Multiple sequence alignment - TraesCS3D01G473500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G473500 chr3D 100.000 2713 0 0 1 2713 574982916 574985628 0.000000e+00 5011.0
1 TraesCS3D01G473500 chr3D 88.587 184 14 3 2134 2310 7970654 7970471 1.640000e-52 217.0
2 TraesCS3D01G473500 chr3B 92.908 1819 103 15 321 2134 764890041 764888244 0.000000e+00 2621.0
3 TraesCS3D01G473500 chr3B 85.980 1562 163 31 574 2103 764807422 764805885 0.000000e+00 1620.0
4 TraesCS3D01G473500 chr3B 82.620 1519 196 37 505 1984 764851489 764850000 0.000000e+00 1280.0
5 TraesCS3D01G473500 chr3B 92.822 404 28 1 2310 2713 764888252 764887850 3.890000e-163 584.0
6 TraesCS3D01G473500 chr3B 76.244 1166 187 49 973 2080 764793147 764792014 1.110000e-148 536.0
7 TraesCS3D01G473500 chr3B 96.633 297 10 0 25 321 478517298 478517594 6.750000e-136 494.0
8 TraesCS3D01G473500 chr3B 91.753 194 11 3 386 574 764815995 764815802 5.760000e-67 265.0
9 TraesCS3D01G473500 chr3B 73.379 293 48 22 2429 2713 571808560 571808290 6.230000e-12 82.4
10 TraesCS3D01G473500 chr3B 100.000 32 0 0 449 480 764851493 764851524 2.920000e-05 60.2
11 TraesCS3D01G473500 chr3B 100.000 30 0 0 330 359 764824288 764824317 3.770000e-04 56.5
12 TraesCS3D01G473500 chr2B 96.970 297 9 0 25 321 603169188 603169484 1.450000e-137 499.0
13 TraesCS3D01G473500 chr2B 89.385 179 16 3 2135 2310 708438546 708438368 3.520000e-54 222.0
14 TraesCS3D01G473500 chr2B 79.842 253 41 5 2462 2712 45530395 45530151 2.780000e-40 176.0
15 TraesCS3D01G473500 chr2B 80.469 128 23 2 983 1109 762355308 762355434 2.220000e-16 97.1
16 TraesCS3D01G473500 chr6B 95.779 308 11 2 16 321 538067731 538068038 1.880000e-136 496.0
17 TraesCS3D01G473500 chr6B 96.321 299 11 0 22 320 678624825 678625123 2.430000e-135 492.0
18 TraesCS3D01G473500 chr6B 84.337 83 7 5 2622 2702 5889661 5889739 2.900000e-10 76.8
19 TraesCS3D01G473500 chr6B 84.337 83 7 5 2622 2702 5893742 5893820 2.900000e-10 76.8
20 TraesCS3D01G473500 chr7D 96.633 297 10 0 25 321 479117438 479117734 6.750000e-136 494.0
21 TraesCS3D01G473500 chr7D 86.408 206 12 10 2127 2322 574065512 574065711 7.610000e-51 211.0
22 TraesCS3D01G473500 chr7B 95.752 306 12 1 17 321 29237707 29238012 2.430000e-135 492.0
23 TraesCS3D01G473500 chr7B 95.724 304 12 1 18 321 483393039 483392737 3.140000e-134 488.0
24 TraesCS3D01G473500 chr7B 94.569 313 15 2 10 320 527368304 527368616 1.460000e-132 483.0
25 TraesCS3D01G473500 chr2D 96.622 296 10 0 25 320 555068299 555068004 2.430000e-135 492.0
26 TraesCS3D01G473500 chr2D 89.444 180 15 2 2135 2310 55555426 55555605 9.780000e-55 224.0
27 TraesCS3D01G473500 chr2D 82.143 140 19 6 973 1109 621461433 621461569 6.140000e-22 115.0
28 TraesCS3D01G473500 chrUn 76.558 947 149 37 950 1869 33303907 33303007 4.120000e-123 451.0
29 TraesCS3D01G473500 chrUn 89.503 181 15 2 2133 2309 29985178 29985358 2.720000e-55 226.0
30 TraesCS3D01G473500 chr3A 76.558 947 149 37 950 1869 710678739 710677839 4.120000e-123 451.0
31 TraesCS3D01G473500 chr5A 89.730 185 14 4 2131 2310 101083270 101083454 5.840000e-57 231.0
32 TraesCS3D01G473500 chr5A 86.139 202 19 9 2131 2325 602653723 602653524 2.740000e-50 209.0
33 TraesCS3D01G473500 chr1D 89.444 180 15 2 2135 2310 422536585 422536406 9.780000e-55 224.0
34 TraesCS3D01G473500 chr4B 88.398 181 16 4 2135 2310 248713788 248713968 2.120000e-51 213.0
35 TraesCS3D01G473500 chr4B 80.569 211 33 6 2505 2712 648550369 648550574 3.620000e-34 156.0
36 TraesCS3D01G473500 chr2A 79.592 245 40 7 2468 2709 48349836 48349599 1.670000e-37 167.0
37 TraesCS3D01G473500 chr2A 78.261 138 28 2 973 1109 753204111 753204247 1.340000e-13 87.9
38 TraesCS3D01G473500 chr2A 84.337 83 7 5 2622 2702 508447472 508447550 2.900000e-10 76.8
39 TraesCS3D01G473500 chr5D 80.420 143 23 3 2536 2677 36484422 36484560 1.330000e-18 104.0
40 TraesCS3D01G473500 chr7A 97.059 34 0 1 2580 2612 122766956 122766923 3.770000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G473500 chr3D 574982916 574985628 2712 False 5011.0 5011 100.000 1 2713 1 chr3D.!!$F1 2712
1 TraesCS3D01G473500 chr3B 764805885 764807422 1537 True 1620.0 1620 85.980 574 2103 1 chr3B.!!$R3 1529
