Multiple sequence alignment - TraesCS3D01G473600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G473600 chr3D 100.000 5660 0 0 1 5660 575130871 575125212 0.000000e+00 10453.0
1 TraesCS3D01G473600 chr3D 93.473 429 28 0 1067 1495 614626538 614626966 6.180000e-179 638.0
2 TraesCS3D01G473600 chr3D 89.630 135 11 1 4936 5070 610738644 610738775 9.750000e-38 169.0
3 TraesCS3D01G473600 chr3D 91.736 121 7 2 4948 5068 591203940 591203823 1.260000e-36 165.0
4 TraesCS3D01G473600 chr3D 86.713 143 12 6 4931 5072 140727195 140727331 9.820000e-33 152.0
5 TraesCS3D01G473600 chr3D 81.208 149 18 3 4919 5058 608466086 608466233 1.670000e-20 111.0
6 TraesCS3D01G473600 chr3A 91.603 3025 160 43 1 2963 710273340 710276332 0.000000e+00 4093.0
7 TraesCS3D01G473600 chr3A 94.636 1044 50 6 3191 4233 710276595 710277633 0.000000e+00 1613.0
8 TraesCS3D01G473600 chr3A 93.238 562 35 3 4376 4937 710278005 710278563 0.000000e+00 824.0
9 TraesCS3D01G473600 chr3A 92.829 251 14 3 5067 5316 710278553 710278800 1.500000e-95 361.0
10 TraesCS3D01G473600 chr3A 86.000 150 13 5 1873 2014 108030855 108031004 2.730000e-33 154.0
11 TraesCS3D01G473600 chr3A 95.556 45 2 0 5319 5363 710278862 710278906 7.870000e-09 73.1
12 TraesCS3D01G473600 chr3A 100.000 33 0 0 5233 5265 710278768 710278800 1.700000e-05 62.1
13 TraesCS3D01G473600 chr3B 92.606 2786 144 33 386 3127 764693043 764695810 0.000000e+00 3947.0
14 TraesCS3D01G473600 chr3B 94.265 959 43 9 3199 4154 764695813 764696762 0.000000e+00 1456.0
15 TraesCS3D01G473600 chr3B 91.655 719 49 7 4227 4937 764696845 764697560 0.000000e+00 985.0
16 TraesCS3D01G473600 chr3B 90.030 662 37 13 4287 4937 764738038 764738681 0.000000e+00 830.0
17 TraesCS3D01G473600 chr3B 88.487 304 28 2 5067 5363 764697550 764697853 1.500000e-95 361.0
18 TraesCS3D01G473600 chr3B 88.449 303 29 2 5067 5363 764738671 764738973 1.500000e-95 361.0
19 TraesCS3D01G473600 chr3B 86.517 178 15 5 35 208 764690947 764691119 2.690000e-43 187.0
20 TraesCS3D01G473600 chr3B 79.371 286 41 14 4651 4932 764729155 764729426 9.680000e-43 185.0
21 TraesCS3D01G473600 chr4A 93.711 318 16 3 3840 4154 688787954 688788270 1.850000e-129 473.0
22 TraesCS3D01G473600 chr1D 76.899 632 135 7 1000 1627 408432277 408432901 1.170000e-91 348.0
23 TraesCS3D01G473600 chr1B 77.583 571 125 1 1060 1627 549518394 549518964 5.430000e-90 342.0
24 TraesCS3D01G473600 chrUn 92.050 239 19 0 5125 5363 476132519 476132281 2.530000e-88 337.0
25 TraesCS3D01G473600 chrUn 81.879 149 17 5 4919 5058 43172387 43172534 3.580000e-22 117.0
26 TraesCS3D01G473600 chr1A 77.448 572 124 3 1060 1627 504313411 504313981 2.530000e-88 337.0
27 TraesCS3D01G473600 chr1A 86.000 150 12 6 1873 2014 537060713 537060565 9.820000e-33 152.0
28 TraesCS3D01G473600 chr6D 92.568 148 11 0 5513 5660 452949626 452949773 4.440000e-51 213.0
29 TraesCS3D01G473600 chr6D 93.056 144 10 0 5517 5660 450859079 450859222 1.600000e-50 211.0
30 TraesCS3D01G473600 chr5A 93.103 145 10 0 5516 5660 456897903 456897759 4.440000e-51 213.0
31 TraesCS3D01G473600 chr5A 91.111 135 9 2 4936 5070 87934611 87934480 4.510000e-41 180.0
32 TraesCS3D01G473600 chr4D 93.056 144 10 0 5517 5660 182066920 182067063 1.600000e-50 211.0
33 TraesCS3D01G473600 chr4D 89.655 145 5 3 4935 5070 432432791 432432934 5.830000e-40 176.0
34 TraesCS3D01G473600 chr2D 93.056 144 10 0 5517 5660 475088502 475088359 1.600000e-50 211.0
35 TraesCS3D01G473600 chr2D 92.517 147 9 1 5514 5660 576955383 576955527 5.750000e-50 209.0
36 TraesCS3D01G473600 chr5B 92.466 146 11 0 5515 5660 6612854 6612709 5.750000e-50 209.0
37 TraesCS3D01G473600 chr4B 92.517 147 10 1 5514 5660 453769159 453769304 5.750000e-50 209.0
38 TraesCS3D01G473600 chr4B 91.447 152 11 1 5511 5660 324350965 324351116 2.070000e-49 207.0
39 TraesCS3D01G473600 chr5D 90.909 121 8 2 4948 5068 474212314 474212431 5.870000e-35 159.0
40 TraesCS3D01G473600 chr5D 89.683 126 9 3 4951 5076 504629232 504629111 2.110000e-34 158.0
41 TraesCS3D01G473600 chr5D 89.683 126 9 3 4951 5076 504675070 504674949 2.110000e-34 158.0
42 TraesCS3D01G473600 chr5D 86.713 143 16 3 1873 2014 353964449 353964309 7.590000e-34 156.0
43 TraesCS3D01G473600 chr5D 86.111 144 18 2 1873 2014 505892766 505892909 2.730000e-33 154.0
44 TraesCS3D01G473600 chr5D 85.714 147 20 1 4927 5073 547815050 547815195 2.730000e-33 154.0
45 TraesCS3D01G473600 chr7D 83.133 166 18 5 4920 5076 621735193 621735029 5.910000e-30 143.0
46 TraesCS3D01G473600 chr7B 83.439 157 11 5 1873 2014 51620009 51619853 1.280000e-26 132.0
47 TraesCS3D01G473600 chr6B 82.803 157 11 8 1873 2014 659623931 659623776 5.950000e-25 126.0
48 TraesCS3D01G473600 chr6B 92.647 68 5 0 5005 5072 697606258 697606191 1.300000e-16 99.0
49 TraesCS3D01G473600 chr2A 95.349 43 2 0 4926 4968 95211780 95211738 1.020000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G473600 chr3D 575125212 575130871 5659 True 10453.000000 10453 100.000000 1 5660 1 chr3D.!!$R1 5659
1 TraesCS3D01G473600 chr3A 710273340 710278906 5566 False 1171.033333 4093 94.643667 1 5363 6 chr3A.!!$F2 5362
2 TraesCS3D01G473600 chr3B 764690947 764697853 6906 False 1387.200000 3947 90.706000 35 5363 5 chr3B.!!$F2 5328
3 TraesCS3D01G473600 chr3B 764738038 764738973 935 False 595.500000 830 89.239500 4287 5363 2 chr3B.!!$F3 1076
4 TraesCS3D01G473600 chr1D 408432277 408432901 624 False 348.000000 348 76.899000 1000 1627 1 chr1D.!!$F1 627
5 TraesCS3D01G473600 chr1B 549518394 549518964 570 False 342.000000 342 77.583000 1060 1627 1 chr1B.!!$F1 567
6 TraesCS3D01G473600 chr1A 504313411 504313981 570 False 337.000000 337 77.448000 1060 1627 1 chr1A.!!$F1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
248 254 0.250989 CCAGCCGAAACACCCCTAAA 60.251 55.0 0.0 0.0 0.00 1.85 F
969 2741 0.598065 ACGCACCTTTCAGCCATTTC 59.402 50.0 0.0 0.0 0.00 2.17 F
2786 4609 0.321996 AGTGGAGGAAAACTCTCGCC 59.678 55.0 0.0 0.0 45.83 5.54 F
4187 6116 0.681243 AAATTCTGCCCCTTCTCGCC 60.681 55.0 0.0 0.0 0.00 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1386 3171 0.584396 GCGTGTCGACCATGTTCAAA 59.416 50.0 14.12 0.0 32.3 2.69 R
2924 4747 1.568504 TGTCCCTATTTCGGTGAGCT 58.431 50.0 0.00 0.0 0.0 4.09 R
4193 6122 0.107654 ACTAGAAGCGGCAATGGACC 60.108 55.0 1.45 0.0 0.0 4.46 R
5398 7634 0.037326 AGAAAATCTGCGCTCGTGGA 60.037 50.0 9.73 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 73 4.580995 TGATTCGAAGTCTAGATGTCCCTC 59.419 45.833 3.35 0.00 0.00 4.30
126 131 1.182385 TCCCGGCCCAAACAATGTTC 61.182 55.000 0.00 0.00 0.00 3.18
131 136 3.202097 CGGCCCAAACAATGTTCTTTTT 58.798 40.909 0.00 0.00 0.00 1.94
140 145 7.346695 CAAACAATGTTCTTTTTACTGCCATG 58.653 34.615 0.00 0.00 0.00 3.66
184 189 2.575532 TGTTGAGAAAGTGAAGCCCAG 58.424 47.619 0.00 0.00 0.00 4.45
185 190 2.172505 TGTTGAGAAAGTGAAGCCCAGA 59.827 45.455 0.00 0.00 0.00 3.86
186 191 2.550180 GTTGAGAAAGTGAAGCCCAGAC 59.450 50.000 0.00 0.00 0.00 3.51
187 192 2.050144 TGAGAAAGTGAAGCCCAGACT 58.950 47.619 0.00 0.00 0.00 3.24
214 220 3.756933 ATGCACTTTTGGACTGCAAAT 57.243 38.095 0.00 0.00 43.85 2.32
219 225 2.036346 ACTTTTGGACTGCAAATCAGCC 59.964 45.455 0.00 0.00 46.76 4.85
224 230 1.340991 GGACTGCAAATCAGCCCCTTA 60.341 52.381 0.00 0.00 46.76 2.69
225 231 2.446435 GACTGCAAATCAGCCCCTTAA 58.554 47.619 0.00 0.00 46.76 1.85
226 232 2.164422 GACTGCAAATCAGCCCCTTAAC 59.836 50.000 0.00 0.00 46.76 2.01
227 233 2.170166 CTGCAAATCAGCCCCTTAACA 58.830 47.619 0.00 0.00 35.78 2.41
228 234 1.892474 TGCAAATCAGCCCCTTAACAC 59.108 47.619 0.00 0.00 0.00 3.32
230 236 1.824852 CAAATCAGCCCCTTAACACCC 59.175 52.381 0.00 0.00 0.00 4.61
231 237 1.080638 AATCAGCCCCTTAACACCCA 58.919 50.000 0.00 0.00 0.00 4.51
232 238 0.625849 ATCAGCCCCTTAACACCCAG 59.374 55.000 0.00 0.00 0.00 4.45
233 239 1.678970 CAGCCCCTTAACACCCAGC 60.679 63.158 0.00 0.00 0.00 4.85
234 240 2.362503 GCCCCTTAACACCCAGCC 60.363 66.667 0.00 0.00 0.00 4.85
235 241 2.045340 CCCCTTAACACCCAGCCG 60.045 66.667 0.00 0.00 0.00 5.52
240 246 1.600023 CTTAACACCCAGCCGAAACA 58.400 50.000 0.00 0.00 0.00 2.83
241 247 1.265905 CTTAACACCCAGCCGAAACAC 59.734 52.381 0.00 0.00 0.00 3.32
244 250 4.280019 ACCCAGCCGAAACACCCC 62.280 66.667 0.00 0.00 0.00 4.95
245 251 3.966543 CCCAGCCGAAACACCCCT 61.967 66.667 0.00 0.00 0.00 4.79
246 252 2.598787 CCCAGCCGAAACACCCCTA 61.599 63.158 0.00 0.00 0.00 3.53
247 253 1.377229 CCAGCCGAAACACCCCTAA 59.623 57.895 0.00 0.00 0.00 2.69
248 254 0.250989 CCAGCCGAAACACCCCTAAA 60.251 55.000 0.00 0.00 0.00 1.85
249 255 1.611519 CAGCCGAAACACCCCTAAAA 58.388 50.000 0.00 0.00 0.00 1.52
