTGGCAATGGCGATGCAGT 61.941 55.000 14.96 0.00 45.60 4.40
2194 4184 1.534336 TTGGCAATGGCGATGCAGTT 61.534 50.000 14.96 0.00 45.60 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.451135 CTTTCGCGCTTTCTTGGTCG 60.451 55.000 5.56 0.00 0.00 4.79
1 2 0.586802 ACTTTCGCGCTTTCTTGGTC 59.413 50.000 5.56 0.00 0.00 4.02
2 3 1.002792 GAACTTTCGCGCTTTCTTGGT 60.003 47.619 5.56 0.00 0.00 3.67
3 4 1.002900 TGAACTTTCGCGCTTTCTTGG 60.003 47.619 5.56 0.00 0.00 3.61
4 5 2.286418 ACTGAACTTTCGCGCTTTCTTG 60.286 45.455 5.56 1.86 0.00 3.02
5 6 1.940613 ACTGAACTTTCGCGCTTTCTT 59.059 42.857 5.56 0.00 0.00 2.52
6 7 1.583054 ACTGAACTTTCGCGCTTTCT 58.417 45.000 5.56 0.00 0.00 2.52
7 8 2.036933 CAACTGAACTTTCGCGCTTTC 58.963 47.619 5.56 1.37 0.00 2.62
8 9 1.268539 CCAACTGAACTTTCGCGCTTT 60.269 47.619 5.56 0.00 0.00 3.51
9 10 0.307760 CCAACTGAACTTTCGCGCTT 59.692 50.000 5.56 0.00 0.00 4.68
10 11 0.531974 TCCAACTGAACTTTCGCGCT 60.532 50.000 5.56 0.00 0.00 5.92
11 12 0.110644 CTCCAACTGAACTTTCGCGC 60.111 55.000 0.00 0.00 0.00 6.86
12 13 1.217882 ACTCCAACTGAACTTTCGCG 58.782 50.000 0.00 0.00 0.00 5.87
13 14 2.287009 CCAACTCCAACTGAACTTTCGC 60.287 50.000 0.00 0.00 0.00 4.70
14 15 3.202906 TCCAACTCCAACTGAACTTTCG 58.797 45.455 0.00 0.00 0.00 3.46
15 16 4.200092 ACTCCAACTCCAACTGAACTTTC 58.800 43.478 0.00 0.00 0.00 2.62
16 17 4.236527 ACTCCAACTCCAACTGAACTTT 57.763 40.909 0.00 0.00 0.00 2.66
17 18 3.933861 ACTCCAACTCCAACTGAACTT 57.066 42.857 0.00 0.00 0.00 2.66
18 19 3.545703 CAACTCCAACTCCAACTGAACT 58.454 45.455 0.00 0.00 0.00 3.01
19 20 2.618709 CCAACTCCAACTCCAACTGAAC 59.381 50.000 0.00 0.00 0.00 3.18
20 21 2.507886 TCCAACTCCAACTCCAACTGAA 59.492 45.455 0.00 0.00 0.00 3.02
21 22 2.104792 CTCCAACTCCAACTCCAACTGA 59.895 50.000 0.00 0.00 0.00 3.41
22 23 2.104792 TCTCCAACTCCAACTCCAACTG 59.895 50.000 0.00 0.00 0.00 3.16
23 24 2.408565 TCTCCAACTCCAACTCCAACT 58.591 47.619 0.00 0.00 0.00 3.16
24 25 2.930826 TCTCCAACTCCAACTCCAAC 57.069 50.000 0.00 0.00 0.00 3.77
25 26 2.553028 GCATCTCCAACTCCAACTCCAA 60.553 50.000 0.00 0.00 0.00 3.53
26 27 1.003580 GCATCTCCAACTCCAACTCCA 59.996 52.381 0.00 0.00 0.00 3.86
27 28 1.280421 AGCATCTCCAACTCCAACTCC 59.720 52.381 0.00 0.00 0.00 3.85
28 29 2.626840 GAGCATCTCCAACTCCAACTC 58.373 52.381 0.00 0.00 0.00 3.01
29 30 2.777832 GAGCATCTCCAACTCCAACT 57.222 50.000 0.00 0.00 0.00 3.16
42 43 2.371510 AGAAGATTGGCCCTAGAGCATC 59.628 50.000 0.00 0.00 0.00 3.91
43 44 2.416638 AGAAGATTGGCCCTAGAGCAT 58.583 47.619 0.00 0.00 0.00 3.79
44 45 1.885049 AGAAGATTGGCCCTAGAGCA 58.115 50.000 0.00 0.00 0.00 4.26
45 46 2.171448 TCAAGAAGATTGGCCCTAGAGC 59.829 50.000 0.00 0.00 0.00 4.09
46 47 3.181456 CCTCAAGAAGATTGGCCCTAGAG 60.181 52.174 0.00 0.00 0.00 2.43
47 48 2.774234 CCTCAAGAAGATTGGCCCTAGA 59.226 50.000 0.00 0.00 0.00 2.43
48 49 2.507471 ACCTCAAGAAGATTGGCCCTAG 59.493 50.000 0.00 0.00 0.00 3.02
49 50 2.562296 ACCTCAAGAAGATTGGCCCTA 58.438 47.619 0.00 0.00 0.00 3.53
50 51 1.376649 ACCTCAAGAAGATTGGCCCT 58.623 50.000 0.00 0.00 0.00 5.19
51 52 2.222227 AACCTCAAGAAGATTGGCCC 57.778 50.000 0.00 0.00 0.00 5.80
52 53 3.633986 CCATAACCTCAAGAAGATTGGCC 59.366 47.826 0.00 0.00 0.00 5.36
53 54 4.526970 TCCATAACCTCAAGAAGATTGGC 58.473 43.478 0.00 0.00 0.00 4.52
54 55 5.994250 TCTCCATAACCTCAAGAAGATTGG 58.006 41.667 0.00 0.00 0.00 3.16
55 56 5.526846 GCTCTCCATAACCTCAAGAAGATTG 59.473 44.000 0.00 0.00 0.00 2.67
56 57 5.190528 TGCTCTCCATAACCTCAAGAAGATT 59.809 40.000 0.00 0.00 0.00 2.40
57 58 4.718774 TGCTCTCCATAACCTCAAGAAGAT 59.281 41.667 0.00 0.00 0.00 2.40
58 59 4.096681 TGCTCTCCATAACCTCAAGAAGA 58.903 43.478 0.00 0.00 0.00 2.87
59 60 4.478206 TGCTCTCCATAACCTCAAGAAG 57.522 45.455 0.00 0.00 0.00 2.85
60 61 4.908601 TTGCTCTCCATAACCTCAAGAA 57.091 40.909 0.00 0.00 0.00 2.52
61 62 5.441718 AATTGCTCTCCATAACCTCAAGA 57.558 39.130 0.00 0.00 0.00 3.02
62 63 5.678107 GCAAATTGCTCTCCATAACCTCAAG 60.678 44.000 11.19 0.00 40.96 3.02
63 64 4.158394 GCAAATTGCTCTCCATAACCTCAA 59.842 41.667 11.19 0.00 40.96 3.02
64 65 3.696051 GCAAATTGCTCTCCATAACCTCA 59.304 43.478 11.19 0.00 40.96 3.86
65 66 4.298744 GCAAATTGCTCTCCATAACCTC 57.701 45.455 11.19 0.00 40.96 3.85