2 TraesCS3D01G473500 chr3B 764887850 764890041 2191 True 1602.5 2621 92.865 321 2713 2 chr3B.!!$R6 2392
3 TraesCS3D01G473500 chr3B 764850000 764851489 1489 True 1280.0 1280 82.620 505 1984 1 chr3B.!!$R5 1479
4 TraesCS3D01G473500 chr3B 764792014 764793147 1133 True 536.0 536 76.244 973 2080 1 chr3B.!!$R2 1107
5 TraesCS3D01G473500 chrUn 33303007 33303907 900 True 451.0 451 76.558 950 1869 1 chrUn.!!$R1 919
6 TraesCS3D01G473500 chr3A 710677839 710678739 900 True 451.0 451 76.558 950 1869 1 chr3A.!!$R1 919

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
262 263 0.027586 GTTAATGCACCGCGCCTTAG 59.972 55.0 0.0 0.0 41.33 2.18 F
269 270 0.385473 CACCGCGCCTTAGTGTTTTG 60.385 55.0 0.0 0.0 0.00 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1457 1526 0.103208 CCTCTAGGTAGCACTTGCCG 59.897 60.0 0.0 0.0 43.38 5.69 R
2052 2170 0.177836 TATGCTGGTGACATCCGTGG 59.822 55.0 0.0 0.0 41.51 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 8.664211 ATCAATCTTCGAAAAGTAATACTCCC 57.336 34.615 0.00 0.00 33.95 4.30
31 32 7.848128 TCAATCTTCGAAAAGTAATACTCCCT 58.152 34.615 0.00 0.00 33.95 4.20
32 33 7.980099 TCAATCTTCGAAAAGTAATACTCCCTC 59.020 37.037 0.00 0.00 33.95 4.30
33 34 6.218108 TCTTCGAAAAGTAATACTCCCTCC 57.782 41.667 0.00 0.00 33.95 4.30
34 35 4.644103 TCGAAAAGTAATACTCCCTCCG 57.356 45.455 0.00 0.00 0.00 4.63
35 36 4.019174 TCGAAAAGTAATACTCCCTCCGT 58.981 43.478 0.00 0.00 0.00 4.69
36 37 4.096984 TCGAAAAGTAATACTCCCTCCGTC 59.903 45.833 0.00 0.00 0.00 4.79
37 38 4.097589 CGAAAAGTAATACTCCCTCCGTCT 59.902 45.833 0.00 0.00 0.00 4.18
38 39 5.297776 CGAAAAGTAATACTCCCTCCGTCTA 59.702 44.000 0.00 0.00 0.00 2.59
39 40 6.513066 CGAAAAGTAATACTCCCTCCGTCTAG 60.513 46.154 0.00 0.00 0.00 2.43
40 41 4.370094 AGTAATACTCCCTCCGTCTAGG 57.630 50.000 0.00 0.00 42.97 3.02
41 42 3.721050 AGTAATACTCCCTCCGTCTAGGT 59.279 47.826 0.00 0.00 41.99 3.08
42 43 2.660670 ATACTCCCTCCGTCTAGGTG 57.339 55.000 0.00 0.00 41.99 4.00
43 44 1.588239 TACTCCCTCCGTCTAGGTGA 58.412 55.000 0.00 0.00 41.99 4.02
44 45 0.256464 ACTCCCTCCGTCTAGGTGAG 59.744 60.000 0.00 0.00 41.99 3.51
45 46 0.256464 CTCCCTCCGTCTAGGTGAGT 59.744 60.000 0.00 0.00 41.99 3.41
46 47 1.489649 CTCCCTCCGTCTAGGTGAGTA 59.510 57.143 0.00 0.00 41.99 2.59
47 48 1.918262 TCCCTCCGTCTAGGTGAGTAA 59.082 52.381 0.00 0.00 41.99 2.24
48 49 2.092538 TCCCTCCGTCTAGGTGAGTAAG 60.093 54.545 0.00 0.00 41.99 2.34
49 50 2.356947 CCCTCCGTCTAGGTGAGTAAGT 60.357 54.545 0.00 0.00 41.99 2.24
50 51 2.944349 CCTCCGTCTAGGTGAGTAAGTC 59.056 54.545 0.00 0.00 41.99 3.01
51 52 3.607741 CTCCGTCTAGGTGAGTAAGTCA 58.392 50.000 0.00 0.00 41.99 3.41
52 53 4.200874 CTCCGTCTAGGTGAGTAAGTCAT 58.799 47.826 0.00 0.00 41.99 3.06
53 54 4.197750 TCCGTCTAGGTGAGTAAGTCATC 58.802 47.826 0.00 0.00 41.99 2.92
55 56 4.641094 CCGTCTAGGTGAGTAAGTCATCTT 59.359 45.833 0.00 0.00 45.09 2.40
56 57 5.821470 CCGTCTAGGTGAGTAAGTCATCTTA 59.179 44.000 0.00 0.00 45.09 2.10
57 58 6.017770 CCGTCTAGGTGAGTAAGTCATCTTAG 60.018 46.154 0.00 0.00 45.09 2.18
58 59 6.017770 CGTCTAGGTGAGTAAGTCATCTTAGG 60.018 46.154 0.00 0.00 45.09 2.69
59 60 6.829811 GTCTAGGTGAGTAAGTCATCTTAGGT 59.170 42.308 0.00 0.00 45.09 3.08
60 61 7.339976 GTCTAGGTGAGTAAGTCATCTTAGGTT 59.660 40.741 0.00 0.00 45.09 3.50
61 62 6.287589 AGGTGAGTAAGTCATCTTAGGTTG 57.712 41.667 0.00 0.00 45.09 3.77
62 63 5.780793 AGGTGAGTAAGTCATCTTAGGTTGT 59.219 40.000 0.00 0.00 45.09 3.32
63 64 5.869888 GGTGAGTAAGTCATCTTAGGTTGTG 59.130 44.000 0.00 0.00 37.56 3.33
64 65 5.348997 GTGAGTAAGTCATCTTAGGTTGTGC 59.651 44.000 0.00 0.00 37.56 4.57
65 66 5.011635 TGAGTAAGTCATCTTAGGTTGTGCA 59.988 40.000 0.00 0.00 36.90 4.57
66 67 5.238583 AGTAAGTCATCTTAGGTTGTGCAC 58.761 41.667 10.75 10.75 36.90 4.57
67 68 4.392138 GTAAGTCATCTTAGGTTGTGCACC 59.608 45.833 15.69 0.00 39.22 5.01
68 69 4.858007 TAAGTCATCTTAGGTTGTGCACCG 60.858 45.833 15.69 0.00 41.54 4.94
69 70 7.249927 TAAGTCATCTTAGGTTGTGCACCGT 62.250 44.000 15.69 3.89 41.54 4.83
74 75 2.515057 GGTTGTGCACCGTGACCA 60.515 61.111 15.69 0.00 35.12 4.02
75 76 2.115911 GGTTGTGCACCGTGACCAA 61.116 57.895 15.69 1.00 35.12 3.67
76 77 1.355210 GTTGTGCACCGTGACCAAG 59.645 57.895 15.69 0.00 0.00 3.61
77 78 1.821759 TTGTGCACCGTGACCAAGG 60.822 57.895 15.69 0.44 35.99 3.61
78 79 2.110213 GTGCACCGTGACCAAGGA 59.890 61.111 5.22 0.00 33.97 3.36