297 2037 0.824109 GGTATTTTTGGGCCAGGCTC 59.176 55.000 12.43 8.27 0.00 4.70
585 2349 2.966732 GCTTCCGTCCATCCACCCA 61.967 63.158 0.00 0.00 0.00 4.51
621 2385 3.304829 TCATCACTTATCCATCCGTCCA 58.695 45.455 0.00 0.00 0.00 4.02
701 2465 2.997315 CGAGCTGGAGGTGGGTGA 60.997 66.667 0.00 0.00 0.00 4.02
702 2466 2.985456 GAGCTGGAGGTGGGTGAG 59.015 66.667 0.00 0.00 0.00 3.51
703 2467 3.322318 GAGCTGGAGGTGGGTGAGC 62.322 68.421 0.00 0.00 0.00 4.26
704 2468 3.640407 GCTGGAGGTGGGTGAGCA 61.640 66.667 0.00 0.00 0.00 4.26
784 2556 2.591715 GGTGCAGTGCTCCAACGT 60.592 61.111 27.29 0.00 41.27 3.99
827 2599 1.971357 CCTTCTGTGAGTGTAGGTGGT 59.029 52.381 0.00 0.00 0.00 4.16
835 2607 2.225420 TGAGTGTAGGTGGTGGTGGATA 60.225 50.000 0.00 0.00 0.00 2.59
871 2643 2.283966 CTCGGGGGACTGGAGTGT 60.284 66.667 0.00 0.00 37.31 3.55
878 2650 1.278413 GGGGACTGGAGTGTTTAGGTC 59.722 57.143 0.00 0.00 0.00 3.85
895 2667 2.204461 TCCGAGGTTGGTGAGCGAA 61.204 57.895 0.00 0.00 0.00 4.70
952 2724 4.662961 TGCCGACCAGAGCACACG 62.663 66.667 0.00 0.00 33.08 4.49
963 2735 2.050985 GCACACGCACCTTTCAGC 60.051 61.111 0.00 0.00 38.36 4.26
965 2737 2.186160 CACACGCACCTTTCAGCCA 61.186 57.895 0.00 0.00 0.00 4.75
969 2741 0.598065 ACGCACCTTTCAGCCATTTC 59.402 50.000 0.00 0.00 0.00 2.17
972 2744 1.888512 GCACCTTTCAGCCATTTCTGA 59.111 47.619 0.00 0.00 40.99 3.27
974 2746 3.428589 GCACCTTTCAGCCATTTCTGATC 60.429 47.826 0.00 0.00 42.12 2.92
975 2747 4.015084 CACCTTTCAGCCATTTCTGATCT 58.985 43.478 0.00 0.00 42.12 2.75
976 2748 4.015084 ACCTTTCAGCCATTTCTGATCTG 58.985 43.478 0.00 0.00 42.12 2.90
978 2750 2.048444 TCAGCCATTTCTGATCTGCC 57.952 50.000 0.00 0.00 38.11 4.85
989 2761 1.140852 CTGATCTGCCGGATTGGGTTA 59.859 52.381 5.05 0.00 38.63 2.85
995 2767 1.035385 GCCGGATTGGGTTACAAGGG 61.035 60.000 5.05 0.00 43.48 3.95
996 2768 1.035385 CCGGATTGGGTTACAAGGGC 61.035 60.000 0.00 0.00 43.48 5.19
1005 2784 1.653151 GTTACAAGGGCGAGATGGTC 58.347 55.000 0.00 0.00 0.00 4.02
1167 2949 4.853050 GCCGCTCTGCTGCAGGAT 62.853 66.667 27.79 0.00 38.59 3.24
1273 3058 1.264826 TGTTCGACGTGATCAACTCGA 59.735 47.619 17.77 17.77 36.97 4.04
1293 3078 4.057428 GAGGACGTGCTGAGGCGT 62.057 66.667 16.62 0.00 44.50 5.68
1362 3147 2.493030 CGGACCTTGTACGCCGAT 59.507 61.111 0.00 0.00 46.29 4.18
1386 3171 2.044793 TCTTGAGGGATGGGTTCTGT 57.955 50.000 0.00 0.00 0.00 3.41
1665 3450 5.463061 GCATGTATCTTGCTTTGTGTTTGTT 59.537 36.000 0.00 0.00 37.14 2.83
1666 3451 6.562640 GCATGTATCTTGCTTTGTGTTTGTTG 60.563 38.462 0.00 0.00 37.14 3.33
1735 3545 3.204526 CATGAGGGAGAGAAAGTGCATC 58.795 50.000 0.00 0.00 0.00 3.91
1747 3557 9.155975 GAGAGAAAGTGCATCAGTTATTTTCTA 57.844 33.333 0.00 0.00 34.58 2.10
1786 3596 5.222007 ACTCACTGTTTGATGAGAGGGAAAT 60.222 40.000 8.18 0.00 44.32 2.17
1840 3650 8.443160 TGAGTGAAAGCTTTATGAAAGAATACG 58.557 33.333 12.68 0.00 41.02 3.06
1852 3662 6.408858 TGAAAGAATACGTCTGATCAAAGC 57.591 37.500 0.00 0.00 36.40 3.51
1875 3685 5.163923 GCAAAAACATGCTTAAGGCTTGATC 60.164 40.000 10.69 0.00 45.38 2.92
1883 3693 6.624352 TGCTTAAGGCTTGATCATGTATTC 57.376 37.500 10.69 0.00 42.39 1.75
1943 3753 7.705325 GCAATAATTTCAGCACATGAGATTCTT 59.295 33.333 0.00 0.00 40.79 2.52
2094 3905 2.303175 TGCACCAACCTTCAGTTTACC 58.697 47.619 0.00 0.00 36.18 2.85
2131 3942 5.697633 CCTATTGCATTTGAAGTTTGCTTGT 59.302 36.000 0.00 0.00 37.28 3.16
2270 4092 6.472686 ACTGTACATCTAGGATTTGGAGTC 57.527 41.667 0.00 0.00 0.00 3.36
2340 4162 7.351414 GCGTATGCTATATGTTCTGATTTCA 57.649 36.000 0.00 0.00 38.39 2.69
2391 4214 6.149474 GCACTGTTGGACTCATGTACTTAATT 59.851 38.462 0.00 0.00 0.00 1.40
2396 4219 9.952030 TGTTGGACTCATGTACTTAATTTATGA 57.048 29.630 0.00 0.00 0.00 2.15
2414 4237 3.887621 TGACAGTTAGCATAGTGACCC 57.112 47.619 0.50 0.00 0.00 4.46
2459 4282 9.685276 ACCATTTCTTATACTCAATCACATCAA 57.315 29.630 0.00 0.00 0.00 2.57
2516 4339 4.929211 GCACTATACGCCATGATAATGACA 59.071 41.667 0.00 0.00 0.00 3.58
2590 4413 5.594317 ACCCATCTGGCTCACATAATTAAAC 59.406 40.000 0.00 0.00 37.83 2.01
2702 4525 8.674173 ACTGAGAATATACTCTATCTTGGAGGA 58.326 37.037 0.00 0.00 37.73 3.71
2786 4609 0.321996 AGTGGAGGAAAACTCTCGCC 59.678 55.000 0.00 0.00 45.83 5.54
2910 4733 3.861569 AGCGTCTTTTTGTCTTCTTCG 57.138 42.857 0.00 0.00 0.00 3.79
2918 4741 9.676899 CGTCTTTTTGTCTTCTTCGAATATTAG 57.323 33.333 0.00 0.00 0.00 1.73
2932 4755 7.869016 TCGAATATTAGAATTTAGCTCACCG 57.131 36.000 0.00 0.00 0.00 4.94
2995 4914 3.048337 TGCTTTTACGGTCCTACCTTG 57.952 47.619 0.00 0.00 35.66 3.61
3005 4924 3.684413 CGGTCCTACCTTGTATGGCATTT 60.684 47.826 4.78 0.00 35.66 2.32
3023 4942 7.041107 TGGCATTTAATTATTGAAGAAGGCAC 58.959 34.615 4.85 0.00 0.00 5.01
3086 5005 3.504520 TGATCTGTTGTCGCAGTAGTGTA 59.495 43.478 0.00 0.00 37.70 2.90
3127 5054 1.002468 CACAGGAAGCAACCTCGTTTG 60.002 52.381 0.00 0.00 38.32 2.93
3128 5055 1.308998 CAGGAAGCAACCTCGTTTGT 58.691 50.000 0.00 0.00 38.32 2.83
3129 5056 2.158871 ACAGGAAGCAACCTCGTTTGTA 60.159 45.455 0.00 0.00 38.32 2.41
3130 5057 2.875933 CAGGAAGCAACCTCGTTTGTAA 59.124 45.455 0.00 0.00 38.32 2.41
3132 5059 3.564225 AGGAAGCAACCTCGTTTGTAAAG 59.436 43.478 0.00 0.00 34.98 1.85
3134 5061 4.512571 GGAAGCAACCTCGTTTGTAAAGTA 59.487 41.667 0.00 0.00 0.00 2.24
3135 5062 5.007921 GGAAGCAACCTCGTTTGTAAAGTAA 59.992 40.000 0.00 0.00 0.00 2.24
3136 5063 6.439675 AAGCAACCTCGTTTGTAAAGTAAA 57.560 33.333 0.00 0.00 0.00 2.01
3137 5064 6.439675 AGCAACCTCGTTTGTAAAGTAAAA 57.560 33.333 0.00 0.00 0.00 1.52
3138 5065 6.854778 AGCAACCTCGTTTGTAAAGTAAAAA 58.145 32.000 0.00 0.00 0.00 1.94
3173 5100 9.850198 TGATCATTAAATCACAGGATATTCACA 57.150 29.630 0.00 0.00 32.09 3.58
3176 5103 9.904198 TCATTAAATCACAGGATATTCACAAGA 57.096 29.630 0.00 0.00 32.09 3.02
3179 5106 7.636150 AAATCACAGGATATTCACAAGAAGG 57.364 36.000 0.00 0.00 32.57 3.46
3180 5107 5.102953 TCACAGGATATTCACAAGAAGGG 57.897 43.478 0.00 0.00 37.14 3.95
3181 5108 4.782691 TCACAGGATATTCACAAGAAGGGA 59.217 41.667 0.00 0.00 37.14 4.20
3182 5109 5.429762 TCACAGGATATTCACAAGAAGGGAT 59.570 40.000 0.00 0.00 37.14 3.85
3183 5110 6.615316 TCACAGGATATTCACAAGAAGGGATA 59.385 38.462 0.00 0.00 37.14 2.59
3184 5111 7.293299 TCACAGGATATTCACAAGAAGGGATAT 59.707 37.037 0.00 0.00 37.14 1.63
3185 5112 8.597167 CACAGGATATTCACAAGAAGGGATATA 58.403 37.037 0.00 0.00 37.14 0.86
3186 5113 9.343994 ACAGGATATTCACAAGAAGGGATATAT 57.656 33.333 0.00 0.00 37.14 0.86
3309 5236 6.405953 CGCTATTATTCTAGGATACCCACTGG 60.406 46.154 0.00 0.00 37.80 4.00
3393 5321 7.657761 AGGTATTTGCTACTATGTGCTATGTTC 59.342 37.037 0.00 0.00 0.00 3.18
3415 5343 2.075338 CAGCTCAAGCAGAACCTTCTC 58.925 52.381 4.59 0.00 45.16 2.87
3499 5427 4.343581 GCTCACTGCACGTCAGAA 57.656 55.556 17.99 7.79 45.72 3.02
3547 5475 1.268079 GAACAGCCAGAGAAACTTGCC 59.732 52.381 0.00 0.00 37.91 4.52
3680 5608 3.291584 GGAAAGGGGATGATTCAGGTTC 58.708 50.000 0.00 0.00 0.00 3.62
3906 5835 5.739959 TGGCATGCACTAACTGAGTATAAA 58.260 37.500 21.36 0.00 35.64 1.40
3949 5878 1.135689 GGTATTTCTGCTGTTGGTGCG 60.136 52.381 0.00 0.00 0.00 5.34
4116 6045 2.818432 GCATATGGCTTGCTCTGCTTAT 59.182 45.455 4.56 0.00 40.25 1.73
4119 6048 3.795623 ATGGCTTGCTCTGCTTATTTG 57.204 42.857 0.00 0.00 0.00 2.32
4120 6049 2.794103 TGGCTTGCTCTGCTTATTTGA 58.206 42.857 0.00 0.00 0.00 2.69
4167 6096 4.504858 CTTGAGGAGCATAGTTAAACCGT 58.495 43.478 0.00 0.00 0.00 4.83
4173 6102 7.279313 TGAGGAGCATAGTTAAACCGTAAATTC 59.721 37.037 0.00 0.00 0.00 2.17
4184 6113 2.289565 CCGTAAATTCTGCCCCTTCTC 58.710 52.381 0.00 0.00 0.00 2.87
4187 6116 0.681243 AAATTCTGCCCCTTCTCGCC 60.681 55.000 0.00 0.00 0.00 5.54
4192 6121 3.394836 GCCCCTTCTCGCCTGTCT 61.395 66.667 0.00 0.00 0.00 3.41
4193 6122 2.581354 CCCCTTCTCGCCTGTCTG 59.419 66.667 0.00 0.00 0.00 3.51
4194 6123 2.581354 CCCTTCTCGCCTGTCTGG 59.419 66.667 0.00 0.00 39.35 3.86
4213 6142 1.291132 GTCCATTGCCGCTTCTAGTC 58.709 55.000 0.00 0.00 0.00 2.59
4246 6227 3.195825 AGCATAACTCAGTGTAGGTCCAC 59.804 47.826 0.00 0.00 35.53 4.02
4255 6236 4.020573 TCAGTGTAGGTCCACCAGTTTATG 60.021 45.833 0.00 0.00 38.89 1.90
4265 6246 3.812053 CCACCAGTTTATGAGCATAGAGC 59.188 47.826 0.00 0.00 46.19 4.09
4354 6336 2.627699 TGCTTTTCCCTTTGCTTACAGG 59.372 45.455 0.00 0.00 0.00 4.00
4372 6354 8.889717 GCTTACAGGCAAATATACTCTGTTTTA 58.110 33.333 0.00 0.00 39.16 1.52
4435 6595 5.432645 TCAAACCATCACACTGAACAGTAA 58.567 37.500 7.15 0.00 40.20 2.24
4457 6617 4.978099 ACAAGACAAGATCAACCATCAGT 58.022 39.130 0.00 0.00 33.29 3.41
4460 6620 6.016777 ACAAGACAAGATCAACCATCAGTTTC 60.017 38.462 0.00 0.00 36.18 2.78
4462 6622 7.009179 AGACAAGATCAACCATCAGTTTCTA 57.991 36.000 0.00 0.00 36.18 2.10