74 75 5.744134 GCCAGTAGGTAGCAAATTGCTCTC 61.744 50.000 24.88 17.42 43.85 3.20
75 76 3.933061 GCCAGTAGGTAGCAAATTGCTCT 60.933 47.826 24.88 17.89 43.85 4.09
76 77 2.356069 GCCAGTAGGTAGCAAATTGCTC 59.644 50.000 24.88 15.10 43.85 4.26
77 78 2.290896 TGCCAGTAGGTAGCAAATTGCT 60.291 45.455 24.56 24.56 46.02 3.91
78 79 2.091541 TGCCAGTAGGTAGCAAATTGC 58.908 47.619 10.41 10.41 39.72 3.56
84 85 3.476740 GCATTGCCAGTAGGTAGCA 57.523 52.632 0.00 0.00 37.19 3.49
96 97 3.253230 GTGAACTTACCAATGGCATTGC 58.747 45.455 30.21 17.13 38.92 3.56
97 98 3.500982 CGTGAACTTACCAATGGCATTG 58.499 45.455 29.00 29.00 39.94 2.82
98 99 2.491693 CCGTGAACTTACCAATGGCATT 59.508 45.455 6.96 6.96 0.00 3.56
99 100 2.091541 CCGTGAACTTACCAATGGCAT 58.908 47.619 0.00 0.00 0.00 4.40
100 101 1.529226 CCGTGAACTTACCAATGGCA 58.471 50.000 0.00 0.00 0.00 4.92
101 102 0.170339 GCCGTGAACTTACCAATGGC 59.830 55.000 0.00 0.00 32.60 4.40
102 103 1.468520 CAGCCGTGAACTTACCAATGG 59.531 52.381 0.00 0.00 0.00 3.16
103 104 2.151202 ACAGCCGTGAACTTACCAATG 58.849 47.619 0.00 0.00 0.00 2.82
104 105 2.224426 TGACAGCCGTGAACTTACCAAT 60.224 45.455 0.00 0.00 0.00 3.16
105 106 1.139256 TGACAGCCGTGAACTTACCAA 59.861 47.619 0.00 0.00 0.00 3.67
106 107 0.753867 TGACAGCCGTGAACTTACCA 59.246 50.000 0.00 0.00 0.00 3.25
107 108 1.145803 GTGACAGCCGTGAACTTACC 58.854 55.000 0.00 0.00 0.00 2.85
108 109 2.150397 AGTGACAGCCGTGAACTTAC 57.850 50.000 0.00 0.00 0.00 2.34
109 110 2.159014 ACAAGTGACAGCCGTGAACTTA 60.159 45.455 0.00 0.00 34.46 2.24
110 111 1.299541 CAAGTGACAGCCGTGAACTT 58.700 50.000 0.00 0.00 35.70 2.66
111 112 0.178068 ACAAGTGACAGCCGTGAACT 59.822 50.000 0.00 0.00 0.00 3.01
112 113 0.304705 CACAAGTGACAGCCGTGAAC 59.695 55.000 0.00 0.00 0.00 3.18
113 114 1.436195 GCACAAGTGACAGCCGTGAA 61.436 55.000 4.04 0.00 0.00 3.18
114 115 1.887242 GCACAAGTGACAGCCGTGA 60.887 57.895 4.04 0.00 0.00 4.35
115 116 2.633657 GCACAAGTGACAGCCGTG 59.366 61.111 4.04 0.00 0.00 4.94
116 117 2.591715 GGCACAAGTGACAGCCGT 60.592 61.111 4.04 0.00 38.82 5.68
118 119 3.357079 CCGGCACAAGTGACAGCC 61.357 66.667 6.88 0.00 38.95 4.85
119 120 2.591715 ACCGGCACAAGTGACAGC 60.592 61.111 0.00 0.00 38.95 4.40
120 121 2.896801 GCACCGGCACAAGTGACAG 61.897 63.158 0.00 0.00 38.95 3.51
121 122 2.899838 GCACCGGCACAAGTGACA 60.900 61.111 0.00 0.00 38.95 3.58
122 123 4.012895 CGCACCGGCACAAGTGAC 62.013 66.667 0.00 0.00 41.24 3.67
130 131 4.610714 TACAAGTGCGCACCGGCA 62.611 61.111 35.51 16.89 41.24 5.69
131 132 4.084888 GTACAAGTGCGCACCGGC 62.085 66.667 35.51 19.62 0.00 6.13
132 133 1.959226 AAGTACAAGTGCGCACCGG 60.959 57.895 35.51 28.57 0.00 5.28
133 134 1.204062 CAAGTACAAGTGCGCACCG 59.796 57.895 35.51 28.25 0.00 4.94
134 135 1.082104 GCAAGTACAAGTGCGCACC 60.082 57.895 35.51 20.37 0.00 5.01
135 136 0.384725 CAGCAAGTACAAGTGCGCAC 60.385 55.000 32.79 32.79 45.62 5.34
136 137 0.531753 TCAGCAAGTACAAGTGCGCA 60.532 50.000 5.66 5.66 45.62 6.09
137 138 0.164647 CTCAGCAAGTACAAGTGCGC 59.835 55.000 0.00 0.00 45.62 6.09
138 139 0.792640 CCTCAGCAAGTACAAGTGCG 59.207 55.000 9.65 6.28 45.62 5.34
139 140 1.884235 ACCTCAGCAAGTACAAGTGC 58.116 50.000 7.84 7.84 41.22 4.40
140 141 4.814234 TGTTTACCTCAGCAAGTACAAGTG 59.186 41.667 0.00 0.00 0.00 3.16
141 142 5.031066 TGTTTACCTCAGCAAGTACAAGT 57.969 39.130 0.00 0.00 0.00 3.16
142 143 5.560953 GCTTGTTTACCTCAGCAAGTACAAG 60.561 44.000 0.00 0.00 40.09 3.16
143 144 4.274950 GCTTGTTTACCTCAGCAAGTACAA 59.725 41.667 0.00 0.00 40.09 2.41
144 145 3.813166 GCTTGTTTACCTCAGCAAGTACA 59.187 43.478 0.00 0.00 40.09 2.90
145 146 3.120649 CGCTTGTTTACCTCAGCAAGTAC 60.121 47.826 0.00 0.00 40.09 2.73
146 147 3.064207 CGCTTGTTTACCTCAGCAAGTA 58.936 45.455 0.00 0.00 40.09 2.24
147 148 1.873591 CGCTTGTTTACCTCAGCAAGT 59.126 47.619 0.00 0.00 40.09 3.16
148 149 2.143122 TCGCTTGTTTACCTCAGCAAG 58.857 47.619 0.00 0.00 40.68 4.01
149 150 2.143122 CTCGCTTGTTTACCTCAGCAA 58.857 47.619 0.00 0.00 0.00 3.91
150 151 1.795768 CTCGCTTGTTTACCTCAGCA 58.204 50.000 0.00 0.00 0.00 4.41
151 152 0.444260 GCTCGCTTGTTTACCTCAGC 59.556 55.000 0.00 0.00 0.00 4.26
152 153 1.795768 TGCTCGCTTGTTTACCTCAG 58.204 50.000 0.00 0.00 0.00 3.35
153 154 2.472695 ATGCTCGCTTGTTTACCTCA 57.527 45.000 0.00 0.00 0.00 3.86