79 80 1.961277 GTGCACCGTGACCAAGGAG 60.961 63.158 5.22 2.30 33.97 3.69
80 81 2.137528 TGCACCGTGACCAAGGAGA 61.138 57.895 8.91 0.00 33.97 3.71
81 82 1.070786 GCACCGTGACCAAGGAGAA 59.929 57.895 8.91 0.00 33.97 2.87
82 83 0.951040 GCACCGTGACCAAGGAGAAG 60.951 60.000 8.91 0.00 33.97 2.85
83 84 0.320771 CACCGTGACCAAGGAGAAGG 60.321 60.000 8.91 0.00 33.97 3.46
84 85 0.471211 ACCGTGACCAAGGAGAAGGA 60.471 55.000 8.91 0.00 33.97 3.36
85 86 0.247736 CCGTGACCAAGGAGAAGGAG 59.752 60.000 0.00 0.00 31.21 3.69
86 87 1.257743 CGTGACCAAGGAGAAGGAGA 58.742 55.000 0.00 0.00 0.00 3.71
87 88 1.618837 CGTGACCAAGGAGAAGGAGAA 59.381 52.381 0.00 0.00 0.00 2.87
88 89 2.037251 CGTGACCAAGGAGAAGGAGAAA 59.963 50.000 0.00 0.00 0.00 2.52
89 90 3.494398 CGTGACCAAGGAGAAGGAGAAAA 60.494 47.826 0.00 0.00 0.00 2.29
90 91 3.815962 GTGACCAAGGAGAAGGAGAAAAC 59.184 47.826 0.00 0.00 0.00 2.43
91 92 3.067833 GACCAAGGAGAAGGAGAAAACG 58.932 50.000 0.00 0.00 0.00 3.60
92 93 2.704065 ACCAAGGAGAAGGAGAAAACGA 59.296 45.455 0.00 0.00 0.00 3.85
93 94 3.244249 ACCAAGGAGAAGGAGAAAACGAG 60.244 47.826 0.00 0.00 0.00 4.18
94 95 3.006967 CCAAGGAGAAGGAGAAAACGAGA 59.993 47.826 0.00 0.00 0.00 4.04
95 96 4.503296 CCAAGGAGAAGGAGAAAACGAGAA 60.503 45.833 0.00 0.00 0.00 2.87
96 97 4.957684 AGGAGAAGGAGAAAACGAGAAA 57.042 40.909 0.00 0.00 0.00 2.52
97 98 5.491323 AGGAGAAGGAGAAAACGAGAAAT 57.509 39.130 0.00 0.00 0.00 2.17
98 99 5.483811 AGGAGAAGGAGAAAACGAGAAATC 58.516 41.667 0.00 0.00 0.00 2.17
99 100 5.247337 AGGAGAAGGAGAAAACGAGAAATCT 59.753 40.000 0.00 0.00 0.00 2.40
100 101 5.935206 GGAGAAGGAGAAAACGAGAAATCTT 59.065 40.000 0.00 0.00 0.00 2.40
101 102 7.038941 AGGAGAAGGAGAAAACGAGAAATCTTA 60.039 37.037 0.00 0.00 0.00 2.10
102 103 7.603024 GGAGAAGGAGAAAACGAGAAATCTTAA 59.397 37.037 0.00 0.00 0.00 1.85
103 104 9.157104 GAGAAGGAGAAAACGAGAAATCTTAAT 57.843 33.333 0.00 0.00 0.00 1.40
104 105 8.940952 AGAAGGAGAAAACGAGAAATCTTAATG 58.059 33.333 0.00 0.00 0.00 1.90
105 106 8.622948 AAGGAGAAAACGAGAAATCTTAATGT 57.377 30.769 0.00 0.00 0.00 2.71
106 107 8.622948 AGGAGAAAACGAGAAATCTTAATGTT 57.377 30.769 0.00 0.00 0.00 2.71
107 108 9.067986 AGGAGAAAACGAGAAATCTTAATGTTT 57.932 29.630 0.00 0.00 0.00 2.83
150 151 3.855689 ATGCAATGAACTAACCACTGC 57.144 42.857 0.00 0.00 0.00 4.40
151 152 2.580962 TGCAATGAACTAACCACTGCA 58.419 42.857 0.00 0.00 36.06 4.41
152 153 3.156293 TGCAATGAACTAACCACTGCAT 58.844 40.909 0.00 0.00 33.65 3.96
153 154 3.057386 TGCAATGAACTAACCACTGCATG 60.057 43.478 0.00 0.00 33.65 4.06
154 155 3.057315 GCAATGAACTAACCACTGCATGT 60.057 43.478 0.00 0.00 0.00 3.21
155 156 4.726416 CAATGAACTAACCACTGCATGTC 58.274 43.478 0.00 0.00 0.00 3.06
156 157 2.412870 TGAACTAACCACTGCATGTCG 58.587 47.619 0.00 0.00 0.00 4.35
157 158 2.224185 TGAACTAACCACTGCATGTCGT 60.224 45.455 0.00 0.00 0.00 4.34
158 159 1.795768 ACTAACCACTGCATGTCGTG 58.204 50.000 8.87 8.87 0.00 4.35
159 160 1.070134 ACTAACCACTGCATGTCGTGT 59.930 47.619 13.12 2.00 0.00 4.49
160 161 2.143122 CTAACCACTGCATGTCGTGTT 58.857 47.619 13.12 10.39 0.00 3.32
161 162 1.388547 AACCACTGCATGTCGTGTTT 58.611 45.000 13.12 5.09 0.00 2.83
162 163 0.662619 ACCACTGCATGTCGTGTTTG 59.337 50.000 13.12 3.87 0.00 2.93
163 164 0.040157 CCACTGCATGTCGTGTTTGG 60.040 55.000 13.12 0.00 0.00 3.28
164 165 0.662619 CACTGCATGTCGTGTTTGGT 59.337 50.000 7.95 0.00 0.00 3.67
165 166 1.870402 CACTGCATGTCGTGTTTGGTA 59.130 47.619 7.95 0.00 0.00 3.25
166 167 2.096268 CACTGCATGTCGTGTTTGGTAG 60.096 50.000 7.95 0.00 0.00 3.18
167 168 2.143122 CTGCATGTCGTGTTTGGTAGT 58.857 47.619 0.00 0.00 0.00 2.73
168 169 2.139917 TGCATGTCGTGTTTGGTAGTC 58.860 47.619 0.00 0.00 0.00 2.59
169 170 2.224185 TGCATGTCGTGTTTGGTAGTCT 60.224 45.455 0.00 0.00 0.00 3.24
170 171 2.412089 GCATGTCGTGTTTGGTAGTCTC 59.588 50.000 0.00 0.00 0.00 3.36
171 172 3.649073 CATGTCGTGTTTGGTAGTCTCA 58.351 45.455 0.00 0.00 0.00 3.27
172 173 3.804786 TGTCGTGTTTGGTAGTCTCAA 57.195 42.857 0.00 0.00 0.00 3.02
173 174 3.713288 TGTCGTGTTTGGTAGTCTCAAG 58.287 45.455 0.00 0.00 0.00 3.02
174 175 3.131577 TGTCGTGTTTGGTAGTCTCAAGT 59.868 43.478 0.00 0.00 0.00 3.16
175 176 4.117685 GTCGTGTTTGGTAGTCTCAAGTT 58.882 43.478 0.00 0.00 0.00 2.66
176 177 5.163530 TGTCGTGTTTGGTAGTCTCAAGTTA 60.164 40.000 0.00 0.00 0.00 2.24
