Multiple sequence alignment - TraesCS3D01G474200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G474200 chr3D 100.000 3787 0 0 1 3787 575535046 575538832 0.000000e+00 6994.0
1 TraesCS3D01G474200 chr3D 78.601 1215 233 22 1432 2634 575546651 575547850 0.000000e+00 778.0
2 TraesCS3D01G474200 chr3D 78.583 607 122 5 321 920 575545399 575546004 9.860000e-106 394.0
3 TraesCS3D01G474200 chr3D 75.630 833 171 18 321 1124 574771242 574770413 5.930000e-103 385.0
4 TraesCS3D01G474200 chr3D 75.630 833 171 18 321 1124 575486935 575487764 5.930000e-103 385.0
5 TraesCS3D01G474200 chr3D 77.997 609 124 6 320 920 575525956 575526562 1.280000e-99 374.0
6 TraesCS3D01G474200 chr3D 74.079 760 165 18 321 1054 612881043 612880290 2.230000e-72 283.0
7 TraesCS3D01G474200 chr3B 95.422 1114 51 0 2318 3431 40283152 40284265 0.000000e+00 1775.0
8 TraesCS3D01G474200 chr3B 86.877 1044 87 17 2739 3753 765909601 765910623 0.000000e+00 1123.0
9 TraesCS3D01G474200 chr3B 79.004 1205 240 11 1432 2634 765658383 765659576 0.000000e+00 811.0
10 TraesCS3D01G474200 chr3B 78.482 1199 243 12 1432 2627 765623634 765624820 0.000000e+00 771.0
11 TraesCS3D01G474200 chr3B 77.458 834 151 22 321 1124 765840753 765841579 7.410000e-127 464.0
12 TraesCS3D01G474200 chr3B 89.057 265 22 1 3177 3441 765906901 765907158 4.720000e-84 322.0
13 TraesCS3D01G474200 chr3B 74.303 825 173 19 320 1114 826100960 826101775 2.840000e-81 313.0
14 TraesCS3D01G474200 chr3B 83.073 384 24 12 3417 3763 40284420 40284799 1.020000e-80 311.0
15 TraesCS3D01G474200 chr3B 96.552 58 2 0 3696 3753 765919916 765919973 3.110000e-16 97.1
16 TraesCS3D01G474200 chr3A 78.732 1199 243 8 1432 2627 711057992 711059181 0.000000e+00 791.0
17 TraesCS3D01G474200 chr3A 86.331 556 44 6 3089 3639 711052963 711053491 9.120000e-161 577.0
18 TraesCS3D01G474200 chr3A 92.021 376 21 4 2676 3049 711052245 711052613 1.560000e-143 520.0
19 TraesCS3D01G474200 chr3A 76.923 832 162 15 321 1124 711056719 711057548 2.680000e-121 446.0
20 TraesCS3D01G474200 chr3A 94.574 129 4 3 3660 3787 711053545 711053671 2.980000e-46 196.0
21 TraesCS3D01G474200 chr5B 75.684 658 145 14 1431 2079 44866636 44865985 7.900000e-82 315.0
22 TraesCS3D01G474200 chrUn 74.510 765 174 20 1432 2182 248497236 248496479 2.840000e-81 313.0
23 TraesCS3D01G474200 chr1D 74.026 770 174 22 1431 2181 2718094 2718856 1.330000e-74 291.0
24 TraesCS3D01G474200 chr1D 73.316 787 171 33 1431 2190 2887533 2886759 1.750000e-63 254.0
25 TraesCS3D01G474200 chr7D 75.591 635 122 27 1516 2133 63942456 63941838 2.230000e-72 283.0
26 TraesCS3D01G474200 chr1A 72.903 775 172 28 1431 2180 2440340 2439579 2.270000e-57 233.0
27 TraesCS3D01G474200 chr7B 72.992 722 158 35 1432 2133 5504360 5505064 6.370000e-53 219.0
28 TraesCS3D01G474200 chr1B 76.471 153 36 0 1431 1583 2338809 2338961 2.420000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G474200 chr3D 575535046 575538832 3786 False 6994.0 6994 100.0000 1 3787 1 chr3D.!!$F3 3786
1 TraesCS3D01G474200 chr3D 575545399 575547850 2451 False 586.0 778 78.5920 321 2634 2 chr3D.!!$F4 2313
2 TraesCS3D01G474200 chr3D 574770413 574771242 829 True 385.0 385 75.6300 321 1124 1 chr3D.!!$R1 803
3 TraesCS3D01G474200 chr3D 575486935 575487764 829 False 385.0 385 75.6300 321 1124 1 chr3D.!!$F1 803
4 TraesCS3D01G474200 chr3D 575525956 575526562 606 False 374.0 374 77.9970 320 920 1 chr3D.!!$F2 600
5 TraesCS3D01G474200 chr3D 612880290 612881043 753 True 283.0 283 74.0790 321 1054 1 chr3D.!!$R2 733
6 TraesCS3D01G474200 chr3B 40283152 40284799 1647 False 1043.0 1775 89.2475 2318 3763 2 chr3B.!!$F6 1445
7 TraesCS3D01G474200 chr3B 765658383 765659576 1193 False 811.0 811 79.0040 1432 2634 1 chr3B.!!$F2 1202
8 TraesCS3D01G474200 chr3B 765623634 765624820 1186 False 771.0 771 78.4820 1432 2627 1 chr3B.!!$F1 1195
9 TraesCS3D01G474200 chr3B 765906901 765910623 3722 False 722.5 1123 87.9670 2739 3753 2 chr3B.!!$F7 1014
10 TraesCS3D01G474200 chr3B 765840753 765841579 826 False 464.0 464 77.4580 321 1124 1 chr3B.!!$F3 803
11 TraesCS3D01G474200 chr3B 826100960 826101775 815 False 313.0 313 74.3030 320 1114 1 chr3B.!!$F5 794
12 TraesCS3D01G474200 chr3A 711052245 711059181 6936 False 506.0 791 85.7162 321 3787 5 chr3A.!!$F1 3466
13 TraesCS3D01G474200 chr5B 44865985 44866636 651 True 315.0 315 75.6840 1431 2079 1 chr5B.!!$R1 648
14 TraesCS3D01G474200 chrUn 248496479 248497236 757 True 313.0 313 74.5100 1432 2182 1 chrUn.!!$R1 750
15 TraesCS3D01G474200 chr1D 2718094 2718856 762 False 291.0 291 74.0260 1431 2181 1 chr1D.!!$F1 750
16 TraesCS3D01G474200 chr1D 2886759 2887533 774 True 254.0 254 73.3160 1431 2190 1 chr1D.!!$R1 759
17 TraesCS3D01G474200 chr7D 63941838 63942456 618 True 283.0 283 75.5910 1516 2133 1 chr7D.!!$R1 617
18 TraesCS3D01G474200 chr1A 2439579 2440340 761 True 233.0 233 72.9030 1431 2180 1 chr1A.!!$R1 749
19 TraesCS3D01G474200 chr7B 5504360 5505064 704 False 219.0 219 72.9920 1432 2133 1 chr7B.!!$F1 701

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 0.034896 ACTAGCCGTGTTTGTCCTGG 59.965 55.0 0.0 0.0 0.00 4.45 F
268 269 0.242017 GATTGCACACTGCCAACTCC 59.758 55.0 0.0 0.0 44.23 3.85 F
601 4759 0.247736 GAAGATGACGGTGAGCCTGT 59.752 55.0 0.0 0.0 0.00 4.00 F
2105 6554 0.322546 AAAGGGTAGAAGCTTGCCGG 60.323 55.0 2.1 0.0 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1321 5510 0.250684 TGAGGCGAAAATGCACTGGA 60.251 50.0 0.00 0.0 36.28 3.86 R
1322 5511 0.597568 TTGAGGCGAAAATGCACTGG 59.402 50.0 0.00 0.0 36.28 4.00 R
2486 6938 0.885196 GAGCTCGTCTCAAGTCCAGT 59.115 55.0 0.00 0.0 41.51 4.00 R
3523 8145 0.901114 ATCACATGCAGCCTTGGCAA 60.901 50.0 14.54 0.0 45.60 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.719354 GCGGTGTGTGGTTGGTTC 59.281 61.111 0.00 0.00 0.00 3.62
18 19 3.018973 CGGTGTGTGGTTGGTTCG 58.981 61.111 0.00 0.00 0.00 3.95
19 20 2.719354 GGTGTGTGGTTGGTTCGC 59.281 61.111 0.00 0.00 0.00 4.70
20 21 2.719354 GTGTGTGGTTGGTTCGCC 59.281 61.111 0.00 0.00 37.92 5.54
21 22 2.897846 TGTGTGGTTGGTTCGCCG 60.898 61.111 0.00 0.00 41.18 6.46
22 23 3.656045 GTGTGGTTGGTTCGCCGG 61.656 66.667 0.00 0.00 41.18 6.13
24 25 3.656045 GTGGTTGGTTCGCCGGTG 61.656 66.667 9.28 9.28 41.18 4.94
25 26 4.939368 TGGTTGGTTCGCCGGTGG 62.939 66.667 16.49 1.03 41.18 4.61
26 27 4.941309 GGTTGGTTCGCCGGTGGT 62.941 66.667 16.49 0.00 41.18 4.16
27 28 3.656045 GTTGGTTCGCCGGTGGTG 61.656 66.667 16.49 0.00 41.18 4.17
38 39 2.358247 GGTGGTGCCGACGTTGAT 60.358 61.111 3.74 0.00 0.00 2.57
40 41 1.206578 GTGGTGCCGACGTTGATTG 59.793 57.895 3.74 0.00 0.00 2.67
41 42 1.963855 TGGTGCCGACGTTGATTGG 60.964 57.895 3.74 0.00 0.00 3.16
42 43 1.964373 GGTGCCGACGTTGATTGGT 60.964 57.895 3.74 0.00 0.00 3.67
44 45 1.669760 TGCCGACGTTGATTGGTCC 60.670 57.895 3.74 0.00 0.00 4.46
45 46 1.669760 GCCGACGTTGATTGGTCCA 60.670 57.895 3.74 0.00 0.00 4.02
47 48 1.635663 CCGACGTTGATTGGTCCAGC 61.636 60.000 3.74 0.00 0.00 4.85
48 49 1.635663 CGACGTTGATTGGTCCAGCC 61.636 60.000 0.00 0.00 37.90 4.85
56 57 3.077907 TGGTCCAGCCAACTAGCC 58.922 61.111 0.00 0.00 45.94 3.93
59 60 1.741770 GTCCAGCCAACTAGCCGTG 60.742 63.158 0.00 0.00 0.00 4.94
61 62 1.302511 CCAGCCAACTAGCCGTGTT 60.303 57.895 0.00 0.00 0.00 3.32
62 63 0.889186 CCAGCCAACTAGCCGTGTTT 60.889 55.000 0.00 0.00 0.00 2.83
63 64 0.238289 CAGCCAACTAGCCGTGTTTG 59.762 55.000 0.00 0.00 0.00 2.93
65 66 0.237498 GCCAACTAGCCGTGTTTGTC 59.763 55.000 0.00 0.00 0.00 3.18
66 67 0.872388 CCAACTAGCCGTGTTTGTCC 59.128 55.000 0.00 0.00 0.00 4.02
67 68 1.542547 CCAACTAGCCGTGTTTGTCCT 60.543 52.381 0.00 0.00 0.00 3.85
69 70 0.034896 ACTAGCCGTGTTTGTCCTGG 59.965 55.000 0.00 0.00 0.00 4.45
70 71 0.320374 CTAGCCGTGTTTGTCCTGGA 59.680 55.000 0.00 0.00 0.00 3.86
71 72 0.320374 TAGCCGTGTTTGTCCTGGAG 59.680 55.000 0.00 0.00 0.00 3.86