4519 6679 5.185249 AGGATTCTGTCTTACGCAACTCTTA 59.815 40.000 0.00 0.00 0.00 2.10
4521 6681 7.068348 AGGATTCTGTCTTACGCAACTCTTATA 59.932 37.037 0.00 0.00 0.00 0.98
4593 6753 0.395312 ACGAAACCATGAACGACCCT 59.605 50.000 0.00 0.00 0.00 4.34
4779 6944 2.335712 CCGGGTTTCTGCTGGCTTC 61.336 63.158 0.00 0.00 0.00 3.86
4827 6997 2.027007 CCATAGTTTGTGGGGGTCGTTA 60.027 50.000 0.00 0.00 32.98 3.18
4853 7023 7.177568 AGACTGTCATGTTGTACAAGAGAGTAT 59.822 37.037 19.62 15.96 45.97 2.12
4863 7033 6.786207 TGTACAAGAGAGTATTGATCGAGTG 58.214 40.000 0.00 0.00 0.00 3.51
4904 7074 4.634004 TGGACAATAAACATGAGGCGTAAG 59.366 41.667 0.00 0.00 43.44 2.34
4905 7075 4.035208 GGACAATAAACATGAGGCGTAAGG 59.965 45.833 0.00 0.00 38.28 2.69
4935 7105 7.890763 CACAGGTTATTTGTGTGTGTTTTAAC 58.109 34.615 0.00 0.00 40.73 2.01
4936 7106 7.009723 CACAGGTTATTTGTGTGTGTTTTAACC 59.990 37.037 0.00 0.00 40.73 2.85
4937 7107 7.036220 CAGGTTATTTGTGTGTGTTTTAACCA 58.964 34.615 10.55 0.00 39.55 3.67
4938 7108 7.708752 CAGGTTATTTGTGTGTGTTTTAACCAT 59.291 33.333 10.55 0.00 39.55 3.55
4939 7109 8.915036 AGGTTATTTGTGTGTGTTTTAACCATA 58.085 29.630 10.55 0.00 39.55 2.74
4940 7110 9.187455 GGTTATTTGTGTGTGTTTTAACCATAG 57.813 33.333 0.00 0.00 37.88 2.23
4941 7111 9.738832 GTTATTTGTGTGTGTTTTAACCATAGT 57.261 29.630 0.00 0.00 0.00 2.12
4944 7114 9.660180 ATTTGTGTGTGTTTTAACCATAGTTTT 57.340 25.926 0.00 0.00 37.42 2.43
4953 7123 9.843334 TGTTTTAACCATAGTTTTAAATAGCCG 57.157 29.630 0.00 0.00 37.42 5.52
4954 7124 9.292846 GTTTTAACCATAGTTTTAAATAGCCGG 57.707 33.333 0.00 0.00 37.42 6.13
4955 7125 5.509716 AACCATAGTTTTAAATAGCCGGC 57.490 39.130 21.89 21.89 29.61 6.13
4956 7126 4.788679 ACCATAGTTTTAAATAGCCGGCT 58.211 39.130 34.85 34.85 0.00 5.52
4957 7127 5.932455 ACCATAGTTTTAAATAGCCGGCTA 58.068 37.500 36.88 36.88 0.00 3.93
4958 7128 6.540083 ACCATAGTTTTAAATAGCCGGCTAT 58.460 36.000 37.79 37.79 40.63 2.97
4959 7129 7.682628 ACCATAGTTTTAAATAGCCGGCTATA 58.317 34.615 41.53 28.18 38.20 1.31
4960 7130 7.822822 ACCATAGTTTTAAATAGCCGGCTATAG 59.177 37.037 41.53 18.70 38.20 1.31
4961 7131 7.201617 CCATAGTTTTAAATAGCCGGCTATAGC 60.202 40.741 41.53 29.09 38.20 2.97
4962 7132 5.866207 AGTTTTAAATAGCCGGCTATAGCT 58.134 37.500 41.53 30.55 43.20 3.32
4963 7133 5.932883 AGTTTTAAATAGCCGGCTATAGCTC 59.067 40.000 41.53 28.58 40.56 4.09
4964 7134 4.467198 TTAAATAGCCGGCTATAGCTCC 57.533 45.455 41.53 12.16 40.56 4.70
4965 7135 0.818296 AATAGCCGGCTATAGCTCCG 59.182 55.000 41.53 18.50 44.89 4.63
4966 7136 1.668101 ATAGCCGGCTATAGCTCCGC 61.668 60.000 41.03 20.23 44.01 5.54
4967 7137 2.766306 TAGCCGGCTATAGCTCCGCT 62.766 60.000 32.24 25.87 44.01 5.52
4968 7138 3.052081 CCGGCTATAGCTCCGCTT 58.948 61.111 23.53 0.00 44.01 4.68
4969 7139 1.367840 CCGGCTATAGCTCCGCTTT 59.632 57.895 23.53 0.00 44.01 3.51
4970 7140 0.667792 CCGGCTATAGCTCCGCTTTC 60.668 60.000 23.53 4.14 44.01 2.62
4971 7141 0.032130 CGGCTATAGCTCCGCTTTCA 59.968 55.000 23.53 0.00 40.44 2.69
4972 7142 1.789506 GGCTATAGCTCCGCTTTCAG 58.210 55.000 23.53 0.00 40.44 3.02
4973 7143 1.144136 GCTATAGCTCCGCTTTCAGC 58.856 55.000 17.75 0.00 40.44 4.26
4974 7144 1.539065 GCTATAGCTCCGCTTTCAGCA 60.539 52.381 17.75 0.00 40.44 4.41
4975 7145 2.402305 CTATAGCTCCGCTTTCAGCAG 58.598 52.381 0.00 0.00 42.58 4.24
4976 7146 0.179062 ATAGCTCCGCTTTCAGCAGG 60.179 55.000 0.00 0.00 42.58 4.85
4977 7147 2.244117 TAGCTCCGCTTTCAGCAGGG 62.244 60.000 0.00 0.00 42.58 4.45
4978 7148 2.348998 CTCCGCTTTCAGCAGGGT 59.651 61.111 0.00 0.00 42.58 4.34
4979 7149 2.032528 TCCGCTTTCAGCAGGGTG 59.967 61.111 0.00 0.00 42.58 4.61
4980 7150 3.741476 CCGCTTTCAGCAGGGTGC 61.741 66.667 0.00 0.00 42.58 5.01
4981 7151 3.741476 CGCTTTCAGCAGGGTGCC 61.741 66.667 0.00 0.00 46.52 5.01
4982 7152 3.741476 GCTTTCAGCAGGGTGCCG 61.741 66.667 0.00 0.00 46.52 5.69
4983 7153 3.741476 CTTTCAGCAGGGTGCCGC 61.741 66.667 0.00 0.00 46.52 6.53
4984 7154 4.269523 TTTCAGCAGGGTGCCGCT 62.270 61.111 0.00 0.00 46.52 5.52
4985 7155 2.803155 CTTTCAGCAGGGTGCCGCTA 62.803 60.000 0.00 0.00 46.52 4.26
4986 7156 2.404566 TTTCAGCAGGGTGCCGCTAA 62.405 55.000 0.00 0.00 46.52 3.09
4987 7157 2.359850 CAGCAGGGTGCCGCTAAA 60.360 61.111 0.00 0.00 46.52 1.85
4988 7158 1.750399 CAGCAGGGTGCCGCTAAAT 60.750 57.895 0.00 0.00 46.52 1.40
4989 7159 1.750399 AGCAGGGTGCCGCTAAATG 60.750 57.895 0.00 0.00 46.52 2.32
4990 7160 2.774799 GCAGGGTGCCGCTAAATGG 61.775 63.158 0.00 0.00 37.42 3.16
4991 7161 1.378514 CAGGGTGCCGCTAAATGGT 60.379 57.895 0.00 0.00 0.00 3.55
4992 7162 0.965363 CAGGGTGCCGCTAAATGGTT 60.965 55.000 0.00 0.00 0.00 3.67
4993 7163 0.965363 AGGGTGCCGCTAAATGGTTG 60.965 55.000 0.00 0.00 0.00 3.77
4994 7164 1.153842 GGTGCCGCTAAATGGTTGC 60.154 57.895 0.00 0.00 0.00 4.17
4995 7165 1.595093 GGTGCCGCTAAATGGTTGCT 61.595 55.000 0.00 0.00 0.00 3.91
4996 7166 1.091537 GTGCCGCTAAATGGTTGCTA 58.908 50.000 0.00 0.00 0.00 3.49
4997 7167 1.676006 GTGCCGCTAAATGGTTGCTAT 59.324 47.619 0.00 0.00 0.00 2.97
4998 7168 1.946768 TGCCGCTAAATGGTTGCTATC 59.053 47.619 0.00 0.00 0.00 2.08
4999 7169 1.946768 GCCGCTAAATGGTTGCTATCA 59.053 47.619 0.00 0.00 0.00 2.15
5000 7170 2.287009 GCCGCTAAATGGTTGCTATCAC 60.287 50.000 0.00 0.00 0.00 3.06
5001 7171 2.942376 CCGCTAAATGGTTGCTATCACA 59.058 45.455 0.00 0.00 0.00 3.58
5002 7172 3.376859 CCGCTAAATGGTTGCTATCACAA 59.623 43.478 0.00 0.00 0.00 3.33
5003 7173 4.142491 CCGCTAAATGGTTGCTATCACAAA 60.142 41.667 0.00 0.00 0.00 2.83
5004 7174 5.450412 CCGCTAAATGGTTGCTATCACAAAT 60.450 40.000 0.00 0.00 0.00 2.32
5005 7175 6.238621 CCGCTAAATGGTTGCTATCACAAATA 60.239 38.462 0.00 0.00 0.00 1.40
5006 7176 6.852853 CGCTAAATGGTTGCTATCACAAATAG 59.147 38.462 0.00 0.00 0.00 1.73
5007 7177 6.638468 GCTAAATGGTTGCTATCACAAATAGC 59.362 38.462 9.56 9.56 45.28 2.97
5008 7178 5.520376 AATGGTTGCTATCACAAATAGCC 57.480 39.130 13.01 1.04 44.66 3.93
5009 7179 3.287222 TGGTTGCTATCACAAATAGCCC 58.713 45.455 13.01 9.12 44.66 5.19
5010 7180 2.290641 GGTTGCTATCACAAATAGCCCG 59.709 50.000 13.01 0.00 44.66 6.13
5011 7181 1.593196 TGCTATCACAAATAGCCCGC 58.407 50.000 13.01 0.00 44.66 6.13
5012 7182 1.140852 TGCTATCACAAATAGCCCGCT 59.859 47.619 13.01 0.00 44.66 5.52
5013 7183 2.367241 TGCTATCACAAATAGCCCGCTA 59.633 45.455 13.01 0.00 44.66 4.26
5014 7184 3.007940 TGCTATCACAAATAGCCCGCTAT 59.992 43.478 13.01 3.31 44.66 2.97
5015 7185 4.221924 TGCTATCACAAATAGCCCGCTATA 59.778 41.667 9.56 0.00 44.66 1.31
5016 7186 4.806247 GCTATCACAAATAGCCCGCTATAG 59.194 45.833 9.56 8.22 40.69 1.31
5017 7187 3.040147 TCACAAATAGCCCGCTATAGC 57.960 47.619 15.09 15.09 38.20 2.97
5018 7188 2.632996 TCACAAATAGCCCGCTATAGCT 59.367 45.455 21.98 6.31 43.20 3.32
5019 7189 2.738846 CACAAATAGCCCGCTATAGCTG 59.261 50.000 21.98 15.59 40.28 4.24
5020 7190 2.632996 ACAAATAGCCCGCTATAGCTGA 59.367 45.455 21.98 0.99 40.28 4.26
5021 7191 3.261897 ACAAATAGCCCGCTATAGCTGAT 59.738 43.478 21.98 13.94 40.28 2.90
5022 7192 4.256920 CAAATAGCCCGCTATAGCTGATT 58.743 43.478 21.98 9.01 40.28 2.57
5023 7193 4.559862 AATAGCCCGCTATAGCTGATTT 57.440 40.909 21.98 5.05 40.28 2.17
5024 7194 2.175878 AGCCCGCTATAGCTGATTTG 57.824 50.000 21.98 5.68 38.11 2.32
5025 7195 1.160137 GCCCGCTATAGCTGATTTGG 58.840 55.000 21.98 14.00 39.32 3.28
5026 7196 1.270839 GCCCGCTATAGCTGATTTGGA 60.271 52.381 21.98 0.00 39.32 3.53
5027 7197 2.693069 CCCGCTATAGCTGATTTGGAG 58.307 52.381 21.98 3.56 39.32 3.86
5028 7198 2.300152 CCCGCTATAGCTGATTTGGAGA 59.700 50.000 21.98 0.00 39.32 3.71
5029 7199 3.321497 CCGCTATAGCTGATTTGGAGAC 58.679 50.000 21.98 0.00 39.32 3.36
5030 7200 3.321497 CGCTATAGCTGATTTGGAGACC 58.679 50.000 21.98 0.00 39.32 3.85
5031 7201 3.669536 GCTATAGCTGATTTGGAGACCC 58.330 50.000 17.75 0.00 38.21 4.46
5032 7202 2.918712 ATAGCTGATTTGGAGACCCG 57.081 50.000 0.00 0.00 34.29 5.28
5033 7203 0.178068 TAGCTGATTTGGAGACCCGC 59.822 55.000 0.00 0.00 34.29 6.13
5034 7204 2.115291 GCTGATTTGGAGACCCGCC 61.115 63.158 0.00 0.00 34.29 6.13
5035 7205 1.815421 CTGATTTGGAGACCCGCCG 60.815 63.158 0.00 0.00 34.29 6.46
5036 7206 3.202706 GATTTGGAGACCCGCCGC 61.203 66.667 0.00 0.00 34.29 6.53
5037 7207 3.682292 GATTTGGAGACCCGCCGCT 62.682 63.158 0.00 0.00 34.29 5.52
5038 7208 2.306255 GATTTGGAGACCCGCCGCTA 62.306 60.000 0.00 0.00 34.29 4.26
5039 7209 1.696097 ATTTGGAGACCCGCCGCTAT 61.696 55.000 0.00 0.00 34.29 2.97
5040 7210 1.906105 TTTGGAGACCCGCCGCTATT 61.906 55.000 0.00 0.00 34.29 1.73
5041 7211 1.906105 TTGGAGACCCGCCGCTATTT 61.906 55.000 0.00 0.00 34.29 1.40
5042 7212 1.153229 GGAGACCCGCCGCTATTTT 60.153 57.895 0.00 0.00 0.00 1.82
5043 7213 1.158484 GGAGACCCGCCGCTATTTTC 61.158 60.000 0.00 0.00 0.00 2.29