154 155 3.188460 TCAAATGCTCGCTTGTTTACCTC 59.812 43.478 0.00 0.00 0.00 3.85
155 156 3.146066 TCAAATGCTCGCTTGTTTACCT 58.854 40.909 0.00 0.00 0.00 3.08
156 157 3.552604 TCAAATGCTCGCTTGTTTACC 57.447 42.857 0.00 0.00 0.00 2.85
157 158 6.452244 AATTTCAAATGCTCGCTTGTTTAC 57.548 33.333 0.00 0.00 0.00 2.01
158 159 5.341993 CGAATTTCAAATGCTCGCTTGTTTA 59.658 36.000 0.00 0.00 0.00 2.01
159 160 4.148696 CGAATTTCAAATGCTCGCTTGTTT 59.851 37.500 0.00 0.00 0.00 2.83
160 161 3.670055 CGAATTTCAAATGCTCGCTTGTT 59.330 39.130 0.00 0.00 0.00 2.83
161 162 3.058293 TCGAATTTCAAATGCTCGCTTGT 60.058 39.130 0.11 0.00 0.00 3.16
162 163 3.491356 TCGAATTTCAAATGCTCGCTTG 58.509 40.909 0.11 0.00 0.00 4.01
163 164 3.751621 CTCGAATTTCAAATGCTCGCTT 58.248 40.909 0.11 0.00 0.00 4.68
164 165 2.476854 GCTCGAATTTCAAATGCTCGCT 60.477 45.455 0.11 0.00 0.00 4.93
165 166 1.842546 GCTCGAATTTCAAATGCTCGC 59.157 47.619 0.11 0.00 0.00 5.03
166 167 2.444351 GGCTCGAATTTCAAATGCTCG 58.556 47.619 0.00 0.00 0.00 5.03
167 168 2.444351 CGGCTCGAATTTCAAATGCTC 58.556 47.619 0.00 0.00 0.00 4.26
168 169 1.133025 CCGGCTCGAATTTCAAATGCT 59.867 47.619 0.00 0.00 0.00 3.79
193 194 1.406069 GGCCAGGTCACACATCTGTAG 60.406 57.143 0.00 0.00 0.00 2.74
233 234 5.001232 CCTTAAAACTGAACCTCATTCCGA 58.999 41.667 0.00 0.00 36.36 4.55
247 248 3.465871 TGGCGACGTTTACCTTAAAACT 58.534 40.909 0.00 0.00 37.24 2.66
249 250 4.317488 AGATGGCGACGTTTACCTTAAAA 58.683 39.130 0.00 0.00 0.00 1.52
274 276 5.105310 AGGAGAAAGCGAATGAAAGCTAGTA 60.105 40.000 0.00 0.00 43.78 1.82
275 277 3.935828 GGAGAAAGCGAATGAAAGCTAGT 59.064 43.478 0.00 0.00 43.78 2.57
276 278 4.187694 AGGAGAAAGCGAATGAAAGCTAG 58.812 43.478 0.00 0.00 43.78 3.42
277 279 4.207891 AGGAGAAAGCGAATGAAAGCTA 57.792 40.909 0.00 0.00 43.78 3.32
297 299 2.205342 TGTGATTAGGGGAGGGGAAAG 58.795 52.381 0.00 0.00 0.00 2.62
417 428 3.559655 TCGCTTGCGCATGTATTAATTCT 59.440 39.130 22.50 0.00 35.30 2.40
422 433 1.003972 GCTTCGCTTGCGCATGTATTA 60.004 47.619 22.50 0.83 35.30 0.98
423 434 0.248215 GCTTCGCTTGCGCATGTATT 60.248 50.000 22.50 0.00 35.30 1.89
425 436 1.368345 ATGCTTCGCTTGCGCATGTA 61.368 50.000 22.50 10.17 42.30 2.29
426 437 2.588146 GATGCTTCGCTTGCGCATGT 62.588 55.000 22.50 2.79 43.77 3.21
427 438 1.937846 GATGCTTCGCTTGCGCATG 60.938 57.895 12.75 16.07 43.77 4.06
478 499 1.148157 GGTCACCGACTCATGCATCG 61.148 60.000 0.00 10.48 38.08 3.84
479 500 2.682893 GGTCACCGACTCATGCATC 58.317 57.895 0.00 0.00 32.47 3.91
480 501 4.941609 GGTCACCGACTCATGCAT 57.058 55.556 0.00 0.00 32.47 3.96
516 2424 5.125578 ACCGGCTGGATATCTTTTTCTTTTC 59.874 40.000 21.41 0.00 39.21 2.29
520 2428 3.545703 CACCGGCTGGATATCTTTTTCT 58.454 45.455 21.41 0.00 39.21 2.52
521 2429 2.033424 GCACCGGCTGGATATCTTTTTC 59.967 50.000 21.41 0.00 39.21 2.29
523 2431 1.680338 GCACCGGCTGGATATCTTTT 58.320 50.000 21.41 0.00 39.21 2.27
524 2432 0.179018 GGCACCGGCTGGATATCTTT 60.179 55.000 21.41 0.00 40.87 2.52
526 2434 2.872388 CGGCACCGGCTGGATATCT 61.872 63.158 21.41 0.00 42.93 1.98
527 2435 2.357517 CGGCACCGGCTGGATATC 60.358 66.667 21.41 3.54 42.93 1.63
558 2466 1.420641 TTTCATCGATCAGCACGCGG 61.421 55.000 12.47 0.00 0.00 6.46
561 2469 0.302890 GCCTTTCATCGATCAGCACG 59.697 55.000 0.00 0.00 0.00 5.34
562 2470 1.329906 CAGCCTTTCATCGATCAGCAC 59.670 52.381 0.00 0.00 0.00 4.40
563 2471 1.660167 CAGCCTTTCATCGATCAGCA 58.340 50.000 0.00 0.00 0.00 4.41
564 2472 0.942962 CCAGCCTTTCATCGATCAGC 59.057 55.000 0.00 0.00 0.00 4.26
565 2473 0.942962 GCCAGCCTTTCATCGATCAG 59.057 55.000 0.00 0.00 0.00 2.90
566 2474 0.464373 GGCCAGCCTTTCATCGATCA 60.464 55.000 0.00 0.00 0.00 2.92
570 2478 2.436646 ACGGCCAGCCTTTCATCG 60.437 61.111 2.24 0.00 0.00 3.84
589 2497 2.118951 ATGGCCTGTTGCTGGCTT 59.881 55.556 3.32 3.07 45.73 4.35
750 2685 1.235724 CCGTTCCGCCTTTTCTTCTT 58.764 50.000 0.00 0.00 0.00 2.52
752 2687 1.209383 GCCGTTCCGCCTTTTCTTC 59.791 57.895 0.00 0.00 0.00 2.87
791 2737 2.873472 GTCTCGGCGATCTCTCTAGAAA 59.127 50.000 11.27 0.00 34.73 2.52
873 2825 0.104090 AAAGGTGTAGGGGTGGAGGT 60.104 55.000 0.00 0.00 0.00 3.85
885 2837 2.009882 TGGTGGTGGGGAAAGGTGT 61.010 57.895 0.00 0.00 0.00 4.16
910 2862 3.594134 GAGAAGATCTCTGTTGTGGTGG 58.406 50.000 0.00 0.00 40.30 4.61