72 73 1.227853 GCCGTGTTTGTCCTGGAGT 60.228 57.895 0.00 0.00 0.00 3.85
73 74 1.228657 GCCGTGTTTGTCCTGGAGTC 61.229 60.000 0.00 0.00 0.00 3.36
75 76 1.474320 CCGTGTTTGTCCTGGAGTCAA 60.474 52.381 0.00 0.00 0.00 3.18
78 79 2.030805 GTGTTTGTCCTGGAGTCAATGC 60.031 50.000 0.00 0.00 0.00 3.56
80 81 2.821969 GTTTGTCCTGGAGTCAATGCAT 59.178 45.455 0.00 0.00 0.00 3.96
81 82 2.885135 TGTCCTGGAGTCAATGCATT 57.115 45.000 5.99 5.99 0.00 3.56
82 83 2.439409 TGTCCTGGAGTCAATGCATTG 58.561 47.619 29.75 29.75 39.10 2.82
83 84 2.040145 TGTCCTGGAGTCAATGCATTGA 59.960 45.455 33.08 33.08 43.94 2.57
91 92 3.645884 AGTCAATGCATTGAGTTGTTGC 58.354 40.909 36.29 24.03 45.50 4.17
93 94 4.053295 GTCAATGCATTGAGTTGTTGCTT 58.947 39.130 36.29 0.00 46.44 3.91
94 95 5.009911 AGTCAATGCATTGAGTTGTTGCTTA 59.990 36.000 36.29 12.83 45.50 3.09
96 97 6.200665 GTCAATGCATTGAGTTGTTGCTTAAA 59.799 34.615 36.29 12.22 46.44 1.52
97 98 6.200665 TCAATGCATTGAGTTGTTGCTTAAAC 59.799 34.615 33.08 0.00 41.51 2.01
105 106 2.810439 TGTTGCTTAAACATGGCCAC 57.190 45.000 8.16 0.00 43.96 5.01
106 107 2.034878 TGTTGCTTAAACATGGCCACA 58.965 42.857 8.16 0.00 43.96 4.17
108 109 3.070734 TGTTGCTTAAACATGGCCACATT 59.929 39.130 8.16 6.11 43.96 2.71
109 110 3.316071 TGCTTAAACATGGCCACATTG 57.684 42.857 8.16 5.14 34.35 2.82
111 112 3.056678 TGCTTAAACATGGCCACATTGAG 60.057 43.478 8.16 10.85 34.35 3.02
112 113 3.056607 GCTTAAACATGGCCACATTGAGT 60.057 43.478 8.16 0.00 34.35 3.41
113 114 4.561326 GCTTAAACATGGCCACATTGAGTT 60.561 41.667 8.16 5.71 34.35 3.01
114 115 3.389925 AAACATGGCCACATTGAGTTG 57.610 42.857 8.16 1.39 34.35 3.16
115 116 1.999648 ACATGGCCACATTGAGTTGT 58.000 45.000 8.16 2.21 34.35 3.32
116 117 2.318908 ACATGGCCACATTGAGTTGTT 58.681 42.857 8.16 0.00 34.35 2.83
117 118 2.036217 ACATGGCCACATTGAGTTGTTG 59.964 45.455 8.16 0.00 34.35 3.33
118 119 0.388659 TGGCCACATTGAGTTGTTGC 59.611 50.000 0.00 0.00 37.49 4.17
119 120 0.675633 GGCCACATTGAGTTGTTGCT 59.324 50.000 0.00 0.00 38.11 3.91
120 121 1.069049 GGCCACATTGAGTTGTTGCTT 59.931 47.619 0.00 0.00 38.11 3.91
122 123 3.243704 GGCCACATTGAGTTGTTGCTTAA 60.244 43.478 0.00 0.00 38.11 1.85
123 124 4.367450 GCCACATTGAGTTGTTGCTTAAA 58.633 39.130 0.00 0.00 35.86 1.52
124 125 4.209080 GCCACATTGAGTTGTTGCTTAAAC 59.791 41.667 0.00 0.00 35.86 2.01
142 143 3.287867 AACAATGCATACTGAGGAGGG 57.712 47.619 0.00 0.00 0.00 4.30
144 145 1.142465 CAATGCATACTGAGGAGGGCT 59.858 52.381 0.00 0.00 0.00 5.19
145 146 2.369860 CAATGCATACTGAGGAGGGCTA 59.630 50.000 0.00 0.00 0.00 3.93
146 147 2.405618 TGCATACTGAGGAGGGCTAT 57.594 50.000 0.00 0.00 0.00 2.97
147 148 2.251818 TGCATACTGAGGAGGGCTATC 58.748 52.381 0.00 0.00 0.00 2.08
150 151 3.817567 GCATACTGAGGAGGGCTATCTCT 60.818 52.174 0.00 0.00 34.39 3.10
151 152 4.568804 GCATACTGAGGAGGGCTATCTCTA 60.569 50.000 0.00 0.00 34.39 2.43
152 153 5.765510 CATACTGAGGAGGGCTATCTCTAT 58.234 45.833 0.00 0.00 34.39 1.98
154 155 5.086598 ACTGAGGAGGGCTATCTCTATTT 57.913 43.478 0.00 0.00 34.39 1.40
155 156 5.472347 ACTGAGGAGGGCTATCTCTATTTT 58.528 41.667 0.00 0.00 34.39 1.82
156 157 5.908247 ACTGAGGAGGGCTATCTCTATTTTT 59.092 40.000 0.00 0.00 34.39 1.94
181 182 6.645700 TTTTCTTTTGCACAAGACAATGAC 57.354 33.333 14.75 0.00 32.28 3.06
185 186 0.307453 TGCACAAGACAATGACGCAC 59.693 50.000 0.00 0.00 30.99 5.34
186 187 0.307453 GCACAAGACAATGACGCACA 59.693 50.000 0.00 0.00 0.00 4.57
187 188 1.921573 GCACAAGACAATGACGCACAC 60.922 52.381 0.00 0.00 0.00 3.82
188 189 1.330213 CACAAGACAATGACGCACACA 59.670 47.619 0.00 0.00 0.00 3.72
189 190 1.330521 ACAAGACAATGACGCACACAC 59.669 47.619 0.00 0.00 0.00 3.82
190 191 1.599071 CAAGACAATGACGCACACACT 59.401 47.619 0.00 0.00 0.00 3.55
191 192 2.799978 CAAGACAATGACGCACACACTA 59.200 45.455 0.00 0.00 0.00 2.74
192 193 3.106242 AGACAATGACGCACACACTAA 57.894 42.857 0.00 0.00 0.00 2.24
195 196 2.483877 ACAATGACGCACACACTAATGG 59.516 45.455 0.00 0.00 0.00 3.16
199 200 1.459592 GACGCACACACTAATGGTCAC 59.540 52.381 0.00 0.00 0.00 3.67
201 202 1.460743 CGCACACACTAATGGTCACTG 59.539 52.381 0.00 0.00 0.00 3.66
202 203 2.494059 GCACACACTAATGGTCACTGT 58.506 47.619 0.00 0.00 0.00 3.55
203 204 2.878406 GCACACACTAATGGTCACTGTT 59.122 45.455 0.00 0.00 0.00 3.16
204 205 3.303990 GCACACACTAATGGTCACTGTTG 60.304 47.826 0.00 0.00 0.00 3.33
211 212 5.299279 CACTAATGGTCACTGTTGGTTTCTT 59.701 40.000 0.00 0.00 0.00 2.52
212 213 4.918810 AATGGTCACTGTTGGTTTCTTC 57.081 40.909 0.00 0.00 0.00 2.87
214 215 2.241176 TGGTCACTGTTGGTTTCTTCCT 59.759 45.455 0.00 0.00 0.00 3.36
219 220 5.589050 GTCACTGTTGGTTTCTTCCTACTTT 59.411 40.000 0.00 0.00 35.06 2.66
221 222 5.008712 CACTGTTGGTTTCTTCCTACTTTCC 59.991 44.000 0.00 0.00 35.06 3.13
222 223 5.104067 ACTGTTGGTTTCTTCCTACTTTCCT 60.104 40.000 0.00 0.00 35.06 3.36
224 225 6.531021 TGTTGGTTTCTTCCTACTTTCCTAG 58.469 40.000 0.00 0.00 35.06 3.02
226 227 4.844655 TGGTTTCTTCCTACTTTCCTAGCT 59.155 41.667 0.00 0.00 0.00 3.32
227 228 6.021030 TGGTTTCTTCCTACTTTCCTAGCTA 58.979 40.000 0.00 0.00 0.00 3.32
228 229 6.154706 TGGTTTCTTCCTACTTTCCTAGCTAG 59.845 42.308 14.20 14.20 0.00 3.42
230 231 5.132043 TCTTCCTACTTTCCTAGCTAGCT 57.868 43.478 23.12 23.12 0.00 3.32
231 232 5.520751 TCTTCCTACTTTCCTAGCTAGCTT 58.479 41.667 24.88 5.19 0.00 3.74
232 233 6.670617 TCTTCCTACTTTCCTAGCTAGCTTA 58.329 40.000 24.88 6.21 0.00 3.09
236 237 6.717540 TCCTACTTTCCTAGCTAGCTTATCTG 59.282 42.308 24.88 11.57 0.00 2.90
238 239 4.651503 ACTTTCCTAGCTAGCTTATCTGCA 59.348 41.667 24.88 1.10 34.99 4.41
240 241 4.862902 TCCTAGCTAGCTTATCTGCAAG 57.137 45.455 24.88 11.21 34.99 4.01
241 242 3.576118 TCCTAGCTAGCTTATCTGCAAGG 59.424 47.826 24.88 19.95 34.99 3.61
243 244 4.039730 CCTAGCTAGCTTATCTGCAAGGAA 59.960 45.833 24.88 0.00 34.99 3.36
245 246 4.195416 AGCTAGCTTATCTGCAAGGAAAC 58.805 43.478 12.68 0.00 34.99 2.78
247 248 3.439857 AGCTTATCTGCAAGGAAACCA 57.560 42.857 0.00 0.00 34.99 3.67
249 250 3.760684 AGCTTATCTGCAAGGAAACCAAG 59.239 43.478 0.00 0.00 34.99 3.61
250 251 3.758554 GCTTATCTGCAAGGAAACCAAGA 59.241 43.478 0.00 0.00 0.00 3.02
251 252 4.400567 GCTTATCTGCAAGGAAACCAAGAT 59.599 41.667 0.00 0.00 0.00 2.40
252 253 5.105595 GCTTATCTGCAAGGAAACCAAGATT 60.106 40.000 0.00 0.00 0.00 2.40
253 254 4.796038 ATCTGCAAGGAAACCAAGATTG 57.204 40.909 0.00 0.00 0.00 2.67
255 256 2.818130 GCAAGGAAACCAAGATTGCA 57.182 45.000 3.51 0.00 44.32 4.08
256 257 2.407090 GCAAGGAAACCAAGATTGCAC 58.593 47.619 3.51 0.00 44.32 4.57
257 258 2.224018 GCAAGGAAACCAAGATTGCACA 60.224 45.455 3.51 0.00 44.32 4.57
260 261 2.624838 AGGAAACCAAGATTGCACACTG 59.375 45.455 0.00 0.00 0.00 3.66
262 263 0.675633 AACCAAGATTGCACACTGCC 59.324 50.000 0.00 0.00 44.23 4.85
263 264 0.467844 ACCAAGATTGCACACTGCCA 60.468 50.000 0.00 0.00 44.23 4.92
264 265 0.675083 CCAAGATTGCACACTGCCAA 59.325 50.000 0.00 0.00 44.23 4.52
265 266 1.603678 CCAAGATTGCACACTGCCAAC 60.604 52.381 0.00 0.00 44.23 3.77
266 267 1.338973 CAAGATTGCACACTGCCAACT 59.661 47.619 0.00 0.00 44.23 3.16
268 269 0.242017 GATTGCACACTGCCAACTCC 59.758 55.000 0.00 0.00 44.23 3.85
271 272 1.529244 GCACACTGCCAACTCCCTT 60.529 57.895 0.00 0.00 37.42 3.95
272 273 0.250727 GCACACTGCCAACTCCCTTA 60.251 55.000 0.00 0.00 37.42 2.69
274 275 1.136828 ACACTGCCAACTCCCTTACA 58.863 50.000 0.00 0.00 0.00 2.41
278 279 1.063070 TGCCAACTCCCTTACACCCA 61.063 55.000 0.00 0.00 0.00 4.51
280 281 1.479757 GCCAACTCCCTTACACCCAAA 60.480 52.381 0.00 0.00 0.00 3.28
282 283 3.506398 CCAACTCCCTTACACCCAAAAT 58.494 45.455 0.00 0.00 0.00 1.82
284 285 4.461431 CCAACTCCCTTACACCCAAAATAC 59.539 45.833 0.00 0.00 0.00 1.89
285 286 4.311520 ACTCCCTTACACCCAAAATACC 57.688 45.455 0.00 0.00 0.00 2.73
286 287 3.658705 ACTCCCTTACACCCAAAATACCA 59.341 43.478 0.00 0.00 0.00 3.25
288 289 3.093814 CCCTTACACCCAAAATACCACC 58.906 50.000 0.00 0.00 0.00 4.61
290 291 3.508402 CCTTACACCCAAAATACCACCAC 59.492 47.826 0.00 0.00 0.00 4.16