5044 7214 1.153229 AGACCCGCCGCTATTTTCC 60.153 57.895 0.00 0.00 0.00 3.13
5045 7215 1.450669 GACCCGCCGCTATTTTCCA 60.451 57.895 0.00 0.00 0.00 3.53
5046 7216 0.818040 GACCCGCCGCTATTTTCCAT 60.818 55.000 0.00 0.00 0.00 3.41
5047 7217 0.470766 ACCCGCCGCTATTTTCCATA 59.529 50.000 0.00 0.00 0.00 2.74
5048 7218 1.156736 CCCGCCGCTATTTTCCATAG 58.843 55.000 0.00 0.00 0.00 2.23
5049 7219 0.517316 CCGCCGCTATTTTCCATAGC 59.483 55.000 4.08 4.08 42.53 2.97
5050 7220 1.225855 CGCCGCTATTTTCCATAGCA 58.774 50.000 13.00 0.00 45.32 3.49
5051 7221 1.069906 CGCCGCTATTTTCCATAGCAC 60.070 52.381 13.00 4.77 45.32 4.40
5052 7222 1.069906 GCCGCTATTTTCCATAGCACG 60.070 52.381 13.00 4.68 45.32 5.34
5053 7223 1.069906 CCGCTATTTTCCATAGCACGC 60.070 52.381 13.00 0.00 45.32 5.34
5054 7224 1.867233 CGCTATTTTCCATAGCACGCT 59.133 47.619 13.00 0.00 45.32 5.07
5055 7225 3.057019 CGCTATTTTCCATAGCACGCTA 58.943 45.455 13.00 0.39 45.32 4.26
5056 7226 3.679980 CGCTATTTTCCATAGCACGCTAT 59.320 43.478 13.00 5.72 45.32 2.97
5057 7227 4.152402 CGCTATTTTCCATAGCACGCTATT 59.848 41.667 8.84 0.00 45.32 1.73
5058 7228 5.334105 CGCTATTTTCCATAGCACGCTATTT 60.334 40.000 8.84 0.00 45.32 1.40
5059 7229 6.128661 CGCTATTTTCCATAGCACGCTATTTA 60.129 38.462 8.84 0.00 45.32 1.40
5060 7230 7.570507 CGCTATTTTCCATAGCACGCTATTTAA 60.571 37.037 8.84 4.18 45.32 1.52
5061 7231 8.073768 GCTATTTTCCATAGCACGCTATTTAAA 58.926 33.333 8.84 9.40 44.64 1.52
5062 7232 9.944663 CTATTTTCCATAGCACGCTATTTAAAA 57.055 29.630 20.07 20.07 37.16 1.52
5063 7233 8.628882 ATTTTCCATAGCACGCTATTTAAAAC 57.371 30.769 20.13 0.00 37.16 2.43
5064 7234 6.745159 TTCCATAGCACGCTATTTAAAACA 57.255 33.333 8.84 0.00 37.16 2.83
5065 7235 6.935741 TCCATAGCACGCTATTTAAAACAT 57.064 33.333 8.84 0.00 37.16 2.71
5066 7236 7.328277 TCCATAGCACGCTATTTAAAACATT 57.672 32.000 8.84 0.00 37.16 2.71
5067 7237 7.192913 TCCATAGCACGCTATTTAAAACATTG 58.807 34.615 8.84 0.00 37.16 2.82
5068 7238 6.417635 CCATAGCACGCTATTTAAAACATTGG 59.582 38.462 8.84 1.78 37.16 3.16
5094 7265 8.817100 GTTTTAACCCATGCTGCTAAATATTTC 58.183 33.333 3.39 0.00 0.00 2.17
5119 7290 4.263139 TCGACGAAATGAGATGCAAATG 57.737 40.909 0.00 0.00 0.00 2.32
5140 7317 0.681887 TAGTGAGATTCGGCGACCCA 60.682 55.000 10.16 2.02 0.00 4.51
5317 7494 5.505324 GCAGGAATTCTAACATGACTGATGC 60.505 44.000 5.23 0.00 35.15 3.91
5364 7600 4.889856 TGCTGCTGCACGTGTCGT 62.890 61.111 18.38 0.00 45.31 4.34
5365 7601 3.640000 GCTGCTGCACGTGTCGTT 61.640 61.111 18.38 0.00 38.32 3.85
5366 7602 2.307309 GCTGCTGCACGTGTCGTTA 61.307 57.895 18.38 0.00 38.32 3.18
5367 7603 1.487231 CTGCTGCACGTGTCGTTAC 59.513 57.895 18.38 0.00 38.32 2.50
5368 7604 0.939577 CTGCTGCACGTGTCGTTACT 60.940 55.000 18.38 0.00 38.32 2.24
5369 7605 0.937699 TGCTGCACGTGTCGTTACTC 60.938 55.000 18.38 0.00 38.32 2.59
5370 7606 0.663568 GCTGCACGTGTCGTTACTCT 60.664 55.000 18.38 0.00 38.32 3.24
5371 7607 1.053048 CTGCACGTGTCGTTACTCTG 58.947 55.000 18.38 0.00 38.32 3.35
5372 7608 0.382873 TGCACGTGTCGTTACTCTGT 59.617 50.000 18.38 0.00 38.32 3.41
5373 7609 1.202325 TGCACGTGTCGTTACTCTGTT 60.202 47.619 18.38 0.00 38.32 3.16
5374 7610 1.856597 GCACGTGTCGTTACTCTGTTT 59.143 47.619 18.38 0.00 38.32 2.83
5375 7611 2.283351 GCACGTGTCGTTACTCTGTTTT 59.717 45.455 18.38 0.00 38.32 2.43
5376 7612 3.486841 GCACGTGTCGTTACTCTGTTTTA 59.513 43.478 18.38 0.00 38.32 1.52
5377 7613 4.149396 GCACGTGTCGTTACTCTGTTTTAT 59.851 41.667 18.38 0.00 38.32 1.40
5378 7614 5.595993 CACGTGTCGTTACTCTGTTTTATG 58.404 41.667 7.58 0.00 38.32 1.90
5379 7615 5.174398 CACGTGTCGTTACTCTGTTTTATGT 59.826 40.000 7.58 0.00 38.32 2.29
5380 7616 5.174398 ACGTGTCGTTACTCTGTTTTATGTG 59.826 40.000 0.00 0.00 36.35 3.21
5381 7617 5.388061 CGTGTCGTTACTCTGTTTTATGTGG 60.388 44.000 0.00 0.00 0.00 4.17
5382 7618 5.464389 GTGTCGTTACTCTGTTTTATGTGGT 59.536 40.000 0.00 0.00 0.00 4.16
5383 7619 6.642131 GTGTCGTTACTCTGTTTTATGTGGTA 59.358 38.462 0.00 0.00 0.00 3.25
5384 7620 7.330208 GTGTCGTTACTCTGTTTTATGTGGTAT 59.670 37.037 0.00 0.00 0.00 2.73
5385 7621 8.522003 TGTCGTTACTCTGTTTTATGTGGTATA 58.478 33.333 0.00 0.00 0.00 1.47
5386 7622 8.801913 GTCGTTACTCTGTTTTATGTGGTATAC 58.198 37.037 0.00 0.00 0.00 1.47
5387 7623 7.697710 TCGTTACTCTGTTTTATGTGGTATACG 59.302 37.037 0.00 0.00 0.00 3.06
5388 7624 7.514125 CGTTACTCTGTTTTATGTGGTATACGC 60.514 40.741 0.00 0.00 0.00 4.42
5389 7625 5.974108 ACTCTGTTTTATGTGGTATACGCT 58.026 37.500 0.00 0.00 0.00 5.07
5390 7626 7.104043 ACTCTGTTTTATGTGGTATACGCTA 57.896 36.000 0.00 0.00 0.00 4.26
5391 7627 7.201145 ACTCTGTTTTATGTGGTATACGCTAG 58.799 38.462 0.00 0.00 0.00 3.42
5392 7628 7.104043 TCTGTTTTATGTGGTATACGCTAGT 57.896 36.000 0.00 0.00 0.00 2.57
5393 7629 6.976349 TCTGTTTTATGTGGTATACGCTAGTG 59.024 38.462 0.59 0.59 0.00 2.74
5394 7630 5.521010 TGTTTTATGTGGTATACGCTAGTGC 59.479 40.000 2.40 0.00 0.00 4.40
5412 7648 2.125912 GTGTCCACGAGCGCAGAT 60.126 61.111 11.47 0.00 0.00 2.90
5413 7649 1.738099 GTGTCCACGAGCGCAGATT 60.738 57.895 11.47 0.00 0.00 2.40
5414 7650 1.005037 TGTCCACGAGCGCAGATTT 60.005 52.632 11.47 0.00 0.00 2.17
5415 7651 0.602638 TGTCCACGAGCGCAGATTTT 60.603 50.000 11.47 0.00 0.00 1.82
5416 7652 0.095417 GTCCACGAGCGCAGATTTTC 59.905 55.000 11.47 0.00 0.00 2.29
5417 7653 0.037326 TCCACGAGCGCAGATTTTCT 60.037 50.000 11.47 0.00 0.00 2.52
5418 7654 0.798776 CCACGAGCGCAGATTTTCTT 59.201 50.000 11.47 0.00 0.00 2.52
5419 7655 1.464687 CCACGAGCGCAGATTTTCTTG 60.465 52.381 11.47 0.37 0.00 3.02
5420 7656 1.195448 CACGAGCGCAGATTTTCTTGT 59.805 47.619 11.47 0.00 0.00 3.16
5421 7657 2.411748 CACGAGCGCAGATTTTCTTGTA 59.588 45.455 11.47 0.00 0.00 2.41
5422 7658 3.062639 CACGAGCGCAGATTTTCTTGTAT 59.937 43.478 11.47 0.00 0.00 2.29
5423 7659 3.062639 ACGAGCGCAGATTTTCTTGTATG 59.937 43.478 11.47 0.00 0.00 2.39
5424 7660 3.306973 CGAGCGCAGATTTTCTTGTATGA 59.693 43.478 11.47 0.00 0.00 2.15
5425 7661 4.025396 CGAGCGCAGATTTTCTTGTATGAT 60.025 41.667 11.47 0.00 0.00 2.45
5426 7662 5.503031 CGAGCGCAGATTTTCTTGTATGATT 60.503 40.000 11.47 0.00 0.00 2.57
5427 7663 5.575957 AGCGCAGATTTTCTTGTATGATTG 58.424 37.500 11.47 0.00 0.00 2.67
5428 7664 4.205792 GCGCAGATTTTCTTGTATGATTGC 59.794 41.667 0.30 0.00 0.00 3.56
5429 7665 5.334319 CGCAGATTTTCTTGTATGATTGCA 58.666 37.500 0.00 0.00 0.00 4.08
5430 7666 5.454554 CGCAGATTTTCTTGTATGATTGCAG 59.545 40.000 0.00 0.00 0.00 4.41
5431 7667 6.558009 GCAGATTTTCTTGTATGATTGCAGA 58.442 36.000 0.00 0.00 0.00 4.26
5432 7668 7.031372 GCAGATTTTCTTGTATGATTGCAGAA 58.969 34.615 0.00 0.00 0.00 3.02
5433 7669 7.543172 GCAGATTTTCTTGTATGATTGCAGAAA 59.457 33.333 0.00 0.00 0.00 2.52
5434 7670 9.414295 CAGATTTTCTTGTATGATTGCAGAAAA 57.586 29.630 7.61 7.61 37.90 2.29
5435 7671 9.635520 AGATTTTCTTGTATGATTGCAGAAAAG 57.364 29.630 10.26 0.00 37.26 2.27
5436 7672 9.415544 GATTTTCTTGTATGATTGCAGAAAAGT 57.584 29.630 10.26 1.53 37.26 2.66
5437 7673 9.768662 ATTTTCTTGTATGATTGCAGAAAAGTT 57.231 25.926 10.26 0.00 37.26 2.66
5438 7674 9.598517 TTTTCTTGTATGATTGCAGAAAAGTTT 57.401 25.926 0.00 0.00 33.32 2.66
5443 7679 9.787532 TTGTATGATTGCAGAAAAGTTTATAGC 57.212 29.630 0.00 0.00 0.00 2.97
5444 7680 9.177608 TGTATGATTGCAGAAAAGTTTATAGCT 57.822 29.630 0.00 0.00 0.00 3.32
5445 7681 9.443283 GTATGATTGCAGAAAAGTTTATAGCTG 57.557 33.333 0.00 0.00 0.00 4.24
5446 7682 6.855836 TGATTGCAGAAAAGTTTATAGCTGG 58.144 36.000 0.00 0.00 0.00 4.85
5447 7683 6.434028 TGATTGCAGAAAAGTTTATAGCTGGT 59.566 34.615 0.00 0.00 0.00 4.00
5448 7684 5.880054 TGCAGAAAAGTTTATAGCTGGTC 57.120 39.130 0.00 0.00 0.00 4.02
5449 7685 5.312895 TGCAGAAAAGTTTATAGCTGGTCA 58.687 37.500 0.00 0.00 0.00 4.02
5450 7686 5.767665 TGCAGAAAAGTTTATAGCTGGTCAA 59.232 36.000 0.00 0.00 0.00 3.18
5451 7687 6.264292 TGCAGAAAAGTTTATAGCTGGTCAAA 59.736 34.615 0.00 0.00 0.00 2.69
5452 7688 6.582672 GCAGAAAAGTTTATAGCTGGTCAAAC 59.417 38.462 0.00 1.40 0.00 2.93
5453 7689 7.522236 GCAGAAAAGTTTATAGCTGGTCAAACT 60.522 37.037 11.50 11.50 41.67 2.66
5454 7690 8.999431 CAGAAAAGTTTATAGCTGGTCAAACTA 58.001 33.333 15.49 0.00 39.62 2.24
5455 7691 9.220767 AGAAAAGTTTATAGCTGGTCAAACTAG 57.779 33.333 15.49 0.00 39.62 2.57
5456 7692 9.216117 GAAAAGTTTATAGCTGGTCAAACTAGA 57.784 33.333 15.49 0.00 39.62 2.43
5457 7693 8.549338 AAAGTTTATAGCTGGTCAAACTAGAC 57.451 34.615 15.49 0.00 39.62 2.59
5458 7694 7.241042 AGTTTATAGCTGGTCAAACTAGACA 57.759 36.000 14.25 0.00 38.96 3.41
5459 7695 7.097834 AGTTTATAGCTGGTCAAACTAGACAC 58.902 38.462 14.25 0.00 38.96 3.67
5460 7696 6.599356 TTATAGCTGGTCAAACTAGACACA 57.401 37.500 0.00 0.00 40.29 3.72