177 178 5.924825 GTCGTGTTTGGTAGTCTCAAGTTAT 59.075 40.000 0.00 0.00 0.00 1.89
178 179 6.423001 GTCGTGTTTGGTAGTCTCAAGTTATT 59.577 38.462 0.00 0.00 0.00 1.40
179 180 7.596248 GTCGTGTTTGGTAGTCTCAAGTTATTA 59.404 37.037 0.00 0.00 0.00 0.98
180 181 8.143193 TCGTGTTTGGTAGTCTCAAGTTATTAA 58.857 33.333 0.00 0.00 0.00 1.40
181 182 8.767085 CGTGTTTGGTAGTCTCAAGTTATTAAA 58.233 33.333 0.00 0.00 0.00 1.52
184 185 9.608617 GTTTGGTAGTCTCAAGTTATTAAAAGC 57.391 33.333 0.00 0.00 0.00 3.51
185 186 8.911918 TTGGTAGTCTCAAGTTATTAAAAGCA 57.088 30.769 0.00 0.00 0.00 3.91
186 187 9.515226 TTGGTAGTCTCAAGTTATTAAAAGCAT 57.485 29.630 0.00 0.00 0.00 3.79
187 188 8.946085 TGGTAGTCTCAAGTTATTAAAAGCATG 58.054 33.333 0.00 0.00 0.00 4.06
188 189 7.910683 GGTAGTCTCAAGTTATTAAAAGCATGC 59.089 37.037 10.51 10.51 0.00 4.06
189 190 7.452880 AGTCTCAAGTTATTAAAAGCATGCA 57.547 32.000 21.98 0.00 0.00 3.96
190 191 7.308435 AGTCTCAAGTTATTAAAAGCATGCAC 58.692 34.615 21.98 6.43 0.00 4.57
191 192 7.040478 AGTCTCAAGTTATTAAAAGCATGCACA 60.040 33.333 21.98 0.00 0.00 4.57
192 193 7.061094 GTCTCAAGTTATTAAAAGCATGCACAC 59.939 37.037 21.98 4.15 0.00 3.82
193 194 6.155827 TCAAGTTATTAAAAGCATGCACACC 58.844 36.000 21.98 0.00 0.00 4.16
194 195 5.072040 AGTTATTAAAAGCATGCACACCC 57.928 39.130 21.98 0.00 0.00 4.61
195 196 4.081697 AGTTATTAAAAGCATGCACACCCC 60.082 41.667 21.98 0.00 0.00 4.95
196 197 2.008242 TTAAAAGCATGCACACCCCT 57.992 45.000 21.98 0.00 0.00 4.79
197 198 1.544724 TAAAAGCATGCACACCCCTC 58.455 50.000 21.98 0.00 0.00 4.30
198 199 0.469705 AAAAGCATGCACACCCCTCA 60.470 50.000 21.98 0.00 0.00 3.86
199 200 0.251922 AAAGCATGCACACCCCTCAT 60.252 50.000 21.98 0.00 0.00 2.90
200 201 0.682209 AAGCATGCACACCCCTCATC 60.682 55.000 21.98 0.00 0.00 2.92
201 202 1.077212 GCATGCACACCCCTCATCT 60.077 57.895 14.21 0.00 0.00 2.90
202 203 1.099879 GCATGCACACCCCTCATCTC 61.100 60.000 14.21 0.00 0.00 2.75
203 204 0.545171 CATGCACACCCCTCATCTCT 59.455 55.000 0.00 0.00 0.00 3.10
204 205 1.064906 CATGCACACCCCTCATCTCTT 60.065 52.381 0.00 0.00 0.00 2.85
205 206 1.951209 TGCACACCCCTCATCTCTTA 58.049 50.000 0.00 0.00 0.00 2.10
206 207 2.481441 TGCACACCCCTCATCTCTTAT 58.519 47.619 0.00 0.00 0.00 1.73
207 208 2.846206 TGCACACCCCTCATCTCTTATT 59.154 45.455 0.00 0.00 0.00 1.40
208 209 3.209410 GCACACCCCTCATCTCTTATTG 58.791 50.000 0.00 0.00 0.00 1.90
209 210 3.813443 CACACCCCTCATCTCTTATTGG 58.187 50.000 0.00 0.00 0.00 3.16
210 211 3.200825 CACACCCCTCATCTCTTATTGGT 59.799 47.826 0.00 0.00 0.00 3.67
211 212 3.852578 ACACCCCTCATCTCTTATTGGTT 59.147 43.478 0.00 0.00 0.00 3.67
212 213 4.202441 CACCCCTCATCTCTTATTGGTTG 58.798 47.826 0.00 0.00 0.00 3.77
213 214 4.080356 CACCCCTCATCTCTTATTGGTTGA 60.080 45.833 0.00 0.00 0.00 3.18
214 215 4.728860 ACCCCTCATCTCTTATTGGTTGAT 59.271 41.667 0.00 0.00 0.00 2.57
215 216 5.911178 ACCCCTCATCTCTTATTGGTTGATA 59.089 40.000 0.00 0.00 0.00 2.15
216 217 6.564152 ACCCCTCATCTCTTATTGGTTGATAT 59.436 38.462 0.00 0.00 0.00 1.63
217 218 6.883217 CCCCTCATCTCTTATTGGTTGATATG 59.117 42.308 0.00 0.00 0.00 1.78
218 219 7.456725 CCCTCATCTCTTATTGGTTGATATGT 58.543 38.462 0.00 0.00 0.00 2.29
219 220 7.605691 CCCTCATCTCTTATTGGTTGATATGTC 59.394 40.741 0.00 0.00 0.00 3.06
220 221 8.152898 CCTCATCTCTTATTGGTTGATATGTCA 58.847 37.037 0.00 0.00 0.00 3.58
221 222 9.551734 CTCATCTCTTATTGGTTGATATGTCAA 57.448 33.333 0.03 0.03 41.89 3.18
222 223 9.551734 TCATCTCTTATTGGTTGATATGTCAAG 57.448 33.333 4.98 0.00 44.58 3.02
223 224 9.551734 CATCTCTTATTGGTTGATATGTCAAGA 57.448 33.333 4.98 0.00 44.58 3.02
225 226 9.958180 TCTCTTATTGGTTGATATGTCAAGAAA 57.042 29.630 4.98 3.84 44.58 2.52
226 227 9.994432 CTCTTATTGGTTGATATGTCAAGAAAC 57.006 33.333 4.98 0.00 44.58 2.78
227 228 9.513906 TCTTATTGGTTGATATGTCAAGAAACA 57.486 29.630 4.98 0.63 44.58 2.83
230 231 7.815840 TTGGTTGATATGTCAAGAAACAAGA 57.184 32.000 4.98 0.00 44.58 3.02
231 232 7.815840 TGGTTGATATGTCAAGAAACAAGAA 57.184 32.000 4.98 0.00 44.58 2.52
232 233 8.231692 TGGTTGATATGTCAAGAAACAAGAAA 57.768 30.769 4.98 0.00 44.58 2.52
233 234 8.134895 TGGTTGATATGTCAAGAAACAAGAAAC 58.865 33.333 4.98 0.00 44.58 2.78
234 235 7.323656 GGTTGATATGTCAAGAAACAAGAAACG 59.676 37.037 4.98 0.00 44.58 3.60