914 2866 4.493547 GAGTGGAGAAGATCTCTGTTGTG 58.506 47.826 0.00 0.00 42.95 3.33
1231 3186 0.187117 AGAGGAGGAGCCATCGATGA 59.813 55.000 26.86 0.00 40.02 2.92
1366 3330 9.143631 TGTAATAATCATCATCATCATCGTCAC 57.856 33.333 0.00 0.00 0.00 3.67
1389 3363 5.601313 GGGTACAATCTCTACCAAGGATGTA 59.399 44.000 0.00 0.00 36.14 2.29
1390 3364 4.409247 GGGTACAATCTCTACCAAGGATGT 59.591 45.833 0.00 0.00 36.14 3.06
1391 3365 4.501571 CGGGTACAATCTCTACCAAGGATG 60.502 50.000 0.00 0.00 36.14 3.51
1430 3404 6.702282 GGATAAATAGCAGTGGTGAGAAGTAC 59.298 42.308 4.76 0.00 0.00 2.73
1431 3405 6.461092 CGGATAAATAGCAGTGGTGAGAAGTA 60.461 42.308 4.76 0.00 0.00 2.24
1432 3406 5.675538 GGATAAATAGCAGTGGTGAGAAGT 58.324 41.667 4.76 0.00 0.00 3.01
1433 3407 4.747108 CGGATAAATAGCAGTGGTGAGAAG 59.253 45.833 4.76 0.00 0.00 2.85
1481 3462 8.445493 CAGAAAAGCATCATCAAAATTAAACCC 58.555 33.333 0.00 0.00 0.00 4.11
1482 3463 8.992073 ACAGAAAAGCATCATCAAAATTAAACC 58.008 29.630 0.00 0.00 0.00 3.27
1520 3509 1.135717 CACGCGCATCAAAATTCAGGA 60.136 47.619 5.73 0.00 0.00 3.86
1536 3525 1.132640 GAATTCACCACGCTCACGC 59.867 57.895 0.00 0.00 45.53 5.34
1542 3531 1.464997 GAGGAACAGAATTCACCACGC 59.535 52.381 8.44 0.00 0.00 5.34
1553 3542 4.373116 GCGGTGGCGAGGAACAGA 62.373 66.667 0.00 0.00 0.00 3.41
1568 3557 4.059459 GGTTCGTGCACTGTCGCG 62.059 66.667 16.19 0.00 40.91 5.87
1571 3560 4.213482 AGAAAAATAGGTTCGTGCACTGTC 59.787 41.667 16.19 4.45 0.00 3.51
1581 3570 7.975750 ACGATTCTGCTAAGAAAAATAGGTTC 58.024 34.615 0.00 0.00 45.44 3.62
1583 3572 7.923414 AACGATTCTGCTAAGAAAAATAGGT 57.077 32.000 0.00 0.00 45.44 3.08
1589 3578 8.911662 GCAAAAATAACGATTCTGCTAAGAAAA 58.088 29.630 0.00 0.00 45.44 2.29
1592 3581 7.377766 AGCAAAAATAACGATTCTGCTAAGA 57.622 32.000 0.00 0.00 40.09 2.10
1593 3582 7.461938 GCAAGCAAAAATAACGATTCTGCTAAG 60.462 37.037 0.00 0.00 40.59 2.18
1594 3583 6.307800 GCAAGCAAAAATAACGATTCTGCTAA 59.692 34.615 0.00 0.00 40.59 3.09
1597 3586 4.622740 AGCAAGCAAAAATAACGATTCTGC 59.377 37.500 0.00 0.00 35.48 4.26
1598 3587 6.033196 CAGAGCAAGCAAAAATAACGATTCTG 59.967 38.462 0.00 0.00 0.00 3.02
1599 3588 6.088824 CAGAGCAAGCAAAAATAACGATTCT 58.911 36.000 0.00 0.00 0.00 2.40
1600 3589 5.220098 GCAGAGCAAGCAAAAATAACGATTC 60.220 40.000 0.00 0.00 0.00 2.52
1601 3590 4.622740 GCAGAGCAAGCAAAAATAACGATT 59.377 37.500 0.00 0.00 0.00 3.34
1603 3592 3.253188 AGCAGAGCAAGCAAAAATAACGA 59.747 39.130 0.00 0.00 0.00 3.85
1604 3593 3.568538 AGCAGAGCAAGCAAAAATAACG 58.431 40.909 0.00 0.00 0.00 3.18
1605 3594 4.802999 AGAGCAGAGCAAGCAAAAATAAC 58.197 39.130 0.00 0.00 0.00 1.89
1606 3595 4.763793 AGAGAGCAGAGCAAGCAAAAATAA 59.236 37.500 0.00 0.00 0.00 1.40
1607 3596 4.330250 AGAGAGCAGAGCAAGCAAAAATA 58.670 39.130 0.00 0.00 0.00 1.40
1608 3597 3.155501 AGAGAGCAGAGCAAGCAAAAAT 58.844 40.909 0.00 0.00 0.00 1.82
1610 3599 2.267174 AGAGAGCAGAGCAAGCAAAA 57.733 45.000 0.00 0.00 0.00 2.44
1611 3600 2.149578 GAAGAGAGCAGAGCAAGCAAA 58.850 47.619 0.00 0.00 0.00 3.68
1613 3602 0.683412 TGAAGAGAGCAGAGCAAGCA 59.317 50.000 0.00 0.00 0.00 3.91
1615 3604 2.609350 GACTGAAGAGAGCAGAGCAAG 58.391 52.381 0.00 0.00 36.86 4.01
1618 3607 0.808125 TCGACTGAAGAGAGCAGAGC 59.192 55.000 0.00 0.00 36.86 4.09
1620 3609 2.080693 GTCTCGACTGAAGAGAGCAGA 58.919 52.381 0.00 0.00 44.41 4.26
1621 3610 1.809547 TGTCTCGACTGAAGAGAGCAG 59.190 52.381 6.99 0.00 44.41 4.24
1622 3611 1.897560 TGTCTCGACTGAAGAGAGCA 58.102 50.000 6.99 6.34 44.41 4.26
1623 3612 2.030717 TGTTGTCTCGACTGAAGAGAGC 60.031 50.000 6.99 4.50 44.41 4.09
1624 3613 3.560503 GTGTTGTCTCGACTGAAGAGAG 58.439 50.000 6.99 2.64 44.41 3.20
1625 3614 2.293677 GGTGTTGTCTCGACTGAAGAGA 59.706 50.000 0.00 3.53 41.91 3.10
1626 3615 2.294791 AGGTGTTGTCTCGACTGAAGAG 59.705 50.000 0.00 0.00 37.09 2.85
1627 3616 2.307768 AGGTGTTGTCTCGACTGAAGA 58.692 47.619 0.00 0.00 0.00 2.87
1629 3618 2.953648 TGTAGGTGTTGTCTCGACTGAA 59.046 45.455 0.00 0.00 0.00 3.02
1630 3619 2.578786 TGTAGGTGTTGTCTCGACTGA 58.421 47.619 0.00 0.00 0.00 3.41
1631 3620 3.245797 CATGTAGGTGTTGTCTCGACTG 58.754 50.000 0.00 0.00 0.00 3.51
1632 3621 2.352814 GCATGTAGGTGTTGTCTCGACT 60.353 50.000 0.00 0.00 0.00 4.18