291 292 2.757894 ACACCCAAAATACCACCACA 57.242 45.000 0.00 0.00 0.00 4.17
292 293 3.033659 ACACCCAAAATACCACCACAA 57.966 42.857 0.00 0.00 0.00 3.33
293 294 2.696187 ACACCCAAAATACCACCACAAC 59.304 45.455 0.00 0.00 0.00 3.32
294 295 2.695666 CACCCAAAATACCACCACAACA 59.304 45.455 0.00 0.00 0.00 3.33
296 297 2.962421 CCCAAAATACCACCACAACAGT 59.038 45.455 0.00 0.00 0.00 3.55
297 298 3.243704 CCCAAAATACCACCACAACAGTG 60.244 47.826 0.00 0.00 34.91 3.66
298 299 3.383185 CCAAAATACCACCACAACAGTGT 59.617 43.478 0.00 0.00 39.07 3.55
310 311 3.296854 ACAACAGTGTGTAGAGAGGTCA 58.703 45.455 0.00 0.00 36.31 4.02
312 313 4.202161 ACAACAGTGTGTAGAGAGGTCAAG 60.202 45.833 0.00 0.00 36.31 3.02
315 316 3.759086 CAGTGTGTAGAGAGGTCAAGCTA 59.241 47.826 0.00 0.00 0.00 3.32
317 318 3.090037 TGTGTAGAGAGGTCAAGCTACC 58.910 50.000 0.00 0.00 40.06 3.18
422 4577 0.460284 AGCGCGTGAGGAAAGGTATG 60.460 55.000 8.43 0.00 0.00 2.39
436 4591 5.104735 GGAAAGGTATGGAGTCTCTTGTCAT 60.105 44.000 0.00 0.00 0.00 3.06
443 4598 5.117406 TGGAGTCTCTTGTCATAGAGCTA 57.883 43.478 0.00 0.00 41.18 3.32
446 4601 5.221165 GGAGTCTCTTGTCATAGAGCTAACC 60.221 48.000 0.00 0.00 41.18 2.85
482 4637 4.633980 CGCAAGGTGGCAAAAGTC 57.366 55.556 0.00 0.00 0.00 3.01
487 4642 2.909965 GGTGGCAAAAGTCCCGCA 60.910 61.111 0.00 0.00 33.31 5.69
521 4676 1.068352 AGGGGGTCAAGATATGGGCC 61.068 60.000 0.00 0.00 0.00 5.80
567 4725 0.320374 GGAGGACATCGTTGACACCA 59.680 55.000 0.00 0.00 0.00 4.17
569 4727 2.002586 GAGGACATCGTTGACACCATG 58.997 52.381 0.00 0.00 0.00 3.66
584 4742 1.476477 CCATGATGGTGCATGTGGAA 58.524 50.000 2.54 0.00 43.16 3.53
599 4757 0.904865 TGGAAGATGACGGTGAGCCT 60.905 55.000 0.00 0.00 0.00 4.58
601 4759 0.247736 GAAGATGACGGTGAGCCTGT 59.752 55.000 0.00 0.00 0.00 4.00
626 4787 8.233190 GTCAACCAGAATAGAATCAAGAAGTTG 58.767 37.037 0.00 0.00 34.67 3.16
627 4788 8.156820 TCAACCAGAATAGAATCAAGAAGTTGA 58.843 33.333 0.00 0.00 46.81 3.18
659 4820 8.737168 AGATCATCAAATTATTCAAGAACGGA 57.263 30.769 0.00 0.00 0.00 4.69
661 4822 9.443283 GATCATCAAATTATTCAAGAACGGAAG 57.557 33.333 0.00 0.00 0.00 3.46
668 4829 3.334583 TTCAAGAACGGAAGGGATCTG 57.665 47.619 0.00 0.00 40.53 2.90
683 4844 3.430098 GGGATCTGCATCGGATATCTGAC 60.430 52.174 16.56 5.85 33.47 3.51
684 4845 3.446873 GGATCTGCATCGGATATCTGACT 59.553 47.826 16.56 3.83 33.47 3.41
694 4855 6.428083 TCGGATATCTGACTCTCTAGAAGT 57.572 41.667 10.33 7.13 0.00 3.01
695 4856 6.227522 TCGGATATCTGACTCTCTAGAAGTG 58.772 44.000 10.33 2.32 0.00 3.16
699 4860 4.642466 TCTGACTCTCTAGAAGTGGTGA 57.358 45.455 10.94 5.38 0.00 4.02
701 4862 4.946772 TCTGACTCTCTAGAAGTGGTGATG 59.053 45.833 10.94 0.00 0.00 3.07
737 4898 2.949106 GCTGAGCAGCGCAAAAGA 59.051 55.556 11.47 0.00 45.29 2.52
792 4953 1.302511 GGCATTGACCCTCGTGTGT 60.303 57.895 0.00 0.00 0.00 3.72
827 4988 1.808945 GATGTGACAGAGCTTGTTGGG 59.191 52.381 0.00 0.00 41.05 4.12
830 4991 2.079925 GTGACAGAGCTTGTTGGGATC 58.920 52.381 0.00 0.00 41.05 3.36
834 4995 3.760684 GACAGAGCTTGTTGGGATCAAAT 59.239 43.478 0.00 0.00 41.05 2.32
837 4998 5.416952 ACAGAGCTTGTTGGGATCAAATAAG 59.583 40.000 10.62 10.62 36.31 1.73
841 5002 4.321899 GCTTGTTGGGATCAAATAAGCACA 60.322 41.667 24.41 4.22 45.07 4.57
854 5015 7.715657 TCAAATAAGCACAAGACAAGTTGATT 58.284 30.769 10.54 0.95 0.00 2.57
868 5029 6.738114 ACAAGTTGATTAACATGTTGACTGG 58.262 36.000 21.42 14.80 43.82 4.00
889 5050 3.019564 GGGGTGATGATTGGTTGAAGAG 58.980 50.000 0.00 0.00 0.00 2.85
927 5108 2.807967 TCTGTTGTTGGATTCTCTTGCG 59.192 45.455 0.00 0.00 0.00 4.85
942 5123 3.935203 CTCTTGCGAAAGTGGTGTATGAT 59.065 43.478 2.29 0.00 0.00 2.45
957 5138 9.547753 GTGGTGTATGATAAGATCAAAGTACAT 57.452 33.333 0.00 0.00 43.50 2.29
972 5153 2.831526 AGTACATTTTGATTGTGGGGCC 59.168 45.455 0.00 0.00 0.00 5.80
1033 5214 9.432982 AAGTCTTCAAGGATATTCTCTATGAGT 57.567 33.333 0.00 0.00 0.00 3.41
1086 5268 6.029346 AGTGCAATAAGGGATGAAAAACAG 57.971 37.500 0.00 0.00 0.00 3.16
1089 5271 5.011943 TGCAATAAGGGATGAAAAACAGCTT 59.988 36.000 0.00 0.00 35.04 3.74
1103 5285 6.414408 AAAACAGCTTATCGATGAACTCAG 57.586 37.500 8.54 0.00 32.18 3.35
1116 5298 8.244494 TCGATGAACTCAGTGAATTTCTTAAG 57.756 34.615 12.95 0.00 0.00 1.85
1117 5299 8.088365 TCGATGAACTCAGTGAATTTCTTAAGA 58.912 33.333 0.00 0.00 0.00 2.10
1124 5306 7.172361 ACTCAGTGAATTTCTTAAGAGCAAGAC 59.828 37.037 5.12 2.16 34.31 3.01
1125 5307 6.428159 TCAGTGAATTTCTTAAGAGCAAGACC 59.572 38.462 5.12 0.00 34.31 3.85
1126 5308 6.205464 CAGTGAATTTCTTAAGAGCAAGACCA 59.795 38.462 5.12 0.00 34.31 4.02
1128 5310 7.285401 AGTGAATTTCTTAAGAGCAAGACCAAA 59.715 33.333 5.12 0.00 34.31 3.28
1129 5311 8.084684 GTGAATTTCTTAAGAGCAAGACCAAAT 58.915 33.333 5.12 0.00 34.31 2.32
1131 5313 9.481340 GAATTTCTTAAGAGCAAGACCAAATTT 57.519 29.630 5.12 0.00 34.31 1.82
1140 5322 7.766283 AGAGCAAGACCAAATTTATTAAGAGC 58.234 34.615 0.00 0.00 0.00 4.09
1141 5323 7.394359 AGAGCAAGACCAAATTTATTAAGAGCA 59.606 33.333 0.00 0.00 0.00 4.26
1142 5324 7.895759 AGCAAGACCAAATTTATTAAGAGCAA 58.104 30.769 0.00 0.00 0.00 3.91
1143 5325 8.534496 AGCAAGACCAAATTTATTAAGAGCAAT 58.466 29.630 0.00 0.00 0.00 3.56
1144 5326 9.801873 GCAAGACCAAATTTATTAAGAGCAATA 57.198 29.630 0.00 0.00 0.00 1.90
1158 5340 5.526506 AGAGCAATAATGAATTCCTTGCC 57.473 39.130 19.76 14.43 38.38 4.52
1159 5341 4.957954 AGAGCAATAATGAATTCCTTGCCA 59.042 37.500 19.76 0.00 38.38 4.92
1160 5342 5.422970 AGAGCAATAATGAATTCCTTGCCAA 59.577 36.000 19.76 0.00 38.38 4.52
1161 5343 5.422145 AGCAATAATGAATTCCTTGCCAAC 58.578 37.500 19.76 4.11 38.38 3.77
1162 5344 5.046448 AGCAATAATGAATTCCTTGCCAACA 60.046 36.000 19.76 0.00 38.38 3.33
1163 5345 5.642919 GCAATAATGAATTCCTTGCCAACAA 59.357 36.000 15.63 0.00 34.83 2.83
1173 5355 1.544724 TTGCCAACAAGAGGTATGCC 58.455 50.000 0.00 0.00 0.00 4.40
1174 5356 0.403655 TGCCAACAAGAGGTATGCCA 59.596 50.000 1.54 0.00 37.19 4.92
1175 5357 1.202989 TGCCAACAAGAGGTATGCCAA 60.203 47.619 1.54 0.00 37.19 4.52
1176 5358 1.202348 GCCAACAAGAGGTATGCCAAC 59.798 52.381 1.54 0.00 37.19 3.77
1188 5370 4.344968 AGGTATGCCAACTGCTTTTTCTTT 59.655 37.500 1.54 0.00 42.00 2.52
1189 5371 4.448732 GGTATGCCAACTGCTTTTTCTTTG 59.551 41.667 0.00 0.00 42.00 2.77
1191 5373 3.520569 TGCCAACTGCTTTTTCTTTGTC 58.479 40.909 0.00 0.00 42.00 3.18
1192 5374 3.056250 TGCCAACTGCTTTTTCTTTGTCA 60.056 39.130 0.00 0.00 42.00 3.58
1194 5376 4.571984 GCCAACTGCTTTTTCTTTGTCATT 59.428 37.500 0.00 0.00 36.87 2.57
1195 5377 5.502869 GCCAACTGCTTTTTCTTTGTCATTG 60.503 40.000 0.00 0.00 36.87 2.82
1197 5379 6.480981 CCAACTGCTTTTTCTTTGTCATTGAT 59.519 34.615 0.00 0.00 0.00 2.57
1199 5381 6.808829 ACTGCTTTTTCTTTGTCATTGATCA 58.191 32.000 0.00 0.00 0.00 2.92
1200 5382 7.267128 ACTGCTTTTTCTTTGTCATTGATCAA 58.733 30.769 11.26 11.26 0.00 2.57
1201 5383 7.929785 ACTGCTTTTTCTTTGTCATTGATCAAT 59.070 29.630 15.36 15.36 0.00 2.57
1204 5386 9.377383 GCTTTTTCTTTGTCATTGATCAATTTG 57.623 29.630 18.41 10.29 0.00 2.32
1207 5389 9.820725 TTTTCTTTGTCATTGATCAATTTGTCT 57.179 25.926 18.41 0.00 0.00 3.41
1213 5395 8.578308 TGTCATTGATCAATTTGTCTTTTCAC 57.422 30.769 18.41 3.57 0.00 3.18
1214 5396 8.196103 TGTCATTGATCAATTTGTCTTTTCACA 58.804 29.630 18.41 5.93 0.00 3.58
1223 5405 9.944663 TCAATTTGTCTTTTCACATAGTACAAC 57.055 29.630 0.00 0.00 0.00 3.32
1224 5406 9.180678 CAATTTGTCTTTTCACATAGTACAACC 57.819 33.333 0.00 0.00 0.00 3.77
1225 5407 7.867305 TTTGTCTTTTCACATAGTACAACCA 57.133 32.000 0.00 0.00 0.00 3.67
1233 5417 8.716646 TTTCACATAGTACAACCATGATACTG 57.283 34.615 0.00 0.00 31.65 2.74
1238 5422 9.515226 ACATAGTACAACCATGATACTGTTTTT 57.485 29.630 0.00 0.00 31.65 1.94
1240 5424 9.733556 ATAGTACAACCATGATACTGTTTTTGA 57.266 29.630 0.00 0.00 31.65 2.69
1244 5428 7.202526 ACAACCATGATACTGTTTTTGAACTG 58.797 34.615 0.00 0.00 0.00 3.16
1245 5429 6.959639 ACCATGATACTGTTTTTGAACTGT 57.040 33.333 0.00 6.95 38.23 3.55