5461 7697 5.683876 ATAGCTGGTCAAACTAGACACAT 57.316 39.130 0.00 0.00 40.29 3.21
5462 7698 4.357918 AGCTGGTCAAACTAGACACATT 57.642 40.909 0.00 0.00 40.29 2.71
5463 7699 4.067896 AGCTGGTCAAACTAGACACATTG 58.932 43.478 0.00 0.00 40.29 2.82
5464 7700 3.189287 GCTGGTCAAACTAGACACATTGG 59.811 47.826 0.00 0.00 40.29 3.16
5465 7701 4.641396 CTGGTCAAACTAGACACATTGGA 58.359 43.478 0.00 0.00 40.29 3.53
5466 7702 5.241403 TGGTCAAACTAGACACATTGGAT 57.759 39.130 0.00 0.00 40.29 3.41
5467 7703 5.630121 TGGTCAAACTAGACACATTGGATT 58.370 37.500 0.00 0.00 40.29 3.01
5468 7704 6.068010 TGGTCAAACTAGACACATTGGATTT 58.932 36.000 0.00 0.00 40.29 2.17
5469 7705 6.549364 TGGTCAAACTAGACACATTGGATTTT 59.451 34.615 0.00 0.00 40.29 1.82
5470 7706 7.069331 TGGTCAAACTAGACACATTGGATTTTT 59.931 33.333 0.00 0.00 40.29 1.94
5507 7743 9.672086 TGAATAAAAATAACGACACTTTTCTGG 57.328 29.630 0.00 0.00 0.00 3.86
5508 7744 9.673454 GAATAAAAATAACGACACTTTTCTGGT 57.327 29.630 0.00 0.00 0.00 4.00
5509 7745 9.458374 AATAAAAATAACGACACTTTTCTGGTG 57.542 29.630 0.00 0.00 40.19 4.17
5511 7747 6.445357 AAATAACGACACTTTTCTGGTGTT 57.555 33.333 0.00 0.00 46.23 3.32
5512 7748 3.757745 AACGACACTTTTCTGGTGTTG 57.242 42.857 11.29 11.29 46.23 3.33
5513 7749 2.980568 ACGACACTTTTCTGGTGTTGA 58.019 42.857 17.61 0.00 46.39 3.18
5514 7750 3.541632 ACGACACTTTTCTGGTGTTGAT 58.458 40.909 17.61 3.49 46.39 2.57
5515 7751 4.699637 ACGACACTTTTCTGGTGTTGATA 58.300 39.130 17.61 0.00 46.39 2.15
5516 7752 5.305585 ACGACACTTTTCTGGTGTTGATAT 58.694 37.500 17.61 0.00 46.39 1.63
5517 7753 6.460781 ACGACACTTTTCTGGTGTTGATATA 58.539 36.000 17.61 0.00 46.39 0.86
5518 7754 6.367969 ACGACACTTTTCTGGTGTTGATATAC 59.632 38.462 17.61 0.00 46.39 1.47
5519 7755 6.590292 CGACACTTTTCTGGTGTTGATATACT 59.410 38.462 8.10 0.00 46.39 2.12
5520 7756 7.201444 CGACACTTTTCTGGTGTTGATATACTC 60.201 40.741 8.10 0.00 46.39 2.59
5521 7757 6.879458 ACACTTTTCTGGTGTTGATATACTCC 59.121 38.462 0.00 0.00 44.25 3.85
5522 7758 6.316390 CACTTTTCTGGTGTTGATATACTCCC 59.684 42.308 0.00 0.00 32.08 4.30
5523 7759 6.215636 ACTTTTCTGGTGTTGATATACTCCCT 59.784 38.462 0.00 0.00 32.08 4.20
5524 7760 5.871396 TTCTGGTGTTGATATACTCCCTC 57.129 43.478 0.00 0.00 32.08 4.30
5525 7761 5.144159 TCTGGTGTTGATATACTCCCTCT 57.856 43.478 0.00 0.00 32.08 3.69
5526 7762 4.895889 TCTGGTGTTGATATACTCCCTCTG 59.104 45.833 0.00 0.00 32.08 3.35
5527 7763 4.620723 TGGTGTTGATATACTCCCTCTGT 58.379 43.478 0.00 0.00 32.08 3.41
5528 7764 5.030147 TGGTGTTGATATACTCCCTCTGTT 58.970 41.667 0.00 0.00 32.08 3.16
5529 7765 5.128827 TGGTGTTGATATACTCCCTCTGTTC 59.871 44.000 0.00 0.00 32.08 3.18
5530 7766 5.364157 GGTGTTGATATACTCCCTCTGTTCT 59.636 44.000 0.00 0.00 0.00 3.01
5531 7767 6.127026 GGTGTTGATATACTCCCTCTGTTCTT 60.127 42.308 0.00 0.00 0.00 2.52
5532 7768 7.069578 GGTGTTGATATACTCCCTCTGTTCTTA 59.930 40.741 0.00 0.00 0.00 2.10
5533 7769 8.475639 GTGTTGATATACTCCCTCTGTTCTTAA 58.524 37.037 0.00 0.00 0.00 1.85
5534 7770 9.042450 TGTTGATATACTCCCTCTGTTCTTAAA 57.958 33.333 0.00 0.00 0.00 1.52
5543 7779 9.588096 ACTCCCTCTGTTCTTAAATATTTGTTT 57.412 29.630 11.05 0.00 0.00 2.83
5570 7806 9.607988 TTCTAGAAATTTCAACAAGTGACTACA 57.392 29.630 19.99 0.00 35.39 2.74
5571 7807 9.778741 TCTAGAAATTTCAACAAGTGACTACAT 57.221 29.630 19.99 0.00 35.39 2.29
5572 7808 9.817365 CTAGAAATTTCAACAAGTGACTACATG 57.183 33.333 19.99 0.00 35.39 3.21
5573 7809 7.141363 AGAAATTTCAACAAGTGACTACATGC 58.859 34.615 19.99 0.00 35.39 4.06
5574 7810 4.466567 TTTCAACAAGTGACTACATGCG 57.533 40.909 0.00 0.00 35.39 4.73
5575 7811 2.412870 TCAACAAGTGACTACATGCGG 58.587 47.619 0.00 0.00 0.00 5.69
5576 7812 2.036604 TCAACAAGTGACTACATGCGGA 59.963 45.455 0.00 0.00 0.00 5.54
5577 7813 2.370281 ACAAGTGACTACATGCGGAG 57.630 50.000 0.00 0.00 0.00 4.63
5595 7831 5.149054 CGGAGCAAAATGAATGAGTCTAC 57.851 43.478 0.00 0.00 0.00 2.59
5596 7832 4.631377 CGGAGCAAAATGAATGAGTCTACA 59.369 41.667 0.00 0.00 0.00 2.74
5597 7833 5.446473 CGGAGCAAAATGAATGAGTCTACAC 60.446 44.000 0.00 0.00 0.00 2.90
5598 7834 5.645497 GGAGCAAAATGAATGAGTCTACACT 59.355 40.000 0.00 0.00 34.57 3.55
5599 7835 6.150140 GGAGCAAAATGAATGAGTCTACACTT 59.850 38.462 0.00 0.00 30.63 3.16
5600 7836 7.308830 GGAGCAAAATGAATGAGTCTACACTTT 60.309 37.037 0.00 0.00 30.63 2.66
5601 7837 8.621532 AGCAAAATGAATGAGTCTACACTTTA 57.378 30.769 0.00 0.00 30.63 1.85
5602 7838 9.066892 AGCAAAATGAATGAGTCTACACTTTAA 57.933 29.630 0.00 0.00 30.63 1.52
5603 7839 9.677567 GCAAAATGAATGAGTCTACACTTTAAA 57.322 29.630 0.00 0.00 30.63 1.52
5629 7865 9.901172 ACTATGTCTATATACATCCGTATGTGA 57.099 33.333 3.56 0.00 45.99 3.58
5633 7869 9.901172 TGTCTATATACATCCGTATGTGATAGT 57.099 33.333 17.08 3.55 45.99 2.12
5635 7871 9.557061 TCTATATACATCCGTATGTGATAGTCC 57.443 37.037 17.08 0.00 45.99 3.85
5636 7872 9.338622 CTATATACATCCGTATGTGATAGTCCA 57.661 37.037 3.56 0.00 45.99 4.02
5637 7873 8.768501 ATATACATCCGTATGTGATAGTCCAT 57.231 34.615 3.56 0.00 45.99 3.41
5638 7874 5.808366 ACATCCGTATGTGATAGTCCATT 57.192 39.130 0.00 0.00 44.79 3.16
5639 7875 6.174720 ACATCCGTATGTGATAGTCCATTT 57.825 37.500 0.00 0.00 44.79 2.32
5640 7876 5.991606 ACATCCGTATGTGATAGTCCATTTG 59.008 40.000 0.00 0.00 44.79 2.32
5641 7877 5.862678 TCCGTATGTGATAGTCCATTTGA 57.137 39.130 0.00 0.00 0.00 2.69
5642 7878 6.228616 TCCGTATGTGATAGTCCATTTGAA 57.771 37.500 0.00 0.00 0.00 2.69
5643 7879 6.645306 TCCGTATGTGATAGTCCATTTGAAA 58.355 36.000 0.00 0.00 0.00 2.69
5644 7880 7.279615 TCCGTATGTGATAGTCCATTTGAAAT 58.720 34.615 0.00 0.00 0.00 2.17
5645 7881 7.441157 TCCGTATGTGATAGTCCATTTGAAATC 59.559 37.037 0.00 0.00 0.00 2.17
5646 7882 7.442364 CCGTATGTGATAGTCCATTTGAAATCT 59.558 37.037 0.00 0.00 0.00 2.40
5647 7883 8.491152 CGTATGTGATAGTCCATTTGAAATCTC 58.509 37.037 0.00 0.00 0.00 2.75
5648 7884 9.553064 GTATGTGATAGTCCATTTGAAATCTCT 57.447 33.333 0.00 0.00 0.00 3.10
5651 7887 9.958180 TGTGATAGTCCATTTGAAATCTCTAAA 57.042 29.630 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.305813 CGGCCTTGTAGTCTAAGTGTTCA 60.306 47.826 0.00 0.00 0.00 3.18
25 26 1.619807 GGCCCGGCCTTGTAGTCTAA 61.620 60.000 22.31 0.00 46.69 2.10
68 73 1.964552 CTGGGCTATGGCTTGAGAAG 58.035 55.000 0.00 0.00 38.73 2.85
126 131 2.562298 TGGGCTTCATGGCAGTAAAAAG 59.438 45.455 0.00 0.00 43.83 2.27
131 136 0.676466 CGTTGGGCTTCATGGCAGTA 60.676 55.000 0.00 0.00 43.83 2.74
160 165 4.037923 TGGGCTTCACTTTCTCAACATTTC 59.962 41.667 0.00 0.00 0.00 2.17
184 189 3.565482 TCCAAAAGTGCATTCAGTCAGTC 59.435 43.478 0.00 0.00 0.00 3.51
185 190 3.316308 GTCCAAAAGTGCATTCAGTCAGT 59.684 43.478 0.00 0.00 0.00 3.41
186 191 3.567164 AGTCCAAAAGTGCATTCAGTCAG 59.433 43.478 0.00 0.00 0.00 3.51
187 192 3.316029 CAGTCCAAAAGTGCATTCAGTCA 59.684 43.478 0.00 0.00 0.00 3.41
214 220 2.074967 CTGGGTGTTAAGGGGCTGA 58.925 57.895 0.00 0.00 0.00 4.26
219 225 0.250989 TTTCGGCTGGGTGTTAAGGG 60.251 55.000 0.00 0.00 0.00 3.95
224 230 1.826487 GGTGTTTCGGCTGGGTGTT 60.826 57.895 0.00 0.00 0.00 3.32
225 231 2.203294 GGTGTTTCGGCTGGGTGT 60.203 61.111 0.00 0.00 0.00 4.16
226 232 2.983592 GGGTGTTTCGGCTGGGTG 60.984 66.667 0.00 0.00 0.00 4.61
227 233 4.280019 GGGGTGTTTCGGCTGGGT 62.280 66.667 0.00 0.00 0.00 4.51
228 234 2.132089 TTAGGGGTGTTTCGGCTGGG 62.132 60.000 0.00 0.00 0.00 4.45
230 236 1.611519 TTTTAGGGGTGTTTCGGCTG 58.388 50.000 0.00 0.00 0.00 4.85
231 237 2.368311 TTTTTAGGGGTGTTTCGGCT 57.632 45.000 0.00 0.00 0.00 5.52
247 253 1.826709 CCGTTTGGGCTGGGTTTTT 59.173 52.632 0.00 0.00 0.00 1.94
248 254 3.544772 CCGTTTGGGCTGGGTTTT 58.455 55.556 0.00 0.00 0.00 2.43
271 2011 1.203237 GCCCAAAAATACCAGGCCAT 58.797 50.000 5.01 0.00 37.66 4.40
379 2125 0.973423 GACGACGACTTAGTGTTCGC 59.027 55.000 0.00 2.90 33.58 4.70
511 2274 2.908940 GGCGGCATTGATGGAGGG 60.909 66.667 3.07 0.00 0.00 4.30
514 2277 2.440065 GGTGGCGGCATTGATGGA 60.440 61.111 17.19 0.00 0.00 3.41
585 2349 1.151587 ATGAGGTGGAGGTGGGGTT 60.152 57.895 0.00 0.00 0.00 4.11
701 2465 2.437716 CGGGGGCGTTTATGTGCT 60.438 61.111 0.00 0.00 0.00 4.40
702 2466 2.748647 ACGGGGGCGTTTATGTGC 60.749 61.111 0.00 0.00 0.00 4.57
703 2467 2.110352 GGACGGGGGCGTTTATGTG 61.110 63.158 0.00 0.00 0.00 3.21
704 2468 2.269883 GGACGGGGGCGTTTATGT 59.730 61.111 0.00 0.00 0.00 2.29
736 2501 4.872664 AGAATAAGTAAGCGGATCGAAGG 58.127 43.478 0.00 0.00 0.00 3.46
738 2503 4.506654 GCAAGAATAAGTAAGCGGATCGAA 59.493 41.667 0.00 0.00 0.00 3.71
784 2556 4.024387 GTGGAACAGTAATCAAACGCAAGA 60.024 41.667 0.00 0.00 41.80 3.02
847 2619 0.036294 CCAGTCCCCCGAGAAAGTTC 60.036 60.000 0.00 0.00 0.00 3.01
871 2643 1.621814 CTCACCAACCTCGGACCTAAA 59.378 52.381 0.00 0.00 0.00 1.85