1633 3622 1.993370 GCATGTAGGTGTTGTCTCGAC 59.007 52.381 0.00 0.00 0.00 4.20
1634 3623 1.402325 CGCATGTAGGTGTTGTCTCGA 60.402 52.381 0.00 0.00 0.00 4.04
1635 3624 0.992072 CGCATGTAGGTGTTGTCTCG 59.008 55.000 0.00 0.00 0.00 4.04
1636 3625 2.094700 TCTCGCATGTAGGTGTTGTCTC 60.095 50.000 0.00 0.00 0.00 3.36
1637 3626 1.893137 TCTCGCATGTAGGTGTTGTCT 59.107 47.619 0.00 0.00 0.00 3.41
1638 3627 2.094700 TCTCTCGCATGTAGGTGTTGTC 60.095 50.000 0.00 0.00 0.00 3.18
1639 3628 1.893137 TCTCTCGCATGTAGGTGTTGT 59.107 47.619 0.00 0.00 0.00 3.32
1640 3629 2.654749 TCTCTCGCATGTAGGTGTTG 57.345 50.000 0.00 0.00 0.00 3.33
1641 3630 2.159043 CCATCTCTCGCATGTAGGTGTT 60.159 50.000 0.00 0.00 0.00 3.32
1642 3631 1.410517 CCATCTCTCGCATGTAGGTGT 59.589 52.381 0.00 0.00 0.00 4.16
1643 3632 1.871408 GCCATCTCTCGCATGTAGGTG 60.871 57.143 0.00 0.00 0.00 4.00
1644 3633 0.390860 GCCATCTCTCGCATGTAGGT 59.609 55.000 0.00 0.00 0.00 3.08
1645 3634 0.678395 AGCCATCTCTCGCATGTAGG 59.322 55.000 0.00 0.00 0.00 3.18
1646 3635 1.339291 TCAGCCATCTCTCGCATGTAG 59.661 52.381 0.00 0.00 0.00 2.74
1647 3636 1.402787 TCAGCCATCTCTCGCATGTA 58.597 50.000 0.00 0.00 0.00 2.29
1648 3637 0.757512 ATCAGCCATCTCTCGCATGT 59.242 50.000 0.00 0.00 0.00 3.21
1649 3638 1.430479 GATCAGCCATCTCTCGCATG 58.570 55.000 0.00 0.00 0.00 4.06
1650 3639 0.038435 CGATCAGCCATCTCTCGCAT 60.038 55.000 0.00 0.00 0.00 4.73
1651 3640 1.361632 CGATCAGCCATCTCTCGCA 59.638 57.895 0.00 0.00 0.00 5.10
1652 3641 2.021039 GCGATCAGCCATCTCTCGC 61.021 63.158 0.00 0.00 40.77 5.03
1653 3642 1.728778 CGCGATCAGCCATCTCTCG 60.729 63.158 0.00 0.00 44.76 4.04
1654 3643 2.021039 GCGCGATCAGCCATCTCTC 61.021 63.158 12.10 0.00 44.76 3.20
1655 3644 2.028778 GCGCGATCAGCCATCTCT 59.971 61.111 12.10 0.00 44.76 3.10
1656 3645 1.884464 TTGCGCGATCAGCCATCTC 60.884 57.895 12.10 0.00 44.76 2.75
1657 3646 2.176273 GTTGCGCGATCAGCCATCT 61.176 57.895 12.10 0.00 44.76 2.90
1658 3647 2.325857 GTTGCGCGATCAGCCATC 59.674 61.111 12.10 0.00 44.76 3.51
1659 3648 2.436469 TGTTGCGCGATCAGCCAT 60.436 55.556 12.10 0.00 44.76 4.40
1660 3649 2.857575 ATCTGTTGCGCGATCAGCCA 62.858 55.000 12.10 0.00 44.76 4.75
1661 3650 2.176273 ATCTGTTGCGCGATCAGCC 61.176 57.895 12.10 0.00 44.76 4.85
1662 3651 1.011463 CATCTGTTGCGCGATCAGC 60.011 57.895 12.10 1.12 43.95 4.26
1663 3652 1.001624 TTCATCTGTTGCGCGATCAG 58.998 50.000 12.10 14.54 0.00 2.90
1664 3653 1.437625 TTTCATCTGTTGCGCGATCA 58.562 45.000 12.10 4.00 0.00 2.92
1665 3654 2.169179 GTTTTCATCTGTTGCGCGATC 58.831 47.619 12.10 0.00 0.00 3.69
1666 3655 1.135689 GGTTTTCATCTGTTGCGCGAT 60.136 47.619 12.10 0.00 0.00 4.58
1667 3656 0.237235 GGTTTTCATCTGTTGCGCGA 59.763 50.000 12.10 0.00 0.00 5.87
1668 3657 0.238289 AGGTTTTCATCTGTTGCGCG 59.762 50.000 0.00 0.00 0.00 6.86
1669 3658 2.742053 TCTAGGTTTTCATCTGTTGCGC 59.258 45.455 0.00 0.00 0.00 6.09
1670 3659 5.551760 AATCTAGGTTTTCATCTGTTGCG 57.448 39.130 0.00 0.00 0.00 4.85
1744 3733 3.337619 CAGTCGCTGCTGCTGTTT 58.662 55.556 14.03 0.00 36.97 2.83
1760 3749 0.527113 ATGTTTATTGCGCTGCAGCA 59.473 45.000 36.03 19.38 46.54 4.41
1761 3750 2.223340 ACTATGTTTATTGCGCTGCAGC 60.223 45.455 29.12 29.12 40.61 5.25
1762 3751 3.063861 TCACTATGTTTATTGCGCTGCAG 59.936 43.478 10.11 10.11 40.61 4.41
1763 3752 3.006247 TCACTATGTTTATTGCGCTGCA 58.994 40.909 9.73 0.00 36.47 4.41
1764 3753 3.673746 TCACTATGTTTATTGCGCTGC 57.326 42.857 9.73 0.00 0.00 5.25
1765 3754 4.530388 CCATCACTATGTTTATTGCGCTG 58.470 43.478 9.73 0.00 0.00 5.18
1766 3755 3.565482 CCCATCACTATGTTTATTGCGCT 59.435 43.478 9.73 0.00 0.00 5.92
1767 3756 3.853307 GCCCATCACTATGTTTATTGCGC 60.853 47.826 0.00 0.00 0.00 6.09
1768 3757 3.565482 AGCCCATCACTATGTTTATTGCG 59.435 43.478 0.00 0.00 0.00 4.85
1769 3758 4.580167 TCAGCCCATCACTATGTTTATTGC 59.420 41.667 0.00 0.00 0.00 3.56
1770 3759 5.240183 CCTCAGCCCATCACTATGTTTATTG 59.760 44.000 0.00 0.00 0.00 1.90
1771 3760 5.380043 CCTCAGCCCATCACTATGTTTATT 58.620 41.667 0.00 0.00 0.00 1.40
1772 3761 4.747931 GCCTCAGCCCATCACTATGTTTAT 60.748 45.833 0.00 0.00 0.00 1.40
1773 3762 3.433598 GCCTCAGCCCATCACTATGTTTA 60.434 47.826 0.00 0.00 0.00 2.01
1774 3763 2.684927 GCCTCAGCCCATCACTATGTTT 60.685 50.000 0.00 0.00 0.00 2.83