1248 5432 7.147915 ACCATGATACTGTTTTTGAACTGTTGT 60.148 33.333 0.00 0.00 36.47 3.32
1265 5449 9.821662 GAACTGTTGTATAAACATCTTTGTACC 57.178 33.333 0.00 0.00 34.58 3.34
1267 5451 8.780249 ACTGTTGTATAAACATCTTTGTACCAC 58.220 33.333 0.00 0.00 34.58 4.16
1276 5460 7.817418 AACATCTTTGTACCACATTGTTAGT 57.183 32.000 0.00 0.00 34.06 2.24
1277 5461 7.435068 ACATCTTTGTACCACATTGTTAGTC 57.565 36.000 0.00 0.00 33.16 2.59
1278 5462 6.995686 ACATCTTTGTACCACATTGTTAGTCA 59.004 34.615 0.00 0.00 33.16 3.41
1279 5463 7.665559 ACATCTTTGTACCACATTGTTAGTCAT 59.334 33.333 0.00 0.00 33.16 3.06
1280 5464 7.667043 TCTTTGTACCACATTGTTAGTCATC 57.333 36.000 0.00 0.00 0.00 2.92
1281 5465 6.653320 TCTTTGTACCACATTGTTAGTCATCC 59.347 38.462 0.00 0.00 0.00 3.51
1282 5466 5.491323 TGTACCACATTGTTAGTCATCCA 57.509 39.130 0.00 0.00 0.00 3.41
1283 5467 5.242434 TGTACCACATTGTTAGTCATCCAC 58.758 41.667 0.00 0.00 0.00 4.02
1284 5468 4.640771 ACCACATTGTTAGTCATCCACT 57.359 40.909 0.00 0.00 39.41 4.00
1285 5469 5.755409 ACCACATTGTTAGTCATCCACTA 57.245 39.130 0.00 0.00 36.43 2.74
1286 5470 5.734720 ACCACATTGTTAGTCATCCACTAG 58.265 41.667 0.00 0.00 38.90 2.57
1287 5471 5.483937 ACCACATTGTTAGTCATCCACTAGA 59.516 40.000 0.00 0.00 38.90 2.43
1292 5476 9.601217 ACATTGTTAGTCATCCACTAGATTTAC 57.399 33.333 0.00 0.00 38.90 2.01
1302 5486 8.977412 TCATCCACTAGATTTACAGTGTTCATA 58.023 33.333 0.00 0.00 40.47 2.15
1328 5517 7.662604 AAATTCATGAATTTTTCTCCAGTGC 57.337 32.000 31.60 0.00 45.67 4.40
1329 5518 5.787953 TTCATGAATTTTTCTCCAGTGCA 57.212 34.783 3.38 0.00 0.00 4.57
1330 5519 5.988310 TCATGAATTTTTCTCCAGTGCAT 57.012 34.783 0.00 0.00 0.00 3.96
1332 5521 6.761312 TCATGAATTTTTCTCCAGTGCATTT 58.239 32.000 0.00 0.00 0.00 2.32
1335 5524 5.691305 TGAATTTTTCTCCAGTGCATTTTCG 59.309 36.000 0.00 0.00 0.00 3.46
1337 5526 0.881118 TTCTCCAGTGCATTTTCGCC 59.119 50.000 0.00 0.00 0.00 5.54
1339 5528 0.449388 CTCCAGTGCATTTTCGCCTC 59.551 55.000 0.00 0.00 0.00 4.70
1341 5530 0.597568 CCAGTGCATTTTCGCCTCAA 59.402 50.000 0.00 0.00 0.00 3.02
1342 5531 1.203052 CCAGTGCATTTTCGCCTCAAT 59.797 47.619 0.00 0.00 0.00 2.57
1344 5533 3.119531 CCAGTGCATTTTCGCCTCAATAA 60.120 43.478 0.00 0.00 0.00 1.40
1347 5536 3.608073 GTGCATTTTCGCCTCAATAACAC 59.392 43.478 0.00 0.00 0.00 3.32
1348 5537 3.254411 TGCATTTTCGCCTCAATAACACA 59.746 39.130 0.00 0.00 0.00 3.72
1349 5538 4.082300 TGCATTTTCGCCTCAATAACACAT 60.082 37.500 0.00 0.00 0.00 3.21
1350 5539 4.500477 GCATTTTCGCCTCAATAACACATC 59.500 41.667 0.00 0.00 0.00 3.06
1351 5540 5.639757 CATTTTCGCCTCAATAACACATCA 58.360 37.500 0.00 0.00 0.00 3.07
1353 5542 5.484173 TTTCGCCTCAATAACACATCATC 57.516 39.130 0.00 0.00 0.00 2.92
1354 5543 3.123050 TCGCCTCAATAACACATCATCG 58.877 45.455 0.00 0.00 0.00 3.84
1356 5545 2.613595 GCCTCAATAACACATCATCGCA 59.386 45.455 0.00 0.00 0.00 5.10
1357 5546 3.251729 GCCTCAATAACACATCATCGCAT 59.748 43.478 0.00 0.00 0.00 4.73
1358 5547 4.452114 GCCTCAATAACACATCATCGCATA 59.548 41.667 0.00 0.00 0.00 3.14
1360 5549 6.596703 CCTCAATAACACATCATCGCATAAG 58.403 40.000 0.00 0.00 0.00 1.73
1362 5551 7.177498 TCAATAACACATCATCGCATAAGTC 57.823 36.000 0.00 0.00 0.00 3.01
1363 5552 6.202762 TCAATAACACATCATCGCATAAGTCC 59.797 38.462 0.00 0.00 0.00 3.85
1364 5553 3.827008 ACACATCATCGCATAAGTCCT 57.173 42.857 0.00 0.00 0.00 3.85
1365 5554 4.142609 ACACATCATCGCATAAGTCCTT 57.857 40.909 0.00 0.00 0.00 3.36
1366 5555 4.517285 ACACATCATCGCATAAGTCCTTT 58.483 39.130 0.00 0.00 0.00 3.11
1368 5557 5.415701 ACACATCATCGCATAAGTCCTTTTT 59.584 36.000 0.00 0.00 0.00 1.94
1372 5561 5.492895 TCATCGCATAAGTCCTTTTTACCA 58.507 37.500 0.00 0.00 0.00 3.25
1376 5565 5.410439 TCGCATAAGTCCTTTTTACCAAGAC 59.590 40.000 0.00 0.00 0.00 3.01
1377 5566 5.180492 CGCATAAGTCCTTTTTACCAAGACA 59.820 40.000 0.00 0.00 0.00 3.41
1378 5567 6.612306 GCATAAGTCCTTTTTACCAAGACAG 58.388 40.000 0.00 0.00 0.00 3.51
1379 5568 6.430000 GCATAAGTCCTTTTTACCAAGACAGA 59.570 38.462 0.00 0.00 0.00 3.41
1384 5573 7.217906 AGTCCTTTTTACCAAGACAGACTTAG 58.782 38.462 0.00 0.00 37.03 2.18
1385 5574 7.070821 AGTCCTTTTTACCAAGACAGACTTAGA 59.929 37.037 0.00 0.00 37.03 2.10
1386 5575 7.878644 GTCCTTTTTACCAAGACAGACTTAGAT 59.121 37.037 0.00 0.00 37.03 1.98
1387 5576 9.096823 TCCTTTTTACCAAGACAGACTTAGATA 57.903 33.333 0.00 0.00 37.03 1.98
1392 5581 6.980416 ACCAAGACAGACTTAGATATACCC 57.020 41.667 0.00 0.00 37.03 3.69
1393 5582 6.684538 ACCAAGACAGACTTAGATATACCCT 58.315 40.000 0.00 0.00 37.03 4.34
1401 5831 9.030452 ACAGACTTAGATATACCCTGATTGATC 57.970 37.037 0.00 0.00 0.00 2.92
1437 5867 4.695396 TCTGAAACGTTTAAGCAGGTACA 58.305 39.130 19.10 6.78 0.00 2.90
1476 5906 4.160252 ACATATGGGATGAAAAAGTGTGGC 59.840 41.667 7.80 0.00 0.00 5.01
1497 5927 3.668656 GCGTTTAATCAAGTGTGCTTTCC 59.331 43.478 0.00 0.00 31.49 3.13
1585 6018 7.278135 TGCTGCTCTTCTAGTGATGATATTTT 58.722 34.615 0.00 0.00 0.00 1.82
1610 6043 6.034591 CAGAATGGAATTTCTTGCTGATGAC 58.965 40.000 1.86 0.00 36.07 3.06
1634 6067 8.635765 ACATCTCTAGAAGGCTCTTCTATAAG 57.364 38.462 18.93 18.06 32.70 1.73
1636 6069 9.466497 CATCTCTAGAAGGCTCTTCTATAAGAT 57.534 37.037 23.54 23.54 40.92 2.40
1671 6110 2.387952 AGGGGGTGTCCTCATGAAC 58.612 57.895 0.00 0.00 35.43 3.18
1765 6213 8.485976 AGTCTTCTAGCAAGTAATCATCAAAC 57.514 34.615 0.00 0.00 0.00 2.93
1805 6253 6.040166 AGTGGTATGATTTGCTCAATTCCATC 59.960 38.462 0.00 0.00 37.44 3.51
1831 6279 6.166279 GTCATGGACTTACAGAAGATCACAA 58.834 40.000 0.00 0.00 36.45 3.33
1859 6307 9.050601 GTGGAGGAGATGAAAAAGATACTATTG 57.949 37.037 0.00 0.00 0.00 1.90
1937 6385 6.255670 GCATATTTCCGGAAAATTTCAAGGTC 59.744 38.462 32.03 10.21 38.53 3.85
1938 6386 7.547227 CATATTTCCGGAAAATTTCAAGGTCT 58.453 34.615 32.03 14.20 38.53 3.85
1940 6388 6.963083 TTTCCGGAAAATTTCAAGGTCTTA 57.037 33.333 27.12 0.00 32.86 2.10
1945 6393 6.206829 CCGGAAAATTTCAAGGTCTTAAGAGT 59.793 38.462 5.12 0.00 0.00 3.24
1947 6395 7.591426 CGGAAAATTTCAAGGTCTTAAGAGTTG 59.409 37.037 16.56 16.56 0.00 3.16
1948 6396 8.630037 GGAAAATTTCAAGGTCTTAAGAGTTGA 58.370 33.333 19.56 19.56 0.00 3.18
1949 6397 9.452065 GAAAATTTCAAGGTCTTAAGAGTTGAC 57.548 33.333 21.80 11.17 31.57 3.18
2105 6554 0.322546 AAAGGGTAGAAGCTTGCCGG 60.323 55.000 2.10 0.00 0.00 6.13
2133 6582 7.212976 ACATGACATGGTACTTGATCTCATAC 58.787 38.462 19.39 0.00 33.60 2.39
2136 6585 6.544564 TGACATGGTACTTGATCTCATACGTA 59.455 38.462 0.00 0.00 0.00 3.57
2146 6595 4.097437 TGATCTCATACGTACCTTGTCCAC 59.903 45.833 0.00 0.00 0.00 4.02
2168 6617 7.556275 TCCACTGAAGAAAACTTTGTCACTATT 59.444 33.333 0.00 0.00 0.00 1.73
2171 6620 9.178758 ACTGAAGAAAACTTTGTCACTATTCTT 57.821 29.630 0.00 0.00 38.09 2.52
2182 6631 9.823647 CTTTGTCACTATTCTTGATGGTACTAT 57.176 33.333 0.00 0.00 0.00 2.12
2183 6632 9.599866 TTTGTCACTATTCTTGATGGTACTATG 57.400 33.333 0.00 0.00 0.00 2.23
2193 6642 7.907389 TCTTGATGGTACTATGAGAAAAGTGT 58.093 34.615 0.00 0.00 0.00 3.55
2222 6671 4.320023 TGCAAAGTAAGGTTCGCAGATTA 58.680 39.130 0.00 0.00 35.04 1.75
2235 6684 5.694231 TCGCAGATTATCCATCCAAAATG 57.306 39.130 0.00 0.00 31.20 2.32
2243 6692 4.682778 ATCCATCCAAAATGGCAAGATG 57.317 40.909 0.00 0.00 37.47 2.90
2247 6696 5.794726 CATCCAAAATGGCAAGATGGATA 57.205 39.130 22.79 5.65 46.44 2.59
2249 6698 6.765403 CATCCAAAATGGCAAGATGGATATT 58.235 36.000 22.79 7.46 46.44 1.28
2250 6699 6.811634 TCCAAAATGGCAAGATGGATATTT 57.188 33.333 12.71 0.00 37.47 1.40
2251 6700 6.819284 TCCAAAATGGCAAGATGGATATTTC 58.181 36.000 12.71 0.00 37.47 2.17
2258 6707 4.762251 GGCAAGATGGATATTTCTACCACC 59.238 45.833 0.00 0.00 36.49 4.61
2261 6710 5.234466 AGATGGATATTTCTACCACCAGC 57.766 43.478 0.00 0.00 36.49 4.85
2265 6714 4.411869 TGGATATTTCTACCACCAGCATGA 59.588 41.667 0.00 0.00 39.69 3.07
2270 6719 3.500448 TCTACCACCAGCATGAAACAA 57.500 42.857 0.00 0.00 39.69 2.83
2315 6764 9.508642 TTCACACATGGTATAATTGACAAAGTA 57.491 29.630 0.00 0.00 0.00 2.24