878 2650 2.027625 GTTCGCTCACCAACCTCGG 61.028 63.158 0.00 0.00 0.00 4.63
911 2683 1.693083 ATCGAACACCTTAAGCGCGC 61.693 55.000 26.66 26.66 0.00 6.86
952 2724 1.888512 TCAGAAATGGCTGAAAGGTGC 59.111 47.619 0.00 0.00 41.65 5.01
953 2725 4.015084 AGATCAGAAATGGCTGAAAGGTG 58.985 43.478 0.00 0.00 46.94 4.00
963 2735 2.267174 ATCCGGCAGATCAGAAATGG 57.733 50.000 0.00 0.00 0.00 3.16
965 2737 2.579873 CCAATCCGGCAGATCAGAAAT 58.420 47.619 0.00 0.00 32.47 2.17
969 2741 0.107017 AACCCAATCCGGCAGATCAG 60.107 55.000 0.00 0.00 32.47 2.90
972 2744 0.916086 TGTAACCCAATCCGGCAGAT 59.084 50.000 0.00 0.00 36.48 2.90
974 2746 1.094785 CTTGTAACCCAATCCGGCAG 58.905 55.000 0.00 0.00 31.20 4.85
975 2747 0.322997 CCTTGTAACCCAATCCGGCA 60.323 55.000 0.00 0.00 31.20 5.69
976 2748 1.035385 CCCTTGTAACCCAATCCGGC 61.035 60.000 0.00 0.00 31.20 6.13
978 2750 1.373590 CGCCCTTGTAACCCAATCCG 61.374 60.000 0.00 0.00 31.20 4.18
989 2761 2.579201 CGACCATCTCGCCCTTGT 59.421 61.111 0.00 0.00 35.06 3.16
995 2767 4.933064 CGCTCCCGACCATCTCGC 62.933 72.222 0.00 0.00 41.46 5.03
996 2768 3.518998 ACGCTCCCGACCATCTCG 61.519 66.667 0.00 0.00 42.54 4.04
1273 3058 2.681778 CCTCAGCACGTCCTCCCT 60.682 66.667 0.00 0.00 0.00 4.20
1341 3126 2.643232 GGCGTACAAGGTCCGGTCT 61.643 63.158 0.00 0.00 0.00 3.85
1351 3136 2.425668 TCAAGATCTCATCGGCGTACAA 59.574 45.455 6.85 0.00 0.00 2.41
1362 3147 2.575921 ACCCATCCCTCAAGATCTCA 57.424 50.000 0.00 0.00 0.00 3.27
1386 3171 0.584396 GCGTGTCGACCATGTTCAAA 59.416 50.000 14.12 0.00 32.30 2.69
1476 3261 2.433318 GTCTCAGTGGACGGCAGC 60.433 66.667 0.00 0.00 0.00 5.25
1655 3440 8.402798 AGAATATATGTGACCAACAAACACAA 57.597 30.769 0.00 0.00 45.34 3.33
1659 3444 9.113838 AGATGAGAATATATGTGACCAACAAAC 57.886 33.333 0.00 0.00 43.61 2.93
1690 3475 5.163530 GGATACCAAATGATTGCACACATCA 60.164 40.000 2.16 2.16 35.10 3.07
1695 3480 4.954826 TCATGGATACCAAATGATTGCACA 59.045 37.500 0.00 0.00 36.95 4.57
1729 3514 6.128172 ACTGCAGTAGAAAATAACTGATGCAC 60.128 38.462 20.16 0.00 44.79 4.57
1786 3596 6.954684 AGTTGGTCTCCAGAAAGTTCTCTATA 59.045 38.462 0.00 0.00 34.74 1.31
1840 3650 5.260027 GCATGTTTTTGCTTTGATCAGAC 57.740 39.130 0.00 0.00 39.57 3.51
1875 3685 7.821595 AATGTCAAACATTGCAGAATACATG 57.178 32.000 4.59 0.00 46.18 3.21
1943 3753 7.540474 ACTAATCAGACCAAAAGACTACAGA 57.460 36.000 0.00 0.00 0.00 3.41
2094 3905 2.953648 TGCAATAGGCTGATGTGATTGG 59.046 45.455 0.00 0.00 45.15 3.16
2131 3942 8.352201 CAGGAAAAGTCAACATCTGTTTTCATA 58.648 33.333 7.83 0.00 38.37 2.15
2191 4013 3.455910 TCAAATCCATCCCAGGTGAGTAG 59.544 47.826 0.00 0.00 0.00 2.57
2340 4162 5.465390 TGTCAAGATCAAAACGTCTTTCGAT 59.535 36.000 0.00 0.00 42.86 3.59
2391 4214 5.163343 GGGGTCACTATGCTAACTGTCATAA 60.163 44.000 0.00 0.00 0.00 1.90
2396 4219 2.834113 AGGGGTCACTATGCTAACTGT 58.166 47.619 0.00 0.00 0.00 3.55
2414 4237 3.971305 TGGTAGGTGATGTATACCCAAGG 59.029 47.826 0.00 0.00 38.56 3.61
2459 4282 4.822026 CTCTTCAAATCGAACAGGGTACT 58.178 43.478 0.00 0.00 0.00 2.73
2516 4339 3.945921 CCAAGTCAGAAGATGTGCATCAT 59.054 43.478 13.79 2.45 40.22 2.45
2702 4525 1.698506 TTTCCGAGGCAATGTTTGGT 58.301 45.000 0.00 0.00 0.00 3.67
2778 4601 2.222027 CCTCAAAAACTTGGCGAGAGT 58.778 47.619 9.20 0.00 0.00 3.24
2786 4609 3.244033 TGTGGTTGCCTCAAAAACTTG 57.756 42.857 0.00 0.00 0.00 3.16
2918 4741 5.236695 GTCCCTATTTCGGTGAGCTAAATTC 59.763 44.000 0.00 0.00 0.00 2.17
2924 4747 1.568504 TGTCCCTATTTCGGTGAGCT 58.431 50.000 0.00 0.00 0.00 4.09
2974 4892 3.008704 ACAAGGTAGGACCGTAAAAGCAT 59.991 43.478 0.00 0.00 44.90 3.79
2975 4893 2.369532 ACAAGGTAGGACCGTAAAAGCA 59.630 45.455 0.00 0.00 44.90 3.91
2995 4914 9.196552 GCCTTCTTCAATAATTAAATGCCATAC 57.803 33.333 0.00 0.00 0.00 2.39
3005 4924 9.851686 ACATATCTGTGCCTTCTTCAATAATTA 57.148 29.630 0.00 0.00 33.22 1.40
3023 4942 8.815189 CAGATCAAGTAAACTCACACATATCTG 58.185 37.037 0.00 0.00 32.27 2.90
3075 4994 1.802880 GCCTGTCCATACACTACTGCG 60.803 57.143 0.00 0.00 0.00 5.18
3076 4995 1.482593 AGCCTGTCCATACACTACTGC 59.517 52.381 0.00 0.00 0.00 4.40
3086 5005 4.702131 GTGATTTCAAGTTAGCCTGTCCAT 59.298 41.667 0.00 0.00 0.00 3.41
3147 5074 9.850198 TGTGAATATCCTGTGATTTAATGATCA 57.150 29.630 0.00 0.00 33.81 2.92
3150 5077 9.904198 TCTTGTGAATATCCTGTGATTTAATGA 57.096 29.630 0.00 0.00 32.18 2.57
3153 5080 9.177608 CCTTCTTGTGAATATCCTGTGATTTAA 57.822 33.333 0.00 0.00 32.18 1.52
3154 5081 7.775093 CCCTTCTTGTGAATATCCTGTGATTTA 59.225 37.037 0.00 0.00 32.18 1.40
3155 5082 6.604795 CCCTTCTTGTGAATATCCTGTGATTT 59.395 38.462 0.00 0.00 32.18 2.17
3156 5083 6.069440 TCCCTTCTTGTGAATATCCTGTGATT 60.069 38.462 0.00 0.00 32.18 2.57
3157 5084 5.429762 TCCCTTCTTGTGAATATCCTGTGAT 59.570 40.000 0.00 0.00 34.87 3.06
3158 5085 4.782691 TCCCTTCTTGTGAATATCCTGTGA 59.217 41.667 0.00 0.00 0.00 3.58
3159 5086 5.102953 TCCCTTCTTGTGAATATCCTGTG 57.897 43.478 0.00 0.00 0.00 3.66
3160 5087 5.983333 ATCCCTTCTTGTGAATATCCTGT 57.017 39.130 0.00 0.00 0.00 4.00
3251 5178 3.881937 AAATTGCCATGAAGCTTCTCC 57.118 42.857 26.09 12.36 0.00 3.71
3309 5236 7.307160 GGCAAGAAAAGGCAAATAACTAAACAC 60.307 37.037 0.00 0.00 0.00 3.32
3393 5321 0.251077 AAGGTTCTGCTTGAGCTGGG 60.251 55.000 9.54 0.00 42.66 4.45
3415 5343 3.755378 CCACCATTCCTGAAACAGAGAAG 59.245 47.826 0.00 0.00 32.44 2.85
3565 5493 5.162075 CCTTTCAGGAGAGTTACGTAAGTG 58.838 45.833 20.07 5.81 46.09 3.16
3589 5517 2.024588 CCGTACCATGCATTGCGC 59.975 61.111 0.00 0.00 42.89 6.09
3680 5608 6.551385 AAGAAAAGAACACTGCTATGACAG 57.449 37.500 0.00 0.00 43.59 3.51
3853 5782 2.289547 GCTAAAGCGAACCAACAACTCA 59.710 45.455 0.00 0.00 0.00 3.41
3906 5835 5.248640 CCTGTCCAATGAAATACACAGAGT 58.751 41.667 0.00 0.00 32.12 3.24
4116 6045 8.770828 GTTAAAGCACTCTGTACATAGTTCAAA 58.229 33.333 10.96 1.54 0.00 2.69
4119 6048 7.884816 TGTTAAAGCACTCTGTACATAGTTC 57.115 36.000 10.96 7.01 0.00 3.01
4120 6049 7.891183 CTGTTAAAGCACTCTGTACATAGTT 57.109 36.000 10.96 0.55 0.00 2.24
4161 6090 2.597578 AGGGGCAGAATTTACGGTTT 57.402 45.000 0.00 0.00 0.00 3.27
4165 6094 1.933853 CGAGAAGGGGCAGAATTTACG 59.066 52.381 0.00 0.00 0.00 3.18
4167 6096 1.408266 GGCGAGAAGGGGCAGAATTTA 60.408 52.381 0.00 0.00 0.00 1.40
4173 6102 3.672295 GACAGGCGAGAAGGGGCAG 62.672 68.421 0.00 0.00 0.00 4.85
4184 6113 2.401766 GCAATGGACCAGACAGGCG 61.402 63.158 0.00 0.00 43.14 5.52
4187 6116 2.401766 GCGGCAATGGACCAGACAG 61.402 63.158 0.00 0.00 0.00 3.51
4192 6121 0.107703 CTAGAAGCGGCAATGGACCA 60.108 55.000 1.45 0.00 0.00 4.02
4193 6122 0.107654 ACTAGAAGCGGCAATGGACC 60.108 55.000 1.45 0.00 0.00 4.46
4194 6123 1.291132 GACTAGAAGCGGCAATGGAC 58.709 55.000 1.45 0.00 0.00 4.02
4213 6142 1.394917 GAGTTATGCTGGCAAGTGACG 59.605 52.381 0.00 0.00 0.00 4.35
4246 6227 3.062763 CGGCTCTATGCTCATAAACTGG 58.937 50.000 0.00 0.00 42.39 4.00
4255 6236 1.006314 GCATCGTCGGCTCTATGCTC 61.006 60.000 10.46 0.00 41.16 4.26
4374 6534 9.927668 ATGGAAAACCAGAGTAAAAATGTAATG 57.072 29.630 0.00 0.00 0.00 1.90
4381 6541 7.889873 TTCTCATGGAAAACCAGAGTAAAAA 57.110 32.000 0.00 0.00 0.00 1.94
4404 6564 9.260002 GTTCAGTGTGATGGTTTGATAAATTTT 57.740 29.630 0.00 0.00 0.00 1.82
4411 6571 4.464008 ACTGTTCAGTGTGATGGTTTGAT 58.536 39.130 4.58 0.00 0.00 2.57
4435 6595 4.978099 ACTGATGGTTGATCTTGTCTTGT 58.022 39.130 0.00 0.00 31.55 3.16
4457 6617 3.317993 GCTCAAAGGTTGCTTGGTAGAAA 59.682 43.478 0.00 0.00 0.00 2.52
4460 6620 1.541588 GGCTCAAAGGTTGCTTGGTAG 59.458 52.381 0.00 0.00 0.00 3.18
4462 6622 0.396974 TGGCTCAAAGGTTGCTTGGT 60.397 50.000 0.00 0.00 0.00 3.67
4519 6679 3.139770 AGCTCCCTGCAGATTCCAAATAT 59.860 43.478 17.39 0.00 45.94 1.28
4521 6681 1.287146 AGCTCCCTGCAGATTCCAAAT 59.713 47.619 17.39 0.00 45.94 2.32
4593 6753 1.598882 CCATCTCGATCCTCTCACGA 58.401 55.000 0.00 0.00 34.90 4.35
4667 6827 2.112190 TCTAATCATGTACACGGGGCA 58.888 47.619 0.00 0.00 0.00 5.36
4779 6944 0.967380 GGCCTGGGATCCAAACACAG 60.967 60.000 15.23 10.85 38.37 3.66
4827 6997 5.303078 ACTCTCTTGTACAACATGACAGTCT 59.697 40.000 3.59 0.00 29.94 3.24
4853 7023 8.978539 GTAGCAACATATTATTCACTCGATCAA 58.021 33.333 0.00 0.00 0.00 2.57
4928 7098 9.292846 CCGGCTATTTAAAACTATGGTTAAAAC 57.707 33.333 0.00 0.00 33.99 2.43
4929 7099 7.975058 GCCGGCTATTTAAAACTATGGTTAAAA 59.025 33.333 22.15 0.14 33.99 1.52
4930 7100 7.339976 AGCCGGCTATTTAAAACTATGGTTAAA 59.660 33.333 31.86 0.00 34.90 1.52
4931 7101 6.829811 AGCCGGCTATTTAAAACTATGGTTAA 59.170 34.615 31.86 0.00 34.90 2.01
4932 7102 6.358991 AGCCGGCTATTTAAAACTATGGTTA 58.641 36.000 31.86 0.00 34.90 2.85
4933 7103 5.198207 AGCCGGCTATTTAAAACTATGGTT 58.802 37.500 31.86 0.00 37.24 3.67
4934 7104 4.788679 AGCCGGCTATTTAAAACTATGGT 58.211 39.130 31.86 0.00 0.00 3.55