1775 3764 1.133976 GCCTCAGCCCATCACTATGTT 60.134 52.381 0.00 0.00 0.00 2.71
1776 3765 0.471617 GCCTCAGCCCATCACTATGT 59.528 55.000 0.00 0.00 0.00 2.29
1777 3766 0.471191 TGCCTCAGCCCATCACTATG 59.529 55.000 0.00 0.00 38.69 2.23
1778 3767 0.763652 CTGCCTCAGCCCATCACTAT 59.236 55.000 0.00 0.00 38.69 2.12
1779 3768 1.340399 CCTGCCTCAGCCCATCACTA 61.340 60.000 0.00 0.00 38.69 2.74
1780 3769 2.677289 CCTGCCTCAGCCCATCACT 61.677 63.158 0.00 0.00 38.69 3.41
1781 3770 2.124403 CCTGCCTCAGCCCATCAC 60.124 66.667 0.00 0.00 38.69 3.06
1801 3790 1.290955 CAGCACAAGCAACCCATGG 59.709 57.895 4.14 4.14 45.49 3.66
1809 3798 1.356270 CAAACGAGCAGCACAAGCA 59.644 52.632 0.00 0.00 45.49 3.91
1812 3801 0.463654 AGTCCAAACGAGCAGCACAA 60.464 50.000 0.00 0.00 0.00 3.33
1850 3839 2.582052 TCGCAACAAGAAAATGACCCT 58.418 42.857 0.00 0.00 0.00 4.34
1897 3887 1.398390 CACTTGTTTCATAGAGCGGGC 59.602 52.381 0.00 0.00 0.00 6.13
1928 3918 1.340991 TGGAAAGCTGGGTAGAATGGC 60.341 52.381 0.00 0.00 0.00 4.40
1945 3935 0.397564 TTGTGCTGACTGCTGATGGA 59.602 50.000 5.87 0.00 43.37 3.41
1946 3936 0.803117 CTTGTGCTGACTGCTGATGG 59.197 55.000 5.87 0.00 43.37 3.51
1952 3942 1.024271 TGTTTCCTTGTGCTGACTGC 58.976 50.000 0.00 0.00 43.25 4.40
1959 3949 5.708948 TGCTGTTATATTGTTTCCTTGTGC 58.291 37.500 0.00 0.00 0.00 4.57
1972 3962 8.938801 TGGAATGGATTGTTATGCTGTTATAT 57.061 30.769 0.00 0.00 0.00 0.86
1973 3963 8.938801 ATGGAATGGATTGTTATGCTGTTATA 57.061 30.769 0.00 0.00 0.00 0.98
1983 3973 9.387397 TGGTATACTCTATGGAATGGATTGTTA 57.613 33.333 2.25 0.00 31.62 2.41
1988 3978 7.617723 GTCTCTGGTATACTCTATGGAATGGAT 59.382 40.741 2.25 0.00 31.62 3.41
2002 3992 5.497474 ACATTTGTTGGGTCTCTGGTATAC 58.503 41.667 0.00 0.00 0.00 1.47
2003 3993 5.772393 ACATTTGTTGGGTCTCTGGTATA 57.228 39.130 0.00 0.00 0.00 1.47
2004 3994 4.657814 ACATTTGTTGGGTCTCTGGTAT 57.342 40.909 0.00 0.00 0.00 2.73
2005 3995 5.570205 TTACATTTGTTGGGTCTCTGGTA 57.430 39.130 0.00 0.00 0.00 3.25
2006 3996 4.447138 TTACATTTGTTGGGTCTCTGGT 57.553 40.909 0.00 0.00 0.00 4.00
2007 3997 5.476599 TGATTTACATTTGTTGGGTCTCTGG 59.523 40.000 0.00 0.00 0.00 3.86
2008 3998 6.207417 ACTGATTTACATTTGTTGGGTCTCTG 59.793 38.462 0.00 0.00 0.00 3.35
2009 3999 6.306987 ACTGATTTACATTTGTTGGGTCTCT 58.693 36.000 0.00 0.00 0.00 3.10
2010 4000 6.431234 AGACTGATTTACATTTGTTGGGTCTC 59.569 38.462 0.00 0.00 0.00 3.36
2011 4001 6.306987 AGACTGATTTACATTTGTTGGGTCT 58.693 36.000 0.00 0.00 0.00 3.85
2012 4002 6.431234 AGAGACTGATTTACATTTGTTGGGTC 59.569 38.462 0.00 0.00 0.00 4.46
2013 4003 6.306987 AGAGACTGATTTACATTTGTTGGGT 58.693 36.000 0.00 0.00 0.00 4.51
2014 4004 6.824305 AGAGACTGATTTACATTTGTTGGG 57.176 37.500 0.00 0.00 0.00 4.12
2015 4005 7.809806 GGAAAGAGACTGATTTACATTTGTTGG 59.190 37.037 0.00 0.00 0.00 3.77
2016 4006 8.571336 AGGAAAGAGACTGATTTACATTTGTTG 58.429 33.333 0.00 0.00 0.00 3.33
2017 4007 8.697507 AGGAAAGAGACTGATTTACATTTGTT 57.302 30.769 0.00 0.00 0.00 2.83
2018 4008 8.697507 AAGGAAAGAGACTGATTTACATTTGT 57.302 30.769 0.00 0.00 0.00 2.83
2019 4009 7.959651 CGAAGGAAAGAGACTGATTTACATTTG 59.040 37.037 0.00 0.00 0.00 2.32
2020 4010 7.661847 ACGAAGGAAAGAGACTGATTTACATTT 59.338 33.333 0.00 0.00 0.00 2.32
2021 4011 7.118390 CACGAAGGAAAGAGACTGATTTACATT 59.882 37.037 0.00 0.00 0.00 2.71
2022 4012 6.591834 CACGAAGGAAAGAGACTGATTTACAT 59.408 38.462 0.00 0.00 0.00 2.29
2023 4013 5.926542 CACGAAGGAAAGAGACTGATTTACA 59.073 40.000 0.00 0.00 0.00 2.41
2024 4014 6.157211 TCACGAAGGAAAGAGACTGATTTAC 58.843 40.000 0.00 0.00 0.00 2.01
2025 4015 6.340962 TCACGAAGGAAAGAGACTGATTTA 57.659 37.500 0.00 0.00 0.00 1.40
2026 4016 5.215252 TCACGAAGGAAAGAGACTGATTT 57.785 39.130 0.00 0.00 0.00 2.17
2027 4017 4.815269 CTCACGAAGGAAAGAGACTGATT 58.185 43.478 0.00 0.00 0.00 2.57
2028 4018 3.367910 GCTCACGAAGGAAAGAGACTGAT 60.368 47.826 0.00 0.00 0.00 2.90
2029 4019 2.029828 GCTCACGAAGGAAAGAGACTGA 60.030 50.000 0.00 0.00 0.00 3.41
2030 4020 2.288457 TGCTCACGAAGGAAAGAGACTG 60.288 50.000 0.00 0.00 0.00 3.51
2031 4021 1.964223 TGCTCACGAAGGAAAGAGACT 59.036 47.619 0.00 0.00 0.00 3.24
2032 4022 2.062519 GTGCTCACGAAGGAAAGAGAC 58.937 52.381 0.00 0.00 0.00 3.36