2316 6765 8.941977 TCACACATGGTATAATTGACAAAGTAC 58.058 33.333 0.00 0.00 0.00 2.73
2373 6825 7.658575 GTGTGTTGGATTTAGAAGGTTGTACTA 59.341 37.037 0.00 0.00 0.00 1.82
2608 7060 0.619255 TCCGGAATGGGTAGCCTCAA 60.619 55.000 13.11 0.00 38.76 3.02
2784 7236 2.832733 GAGTCCCTAAGTAACCTGCACT 59.167 50.000 0.00 0.00 0.00 4.40
2877 7329 1.492176 CCCCACAGCTCCATAGATTGT 59.508 52.381 0.00 0.00 0.00 2.71
2927 7379 4.095483 CAGACTCTGCCAACATGGATTAAC 59.905 45.833 0.00 0.00 40.96 2.01
2987 7439 2.126031 GAGGAAGTGCGACCGGAC 60.126 66.667 9.46 0.00 36.69 4.79
2995 7447 3.245315 GCGACCGGACGACATTCG 61.245 66.667 29.83 16.77 46.93 3.34
3033 7485 2.120909 GCTCTGCGCTCTCTCTCCT 61.121 63.158 9.73 0.00 35.14 3.69
3161 7613 4.214971 GCAGTGCCATCTATATTTCCACAG 59.785 45.833 2.85 0.00 0.00 3.66
3163 7615 4.660303 AGTGCCATCTATATTTCCACAGGA 59.340 41.667 0.00 0.00 0.00 3.86
3175 7627 1.354031 TCCACAGGAAGCTATGCCAAA 59.646 47.619 0.00 0.00 0.00 3.28
3189 7641 3.876309 TGCCAAAGGTTAAACTCCTCT 57.124 42.857 0.00 0.00 33.76 3.69
3269 7721 2.846827 CCTCCCTTCCCTGAAGTATGTT 59.153 50.000 3.40 0.00 37.92 2.71
3273 7725 3.519510 CCCTTCCCTGAAGTATGTTCAGA 59.480 47.826 17.17 1.04 46.57 3.27
3277 7729 5.102953 TCCCTGAAGTATGTTCAGATTGG 57.897 43.478 17.17 11.66 46.57 3.16
3337 7789 3.005539 AGATGCTGCGGTGAGGGT 61.006 61.111 0.00 0.00 0.00 4.34
3368 7820 3.361158 CATCCCAACGGCGTGCAA 61.361 61.111 15.70 0.00 0.00 4.08
3373 7825 1.206578 CCAACGGCGTGCAACTTAG 59.793 57.895 15.70 0.00 31.75 2.18
3379 7831 1.753956 GGCGTGCAACTTAGTTTGTG 58.246 50.000 0.00 0.00 31.75 3.33
3433 7885 1.513158 CTACTCCACCTCCACGCAG 59.487 63.158 0.00 0.00 0.00 5.18
3483 8105 4.039004 CACAAGTCCCAAATGTTCAATCCA 59.961 41.667 0.00 0.00 0.00 3.41
3487 8109 4.467438 AGTCCCAAATGTTCAATCCATTCC 59.533 41.667 0.00 0.00 31.49 3.01
3497 8119 6.546484 TGTTCAATCCATTCCTCTCTCTTTT 58.454 36.000 0.00 0.00 0.00 2.27
3498 8120 6.432162 TGTTCAATCCATTCCTCTCTCTTTTG 59.568 38.462 0.00 0.00 0.00 2.44
3502 8124 8.163408 TCAATCCATTCCTCTCTCTTTTGTTTA 58.837 33.333 0.00 0.00 0.00 2.01
3511 8133 9.573166 TCCTCTCTCTTTTGTTTATCAAATTCA 57.427 29.630 0.00 0.00 44.15 2.57
3523 8145 2.287584 TCAAATTCAGGGGGAGGATGT 58.712 47.619 0.00 0.00 0.00 3.06
3582 8218 9.702726 CCTCTGTTATACATACATTGTTTTTCG 57.297 33.333 0.00 0.00 39.87 3.46
3639 8280 3.996363 GCCATTGTTTCCAATTTCAGGTC 59.004 43.478 0.00 0.00 39.28 3.85
3647 8288 2.170607 TCCAATTTCAGGTCGAGGGATC 59.829 50.000 0.00 0.00 0.00 3.36
3763 8424 7.555195 TCGATCAGTCCATTACTACTGTCTAAA 59.445 37.037 0.00 0.00 42.96 1.85
3764 8425 8.188799 CGATCAGTCCATTACTACTGTCTAAAA 58.811 37.037 0.00 0.00 42.96 1.52
3765 8426 9.871238 GATCAGTCCATTACTACTGTCTAAAAA 57.129 33.333 0.00 0.00 42.96 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.018973 CGAACCAACCACACACCG 58.981 61.111 0.00 0.00 0.00 4.94
2 3 2.719354 GCGAACCAACCACACACC 59.281 61.111 0.00 0.00 0.00 4.16
3 4 2.719354 GGCGAACCAACCACACAC 59.281 61.111 0.00 0.00 35.26 3.82
4 5 2.897846 CGGCGAACCAACCACACA 60.898 61.111 0.00 0.00 34.57 3.72
5 6 3.656045 CCGGCGAACCAACCACAC 61.656 66.667 9.30 0.00 34.57 3.82
6 7 4.178169 ACCGGCGAACCAACCACA 62.178 61.111 9.30 0.00 34.57 4.17
7 8 3.656045 CACCGGCGAACCAACCAC 61.656 66.667 9.30 0.00 34.57 4.16
9 10 4.941309 ACCACCGGCGAACCAACC 62.941 66.667 9.30 0.00 34.57 3.77
10 11 3.656045 CACCACCGGCGAACCAAC 61.656 66.667 9.30 0.00 34.57 3.77
21 22 1.964373 AATCAACGTCGGCACCACC 60.964 57.895 0.00 0.00 0.00 4.61
22 23 1.206578 CAATCAACGTCGGCACCAC 59.793 57.895 0.00 0.00 0.00 4.16
24 25 1.908066 GACCAATCAACGTCGGCACC 61.908 60.000 0.00 0.00 0.00 5.01
25 26 1.495951 GACCAATCAACGTCGGCAC 59.504 57.895 0.00 0.00 0.00 5.01
26 27 1.669760 GGACCAATCAACGTCGGCA 60.670 57.895 0.00 0.00 0.00 5.69
27 28 1.635663 CTGGACCAATCAACGTCGGC 61.636 60.000 0.00 0.00 0.00 5.54
28 29 1.635663 GCTGGACCAATCAACGTCGG 61.636 60.000 0.00 0.00 0.00 4.79
30 31 2.171635 GGCTGGACCAATCAACGTC 58.828 57.895 0.00 0.00 38.86 4.34
31 32 4.397348 GGCTGGACCAATCAACGT 57.603 55.556 0.00 0.00 38.86 3.99
40 41 2.125106 CGGCTAGTTGGCTGGACC 60.125 66.667 0.00 0.00 39.32 4.46
41 42 1.741770 CACGGCTAGTTGGCTGGAC 60.742 63.158 1.33 0.00 42.38 4.02
42 43 1.764571 AACACGGCTAGTTGGCTGGA 61.765 55.000 1.33 0.00 42.38 3.86
44 45 0.238289 CAAACACGGCTAGTTGGCTG 59.762 55.000 0.00 0.00 43.58 4.85
45 46 0.179029 ACAAACACGGCTAGTTGGCT 60.179 50.000 0.00 0.00 39.32 4.75
47 48 0.872388 GGACAAACACGGCTAGTTGG 59.128 55.000 0.00 0.00 0.00 3.77
48 49 1.531149 CAGGACAAACACGGCTAGTTG 59.469 52.381 0.00 0.00 0.00 3.16
55 56 0.105964 TGACTCCAGGACAAACACGG 59.894 55.000 0.00 0.00 0.00 4.94
56 57 1.948104 TTGACTCCAGGACAAACACG 58.052 50.000 0.00 0.00 0.00 4.49
59 60 2.229792 TGCATTGACTCCAGGACAAAC 58.770 47.619 0.00 0.00 0.00 2.93
61 62 2.821378 CAATGCATTGACTCCAGGACAA 59.179 45.455 31.47 0.00 40.14 3.18
62 63 2.040145 TCAATGCATTGACTCCAGGACA 59.960 45.455 33.08 11.44 41.51 4.02
63 64 2.681848 CTCAATGCATTGACTCCAGGAC 59.318 50.000 33.08 0.00 41.51 3.85
65 66 2.719739 ACTCAATGCATTGACTCCAGG 58.280 47.619 33.08 24.69 41.51 4.45
66 67 3.504906 ACAACTCAATGCATTGACTCCAG 59.495 43.478 33.08 25.30 41.51 3.86
67 68 3.489355 ACAACTCAATGCATTGACTCCA 58.511 40.909 33.08 16.23 41.51 3.86
69 70 3.671928 GCAACAACTCAATGCATTGACTC 59.328 43.478 33.08 15.33 41.51 3.36
70 71 3.319972 AGCAACAACTCAATGCATTGACT 59.680 39.130 33.08 24.05 41.51 3.41
71 72 3.645884 AGCAACAACTCAATGCATTGAC 58.354 40.909 33.08 22.45 41.51 3.18
72 73 4.325028 AAGCAACAACTCAATGCATTGA 57.675 36.364 33.85 33.85 43.94 2.57
73 74 6.018913 TGTTTAAGCAACAACTCAATGCATTG 60.019 34.615 29.75 29.75 42.76 2.82
75 76 5.599732 TGTTTAAGCAACAACTCAATGCAT 58.400 33.333 0.00 0.00 42.76 3.96
89 90 2.896044 TCAATGTGGCCATGTTTAAGCA 59.104 40.909 9.72 0.00 0.00 3.91
90 91 3.056607 ACTCAATGTGGCCATGTTTAAGC 60.057 43.478 9.72 0.00 0.00 3.09
91 92 4.789012 ACTCAATGTGGCCATGTTTAAG 57.211 40.909 9.72 9.31 0.00 1.85
93 94 3.894427 ACAACTCAATGTGGCCATGTTTA 59.106 39.130 9.72 0.00 30.82 2.01
94 95 2.699846 ACAACTCAATGTGGCCATGTTT 59.300 40.909 9.72 0.00 30.82 2.83
96 97 1.999648 ACAACTCAATGTGGCCATGT 58.000 45.000 9.72 3.02 30.82 3.21
97 98 2.679450 CAACAACTCAATGTGGCCATG 58.321 47.619 9.72 2.84 32.81 3.66
102 103 5.347342 TGTTTAAGCAACAACTCAATGTGG 58.653 37.500 0.00 0.00 42.76 4.17
111 112 6.640499 TCAGTATGCATTGTTTAAGCAACAAC 59.360 34.615 3.54 0.99 46.85 3.32
113 114 6.324561 TCAGTATGCATTGTTTAAGCAACA 57.675 33.333 3.54 2.59 42.15 3.33
114 115 5.801947 CCTCAGTATGCATTGTTTAAGCAAC 59.198 40.000 3.54 0.00 42.15 4.17
115 116 5.709631 TCCTCAGTATGCATTGTTTAAGCAA 59.290 36.000 3.54 7.22 42.15 3.91
116 117 5.252547 TCCTCAGTATGCATTGTTTAAGCA 58.747 37.500 3.54 0.00 43.14 3.91
117 118 5.220931 CCTCCTCAGTATGCATTGTTTAAGC 60.221 44.000 3.54 0.00 34.76 3.09
118 119 5.297776 CCCTCCTCAGTATGCATTGTTTAAG 59.702 44.000 3.54 0.00 34.76 1.85
119 120 5.192927 CCCTCCTCAGTATGCATTGTTTAA 58.807 41.667 3.54 0.00 34.76 1.52
120 121 4.780815 CCCTCCTCAGTATGCATTGTTTA 58.219 43.478 3.54 0.00 34.76 2.01
122 123 2.684927 GCCCTCCTCAGTATGCATTGTT 60.685 50.000 3.54 0.00 34.76 2.83
123 124 1.133976 GCCCTCCTCAGTATGCATTGT 60.134 52.381 3.54 0.00 34.76 2.71
124 125 1.142465 AGCCCTCCTCAGTATGCATTG 59.858 52.381 3.54 0.00 34.76 2.82
128 129 2.495669 GAGATAGCCCTCCTCAGTATGC 59.504 54.545 0.00 0.00 34.76 3.14
130 131 6.416044 AATAGAGATAGCCCTCCTCAGTAT 57.584 41.667 0.00 0.00 33.76 2.12
132 133 4.757997 AATAGAGATAGCCCTCCTCAGT 57.242 45.455 0.00 0.00 33.76 3.41
133 134 6.432403 AAAAATAGAGATAGCCCTCCTCAG 57.568 41.667 0.00 0.00 33.76 3.35
158 159 5.288232 CGTCATTGTCTTGTGCAAAAGAAAA 59.712 36.000 21.98 21.98 37.70 2.29
161 162 3.791789 GCGTCATTGTCTTGTGCAAAAGA 60.792 43.478 15.62 15.62 33.77 2.52
162 163 2.468777 GCGTCATTGTCTTGTGCAAAAG 59.531 45.455 10.64 10.64 0.00 2.27