4935 7105 7.201617 GCTATAGCCGGCTATTTAAAACTATGG 60.202 40.741 44.65 25.96 39.65 2.74
4936 7106 7.549488 AGCTATAGCCGGCTATTTAAAACTATG 59.451 37.037 44.65 24.19 43.38 2.23
4937 7107 7.621796 AGCTATAGCCGGCTATTTAAAACTAT 58.378 34.615 44.65 26.21 43.38 2.12
4938 7108 7.001099 AGCTATAGCCGGCTATTTAAAACTA 57.999 36.000 44.65 27.23 43.38 2.24
4939 7109 5.866207 AGCTATAGCCGGCTATTTAAAACT 58.134 37.500 44.65 29.88 43.38 2.66
4940 7110 5.121925 GGAGCTATAGCCGGCTATTTAAAAC 59.878 44.000 44.65 30.15 43.38 2.43
4941 7111 5.243207 GGAGCTATAGCCGGCTATTTAAAA 58.757 41.667 44.65 29.19 43.38 1.52
4942 7112 4.619863 CGGAGCTATAGCCGGCTATTTAAA 60.620 45.833 44.65 29.52 43.67 1.52
4943 7113 3.119245 CGGAGCTATAGCCGGCTATTTAA 60.119 47.826 44.65 29.85 43.67 1.52
4944 7114 2.426024 CGGAGCTATAGCCGGCTATTTA 59.574 50.000 44.65 30.51 43.67 1.40
4945 7115 1.204941 CGGAGCTATAGCCGGCTATTT 59.795 52.381 44.65 31.93 43.67 1.40
4946 7116 0.818296 CGGAGCTATAGCCGGCTATT 59.182 55.000 44.65 31.45 43.67 1.73
4947 7117 2.494677 CGGAGCTATAGCCGGCTAT 58.505 57.895 42.09 42.09 43.67 2.97
4948 7118 3.998156 CGGAGCTATAGCCGGCTA 58.002 61.111 36.88 36.88 43.67 3.93
4971 7141 1.750399 CATTTAGCGGCACCCTGCT 60.750 57.895 1.45 2.32 44.28 4.24
4972 7142 2.774799 CCATTTAGCGGCACCCTGC 61.775 63.158 1.45 0.00 44.08 4.85
4973 7143 0.965363 AACCATTTAGCGGCACCCTG 60.965 55.000 1.45 0.00 0.00 4.45
4974 7144 0.965363 CAACCATTTAGCGGCACCCT 60.965 55.000 1.45 0.00 0.00 4.34
4975 7145 1.510844 CAACCATTTAGCGGCACCC 59.489 57.895 1.45 0.00 0.00 4.61
4976 7146 1.153842 GCAACCATTTAGCGGCACC 60.154 57.895 1.45 0.00 0.00 5.01
4977 7147 1.091537 TAGCAACCATTTAGCGGCAC 58.908 50.000 1.45 0.00 0.00 5.01
4978 7148 1.946768 GATAGCAACCATTTAGCGGCA 59.053 47.619 1.45 0.00 0.00 5.69
4979 7149 1.946768 TGATAGCAACCATTTAGCGGC 59.053 47.619 0.00 0.00 0.00 6.53
4980 7150 2.942376 TGTGATAGCAACCATTTAGCGG 59.058 45.455 0.00 0.00 0.00 5.52
4981 7151 4.614555 TTGTGATAGCAACCATTTAGCG 57.385 40.909 0.00 0.00 0.00 4.26
4982 7152 6.638468 GCTATTTGTGATAGCAACCATTTAGC 59.362 38.462 11.93 0.00 44.64 3.09
4983 7153 7.141363 GGCTATTTGTGATAGCAACCATTTAG 58.859 38.462 17.01 0.00 46.47 1.85
4984 7154 6.040391 GGGCTATTTGTGATAGCAACCATTTA 59.960 38.462 17.01 0.00 46.47 1.40
4985 7155 5.163416 GGGCTATTTGTGATAGCAACCATTT 60.163 40.000 17.01 0.00 46.47 2.32
4986 7156 4.342092 GGGCTATTTGTGATAGCAACCATT 59.658 41.667 17.01 0.00 46.47 3.16
4987 7157 3.891366 GGGCTATTTGTGATAGCAACCAT 59.109 43.478 17.01 0.00 46.47 3.55
4988 7158 3.287222 GGGCTATTTGTGATAGCAACCA 58.713 45.455 17.01 0.00 46.47 3.67
4989 7159 2.290641 CGGGCTATTTGTGATAGCAACC 59.709 50.000 17.01 10.36 46.47 3.77
4990 7160 2.287009 GCGGGCTATTTGTGATAGCAAC 60.287 50.000 17.01 9.85 46.47 4.17
4991 7161 1.946768 GCGGGCTATTTGTGATAGCAA 59.053 47.619 17.01 0.00 46.47 3.91
4992 7162 1.140852 AGCGGGCTATTTGTGATAGCA 59.859 47.619 17.01 0.00 46.47 3.49
4993 7163 1.884235 AGCGGGCTATTTGTGATAGC 58.116 50.000 9.04 9.04 44.56 2.97
4994 7164 4.806247 GCTATAGCGGGCTATTTGTGATAG 59.194 45.833 17.49 8.76 39.65 2.08
4995 7165 4.755411 GCTATAGCGGGCTATTTGTGATA 58.245 43.478 17.49 0.00 39.65 2.15
4996 7166 3.600388 GCTATAGCGGGCTATTTGTGAT 58.400 45.455 17.49 0.00 39.65 3.06
4997 7167 3.040147 GCTATAGCGGGCTATTTGTGA 57.960 47.619 17.49 0.00 39.65 3.58
5010 7180 3.669536 GGGTCTCCAAATCAGCTATAGC 58.330 50.000 17.33 17.33 42.49 2.97
5011 7181 3.862642 GCGGGTCTCCAAATCAGCTATAG 60.863 52.174 0.00 0.00 0.00 1.31
5012 7182 2.037251 GCGGGTCTCCAAATCAGCTATA 59.963 50.000 0.00 0.00 0.00 1.31
5013 7183 1.202698 GCGGGTCTCCAAATCAGCTAT 60.203 52.381 0.00 0.00 0.00 2.97
5014 7184 0.178068 GCGGGTCTCCAAATCAGCTA 59.822 55.000 0.00 0.00 0.00 3.32
5015 7185 1.078143 GCGGGTCTCCAAATCAGCT 60.078 57.895 0.00 0.00 0.00 4.24
5016 7186 2.115291 GGCGGGTCTCCAAATCAGC 61.115 63.158 0.00 0.00 0.00 4.26
5017 7187 1.815421 CGGCGGGTCTCCAAATCAG 60.815 63.158 0.00 0.00 0.00 2.90
5018 7188 2.267642 CGGCGGGTCTCCAAATCA 59.732 61.111 0.00 0.00 0.00 2.57
5019 7189 2.306255 TAGCGGCGGGTCTCCAAATC 62.306 60.000 9.78 0.00 0.00 2.17
5020 7190 1.696097 ATAGCGGCGGGTCTCCAAAT 61.696 55.000 9.78 0.00 0.00 2.32
5021 7191 1.906105 AATAGCGGCGGGTCTCCAAA 61.906 55.000 9.78 0.00 0.00 3.28
5022 7192 1.906105 AAATAGCGGCGGGTCTCCAA 61.906 55.000 9.78 0.00 0.00 3.53
5023 7193 1.906105 AAAATAGCGGCGGGTCTCCA 61.906 55.000 9.78 0.00 0.00 3.86
5024 7194 1.153229 AAAATAGCGGCGGGTCTCC 60.153 57.895 9.78 0.00 0.00 3.71
5025 7195 1.158484 GGAAAATAGCGGCGGGTCTC 61.158 60.000 9.78 0.00 0.00 3.36
5026 7196 1.153229 GGAAAATAGCGGCGGGTCT 60.153 57.895 9.78 0.00 0.00 3.85
5027 7197 0.818040 ATGGAAAATAGCGGCGGGTC 60.818 55.000 9.78 0.00 0.00 4.46
5028 7198 0.470766 TATGGAAAATAGCGGCGGGT 59.529 50.000 9.78 0.47 0.00 5.28
5029 7199 1.156736 CTATGGAAAATAGCGGCGGG 58.843 55.000 9.78 0.00 0.00 6.13
5030 7200 0.517316 GCTATGGAAAATAGCGGCGG 59.483 55.000 9.78 0.00 37.79 6.13
5035 7205 5.613358 AATAGCGTGCTATGGAAAATAGC 57.387 39.130 14.68 9.84 45.28 2.97
5036 7206 9.944663 TTTTAAATAGCGTGCTATGGAAAATAG 57.055 29.630 14.68 0.00 39.03 1.73
5037 7207 9.724839 GTTTTAAATAGCGTGCTATGGAAAATA 57.275 29.630 23.18 10.49 39.03 1.40
5038 7208 8.247562 TGTTTTAAATAGCGTGCTATGGAAAAT 58.752 29.630 23.18 6.57 39.03 1.82
5039 7209 7.594714 TGTTTTAAATAGCGTGCTATGGAAAA 58.405 30.769 14.68 17.88 39.03 2.29
5040 7210 7.147143 TGTTTTAAATAGCGTGCTATGGAAA 57.853 32.000 14.68 13.89 39.03 3.13
5041 7211 6.745159 TGTTTTAAATAGCGTGCTATGGAA 57.255 33.333 14.68 9.27 39.03 3.53
5042 7212 6.935741 ATGTTTTAAATAGCGTGCTATGGA 57.064 33.333 14.68 3.86 39.03 3.41
5043 7213 6.417635 CCAATGTTTTAAATAGCGTGCTATGG 59.582 38.462 14.68 5.90 39.03 2.74
5044 7214 6.972328 ACCAATGTTTTAAATAGCGTGCTATG 59.028 34.615 14.68 0.73 39.03 2.23
5045 7215 7.095695 ACCAATGTTTTAAATAGCGTGCTAT 57.904 32.000 8.54 8.54 40.63 2.97
5046 7216 6.503589 ACCAATGTTTTAAATAGCGTGCTA 57.496 33.333 3.73 3.73 0.00 3.49
5047 7217 5.385509 ACCAATGTTTTAAATAGCGTGCT 57.614 34.783 0.00 0.00 0.00 4.40
5048 7218 6.460664 AAACCAATGTTTTAAATAGCGTGC 57.539 33.333 0.00 0.00 41.92 5.34
5068 7238 8.716646 AAATATTTAGCAGCATGGGTTAAAAC 57.283 30.769 0.00 0.00 35.86 2.43
5078 7248 6.907212 CGTCGAAAAGAAATATTTAGCAGCAT 59.093 34.615 0.00 0.00 0.00 3.79
5094 7265 4.326413 TGCATCTCATTTCGTCGAAAAG 57.674 40.909 23.11 18.88 35.11 2.27
5119 7290 0.248949 GGTCGCCGAATCTCACTACC 60.249 60.000 0.00 0.00 0.00 3.18
5175 7352 3.750130 CAGAAGTTCAGACCCAGACAATG 59.250 47.826 5.50 0.00 0.00 2.82
5176 7353 3.392616 ACAGAAGTTCAGACCCAGACAAT 59.607 43.478 5.50 0.00 0.00 2.71
5178 7355 2.398588 ACAGAAGTTCAGACCCAGACA 58.601 47.619 5.50 0.00 0.00 3.41
5308 7485 4.006780 TCAGTTTTAGCTGCATCAGTCA 57.993 40.909 1.02 0.00 36.49 3.41
5317 7494 4.494350 ACTGCAACATCAGTTTTAGCTG 57.506 40.909 0.00 0.00 44.26 4.24
5363 7599 7.490402 AGCGTATACCACATAAAACAGAGTAAC 59.510 37.037 0.00 0.00 0.00 2.50
5364 7600 7.549839 AGCGTATACCACATAAAACAGAGTAA 58.450 34.615 0.00 0.00 0.00 2.24
5365 7601 7.104043 AGCGTATACCACATAAAACAGAGTA 57.896 36.000 0.00 0.00 0.00 2.59
5366 7602 5.974108 AGCGTATACCACATAAAACAGAGT 58.026 37.500 0.00 0.00 0.00 3.24
5367 7603 7.167635 CACTAGCGTATACCACATAAAACAGAG 59.832 40.741 0.00 0.00 0.00 3.35
5368 7604 6.976349 CACTAGCGTATACCACATAAAACAGA 59.024 38.462 0.00 0.00 0.00 3.41
5369 7605 6.292168 GCACTAGCGTATACCACATAAAACAG 60.292 42.308 0.00 0.00 0.00 3.16
5370 7606 5.521010 GCACTAGCGTATACCACATAAAACA 59.479 40.000 0.00 0.00 0.00 2.83
5371 7607 5.970879 GCACTAGCGTATACCACATAAAAC 58.029 41.667 0.00 0.00 0.00 2.43
5395 7631 1.291877 AAATCTGCGCTCGTGGACAC 61.292 55.000 9.73 0.00 0.00 3.67
5396 7632 0.602638 AAAATCTGCGCTCGTGGACA 60.603 50.000 9.73 0.00 0.00 4.02
5397 7633 0.095417 GAAAATCTGCGCTCGTGGAC 59.905 55.000 9.73 0.00 0.00 4.02
5398 7634 0.037326 AGAAAATCTGCGCTCGTGGA 60.037 50.000 9.73 0.00 0.00 4.02
5399 7635 0.798776 AAGAAAATCTGCGCTCGTGG 59.201 50.000 9.73 0.00 0.00 4.94
5400 7636 1.195448 ACAAGAAAATCTGCGCTCGTG 59.805 47.619 9.73 7.72 0.00 4.35
5401 7637 1.512926 ACAAGAAAATCTGCGCTCGT 58.487 45.000 9.73 0.00 0.00 4.18
5402 7638 3.306973 TCATACAAGAAAATCTGCGCTCG 59.693 43.478 9.73 0.00 0.00 5.03
5403 7639 4.864916 TCATACAAGAAAATCTGCGCTC 57.135 40.909 9.73 0.00 0.00 5.03
5404 7640 5.575957 CAATCATACAAGAAAATCTGCGCT 58.424 37.500 9.73 0.00 0.00 5.92
5405 7641 4.205792 GCAATCATACAAGAAAATCTGCGC 59.794 41.667 0.00 0.00 0.00 6.09
5406 7642 5.334319 TGCAATCATACAAGAAAATCTGCG 58.666 37.500 0.00 0.00 0.00 5.18
5407 7643 6.558009 TCTGCAATCATACAAGAAAATCTGC 58.442 36.000 0.00 0.00 0.00 4.26