2033 4023 1.000955 GGTGCTCACGAAGGAAAGAGA 59.999 52.381 0.00 0.00 0.00 3.10
2034 4024 1.433534 GGTGCTCACGAAGGAAAGAG 58.566 55.000 0.00 0.00 0.00 2.85
2035 4025 0.319555 CGGTGCTCACGAAGGAAAGA 60.320 55.000 0.00 0.00 0.00 2.52
2036 4026 1.291877 CCGGTGCTCACGAAGGAAAG 61.292 60.000 0.00 0.00 0.00 2.62
2037 4027 1.301401 CCGGTGCTCACGAAGGAAA 60.301 57.895 0.00 0.00 0.00 3.13
2038 4028 2.342279 CCGGTGCTCACGAAGGAA 59.658 61.111 0.00 0.00 0.00 3.36
2039 4029 4.373116 GCCGGTGCTCACGAAGGA 62.373 66.667 1.90 0.00 33.53 3.36
2040 4030 4.680237 TGCCGGTGCTCACGAAGG 62.680 66.667 1.90 0.00 38.71 3.46
2041 4031 3.114616 CTGCCGGTGCTCACGAAG 61.115 66.667 1.90 0.00 38.71 3.79
2042 4032 4.680237 CCTGCCGGTGCTCACGAA 62.680 66.667 1.90 0.00 38.71 3.85
2044 4034 4.988598 AACCTGCCGGTGCTCACG 62.989 66.667 1.90 0.00 44.73 4.35
2045 4035 1.298859 CTAAACCTGCCGGTGCTCAC 61.299 60.000 1.90 0.00 44.73 3.51
2046 4036 1.003839 CTAAACCTGCCGGTGCTCA 60.004 57.895 1.90 0.00 44.73 4.26
2047 4037 1.745489 CCTAAACCTGCCGGTGCTC 60.745 63.158 1.90 0.00 44.73 4.26
2048 4038 2.064242 AACCTAAACCTGCCGGTGCT 62.064 55.000 1.90 0.00 44.73 4.40
2049 4039 0.321830 TAACCTAAACCTGCCGGTGC 60.322 55.000 1.90 0.00 44.73 5.01
2050 4040 1.002773 ACTAACCTAAACCTGCCGGTG 59.997 52.381 1.90 0.00 44.73 4.94
2052 4042 2.081462 CAACTAACCTAAACCTGCCGG 58.919 52.381 0.00 0.00 0.00 6.13
2053 4043 3.048337 TCAACTAACCTAAACCTGCCG 57.952 47.619 0.00 0.00 0.00 5.69
2054 4044 6.412214 TCTTATCAACTAACCTAAACCTGCC 58.588 40.000 0.00 0.00 0.00 4.85
2055 4045 7.769044 TGATCTTATCAACTAACCTAAACCTGC 59.231 37.037 0.00 0.00 36.11 4.85
2056 4046 9.838339 ATGATCTTATCAACTAACCTAAACCTG 57.162 33.333 0.00 0.00 43.50 4.00
2061 4051 9.120538 GGCAAATGATCTTATCAACTAACCTAA 57.879 33.333 0.00 0.00 43.50 2.69
2062 4052 8.271458 TGGCAAATGATCTTATCAACTAACCTA 58.729 33.333 0.00 0.00 43.50 3.08
2063 4053 7.118723 TGGCAAATGATCTTATCAACTAACCT 58.881 34.615 0.00 0.00 43.50 3.50
2064 4054 7.333528 TGGCAAATGATCTTATCAACTAACC 57.666 36.000 0.00 0.00 43.50 2.85
2065 4055 9.807649 AAATGGCAAATGATCTTATCAACTAAC 57.192 29.630 0.00 0.00 43.50 2.34
2066 4056 9.806203 CAAATGGCAAATGATCTTATCAACTAA 57.194 29.630 0.00 0.00 43.50 2.24
2067 4057 8.415553 CCAAATGGCAAATGATCTTATCAACTA 58.584 33.333 0.00 0.00 43.50 2.24
2068 4058 7.270047 CCAAATGGCAAATGATCTTATCAACT 58.730 34.615 0.00 0.00 43.50 3.16
2069 4059 7.473027 CCAAATGGCAAATGATCTTATCAAC 57.527 36.000 0.00 0.00 43.50 3.18
2086 4076 2.610232 GCTACAACACAAGGCCAAATGG 60.610 50.000 5.01 0.00 38.53 3.16
2087 4077 2.676076 GCTACAACACAAGGCCAAATG 58.324 47.619 5.01 3.18 0.00 2.32
2088 4078 1.269448 CGCTACAACACAAGGCCAAAT 59.731 47.619 5.01 0.00 0.00 2.32
2089 4079 0.665835 CGCTACAACACAAGGCCAAA 59.334 50.000 5.01 0.00 0.00 3.28
2090 4080 0.464735 ACGCTACAACACAAGGCCAA 60.465 50.000 5.01 0.00 0.00 4.52
2091 4081 0.882927 GACGCTACAACACAAGGCCA 60.883 55.000 5.01 0.00 0.00 5.36
2092 4082 0.602905 AGACGCTACAACACAAGGCC 60.603 55.000 0.00 0.00 0.00 5.19
2093 4083 0.790814 GAGACGCTACAACACAAGGC 59.209 55.000 0.00 0.00 0.00 4.35
2094 4084 2.148916 TGAGACGCTACAACACAAGG 57.851 50.000 0.00 0.00 0.00 3.61
2095 4085 3.059884 ACATGAGACGCTACAACACAAG 58.940 45.455 0.00 0.00 0.00 3.16
2096 4086 3.057019 GACATGAGACGCTACAACACAA 58.943 45.455 0.00 0.00 0.00 3.33
2097 4087 2.035321 TGACATGAGACGCTACAACACA 59.965 45.455 0.00 0.00 0.00 3.72
2098 4088 2.408704 GTGACATGAGACGCTACAACAC 59.591 50.000 0.00 0.00 0.00 3.32
2099 4089 2.035321 TGTGACATGAGACGCTACAACA 59.965 45.455 0.00 0.00 0.00 3.33
2100 4090 2.672714 TGTGACATGAGACGCTACAAC 58.327 47.619 0.00 0.00 0.00 3.32
2101 4091 3.592898 ATGTGACATGAGACGCTACAA 57.407 42.857 0.00 0.00 0.00 2.41
2102 4092 4.918810 ATATGTGACATGAGACGCTACA 57.081 40.909 8.61 0.00 0.00 2.74
2103 4093 4.681942 GGAATATGTGACATGAGACGCTAC 59.318 45.833 8.61 0.00 0.00 3.58
2104 4094 4.340950 TGGAATATGTGACATGAGACGCTA 59.659 41.667 8.61 0.00 0.00 4.26
2105 4095 3.132824 TGGAATATGTGACATGAGACGCT 59.867 43.478 8.61 0.00 0.00 5.07
2106 4096 3.457234 TGGAATATGTGACATGAGACGC 58.543 45.455 8.61 0.00 0.00 5.19
2107 4097 4.505556 CACTGGAATATGTGACATGAGACG 59.494 45.833 8.61 0.00 36.38 4.18