163 164 2.159324 TGCGTCATTGTCTTGTGCAAAA 60.159 40.909 0.00 0.00 0.00 2.44
164 165 1.403323 TGCGTCATTGTCTTGTGCAAA 59.597 42.857 0.00 0.00 0.00 3.68
165 166 1.020437 TGCGTCATTGTCTTGTGCAA 58.980 45.000 0.00 0.00 0.00 4.08
170 171 1.599071 AGTGTGTGCGTCATTGTCTTG 59.401 47.619 0.00 0.00 0.00 3.02
171 172 1.953559 AGTGTGTGCGTCATTGTCTT 58.046 45.000 0.00 0.00 0.00 3.01
172 173 2.812358 TAGTGTGTGCGTCATTGTCT 57.188 45.000 0.00 0.00 0.00 3.41
173 174 3.424829 CCATTAGTGTGTGCGTCATTGTC 60.425 47.826 0.00 0.00 0.00 3.18
175 176 2.483877 ACCATTAGTGTGTGCGTCATTG 59.516 45.455 0.00 0.00 0.00 2.82
176 177 2.742053 GACCATTAGTGTGTGCGTCATT 59.258 45.455 0.00 0.00 0.00 2.57
177 178 2.289382 TGACCATTAGTGTGTGCGTCAT 60.289 45.455 0.00 0.00 0.00 3.06
179 180 1.459592 GTGACCATTAGTGTGTGCGTC 59.540 52.381 0.00 0.00 0.00 5.19
180 181 1.070134 AGTGACCATTAGTGTGTGCGT 59.930 47.619 0.00 0.00 0.00 5.24
181 182 1.460743 CAGTGACCATTAGTGTGTGCG 59.539 52.381 0.00 0.00 0.00 5.34
185 186 3.476552 ACCAACAGTGACCATTAGTGTG 58.523 45.455 0.00 0.00 32.34 3.82
186 187 3.857157 ACCAACAGTGACCATTAGTGT 57.143 42.857 0.00 0.00 33.31 3.55
187 188 4.821805 AGAAACCAACAGTGACCATTAGTG 59.178 41.667 0.00 0.00 0.00 2.74
188 189 5.048846 AGAAACCAACAGTGACCATTAGT 57.951 39.130 0.00 0.00 0.00 2.24
189 190 5.048713 GGAAGAAACCAACAGTGACCATTAG 60.049 44.000 0.00 0.00 0.00 1.73
190 191 4.825085 GGAAGAAACCAACAGTGACCATTA 59.175 41.667 0.00 0.00 0.00 1.90
191 192 3.636764 GGAAGAAACCAACAGTGACCATT 59.363 43.478 0.00 0.00 0.00 3.16
192 193 3.117512 AGGAAGAAACCAACAGTGACCAT 60.118 43.478 0.00 0.00 0.00 3.55
195 196 4.704965 AGTAGGAAGAAACCAACAGTGAC 58.295 43.478 0.00 0.00 0.00 3.67
199 200 5.377478 AGGAAAGTAGGAAGAAACCAACAG 58.623 41.667 0.00 0.00 0.00 3.16
201 202 5.411977 GCTAGGAAAGTAGGAAGAAACCAAC 59.588 44.000 0.00 0.00 0.00 3.77
202 203 5.309806 AGCTAGGAAAGTAGGAAGAAACCAA 59.690 40.000 0.00 0.00 0.00 3.67
203 204 4.844655 AGCTAGGAAAGTAGGAAGAAACCA 59.155 41.667 0.00 0.00 0.00 3.67
204 205 5.423704 AGCTAGGAAAGTAGGAAGAAACC 57.576 43.478 0.00 0.00 0.00 3.27
211 212 6.717540 CAGATAAGCTAGCTAGGAAAGTAGGA 59.282 42.308 19.70 0.00 0.00 2.94
212 213 6.571537 GCAGATAAGCTAGCTAGGAAAGTAGG 60.572 46.154 19.70 1.77 0.00 3.18
214 215 5.833667 TGCAGATAAGCTAGCTAGGAAAGTA 59.166 40.000 19.70 4.99 34.99 2.24
219 220 4.862902 CTTGCAGATAAGCTAGCTAGGA 57.137 45.455 19.70 7.04 31.19 2.94
221 222 4.862902 TCCTTGCAGATAAGCTAGCTAG 57.137 45.455 19.70 16.84 36.29 3.42
222 223 5.360591 GTTTCCTTGCAGATAAGCTAGCTA 58.639 41.667 19.70 7.01 36.29 3.32
224 225 3.313803 GGTTTCCTTGCAGATAAGCTAGC 59.686 47.826 6.62 6.62 36.29 3.42
226 227 4.568072 TGGTTTCCTTGCAGATAAGCTA 57.432 40.909 0.00 0.00 34.99 3.32
227 228 3.439857 TGGTTTCCTTGCAGATAAGCT 57.560 42.857 0.00 0.00 34.99 3.74
228 229 3.758554 TCTTGGTTTCCTTGCAGATAAGC 59.241 43.478 0.00 0.00 0.00 3.09
230 231 5.336690 GCAATCTTGGTTTCCTTGCAGATAA 60.337 40.000 0.00 0.00 41.33 1.75
231 232 4.158394 GCAATCTTGGTTTCCTTGCAGATA 59.842 41.667 0.00 0.00 41.33 1.98
232 233 3.056322 GCAATCTTGGTTTCCTTGCAGAT 60.056 43.478 0.00 0.00 41.33 2.90
236 237 2.224018 TGTGCAATCTTGGTTTCCTTGC 60.224 45.455 0.00 0.00 41.88 4.01
238 239 3.068590 CAGTGTGCAATCTTGGTTTCCTT 59.931 43.478 0.00 0.00 0.00 3.36
240 241 2.863704 GCAGTGTGCAATCTTGGTTTCC 60.864 50.000 0.00 0.00 44.26 3.13
241 242 2.397549 GCAGTGTGCAATCTTGGTTTC 58.602 47.619 0.00 0.00 44.26 2.78
253 254 0.250727 TAAGGGAGTTGGCAGTGTGC 60.251 55.000 0.00 0.00 44.08 4.57
255 256 1.136828 TGTAAGGGAGTTGGCAGTGT 58.863 50.000 0.00 0.00 0.00 3.55
256 257 1.523758 GTGTAAGGGAGTTGGCAGTG 58.476 55.000 0.00 0.00 0.00 3.66
257 258 0.400594 GGTGTAAGGGAGTTGGCAGT 59.599 55.000 0.00 0.00 0.00 4.40
260 261 0.111639 TTGGGTGTAAGGGAGTTGGC 59.888 55.000 0.00 0.00 0.00 4.52
262 263 4.461431 GGTATTTTGGGTGTAAGGGAGTTG 59.539 45.833 0.00 0.00 0.00 3.16
263 264 4.106663 TGGTATTTTGGGTGTAAGGGAGTT 59.893 41.667 0.00 0.00 0.00 3.01
264 265 3.658705 TGGTATTTTGGGTGTAAGGGAGT 59.341 43.478 0.00 0.00 0.00 3.85
265 266 4.014406 GTGGTATTTTGGGTGTAAGGGAG 58.986 47.826 0.00 0.00 0.00 4.30
266 267 3.245336 GGTGGTATTTTGGGTGTAAGGGA 60.245 47.826 0.00 0.00 0.00 4.20
268 269 3.508402 GTGGTGGTATTTTGGGTGTAAGG 59.492 47.826 0.00 0.00 0.00 2.69
271 272 3.878237 TGTGGTGGTATTTTGGGTGTA 57.122 42.857 0.00 0.00 0.00 2.90
272 273 2.696187 GTTGTGGTGGTATTTTGGGTGT 59.304 45.455 0.00 0.00 0.00 4.16
274 275 2.962421 CTGTTGTGGTGGTATTTTGGGT 59.038 45.455 0.00 0.00 0.00 4.51
290 291 4.302455 CTTGACCTCTCTACACACTGTTG 58.698 47.826 0.00 0.00 0.00 3.33
291 292 3.243907 GCTTGACCTCTCTACACACTGTT 60.244 47.826 0.00 0.00 0.00 3.16
292 293 2.297597 GCTTGACCTCTCTACACACTGT 59.702 50.000 0.00 0.00 0.00 3.55
293 294 2.560542 AGCTTGACCTCTCTACACACTG 59.439 50.000 0.00 0.00 0.00 3.66
294 295 2.883026 AGCTTGACCTCTCTACACACT 58.117 47.619 0.00 0.00 0.00 3.55
296 297 3.090037 GGTAGCTTGACCTCTCTACACA 58.910 50.000 0.00 0.00 36.47 3.72
297 298 3.786516 GGTAGCTTGACCTCTCTACAC 57.213 52.381 0.00 0.00 36.47 2.90
315 316 0.394565 GCGATCTCCATGGCTAAGGT 59.605 55.000 6.96 0.00 31.23 3.50
317 318 0.394192 TGGCGATCTCCATGGCTAAG 59.606 55.000 6.96 0.00 34.28 2.18
318 319 1.059098 ATGGCGATCTCCATGGCTAA 58.941 50.000 16.48 0.00 44.72 3.09
359 4514 3.702048 AGGCCGCCAAGCTTCGTA 61.702 61.111 13.15 0.00 0.00 3.43
386 4541 0.687354 GCTTCTCCAGGGTGAACTCA 59.313 55.000 0.00 0.00 0.00 3.41
422 4577 5.221165 GGTTAGCTCTATGACAAGAGACTCC 60.221 48.000 14.89 9.10 44.93 3.85
436 4591 2.738643 GCGTGCATCAAGGTTAGCTCTA 60.739 50.000 0.00 0.00 0.00 2.43
443 4598 2.956987 GCAGCGTGCATCAAGGTT 59.043 55.556 0.00 0.00 44.26 3.50
487 4642 0.255318 CCCCTCATCAAGCTGCTCTT 59.745 55.000 1.00 0.00 34.78 2.85
567 4725 2.812836 TCTTCCACATGCACCATCAT 57.187 45.000 0.00 0.00 0.00 2.45
569 4727 2.357009 GTCATCTTCCACATGCACCATC 59.643 50.000 0.00 0.00 0.00 3.51
584 4742 0.900182 TGACAGGCTCACCGTCATCT 60.900 55.000 1.61 0.00 41.42 2.90
599 4757 7.453393 ACTTCTTGATTCTATTCTGGTTGACA 58.547 34.615 0.00 0.00 0.00 3.58
601 4759 8.156820 TCAACTTCTTGATTCTATTCTGGTTGA 58.843 33.333 0.00 0.00 36.77 3.18
640 4801 6.242396 TCCCTTCCGTTCTTGAATAATTTGA 58.758 36.000 0.00 0.00 0.00 2.69
656 4817 1.301244 CCGATGCAGATCCCTTCCG 60.301 63.158 0.00 0.00 0.00 4.30
659 4820 3.197333 CAGATATCCGATGCAGATCCCTT 59.803 47.826 0.00 0.00 0.00 3.95
661 4822 2.762887 TCAGATATCCGATGCAGATCCC 59.237 50.000 0.00 0.00 0.00 3.85
668 4829 5.182487 TCTAGAGAGTCAGATATCCGATGC 58.818 45.833 0.00 0.00 0.00 3.91
683 4844 3.370104 ACCCATCACCACTTCTAGAGAG 58.630 50.000 0.00 0.00 0.00 3.20
684 4845 3.245622 TGACCCATCACCACTTCTAGAGA 60.246 47.826 0.00 0.00 0.00 3.10
694 4855 1.340017 GCTTAGCTTGACCCATCACCA 60.340 52.381 0.00 0.00 33.38 4.17
695 4856 1.340017 TGCTTAGCTTGACCCATCACC 60.340 52.381 5.60 0.00 33.38 4.02
699 4860 2.440409 CAACTGCTTAGCTTGACCCAT 58.560 47.619 5.60 0.00 0.00 4.00
701 4862 1.168714 CCAACTGCTTAGCTTGACCC 58.831 55.000 5.60 0.00 0.00 4.46
727 4888 3.273434 TCTTGCTCATATCTTTTGCGCT 58.727 40.909 9.73 0.00 0.00 5.92
774 4935 0.889186 AACACACGAGGGTCAATGCC 60.889 55.000 0.00 0.00 0.00 4.40
792 4953 4.466015 TGTCACATCTGTGTATAGAGCCAA 59.534 41.667 9.96 0.00 45.76 4.52
827 4988 7.362662 TCAACTTGTCTTGTGCTTATTTGATC 58.637 34.615 0.00 0.00 0.00 2.92
830 4991 7.935338 AATCAACTTGTCTTGTGCTTATTTG 57.065 32.000 0.00 0.00 0.00 2.32
834 4995 7.561021 TGTTAATCAACTTGTCTTGTGCTTA 57.439 32.000 0.00 0.00 35.56 3.09
837 4998 6.208644 ACATGTTAATCAACTTGTCTTGTGC 58.791 36.000 0.00 0.00 45.09 4.57
841 5002 8.131100 CAGTCAACATGTTAATCAACTTGTCTT 58.869 33.333 11.53 0.00 46.58 3.01
854 5015 2.058705 TCACCCCCAGTCAACATGTTA 58.941 47.619 11.53 0.00 0.00 2.41
868 5029 3.019564 CTCTTCAACCAATCATCACCCC 58.980 50.000 0.00 0.00 0.00 4.95
889 5050 5.873164 ACAACAGATACCGTCTTTATTGGAC 59.127 40.000 0.00 0.00 34.00 4.02
896 5057 4.345859 TCCAACAACAGATACCGTCTTT 57.654 40.909 0.00 0.00 34.00 2.52