235 236 7.722795 TGATATGTCAAGAAACAAGAAACGA 57.277 32.000 0.00 0.00 31.81 3.85
236 237 7.796838 TGATATGTCAAGAAACAAGAAACGAG 58.203 34.615 0.00 0.00 31.81 4.18
237 238 4.875544 TGTCAAGAAACAAGAAACGAGG 57.124 40.909 0.00 0.00 0.00 4.63
238 239 4.258543 TGTCAAGAAACAAGAAACGAGGT 58.741 39.130 0.00 0.00 0.00 3.85
239 240 5.421277 TGTCAAGAAACAAGAAACGAGGTA 58.579 37.500 0.00 0.00 0.00 3.08
240 241 5.522460 TGTCAAGAAACAAGAAACGAGGTAG 59.478 40.000 0.00 0.00 0.00 3.18
241 242 5.751990 GTCAAGAAACAAGAAACGAGGTAGA 59.248 40.000 0.00 0.00 0.00 2.59
242 243 6.257193 GTCAAGAAACAAGAAACGAGGTAGAA 59.743 38.462 0.00 0.00 0.00 2.10
243 244 6.479001 TCAAGAAACAAGAAACGAGGTAGAAG 59.521 38.462 0.00 0.00 0.00 2.85
244 245 5.915175 AGAAACAAGAAACGAGGTAGAAGT 58.085 37.500 0.00 0.00 0.00 3.01
245 246 6.346896 AGAAACAAGAAACGAGGTAGAAGTT 58.653 36.000 0.00 0.00 0.00 2.66
246 247 7.495055 AGAAACAAGAAACGAGGTAGAAGTTA 58.505 34.615 0.00 0.00 0.00 2.24
247 248 7.983484 AGAAACAAGAAACGAGGTAGAAGTTAA 59.017 33.333 0.00 0.00 0.00 2.01
248 249 8.672823 AAACAAGAAACGAGGTAGAAGTTAAT 57.327 30.769 0.00 0.00 0.00 1.40
249 250 7.653767 ACAAGAAACGAGGTAGAAGTTAATG 57.346 36.000 0.00 0.00 0.00 1.90
250 251 6.147328 ACAAGAAACGAGGTAGAAGTTAATGC 59.853 38.462 0.00 0.00 0.00 3.56
251 252 5.790593 AGAAACGAGGTAGAAGTTAATGCA 58.209 37.500 0.00 0.00 0.00 3.96
252 253 5.638234 AGAAACGAGGTAGAAGTTAATGCAC 59.362 40.000 0.00 0.00 0.00 4.57
253 254 3.858247 ACGAGGTAGAAGTTAATGCACC 58.142 45.455 0.00 0.00 0.00 5.01
254 255 2.858344 CGAGGTAGAAGTTAATGCACCG 59.142 50.000 0.00 0.00 0.00 4.94
255 256 2.608090 GAGGTAGAAGTTAATGCACCGC 59.392 50.000 0.00 0.00 0.00 5.68
256 257 1.326548 GGTAGAAGTTAATGCACCGCG 59.673 52.381 0.00 0.00 0.00 6.46
257 258 1.003851 TAGAAGTTAATGCACCGCGC 58.996 50.000 0.00 0.00 42.89 6.86
258 259 1.226295 GAAGTTAATGCACCGCGCC 60.226 57.895 0.00 0.00 41.33 6.53
259 260 1.644786 GAAGTTAATGCACCGCGCCT 61.645 55.000 0.00 0.00 41.33 5.52
260 261 1.241315 AAGTTAATGCACCGCGCCTT 61.241 50.000 0.00 0.00 41.33 4.35
261 262 0.391927 AGTTAATGCACCGCGCCTTA 60.392 50.000 0.00 0.00 41.33 2.69
262 263 0.027586 GTTAATGCACCGCGCCTTAG 59.972 55.000 0.00 0.00 41.33 2.18
263 264 0.391927 TTAATGCACCGCGCCTTAGT 60.392 50.000 0.00 0.00 41.33 2.24
264 265 1.087202 TAATGCACCGCGCCTTAGTG 61.087 55.000 0.00 4.02 41.33 2.74
265 266 3.605749 ATGCACCGCGCCTTAGTGT 62.606 57.895 12.83 0.00 41.33 3.55
266 267 3.047877 GCACCGCGCCTTAGTGTT 61.048 61.111 12.83 0.00 33.96 3.32
267 268 2.613506 GCACCGCGCCTTAGTGTTT 61.614 57.895 12.83 0.00 33.96 2.83
268 269 1.946267 CACCGCGCCTTAGTGTTTT 59.054 52.632 0.00 0.00 0.00 2.43
269 270 0.385473 CACCGCGCCTTAGTGTTTTG 60.385 55.000 0.00 0.00 0.00 2.44
270 271 1.209127 CCGCGCCTTAGTGTTTTGG 59.791 57.895 0.00 0.00 0.00 3.28
271 272 1.209127 CGCGCCTTAGTGTTTTGGG 59.791 57.895 0.00 0.00 0.00 4.12
272 273 1.231958 CGCGCCTTAGTGTTTTGGGA 61.232 55.000 0.00 0.00 0.00 4.37
273 274 1.173913 GCGCCTTAGTGTTTTGGGAT 58.826 50.000 0.00 0.00 0.00 3.85
274 275 1.544246 GCGCCTTAGTGTTTTGGGATT 59.456 47.619 0.00 0.00 0.00 3.01
275 276 2.750712 GCGCCTTAGTGTTTTGGGATTA 59.249 45.455 0.00 0.00 0.00 1.75
276 277 3.380320 GCGCCTTAGTGTTTTGGGATTAT 59.620 43.478 0.00 0.00 0.00 1.28
277 278 4.142249 GCGCCTTAGTGTTTTGGGATTATT 60.142 41.667 0.00 0.00 0.00 1.40
278 279 5.623596 GCGCCTTAGTGTTTTGGGATTATTT 60.624 40.000 0.00 0.00 0.00 1.40
279 280 5.804979 CGCCTTAGTGTTTTGGGATTATTTG 59.195 40.000 0.00 0.00 0.00 2.32
280 281 6.106003 GCCTTAGTGTTTTGGGATTATTTGG 58.894 40.000 0.00 0.00 0.00 3.28
281 282 6.295632 GCCTTAGTGTTTTGGGATTATTTGGT 60.296 38.462 0.00 0.00 0.00 3.67
282 283 7.676004 CCTTAGTGTTTTGGGATTATTTGGTT 58.324 34.615 0.00 0.00 0.00 3.67
283 284 8.154203 CCTTAGTGTTTTGGGATTATTTGGTTT 58.846 33.333 0.00 0.00 0.00 3.27
284 285 9.554395 CTTAGTGTTTTGGGATTATTTGGTTTT 57.446 29.630 0.00 0.00 0.00 2.43
285 286 9.549078 TTAGTGTTTTGGGATTATTTGGTTTTC 57.451 29.630 0.00 0.00 0.00 2.29
286 287 6.704050 AGTGTTTTGGGATTATTTGGTTTTCG 59.296 34.615 0.00 0.00 0.00 3.46
287 288 6.480651 GTGTTTTGGGATTATTTGGTTTTCGT 59.519 34.615 0.00 0.00 0.00 3.85
288 289 7.652507 GTGTTTTGGGATTATTTGGTTTTCGTA 59.347 33.333 0.00 0.00 0.00 3.43
289 290 8.202137 TGTTTTGGGATTATTTGGTTTTCGTAA 58.798 29.630 0.00 0.00 0.00 3.18