2108 4098 5.423015 ACACTGGAATATGTGACATGAGAC 58.577 41.667 8.61 0.00 37.59 3.36
2109 4099 5.682234 ACACTGGAATATGTGACATGAGA 57.318 39.130 8.61 0.00 37.59 3.27
2110 4100 6.748333 AAACACTGGAATATGTGACATGAG 57.252 37.500 8.61 0.00 37.59 2.90
2111 4101 6.489700 ACAAAACACTGGAATATGTGACATGA 59.510 34.615 8.61 0.00 37.59 3.07
2112 4102 6.680810 ACAAAACACTGGAATATGTGACATG 58.319 36.000 8.61 0.00 37.59 3.21
2113 4103 6.899393 ACAAAACACTGGAATATGTGACAT 57.101 33.333 2.65 2.65 37.59 3.06
2114 4104 6.707440 AACAAAACACTGGAATATGTGACA 57.293 33.333 0.00 0.00 37.59 3.58
2115 4105 6.074356 GCAAACAAAACACTGGAATATGTGAC 60.074 38.462 0.00 0.00 37.59 3.67
2116 4106 5.982516 GCAAACAAAACACTGGAATATGTGA 59.017 36.000 0.00 0.00 37.59 3.58
2117 4107 5.107913 CGCAAACAAAACACTGGAATATGTG 60.108 40.000 0.00 0.00 39.80 3.21
2118 4108 4.981674 CGCAAACAAAACACTGGAATATGT 59.018 37.500 0.00 0.00 0.00 2.29
2119 4109 4.981674 ACGCAAACAAAACACTGGAATATG 59.018 37.500 0.00 0.00 0.00 1.78
2120 4110 5.195001 ACGCAAACAAAACACTGGAATAT 57.805 34.783 0.00 0.00 0.00 1.28
2121 4111 4.640789 ACGCAAACAAAACACTGGAATA 57.359 36.364 0.00 0.00 0.00 1.75
2122 4112 3.518634 ACGCAAACAAAACACTGGAAT 57.481 38.095 0.00 0.00 0.00 3.01
2123 4113 2.989840 CAACGCAAACAAAACACTGGAA 59.010 40.909 0.00 0.00 0.00 3.53
2124 4114 2.229062 TCAACGCAAACAAAACACTGGA 59.771 40.909 0.00 0.00 0.00 3.86
2125 4115 2.600731 TCAACGCAAACAAAACACTGG 58.399 42.857 0.00 0.00 0.00 4.00
2126 4116 3.856521 TGATCAACGCAAACAAAACACTG 59.143 39.130 0.00 0.00 0.00 3.66
2127 4117 4.103365 TGATCAACGCAAACAAAACACT 57.897 36.364 0.00 0.00 0.00 3.55
2128 4118 5.189625 CAATGATCAACGCAAACAAAACAC 58.810 37.500 0.00 0.00 0.00 3.32
2129 4119 4.260132 GCAATGATCAACGCAAACAAAACA 60.260 37.500 13.30 0.00 0.00 2.83
2130 4120 4.203077 GCAATGATCAACGCAAACAAAAC 58.797 39.130 13.30 0.00 0.00 2.43
2131 4121 3.247173 GGCAATGATCAACGCAAACAAAA 59.753 39.130 18.28 0.00 0.00 2.44
2132 4122 2.799412 GGCAATGATCAACGCAAACAAA 59.201 40.909 18.28 0.00 0.00 2.83
2133 4123 2.223900 TGGCAATGATCAACGCAAACAA 60.224 40.909 18.28 0.19 0.00 2.83
2134 4124 1.339291 TGGCAATGATCAACGCAAACA 59.661 42.857 18.28 7.32 0.00 2.83
2135 4125 2.063156 TGGCAATGATCAACGCAAAC 57.937 45.000 18.28 5.21 0.00 2.93
2136 4126 2.808523 TTGGCAATGATCAACGCAAA 57.191 40.000 18.28 12.29 0.00 3.68
2137 4127 2.608268 CATTGGCAATGATCAACGCAA 58.392 42.857 31.50 7.27 41.46 4.85
2138 4128 1.736364 GCATTGGCAATGATCAACGCA 60.736 47.619 37.23 0.00 41.46 5.24
2139 4129 0.925466 GCATTGGCAATGATCAACGC 59.075 50.000 37.23 20.01 41.46 4.84
2140 4130 1.193644 CGCATTGGCAATGATCAACG 58.806 50.000 37.23 26.99 41.46 4.10
2141 4131 2.456989 CTCGCATTGGCAATGATCAAC 58.543 47.619 37.23 20.89 41.46 3.18
2142 4132 1.202325 GCTCGCATTGGCAATGATCAA 60.202 47.619 37.23 19.85 41.46 2.57
2143 4133 0.382873 GCTCGCATTGGCAATGATCA 59.617 50.000 37.23 20.93 41.46 2.92
2144 4134 0.318445 GGCTCGCATTGGCAATGATC 60.318 55.000 37.23 22.17 41.46 2.92
2145 4135 0.754217 AGGCTCGCATTGGCAATGAT 60.754 50.000 37.23 15.87 41.46 2.45
2146 4136 1.378911 AGGCTCGCATTGGCAATGA 60.379 52.632 37.23 20.23 41.46 2.57
2147 4137 1.226859 CAGGCTCGCATTGGCAATG 60.227 57.895 30.96 30.96 41.24 2.82
2148 4138 3.072486 GCAGGCTCGCATTGGCAAT 62.072 57.895 6.96 6.96 41.24 3.56
2149 4139 3.751246 GCAGGCTCGCATTGGCAA 61.751 61.111 0.68 0.68 41.24 4.52
2152 4142 3.869272 GACGCAGGCTCGCATTGG 61.869 66.667 9.10 0.00 0.00 3.16
2153 4143 3.869272 GGACGCAGGCTCGCATTG 61.869 66.667 9.10 0.00 0.00 2.82
2166 4156 3.814268 CATTGCCAAGCCCGGACG 61.814 66.667 0.73 0.00 0.00 4.79
2167 4157 3.451894 CCATTGCCAAGCCCGGAC 61.452 66.667 0.73 0.00 0.00 4.79
2171 4161 3.149648 ATCGCCATTGCCAAGCCC 61.150 61.111 0.00 0.00 0.00 5.19
2172 4162 2.105528 CATCGCCATTGCCAAGCC 59.894 61.111 0.00 0.00 0.00 4.35
2173 4163 2.584143 GCATCGCCATTGCCAAGC 60.584 61.111 0.00 0.00 33.95 4.01
2174 4164 1.226859 CTGCATCGCCATTGCCAAG 60.227 57.895 0.00 0.00 39.39 3.61
2175 4165 1.534336 AACTGCATCGCCATTGCCAA 61.534 50.000 0.00 0.00 39.39 4.52
2176 4166 1.978080 AACTGCATCGCCATTGCCA 60.978 52.632 0.00 0.00 39.39 4.92
2177 4167 2.887360 AACTGCATCGCCATTGCC 59.113 55.556 0.00 0.00 39.39 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.