927 5108 9.167311 ACTTTGATCTTATCATACACCACTTTC 57.833 33.333 0.00 0.00 39.39 2.62
954 5135 2.028561 AGGCCCCACAATCAAAATGT 57.971 45.000 0.00 0.00 0.00 2.71
957 5138 2.122768 ACAAAGGCCCCACAATCAAAA 58.877 42.857 0.00 0.00 0.00 2.44
969 5150 3.632145 TCTGAGAAACTGAAACAAAGGCC 59.368 43.478 0.00 0.00 0.00 5.19
972 5153 6.442112 GGGATTCTGAGAAACTGAAACAAAG 58.558 40.000 0.00 0.00 39.25 2.77
1032 5213 8.256611 TGCATGAATACTTCTTCTTGTCTAAC 57.743 34.615 0.00 0.00 34.48 2.34
1033 5214 9.453572 AATGCATGAATACTTCTTCTTGTCTAA 57.546 29.630 0.00 0.00 34.48 2.10
1035 5216 7.609146 TGAATGCATGAATACTTCTTCTTGTCT 59.391 33.333 0.00 0.00 34.48 3.41
1055 5236 5.474532 TCATCCCTTATTGCACTATGAATGC 59.525 40.000 0.00 0.00 43.68 3.56
1086 5268 6.595772 AATTCACTGAGTTCATCGATAAGC 57.404 37.500 0.00 0.00 0.00 3.09
1089 5271 9.869757 TTAAGAAATTCACTGAGTTCATCGATA 57.130 29.630 0.00 0.00 0.00 2.92
1103 5285 6.560253 TGGTCTTGCTCTTAAGAAATTCAC 57.440 37.500 6.63 1.37 38.33 3.18
1116 5298 7.538575 TGCTCTTAATAAATTTGGTCTTGCTC 58.461 34.615 0.00 0.00 0.00 4.26
1117 5299 7.466746 TGCTCTTAATAAATTTGGTCTTGCT 57.533 32.000 0.00 0.00 0.00 3.91
1132 5314 8.146412 GGCAAGGAATTCATTATTGCTCTTAAT 58.854 33.333 23.92 0.00 43.28 1.40
1133 5315 7.123997 TGGCAAGGAATTCATTATTGCTCTTAA 59.876 33.333 23.92 11.17 43.28 1.85
1135 5317 5.422970 TGGCAAGGAATTCATTATTGCTCTT 59.577 36.000 23.92 8.60 43.28 2.85
1136 5318 4.957954 TGGCAAGGAATTCATTATTGCTCT 59.042 37.500 23.92 3.93 43.28 4.09
1137 5319 5.266733 TGGCAAGGAATTCATTATTGCTC 57.733 39.130 23.92 18.06 43.28 4.26
1138 5320 5.046448 TGTTGGCAAGGAATTCATTATTGCT 60.046 36.000 23.92 5.08 45.67 3.91
1139 5321 5.177326 TGTTGGCAAGGAATTCATTATTGC 58.823 37.500 20.03 20.03 39.72 3.56
1140 5322 7.298507 CTTGTTGGCAAGGAATTCATTATTG 57.701 36.000 4.82 6.34 46.17 1.90
1154 5336 1.202989 TGGCATACCTCTTGTTGGCAA 60.203 47.619 0.00 0.00 37.49 4.52
1155 5337 0.403655 TGGCATACCTCTTGTTGGCA 59.596 50.000 0.00 0.00 37.81 4.92
1156 5338 1.202348 GTTGGCATACCTCTTGTTGGC 59.798 52.381 0.00 0.00 36.63 4.52
1157 5339 2.489329 CAGTTGGCATACCTCTTGTTGG 59.511 50.000 0.00 0.00 36.63 3.77
1158 5340 2.095059 GCAGTTGGCATACCTCTTGTTG 60.095 50.000 0.00 0.00 43.97 3.33
1159 5341 2.162681 GCAGTTGGCATACCTCTTGTT 58.837 47.619 0.00 0.00 43.97 2.83
1160 5342 1.826385 GCAGTTGGCATACCTCTTGT 58.174 50.000 0.00 0.00 43.97 3.16
1167 5349 8.425429 ATGACAAAGAAAAAGCAGTTGGCATAC 61.425 37.037 1.27 0.00 44.22 2.39
1168 5350 6.462768 ATGACAAAGAAAAAGCAGTTGGCATA 60.463 34.615 1.27 0.00 44.22 3.14
1171 5353 3.520569 TGACAAAGAAAAAGCAGTTGGC 58.479 40.909 0.00 0.00 45.30 4.52
1172 5354 5.811613 TCAATGACAAAGAAAAAGCAGTTGG 59.188 36.000 0.00 0.00 0.00 3.77
1173 5355 6.890663 TCAATGACAAAGAAAAAGCAGTTG 57.109 33.333 0.00 0.00 0.00 3.16
1174 5356 7.267128 TGATCAATGACAAAGAAAAAGCAGTT 58.733 30.769 0.00 0.00 0.00 3.16
1175 5357 6.808829 TGATCAATGACAAAGAAAAAGCAGT 58.191 32.000 0.00 0.00 0.00 4.40
1176 5358 7.703298 TTGATCAATGACAAAGAAAAAGCAG 57.297 32.000 3.38 0.00 0.00 4.24
1188 5370 8.196103 TGTGAAAAGACAAATTGATCAATGACA 58.804 29.630 21.39 5.02 0.00 3.58
1189 5371 8.578308 TGTGAAAAGACAAATTGATCAATGAC 57.422 30.769 21.39 11.79 0.00 3.06
1197 5379 9.944663 GTTGTACTATGTGAAAAGACAAATTGA 57.055 29.630 0.00 0.00 0.00 2.57
1199 5381 8.908903 TGGTTGTACTATGTGAAAAGACAAATT 58.091 29.630 0.00 0.00 0.00 1.82
1200 5382 8.458573 TGGTTGTACTATGTGAAAAGACAAAT 57.541 30.769 0.00 0.00 0.00 2.32
1201 5383 7.867305 TGGTTGTACTATGTGAAAAGACAAA 57.133 32.000 0.00 0.00 0.00 2.83
1204 5386 7.667043 TCATGGTTGTACTATGTGAAAAGAC 57.333 36.000 0.00 0.00 38.13 3.01
1207 5389 9.161629 CAGTATCATGGTTGTACTATGTGAAAA 57.838 33.333 0.00 0.00 38.13 2.29
1213 5395 9.773328 CAAAAACAGTATCATGGTTGTACTATG 57.227 33.333 0.00 0.00 38.28 2.23
1214 5396 9.733556 TCAAAAACAGTATCATGGTTGTACTAT 57.266 29.630 0.00 0.00 28.32 2.12
1220 5402 7.202526 ACAGTTCAAAAACAGTATCATGGTTG 58.797 34.615 0.00 0.00 37.88 3.77
1223 5405 7.202526 ACAACAGTTCAAAAACAGTATCATGG 58.797 34.615 0.00 0.00 34.39 3.66
1224 5406 9.897744 ATACAACAGTTCAAAAACAGTATCATG 57.102 29.630 0.00 0.00 34.39 3.07
1240 5424 9.344772 TGGTACAAAGATGTTTATACAACAGTT 57.655 29.630 6.16 0.00 41.05 3.16
1252 5436 7.500892 TGACTAACAATGTGGTACAAAGATGTT 59.499 33.333 0.00 3.26 44.16 2.71
1253 5437 6.995686 TGACTAACAATGTGGTACAAAGATGT 59.004 34.615 0.00 0.00 44.16 3.06
1260 5444 5.012664 AGTGGATGACTAACAATGTGGTACA 59.987 40.000 0.00 0.00 30.86 2.90
1261 5445 5.488341 AGTGGATGACTAACAATGTGGTAC 58.512 41.667 0.00 0.00 30.86 3.34
1265 5449 8.498054 AAATCTAGTGGATGACTAACAATGTG 57.502 34.615 0.00 0.00 36.69 3.21
1267 5451 9.599866 TGTAAATCTAGTGGATGACTAACAATG 57.400 33.333 0.00 0.00 36.69 2.82
1275 5459 7.097192 TGAACACTGTAAATCTAGTGGATGAC 58.903 38.462 8.95 0.00 46.52 3.06
1276 5460 7.239763 TGAACACTGTAAATCTAGTGGATGA 57.760 36.000 8.95 0.00 46.52 2.92
1277 5461 9.770097 ATATGAACACTGTAAATCTAGTGGATG 57.230 33.333 8.95 0.00 46.52 3.51
1302 5486 9.374838 GCACTGGAGAAAAATTCATGAATTTAT 57.625 29.630 35.08 26.39 46.76 1.40
1312 5496 5.388786 GCGAAAATGCACTGGAGAAAAATTC 60.389 40.000 0.00 0.00 34.15 2.17
1320 5509 0.449388 GAGGCGAAAATGCACTGGAG 59.551 55.000 0.00 0.00 36.28 3.86
1321 5510 0.250684 TGAGGCGAAAATGCACTGGA 60.251 50.000 0.00 0.00 36.28 3.86
1322 5511 0.597568 TTGAGGCGAAAATGCACTGG 59.402 50.000 0.00 0.00 36.28 4.00
1323 5512 2.642139 ATTGAGGCGAAAATGCACTG 57.358 45.000 0.00 0.00 36.28 3.66
1324 5513 3.505680 TGTTATTGAGGCGAAAATGCACT 59.494 39.130 0.00 0.00 36.28 4.40
1325 5514 3.608073 GTGTTATTGAGGCGAAAATGCAC 59.392 43.478 0.00 0.00 36.28 4.57
1327 5516 3.832276 TGTGTTATTGAGGCGAAAATGC 58.168 40.909 0.00 0.00 0.00 3.56
1328 5517 5.639757 TGATGTGTTATTGAGGCGAAAATG 58.360 37.500 0.00 0.00 0.00 2.32
1329 5518 5.895636 TGATGTGTTATTGAGGCGAAAAT 57.104 34.783 0.00 0.00 0.00 1.82
1330 5519 5.447144 CGATGATGTGTTATTGAGGCGAAAA 60.447 40.000 0.00 0.00 0.00 2.29
1332 5521 3.555547 CGATGATGTGTTATTGAGGCGAA 59.444 43.478 0.00 0.00 0.00 4.70
1335 5524 2.613595 TGCGATGATGTGTTATTGAGGC 59.386 45.455 0.00 0.00 0.00 4.70
1337 5526 7.182361 ACTTATGCGATGATGTGTTATTGAG 57.818 36.000 0.00 0.00 0.00 3.02
1339 5528 6.203530 AGGACTTATGCGATGATGTGTTATTG 59.796 38.462 0.00 0.00 0.00 1.90
1341 5530 5.858381 AGGACTTATGCGATGATGTGTTAT 58.142 37.500 0.00 0.00 0.00 1.89
1342 5531 5.276461 AGGACTTATGCGATGATGTGTTA 57.724 39.130 0.00 0.00 0.00 2.41
1344 5533 3.827008 AGGACTTATGCGATGATGTGT 57.173 42.857 0.00 0.00 0.00 3.72
1347 5536 6.038161 TGGTAAAAAGGACTTATGCGATGATG 59.962 38.462 0.00 0.00 0.00 3.07
1348 5537 6.119536 TGGTAAAAAGGACTTATGCGATGAT 58.880 36.000 0.00 0.00 0.00 2.45
1349 5538 5.492895 TGGTAAAAAGGACTTATGCGATGA 58.507 37.500 0.00 0.00 0.00 2.92
1350 5539 5.811399 TGGTAAAAAGGACTTATGCGATG 57.189 39.130 0.00 0.00 0.00 3.84
1351 5540 6.093633 GTCTTGGTAAAAAGGACTTATGCGAT 59.906 38.462 0.00 0.00 0.00 4.58
1353 5542 5.180492 TGTCTTGGTAAAAAGGACTTATGCG 59.820 40.000 0.00 0.00 0.00 4.73
1354 5543 6.430000 TCTGTCTTGGTAAAAAGGACTTATGC 59.570 38.462 0.00 0.00 0.00 3.14
1356 5545 7.746703 AGTCTGTCTTGGTAAAAAGGACTTAT 58.253 34.615 0.00 0.00 28.04 1.73
1357 5546 7.133133 AGTCTGTCTTGGTAAAAAGGACTTA 57.867 36.000 0.00 0.00 28.04 2.24
1358 5547 6.002653 AGTCTGTCTTGGTAAAAAGGACTT 57.997 37.500 0.00 0.00 28.04 3.01
1360 5549 7.215085 TCTAAGTCTGTCTTGGTAAAAAGGAC 58.785 38.462 0.00 0.00 37.56 3.85
1362 5551 9.892130 ATATCTAAGTCTGTCTTGGTAAAAAGG 57.108 33.333 0.00 0.00 37.56 3.11
1366 5555 8.921205 GGGTATATCTAAGTCTGTCTTGGTAAA 58.079 37.037 0.00 0.00 37.56 2.01
1368 5557 7.724506 CAGGGTATATCTAAGTCTGTCTTGGTA 59.275 40.741 0.00 0.00 37.56 3.25
1372 5561 8.865090 CAATCAGGGTATATCTAAGTCTGTCTT 58.135 37.037 0.00 0.00 39.89 3.01
1376 5565 9.253832 AGATCAATCAGGGTATATCTAAGTCTG 57.746 37.037 0.00 0.00 0.00 3.51