5408 7644 8.975410 TTTCTGCAATCATACAAGAAAATCTG 57.025 30.769 0.00 0.00 0.00 2.90
5409 7645 9.635520 CTTTTCTGCAATCATACAAGAAAATCT 57.364 29.630 8.77 0.00 34.64 2.40
5410 7646 9.415544 ACTTTTCTGCAATCATACAAGAAAATC 57.584 29.630 8.77 0.00 34.64 2.17
5411 7647 9.768662 AACTTTTCTGCAATCATACAAGAAAAT 57.231 25.926 8.77 0.00 34.64 1.82
5412 7648 9.598517 AAACTTTTCTGCAATCATACAAGAAAA 57.401 25.926 8.20 8.20 34.19 2.29
5417 7653 9.787532 GCTATAAACTTTTCTGCAATCATACAA 57.212 29.630 0.00 0.00 0.00 2.41
5418 7654 9.177608 AGCTATAAACTTTTCTGCAATCATACA 57.822 29.630 0.00 0.00 0.00 2.29
5419 7655 9.443283 CAGCTATAAACTTTTCTGCAATCATAC 57.557 33.333 0.00 0.00 0.00 2.39
5420 7656 8.623903 CCAGCTATAAACTTTTCTGCAATCATA 58.376 33.333 0.00 0.00 0.00 2.15
5421 7657 7.123247 ACCAGCTATAAACTTTTCTGCAATCAT 59.877 33.333 0.00 0.00 0.00 2.45
5422 7658 6.434028 ACCAGCTATAAACTTTTCTGCAATCA 59.566 34.615 0.00 0.00 0.00 2.57
5423 7659 6.856895 ACCAGCTATAAACTTTTCTGCAATC 58.143 36.000 0.00 0.00 0.00 2.67
5424 7660 6.434028 TGACCAGCTATAAACTTTTCTGCAAT 59.566 34.615 0.00 0.00 0.00 3.56
5425 7661 5.767665 TGACCAGCTATAAACTTTTCTGCAA 59.232 36.000 0.00 0.00 0.00 4.08
5426 7662 5.312895 TGACCAGCTATAAACTTTTCTGCA 58.687 37.500 0.00 0.00 0.00 4.41
5427 7663 5.880054 TGACCAGCTATAAACTTTTCTGC 57.120 39.130 0.00 0.00 0.00 4.26
5428 7664 7.875971 AGTTTGACCAGCTATAAACTTTTCTG 58.124 34.615 9.62 0.00 39.56 3.02
5429 7665 9.220767 CTAGTTTGACCAGCTATAAACTTTTCT 57.779 33.333 16.70 2.35 41.84 2.52
5430 7666 9.216117 TCTAGTTTGACCAGCTATAAACTTTTC 57.784 33.333 16.70 0.00 41.84 2.29
5431 7667 9.000486 GTCTAGTTTGACCAGCTATAAACTTTT 58.000 33.333 16.70 2.85 41.84 2.27
5432 7668 8.154856 TGTCTAGTTTGACCAGCTATAAACTTT 58.845 33.333 16.70 3.35 41.84 2.66
5433 7669 7.603024 GTGTCTAGTTTGACCAGCTATAAACTT 59.397 37.037 16.70 6.73 41.84 2.66
5434 7670 7.097834 GTGTCTAGTTTGACCAGCTATAAACT 58.902 38.462 16.10 16.10 43.48 2.66
5435 7671 6.872020 TGTGTCTAGTTTGACCAGCTATAAAC 59.128 38.462 0.00 0.00 36.21 2.01
5436 7672 6.999950 TGTGTCTAGTTTGACCAGCTATAAA 58.000 36.000 0.00 0.00 36.21 1.40
5437 7673 6.599356 TGTGTCTAGTTTGACCAGCTATAA 57.401 37.500 0.00 0.00 36.21 0.98
5438 7674 6.791867 ATGTGTCTAGTTTGACCAGCTATA 57.208 37.500 0.00 0.00 36.21 1.31
5439 7675 5.683876 ATGTGTCTAGTTTGACCAGCTAT 57.316 39.130 0.00 0.00 36.21 2.97
5440 7676 5.237815 CAATGTGTCTAGTTTGACCAGCTA 58.762 41.667 0.00 0.00 36.21 3.32
5441 7677 4.067896 CAATGTGTCTAGTTTGACCAGCT 58.932 43.478 0.00 0.00 36.21 4.24
5442 7678 3.189287 CCAATGTGTCTAGTTTGACCAGC 59.811 47.826 0.00 0.00 36.21 4.85
5443 7679 4.641396 TCCAATGTGTCTAGTTTGACCAG 58.359 43.478 0.00 0.00 36.21 4.00
5444 7680 4.698201 TCCAATGTGTCTAGTTTGACCA 57.302 40.909 0.00 0.00 36.21 4.02
5445 7681 6.575162 AAATCCAATGTGTCTAGTTTGACC 57.425 37.500 0.00 0.00 36.21 4.02
5481 7717 9.672086 CCAGAAAAGTGTCGTTATTTTTATTCA 57.328 29.630 0.00 0.00 0.00 2.57
5482 7718 9.673454 ACCAGAAAAGTGTCGTTATTTTTATTC 57.327 29.630 0.00 0.00 0.00 1.75
5483 7719 9.458374 CACCAGAAAAGTGTCGTTATTTTTATT 57.542 29.630 0.00 0.00 0.00 1.40
5484 7720 8.626526 ACACCAGAAAAGTGTCGTTATTTTTAT 58.373 29.630 0.00 0.00 45.13 1.40
5485 7721 7.987649 ACACCAGAAAAGTGTCGTTATTTTTA 58.012 30.769 0.00 0.00 45.13 1.52
5486 7722 6.859017 ACACCAGAAAAGTGTCGTTATTTTT 58.141 32.000 0.00 0.00 45.13 1.94
5487 7723 6.445357 ACACCAGAAAAGTGTCGTTATTTT 57.555 33.333 0.00 0.00 45.13 1.82
5497 7733 6.316390 GGGAGTATATCAACACCAGAAAAGTG 59.684 42.308 0.00 0.00 41.15 3.16
5498 7734 6.215636 AGGGAGTATATCAACACCAGAAAAGT 59.784 38.462 0.00 0.00 32.29 2.66
5499 7735 6.653989 AGGGAGTATATCAACACCAGAAAAG 58.346 40.000 0.00 0.00 32.29 2.27
5500 7736 6.443849 AGAGGGAGTATATCAACACCAGAAAA 59.556 38.462 0.00 0.00 32.29 2.29
5501 7737 5.964477 AGAGGGAGTATATCAACACCAGAAA 59.036 40.000 0.00 0.00 32.29 2.52
5502 7738 5.363868 CAGAGGGAGTATATCAACACCAGAA 59.636 44.000 0.00 0.00 32.29 3.02
5503 7739 4.895889 CAGAGGGAGTATATCAACACCAGA 59.104 45.833 0.00 0.00 32.29 3.86
5504 7740 4.651503 ACAGAGGGAGTATATCAACACCAG 59.348 45.833 0.00 0.00 32.29 4.00
5505 7741 4.620723 ACAGAGGGAGTATATCAACACCA 58.379 43.478 0.00 0.00 32.29 4.17
5506 7742 5.364157 AGAACAGAGGGAGTATATCAACACC 59.636 44.000 0.00 0.00 0.00 4.16
5507 7743 6.472686 AGAACAGAGGGAGTATATCAACAC 57.527 41.667 0.00 0.00 0.00 3.32
5508 7744 8.603898 TTAAGAACAGAGGGAGTATATCAACA 57.396 34.615 0.00 0.00 0.00 3.33
5517 7753 9.588096 AAACAAATATTTAAGAACAGAGGGAGT 57.412 29.630 0.00 0.00 0.00 3.85
5544 7780 9.607988 TGTAGTCACTTGTTGAAATTTCTAGAA 57.392 29.630 18.64 14.37 35.39 2.10
5545 7781 9.778741 ATGTAGTCACTTGTTGAAATTTCTAGA 57.221 29.630 18.64 7.52 35.39 2.43
5546 7782 9.817365 CATGTAGTCACTTGTTGAAATTTCTAG 57.183 33.333 18.64 12.38 35.39 2.43
5547 7783 8.289618 GCATGTAGTCACTTGTTGAAATTTCTA 58.710 33.333 18.64 8.95 35.39 2.10
5548 7784 7.141363 GCATGTAGTCACTTGTTGAAATTTCT 58.859 34.615 18.64 0.00 35.39 2.52
5549 7785 6.086765 CGCATGTAGTCACTTGTTGAAATTTC 59.913 38.462 11.41 11.41 35.39 2.17
5550 7786 5.914635 CGCATGTAGTCACTTGTTGAAATTT 59.085 36.000 0.00 0.00 35.39 1.82
5551 7787 5.451908 CGCATGTAGTCACTTGTTGAAATT 58.548 37.500 0.00 0.00 35.39 1.82
5552 7788 4.083324 CCGCATGTAGTCACTTGTTGAAAT 60.083 41.667 0.00 0.00 35.39 2.17
5553 7789 3.249799 CCGCATGTAGTCACTTGTTGAAA 59.750 43.478 0.00 0.00 35.39 2.69
5554 7790 2.805671 CCGCATGTAGTCACTTGTTGAA 59.194 45.455 0.00 0.00 35.39 2.69
5555 7791 2.036604 TCCGCATGTAGTCACTTGTTGA 59.963 45.455 0.00 0.00 33.46 3.18
5556 7792 2.412870 TCCGCATGTAGTCACTTGTTG 58.587 47.619 0.00 0.00 33.46 3.33
5557 7793 2.688507 CTCCGCATGTAGTCACTTGTT 58.311 47.619 0.00 0.00 33.46 2.83
5558 7794 1.673033 GCTCCGCATGTAGTCACTTGT 60.673 52.381 0.00 0.00 33.46 3.16
5559 7795 1.002366 GCTCCGCATGTAGTCACTTG 58.998 55.000 0.00 0.00 33.92 3.16
5560 7796 0.608130 TGCTCCGCATGTAGTCACTT 59.392 50.000 0.00 0.00 31.71 3.16
5561 7797 0.608130 TTGCTCCGCATGTAGTCACT 59.392 50.000 0.00 0.00 38.76 3.41
5562 7798 1.438651 TTTGCTCCGCATGTAGTCAC 58.561 50.000 0.00 0.00 38.76 3.67
5563 7799 2.177394 TTTTGCTCCGCATGTAGTCA 57.823 45.000 0.00 0.00 38.76 3.41
5564 7800 2.677836 TCATTTTGCTCCGCATGTAGTC 59.322 45.455 0.00 0.00 38.76 2.59
5565 7801 2.710377 TCATTTTGCTCCGCATGTAGT 58.290 42.857 0.00 0.00 38.76 2.73
5566 7802 3.763097 TTCATTTTGCTCCGCATGTAG 57.237 42.857 0.00 0.00 38.76 2.74
5567 7803 3.693578 TCATTCATTTTGCTCCGCATGTA 59.306 39.130 0.00 0.00 38.76 2.29
5568 7804 2.492881 TCATTCATTTTGCTCCGCATGT 59.507 40.909 0.00 0.00 38.76 3.21
5569 7805 3.113322 CTCATTCATTTTGCTCCGCATG 58.887 45.455 0.00 0.00 38.76 4.06
5570 7806 2.756760 ACTCATTCATTTTGCTCCGCAT 59.243 40.909 0.00 0.00 38.76 4.73
5571 7807 2.161855 ACTCATTCATTTTGCTCCGCA 58.838 42.857 0.00 0.00 36.47 5.69
5572 7808 2.421424 AGACTCATTCATTTTGCTCCGC 59.579 45.455 0.00 0.00 0.00 5.54
5573 7809 4.631377 TGTAGACTCATTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
5574 7810 5.645497 AGTGTAGACTCATTCATTTTGCTCC 59.355 40.000 0.00 0.00 0.00 4.70
5575 7811 6.734104 AGTGTAGACTCATTCATTTTGCTC 57.266 37.500 0.00 0.00 0.00 4.26
5576 7812 7.516198 AAAGTGTAGACTCATTCATTTTGCT 57.484 32.000 0.00 0.00 0.00 3.91
5577 7813 9.677567 TTTAAAGTGTAGACTCATTCATTTTGC 57.322 29.630 0.00 0.00 0.00 3.68
5603 7839 9.901172 TCACATACGGATGTATATAGACATAGT 57.099 33.333 14.23 16.46 44.82 2.12
5607 7843 9.901172 ACTATCACATACGGATGTATATAGACA 57.099 33.333 30.73 11.02 44.82 3.41
5609 7845 9.557061 GGACTATCACATACGGATGTATATAGA 57.443 37.037 30.73 19.35 44.82 1.98
5610 7846 9.338622 TGGACTATCACATACGGATGTATATAG 57.661 37.037 26.27 26.27 44.82 1.31
5611 7847 9.862149 ATGGACTATCACATACGGATGTATATA 57.138 33.333 14.23 12.96 44.82 0.86
5612 7848 8.768501 ATGGACTATCACATACGGATGTATAT 57.231 34.615 14.23 12.50 44.82 0.86
5613 7849 8.589701 AATGGACTATCACATACGGATGTATA 57.410 34.615 14.23 10.59 44.82 1.47
5614 7850 7.482169 AATGGACTATCACATACGGATGTAT 57.518 36.000 14.23 10.02 44.82 2.29
5615 7851 6.911250 AATGGACTATCACATACGGATGTA 57.089 37.500 14.23 2.61 44.82 2.29
5617 7853 6.223120 TCAAATGGACTATCACATACGGATG 58.777 40.000 5.94 5.94 39.16 3.51
5618 7854 6.419484 TCAAATGGACTATCACATACGGAT 57.581 37.500 0.00 0.00 0.00 4.18
5619 7855 5.862678 TCAAATGGACTATCACATACGGA 57.137 39.130 0.00 0.00 0.00 4.69
5620 7856 6.918892 TTTCAAATGGACTATCACATACGG 57.081 37.500 0.00 0.00 0.00 4.02
5621 7857 8.370493 AGATTTCAAATGGACTATCACATACG 57.630 34.615 0.00 0.00 0.00 3.06
5622 7858 9.553064 AGAGATTTCAAATGGACTATCACATAC 57.447 33.333 0.00 0.00 0.00 2.39
5625 7861 9.958180 TTTAGAGATTTCAAATGGACTATCACA 57.042 29.630 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.