290 291 8.705134 GTTTTGGGATTATTTGGTTTTCGTAAG 58.295 33.333 0.00 0.00 0.00 2.34
311 312 5.860941 AGATGACTTACACACCTAGATGG 57.139 43.478 0.00 0.00 42.93 3.51
312 313 5.519808 AGATGACTTACACACCTAGATGGA 58.480 41.667 0.00 0.00 39.71 3.41
313 314 5.596361 AGATGACTTACACACCTAGATGGAG 59.404 44.000 0.00 0.00 39.71 3.86
314 315 4.023980 TGACTTACACACCTAGATGGAGG 58.976 47.826 0.00 0.00 42.89 4.30
315 316 3.375699 ACTTACACACCTAGATGGAGGG 58.624 50.000 0.00 0.00 41.36 4.30
316 317 3.012502 ACTTACACACCTAGATGGAGGGA 59.987 47.826 0.00 0.00 41.36 4.20
317 318 2.166907 ACACACCTAGATGGAGGGAG 57.833 55.000 0.00 0.00 41.36 4.30
318 319 1.362932 ACACACCTAGATGGAGGGAGT 59.637 52.381 0.00 0.00 41.36 3.85
319 320 2.585900 ACACACCTAGATGGAGGGAGTA 59.414 50.000 0.00 0.00 41.36 2.59
320 321 2.959707 CACACCTAGATGGAGGGAGTAC 59.040 54.545 0.00 0.00 41.36 2.73
321 322 2.231529 CACCTAGATGGAGGGAGTACG 58.768 57.143 0.00 0.00 41.36 3.67
322 323 1.851653 ACCTAGATGGAGGGAGTACGT 59.148 52.381 0.00 0.00 41.36 3.57
323 324 3.051581 ACCTAGATGGAGGGAGTACGTA 58.948 50.000 0.00 0.00 41.36 3.57
324 325 3.072768 ACCTAGATGGAGGGAGTACGTAG 59.927 52.174 0.00 0.00 41.36 3.51
325 326 3.327172 CCTAGATGGAGGGAGTACGTAGA 59.673 52.174 0.00 0.00 38.35 2.59
326 327 3.495434 AGATGGAGGGAGTACGTAGAG 57.505 52.381 0.00 0.00 0.00 2.43
327 328 2.778850 AGATGGAGGGAGTACGTAGAGT 59.221 50.000 0.00 0.00 0.00 3.24
328 329 2.414994 TGGAGGGAGTACGTAGAGTG 57.585 55.000 0.00 0.00 0.00 3.51
340 341 3.498334 ACGTAGAGTGGTCTCCTTTCTT 58.502 45.455 0.00 0.00 41.26 2.52
376 377 7.354312 ACCCCAAAATAGATACAAATACTGCT 58.646 34.615 0.00 0.00 0.00 4.24
377 378 7.839200 ACCCCAAAATAGATACAAATACTGCTT 59.161 33.333 0.00 0.00 0.00 3.91
378 379 9.349713 CCCCAAAATAGATACAAATACTGCTTA 57.650 33.333 0.00 0.00 0.00 3.09
434 435 7.129622 ACACTTATTTACAACACGTTGACATG 58.870 34.615 16.48 0.00 42.93 3.21
437 438 3.326733 TTACAACACGTTGACATGCAC 57.673 42.857 16.48 0.00 42.93 4.57
480 481 5.762179 TGTTTAGTCACCCATCTCTCATT 57.238 39.130 0.00 0.00 0.00 2.57
481 482 6.126863 TGTTTAGTCACCCATCTCTCATTT 57.873 37.500 0.00 0.00 0.00 2.32
489 490 4.098960 CACCCATCTCTCATTTTTCCATGG 59.901 45.833 4.97 4.97 0.00 3.66
553 555 4.430908 CTCAAACGACAGGTAGTATTCCC 58.569 47.826 0.00 0.00 0.00 3.97
692 705 2.584835 TTAAGCCTGAACCAGCACAT 57.415 45.000 0.00 0.00 0.00 3.21
743 768 2.159599 CCAAAGAATCAGAACTCTGCGC 60.160 50.000 0.00 0.00 43.46 6.09
760 785 1.737838 CGCAGAGAGGCCAAATACAA 58.262 50.000 5.01 0.00 0.00 2.41
785 810 3.734902 GCTGTATCGCCAAGGAAAAATGG 60.735 47.826 0.00 0.00 39.80 3.16
786 811 3.426615 TGTATCGCCAAGGAAAAATGGT 58.573 40.909 0.00 0.00 39.00 3.55
787 812 4.590918 TGTATCGCCAAGGAAAAATGGTA 58.409 39.130 0.00 0.00 39.00 3.25
907 936 6.777213 AATGTTAACTAGGTCGACTGAGAT 57.223 37.500 16.46 9.95 0.00 2.75
918 947 3.057174 GTCGACTGAGATCTGTTTCACCT 60.057 47.826 8.70 0.00 0.00 4.00
936 965 4.074970 CACCTTTCTAGCTGTTCCACAAT 58.925 43.478 0.00 0.00 0.00 2.71
937 966 5.012664 TCACCTTTCTAGCTGTTCCACAATA 59.987 40.000 0.00 0.00 0.00 1.90
941 970 5.738619 TTCTAGCTGTTCCACAATAGTCA 57.261 39.130 0.00 0.00 0.00 3.41
944 973 3.412386 AGCTGTTCCACAATAGTCAACC 58.588 45.455 0.00 0.00 0.00 3.77
962 991 1.202580 ACCTCTTGATCATACCTGCGC 60.203 52.381 0.00 0.00 0.00 6.09
968 997 1.401552 TGATCATACCTGCGCTTTTGC 59.598 47.619 9.73 0.00 43.23 3.68
1112 1141 7.148457 GGACGTAATCTTCTTCCAGGTAAAAAG 60.148 40.741 0.00 0.00 0.00 2.27
1121 1165 7.329588 TCTTCCAGGTAAAAAGAAAACTCAC 57.670 36.000 0.00 0.00 0.00 3.51
1122 1166 7.116736 TCTTCCAGGTAAAAAGAAAACTCACT 58.883 34.615 0.00 0.00 0.00 3.41
1124 1168 8.990163 TTCCAGGTAAAAAGAAAACTCACTAT 57.010 30.769 0.00 0.00 0.00 2.12
1153 1197 2.580470 CGCTACTGATTCGCCTGCG 61.580 63.158 4.92 4.92 41.35 5.18
1177 1221 6.183360 CGTAAATCCATTCTCATCCATCGATG 60.183 42.308 18.76 18.76 46.30 3.84
1224 1271 1.942657 CAGGAAATCACGCCCTACATG 59.057 52.381 0.00 0.00 0.00 3.21
1230 1277 0.391130 TCACGCCCTACATGCACTTC 60.391 55.000 0.00 0.00 0.00 3.01
1349 1402 3.154710 ACTCGGAAATTTTCAGTTCCCC 58.845 45.455 11.09 0.00 43.20 4.81
1374 1427 4.714802 TCCTAGAAATTTGTCTGATCCGGA 59.285 41.667 6.61 6.61 0.00 5.14
1389 1442 3.322211 TCCGGAGAATTAACGCAGAAA 57.678 42.857 0.00 0.00 0.00 2.52