1410 5840 6.694447 ACCTGCTTAAACGTTTCAGATAGTA 58.306 36.000 23.01 10.57 0.00 1.82
1412 5842 6.588756 TGTACCTGCTTAAACGTTTCAGATAG 59.411 38.462 23.01 18.29 0.00 2.08
1416 5846 5.178623 TGATGTACCTGCTTAAACGTTTCAG 59.821 40.000 18.42 17.14 0.00 3.02
1417 5847 5.057819 TGATGTACCTGCTTAAACGTTTCA 58.942 37.500 18.42 8.74 0.00 2.69
1418 5848 5.600908 TGATGTACCTGCTTAAACGTTTC 57.399 39.130 18.42 3.88 0.00 2.78
1420 5850 4.328983 CGATGATGTACCTGCTTAAACGTT 59.671 41.667 0.00 0.00 0.00 3.99
1421 5851 3.863424 CGATGATGTACCTGCTTAAACGT 59.137 43.478 0.00 0.00 0.00 3.99
1423 5853 6.897259 TTACGATGATGTACCTGCTTAAAC 57.103 37.500 0.00 0.00 0.00 2.01
1426 5856 5.239963 TCGATTACGATGATGTACCTGCTTA 59.760 40.000 0.00 0.00 43.81 3.09
1428 5858 3.568430 TCGATTACGATGATGTACCTGCT 59.432 43.478 0.00 0.00 43.81 4.24
1429 5859 3.897325 TCGATTACGATGATGTACCTGC 58.103 45.455 0.00 0.00 43.81 4.85
1476 5906 4.226761 GGGAAAGCACACTTGATTAAACG 58.773 43.478 0.00 0.00 35.85 3.60
1585 6018 5.947566 TCATCAGCAAGAAATTCCATTCTGA 59.052 36.000 7.09 7.09 39.54 3.27
1597 6030 6.406737 CCTTCTAGAGATGTCATCAGCAAGAA 60.407 42.308 15.20 14.59 31.77 2.52
1602 6035 3.321682 AGCCTTCTAGAGATGTCATCAGC 59.678 47.826 15.20 6.60 0.00 4.26
1610 6043 8.862325 TCTTATAGAAGAGCCTTCTAGAGATG 57.138 38.462 21.51 14.31 36.75 2.90
1671 6110 2.271800 GTCTTCGGATACTTGCACCAG 58.728 52.381 0.00 0.00 0.00 4.00
1765 6213 6.680810 TCATACCACTGATCTTTTGCTTTTG 58.319 36.000 0.00 0.00 0.00 2.44
1805 6253 3.868757 TCTTCTGTAAGTCCATGACCG 57.131 47.619 0.00 0.00 34.13 4.79
1831 6279 7.205515 AGTATCTTTTTCATCTCCTCCACAT 57.794 36.000 0.00 0.00 0.00 3.21
1859 6307 7.821359 TGAGATGGCAGATCATAATAGCTAAAC 59.179 37.037 0.00 0.00 0.00 2.01
1926 6374 8.624776 CAAGTCAACTCTTAAGACCTTGAAATT 58.375 33.333 17.04 13.49 32.82 1.82
1937 6385 7.493971 CACCTCCATATCAAGTCAACTCTTAAG 59.506 40.741 0.00 0.00 0.00 1.85
1938 6386 7.331026 CACCTCCATATCAAGTCAACTCTTAA 58.669 38.462 0.00 0.00 0.00 1.85
1940 6388 5.338708 CCACCTCCATATCAAGTCAACTCTT 60.339 44.000 0.00 0.00 0.00 2.85
1945 6393 5.221722 GCTATCCACCTCCATATCAAGTCAA 60.222 44.000 0.00 0.00 0.00 3.18
1947 6395 4.323104 GGCTATCCACCTCCATATCAAGTC 60.323 50.000 0.00 0.00 0.00 3.01
1948 6396 3.584848 GGCTATCCACCTCCATATCAAGT 59.415 47.826 0.00 0.00 0.00 3.16
1949 6397 3.368843 CGGCTATCCACCTCCATATCAAG 60.369 52.174 0.00 0.00 0.00 3.02
2066 6515 6.294564 CCCTTTCTTCATCATCAATGCCTATG 60.295 42.308 0.00 0.00 35.17 2.23
2105 6554 5.918608 AGATCAAGTACCATGTCATGTACC 58.081 41.667 11.84 0.00 0.00 3.34
2133 6582 3.380479 TTCTTCAGTGGACAAGGTACG 57.620 47.619 0.00 0.00 0.00 3.67
2136 6585 4.236527 AGTTTTCTTCAGTGGACAAGGT 57.763 40.909 0.00 0.00 0.00 3.50
2146 6595 9.443283 CAAGAATAGTGACAAAGTTTTCTTCAG 57.557 33.333 0.00 0.00 37.38 3.02
2168 6617 7.907389 ACACTTTTCTCATAGTACCATCAAGA 58.093 34.615 0.00 0.00 0.00 3.02
2171 6620 7.482169 AGACACTTTTCTCATAGTACCATCA 57.518 36.000 0.00 0.00 0.00 3.07
2182 6631 6.374333 ACTTTGCAAGTTAGACACTTTTCTCA 59.626 34.615 0.00 0.00 43.89 3.27
2183 6632 6.786207 ACTTTGCAAGTTAGACACTTTTCTC 58.214 36.000 0.00 0.00 43.89 2.87
2190 6639 6.373186 AACCTTACTTTGCAAGTTAGACAC 57.627 37.500 13.21 0.00 39.79 3.67
2193 6642 4.212636 GCGAACCTTACTTTGCAAGTTAGA 59.787 41.667 13.21 0.00 39.79 2.10
2200 6649 2.248280 TCTGCGAACCTTACTTTGCA 57.752 45.000 0.00 0.00 38.07 4.08
2201 6650 3.831715 AATCTGCGAACCTTACTTTGC 57.168 42.857 0.00 0.00 0.00 3.68
2202 6651 5.584649 TGGATAATCTGCGAACCTTACTTTG 59.415 40.000 0.00 0.00 0.00 2.77
2206 6655 4.691216 GGATGGATAATCTGCGAACCTTAC 59.309 45.833 0.00 0.00 35.43 2.34
2207 6656 4.346709 TGGATGGATAATCTGCGAACCTTA 59.653 41.667 0.00 0.00 35.43 2.69
2222 6671 4.682778 CATCTTGCCATTTTGGATGGAT 57.317 40.909 9.15 0.00 40.96 3.41
2235 6684 4.762251 GGTGGTAGAAATATCCATCTTGCC 59.238 45.833 0.00 0.00 33.68 4.52
2243 6692 4.973168 TCATGCTGGTGGTAGAAATATCC 58.027 43.478 0.00 0.00 0.00 2.59
2247 6696 4.406456 TGTTTCATGCTGGTGGTAGAAAT 58.594 39.130 0.00 0.00 0.00 2.17
2249 6698 3.500448 TGTTTCATGCTGGTGGTAGAA 57.500 42.857 0.00 0.00 0.00 2.10
2250 6699 3.181445 ACTTGTTTCATGCTGGTGGTAGA 60.181 43.478 0.00 0.00 0.00 2.59
2251 6700 3.058016 CACTTGTTTCATGCTGGTGGTAG 60.058 47.826 0.00 0.00 0.00 3.18
2258 6707 4.936411 AGAGATCTCACTTGTTTCATGCTG 59.064 41.667 24.39 0.00 0.00 4.41
2261 6710 8.545229 AAGTAAGAGATCTCACTTGTTTCATG 57.455 34.615 24.39 0.00 30.28 3.07
2295 6744 8.124823 CAGCTGTACTTTGTCAATTATACCATG 58.875 37.037 5.25 0.00 0.00 3.66
2296 6745 8.046708 TCAGCTGTACTTTGTCAATTATACCAT 58.953 33.333 14.67 0.00 0.00 3.55
2303 6752 8.671921 CAGATATTCAGCTGTACTTTGTCAATT 58.328 33.333 14.67 0.00 33.37 2.32
2308 6757 5.491070 TGCAGATATTCAGCTGTACTTTGT 58.509 37.500 14.67 0.00 40.42 2.83
2309 6758 5.583854 ACTGCAGATATTCAGCTGTACTTTG 59.416 40.000 23.35 7.90 38.76 2.77
2315 6764 5.005740 TCAAAACTGCAGATATTCAGCTGT 58.994 37.500 23.35 0.00 41.33 4.40
2316 6765 5.556355 TCAAAACTGCAGATATTCAGCTG 57.444 39.130 23.35 7.63 41.27 4.24
2373 6825 7.878621 TCTTCATATACCCAGGATCTGAAAT 57.121 36.000 0.00 0.00 32.44 2.17
2486 6938 0.885196 GAGCTCGTCTCAAGTCCAGT 59.115 55.000 0.00 0.00 41.51 4.00
2602 7054 1.406205 GCACTTCTAGGGACTTGAGGC 60.406 57.143 0.00 0.00 41.76 4.70
2608 7060 2.239150 TCGTCTAGCACTTCTAGGGACT 59.761 50.000 0.00 0.00 43.93 3.85
2743 7195 6.262273 GGACTCAACCAAAGTTTTATCAGTGA 59.738 38.462 0.00 0.00 32.45 3.41
2927 7379 2.779506 AGTAAAGGAAGCGTTGAAGGG 58.220 47.619 0.00 0.00 0.00 3.95
2987 7439 2.278857 CCGAGGAGCCGAATGTCG 60.279 66.667 0.00 0.00 40.07 4.35
2995 7447 3.056328 GCAACAACCCGAGGAGCC 61.056 66.667 0.00 0.00 0.00 4.70
3033 7485 4.098807 TGAGAATATAGTACTGCGCACCAA 59.901 41.667 5.66 0.00 0.00 3.67
3128 7580 4.830765 GGCACTGCGGCGATACCA 62.831 66.667 12.98 0.00 39.03 3.25
3161 7613 4.462834 AGTTTAACCTTTGGCATAGCTTCC 59.537 41.667 0.00 0.00 0.00 3.46
3163 7615 4.462834 GGAGTTTAACCTTTGGCATAGCTT 59.537 41.667 0.00 0.00 0.00 3.74
3175 7627 3.756117 CCAAAGCAGAGGAGTTTAACCT 58.244 45.455 0.00 0.00 40.80 3.50
3189 7641 4.284550 AGCCGGGAAGCCAAAGCA 62.285 61.111 2.18 0.00 43.56 3.91
3269 7721 1.699083 TCACACAGAAGCCCAATCTGA 59.301 47.619 10.27 0.00 45.74 3.27
3273 7725 3.493176 GCTTTTTCACACAGAAGCCCAAT 60.493 43.478 0.00 0.00 38.78 3.16
3277 7729 2.860136 GTTGCTTTTTCACACAGAAGCC 59.140 45.455 4.69 0.00 42.81 4.35
3337 7789 3.458163 GATGGTCCTCCGTGGCGA 61.458 66.667 0.00 0.00 36.30 5.54
3341 7793 1.078426 GTTGGGATGGTCCTCCGTG 60.078 63.158 0.00 0.00 36.57 4.94
3342 7794 2.656069 CGTTGGGATGGTCCTCCGT 61.656 63.158 0.00 0.00 36.57 4.69
3343 7795 2.186903 CGTTGGGATGGTCCTCCG 59.813 66.667 0.00 0.00 36.57 4.63
3368 7820 5.592688 ACATTACCAACTGCACAAACTAAGT 59.407 36.000 0.00 0.00 0.00 2.24
3373 7825 3.801594 CCAACATTACCAACTGCACAAAC 59.198 43.478 0.00 0.00 0.00 2.93
3379 7831 1.339610 TGTGCCAACATTACCAACTGC 59.660 47.619 0.00 0.00 0.00 4.40
3433 7885 3.787634 CAGAAATGTGAATACGTGCATGC 59.212 43.478 11.82 11.82 0.00 4.06
3441 7893 7.417612 ACTTGTGAACACAGAAATGTGAATAC 58.582 34.615 14.85 9.93 42.94 1.89
3497 8119 4.293634 TCCTCCCCCTGAATTTGATAAACA 59.706 41.667 0.00 0.00 0.00 2.83
3498 8120 4.867086 TCCTCCCCCTGAATTTGATAAAC 58.133 43.478 0.00 0.00 0.00 2.01
3502 8124 2.861317 ACATCCTCCCCCTGAATTTGAT 59.139 45.455 0.00 0.00 0.00 2.57
3508 8130 1.691219 GCAACATCCTCCCCCTGAA 59.309 57.895 0.00 0.00 0.00 3.02
3511 8133 2.204291 TGGCAACATCCTCCCCCT 60.204 61.111 0.00 0.00 46.17 4.79
3523 8145 0.901114 ATCACATGCAGCCTTGGCAA 60.901 50.000 14.54 0.00 45.60 4.52
3582 8218 6.255020 CACCGAATACATAACAGTAGGTGAAC 59.745 42.308 4.95 0.00 46.72 3.18
3639 8280 4.309933 TGATTTGATGAATCGATCCCTCG 58.690 43.478 0.00 0.00 45.85 4.63
3647 8288 7.010460 TGTGCTACTAACTGATTTGATGAATCG 59.990 37.037 0.00 0.00 45.85 3.34
3677 8338 5.464389 GGTTACATAGCGTATAGTTTGGTGG 59.536 44.000 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.