1394 1447 5.258622 CGGAGAATTAACGCAGAAATTCTG 58.741 41.667 18.02 18.02 45.73 3.02
1441 1510 2.728180 CTATGCGCGCTGGGAGTA 59.272 61.111 33.29 10.54 0.00 2.59
1523 1601 1.364171 GATCCGCATCGCCACTACT 59.636 57.895 0.00 0.00 0.00 2.57
1590 1669 0.962356 GTACATGCAGGCCAAGCACT 60.962 55.000 23.00 14.24 45.95 4.40
1641 1720 1.959226 GTGTTCGGTGGCGACATGT 60.959 57.895 0.00 0.00 46.14 3.21
1642 1721 1.227704 TGTTCGGTGGCGACATGTT 60.228 52.632 0.00 0.00 46.14 2.71
1643 1722 1.225376 TGTTCGGTGGCGACATGTTC 61.225 55.000 0.00 0.00 46.14 3.18
1685 1764 2.592993 CCGTTCCCTCTCCCTGCAA 61.593 63.158 0.00 0.00 0.00 4.08
1687 1766 1.544825 CGTTCCCTCTCCCTGCAAGA 61.545 60.000 0.00 0.00 34.07 3.02
1810 1902 0.884704 TCCCTCACTTCAACAAGCGC 60.885 55.000 0.00 0.00 32.09 5.92
1820 1912 1.664965 AACAAGCGCTCAGACCGAC 60.665 57.895 12.06 0.00 0.00 4.79
1910 2017 8.842358 AATATATTGTTACCATAAGGACCACG 57.158 34.615 0.00 0.00 38.69 4.94
2009 2125 7.486551 TGTTGTTAAGTGCACAATGAAAGTTAC 59.513 33.333 21.04 4.98 36.54 2.50
2052 2170 0.038343 TGGGATTGCTTGCTTTTCGC 60.038 50.000 0.00 0.00 39.77 4.70
2075 2193 2.170397 ACGGATGTCACCAGCATATTGA 59.830 45.455 0.00 0.00 0.00 2.57
2080 2198 4.492494 TGTCACCAGCATATTGACATCT 57.508 40.909 3.55 0.00 43.63 2.90
2134 2252 4.875544 TGCATCGAGGCTTAATTTGTAC 57.124 40.909 23.78 0.00 34.04 2.90
2135 2253 4.257731 TGCATCGAGGCTTAATTTGTACA 58.742 39.130 23.78 0.00 34.04 2.90
2136 2254 4.332543 TGCATCGAGGCTTAATTTGTACAG 59.667 41.667 23.78 0.00 34.04 2.74
2137 2255 4.332819 GCATCGAGGCTTAATTTGTACAGT 59.667 41.667 16.00 0.00 0.00 3.55
2138 2256 5.163754 GCATCGAGGCTTAATTTGTACAGTT 60.164 40.000 16.00 0.00 0.00 3.16
2139 2257 6.622896 GCATCGAGGCTTAATTTGTACAGTTT 60.623 38.462 16.00 0.00 0.00 2.66
2140 2258 6.236017 TCGAGGCTTAATTTGTACAGTTTG 57.764 37.500 0.00 0.00 0.00 2.93
2141 2259 5.761234 TCGAGGCTTAATTTGTACAGTTTGT 59.239 36.000 0.00 0.00 0.00 2.83
2142 2260 6.073440 TCGAGGCTTAATTTGTACAGTTTGTC 60.073 38.462 0.00 0.00 0.00 3.18
2143 2261 6.073222 CGAGGCTTAATTTGTACAGTTTGTCT 60.073 38.462 0.00 0.14 0.00 3.41
2144 2262 7.117236 CGAGGCTTAATTTGTACAGTTTGTCTA 59.883 37.037 0.00 0.00 0.00 2.59
2145 2263 8.685838 AGGCTTAATTTGTACAGTTTGTCTAA 57.314 30.769 0.00 0.00 0.00 2.10
2146 2264 9.297037 AGGCTTAATTTGTACAGTTTGTCTAAT 57.703 29.630 0.00 0.00 0.00 1.73
2147 2265 9.908152 GGCTTAATTTGTACAGTTTGTCTAATT 57.092 29.630 0.00 0.00 0.00 1.40
2154 2272 8.902540 TTGTACAGTTTGTCTAATTCACATCT 57.097 30.769 0.00 0.00 0.00 2.90
2155 2273 9.990360 TTGTACAGTTTGTCTAATTCACATCTA 57.010 29.630 0.00 0.00 0.00 1.98
2156 2274 9.639601 TGTACAGTTTGTCTAATTCACATCTAG 57.360 33.333 0.00 0.00 0.00 2.43
2157 2275 9.856488 GTACAGTTTGTCTAATTCACATCTAGA 57.144 33.333 0.00 0.00 0.00 2.43
2159 2277 9.950496 ACAGTTTGTCTAATTCACATCTAGATT 57.050 29.630 1.33 0.00 0.00 2.40
2186 2304 8.635765 TTTTTAAGGATGTCACATCTAAGCTT 57.364 30.769 17.46 13.56 0.00 3.74
2187 2305 8.635765 TTTTAAGGATGTCACATCTAAGCTTT 57.364 30.769 17.46 5.80 0.00 3.51
2188 2306 7.849804 TTAAGGATGTCACATCTAAGCTTTC 57.150 36.000 17.46 0.00 0.00 2.62
2189 2307 5.426689 AGGATGTCACATCTAAGCTTTCA 57.573 39.130 17.46 0.00 0.00 2.69
2190 2308 5.181748 AGGATGTCACATCTAAGCTTTCAC 58.818 41.667 17.46 0.00 0.00 3.18
2191 2309 4.937620 GGATGTCACATCTAAGCTTTCACA 59.062 41.667 17.46 0.00 0.00 3.58
2192 2310 5.412594 GGATGTCACATCTAAGCTTTCACAA 59.587 40.000 17.46 0.00 0.00 3.33
2193 2311 6.072508 GGATGTCACATCTAAGCTTTCACAAA 60.073 38.462 17.46 0.00 0.00 2.83
2194 2312 6.882610 TGTCACATCTAAGCTTTCACAAAT 57.117 33.333 3.20 0.00 0.00 2.32
2195 2313 7.977789 TGTCACATCTAAGCTTTCACAAATA 57.022 32.000 3.20 0.00 0.00 1.40
2196 2314 8.565896 TGTCACATCTAAGCTTTCACAAATAT 57.434 30.769 3.20 0.00 0.00 1.28
2197 2315 9.665719 TGTCACATCTAAGCTTTCACAAATATA 57.334 29.630 3.20 0.00 0.00 0.86
2204 2322 9.341078 TCTAAGCTTTCACAAATATATGATGCA 57.659 29.630 3.20 0.00 31.29 3.96
2205 2323 9.955208 CTAAGCTTTCACAAATATATGATGCAA 57.045 29.630 3.20 0.00 31.29 4.08
2206 2324 8.638685 AAGCTTTCACAAATATATGATGCAAC 57.361 30.769 0.00 0.00 31.29 4.17
2207 2325 7.774134 AGCTTTCACAAATATATGATGCAACA 58.226 30.769 0.00 0.00 31.29 3.33
2208 2326 8.252417 AGCTTTCACAAATATATGATGCAACAA 58.748 29.630 0.00 0.00 31.29 2.83
2209 2327 9.037737 GCTTTCACAAATATATGATGCAACAAT 57.962 29.630 0.00 0.00 0.00 2.71
2254 2372 8.474006 AAAAATAGACCACAAACAAAGTGAAC 57.526 30.769 0.00 0.00 39.30 3.18
2255 2373 6.767524 AATAGACCACAAACAAAGTGAACA 57.232 33.333 0.00 0.00 39.30 3.18
2256 2374 6.959639 ATAGACCACAAACAAAGTGAACAT 57.040 33.333 0.00 0.00 39.30 2.71
2257 2375 5.248870 AGACCACAAACAAAGTGAACATC 57.751 39.130 0.00 0.00 39.30 3.06
2258 2376 4.704540 AGACCACAAACAAAGTGAACATCA 59.295 37.500 0.00 0.00 39.30 3.07
2259 2377 4.997565 ACCACAAACAAAGTGAACATCAG 58.002 39.130 0.00 0.00 39.30 2.90
2260 2378 4.462483 ACCACAAACAAAGTGAACATCAGT 59.538 37.500 0.00 0.00 39.30 3.41
2261 2379 5.047377 ACCACAAACAAAGTGAACATCAGTT 60.047 36.000 0.00 0.00 41.46 3.16
2263 2381 7.032580 CCACAAACAAAGTGAACATCAGTTTA 58.967 34.615 11.63 0.00 45.35 2.01
2264 2382 7.220683 CCACAAACAAAGTGAACATCAGTTTAG 59.779 37.037 11.63 9.39 45.35 1.85
2265 2383 7.967854 CACAAACAAAGTGAACATCAGTTTAGA 59.032 33.333 11.63 0.00 45.35 2.10
2266 2384 8.686334 ACAAACAAAGTGAACATCAGTTTAGAT 58.314 29.630 11.63 0.95 45.35 1.98
2267 2385 8.961092 CAAACAAAGTGAACATCAGTTTAGATG 58.039 33.333 11.63 2.62 45.35 2.90
2280 2398 9.809096 CATCAGTTTAGATGTGACATAACTAGT 57.191 33.333 10.81 0.00 40.35 2.57
2282 2400 9.020731 TCAGTTTAGATGTGACATAACTAGTCA 57.979 33.333 10.81 0.00 43.23 3.41
2292 2410 7.247929 TGACATAACTAGTCACATCTAGACG 57.752 40.000 0.00 0.00 40.80 4.18
2293 2411 6.822170 TGACATAACTAGTCACATCTAGACGT 59.178 38.462 0.00 0.00 40.80 4.34
2294 2412 7.017498 ACATAACTAGTCACATCTAGACGTG 57.983 40.000 12.71 12.71 40.84 4.49
2295 2413 6.598457 ACATAACTAGTCACATCTAGACGTGT 59.402 38.462 17.78 6.01 40.84 4.49
2296 2414 5.548706 AACTAGTCACATCTAGACGTGTC 57.451 43.478 17.78 12.78 40.84 3.67
2297 2415 3.940221 ACTAGTCACATCTAGACGTGTCC 59.060 47.826 17.78 10.28 40.84 4.02
2298 2416 3.074675 AGTCACATCTAGACGTGTCCT 57.925 47.619 17.78 12.18 40.84 3.85
2299 2417 4.217836 AGTCACATCTAGACGTGTCCTA 57.782 45.455 17.78 0.00 40.84 2.94
2300 2418 4.193090 AGTCACATCTAGACGTGTCCTAG 58.807 47.826 17.78 0.00 40.84 3.02
2301 2419 4.081031 AGTCACATCTAGACGTGTCCTAGA 60.081 45.833 17.78 13.14 44.50 2.43
2302 2420 4.034279 GTCACATCTAGACGTGTCCTAGAC 59.966 50.000 17.78 8.41 43.57 2.59
2303 2421 3.939592 CACATCTAGACGTGTCCTAGACA 59.060 47.826 10.77 0.00 43.57 3.41
2304 2422 4.034626 CACATCTAGACGTGTCCTAGACAG 59.965 50.000 10.77 11.44 43.57 3.51
2305 2423 4.081031 ACATCTAGACGTGTCCTAGACAGA 60.081 45.833 13.06 0.00 43.57 3.41
2306 2424 3.859443 TCTAGACGTGTCCTAGACAGAC 58.141 50.000 8.07 0.00 43.57 3.51
2307 2425 1.823797 AGACGTGTCCTAGACAGACC 58.176 55.000 0.00 0.00 43.57 3.85
2308 2426 0.810016 GACGTGTCCTAGACAGACCC 59.190 60.000 0.00 0.00 43.57 4.46
2309 2427 0.404812 ACGTGTCCTAGACAGACCCT 59.595 55.000 0.00 0.00 43.57 4.34
2310 2428 1.632409 ACGTGTCCTAGACAGACCCTA 59.368 52.381 0.00 0.00 43.57 3.53
2311 2429 2.040813 ACGTGTCCTAGACAGACCCTAA 59.959 50.000 0.00 0.00 43.57 2.69
2312 2430 3.288964 CGTGTCCTAGACAGACCCTAAT 58.711 50.000 0.00 0.00 43.57 1.73
2313 2431 3.700038 CGTGTCCTAGACAGACCCTAATT 59.300 47.826 0.00 0.00 43.57 1.40
2314 2432 4.159879 CGTGTCCTAGACAGACCCTAATTT 59.840 45.833 0.00 0.00 43.57 1.82
2315 2433 5.420409 GTGTCCTAGACAGACCCTAATTTG 58.580 45.833 0.00 0.00 43.57 2.32
2316 2434 5.046520 GTGTCCTAGACAGACCCTAATTTGT 60.047 44.000 0.00 0.00 43.57 2.83
2317 2435 6.154021 GTGTCCTAGACAGACCCTAATTTGTA 59.846 42.308 0.00 0.00 43.57 2.41
2318 2436 6.901300 TGTCCTAGACAGACCCTAATTTGTAT 59.099 38.462 0.00 0.00 37.67 2.29
2319 2437 8.063153 TGTCCTAGACAGACCCTAATTTGTATA 58.937 37.037 0.00 0.00 37.67 1.47
2338 2456 7.806680 TGTATATGGTCCCATACATGTATGT 57.193 36.000 33.33 21.35 41.09 2.29
2360 2478 6.936279 TGTATTGTTCAGTTTTTGTTTCCCA 58.064 32.000 0.00 0.00 0.00 4.37
2417 2535 1.937546 GCCCCAACTCATCTTTGCCG 61.938 60.000 0.00 0.00 0.00 5.69
2420 2538 1.678728 CCCAACTCATCTTTGCCGCTA 60.679 52.381 0.00 0.00 0.00 4.26
2427 2545 0.328258 ATCTTTGCCGCTACCCAAGT 59.672 50.000 0.00 0.00 0.00 3.16
2439 2557 1.995376 ACCCAAGTTGTGGTTGGATC 58.005 50.000 9.49 0.00 46.53 3.36
2449 2567 2.369203 TGTGGTTGGATCGTTAGGACAA 59.631 45.455 0.00 0.00 0.00 3.18
2458 2576 7.834881 TGGATCGTTAGGACAATAGTATCTT 57.165 36.000 0.00 0.00 0.00 2.40
2459 2577 7.658261 TGGATCGTTAGGACAATAGTATCTTG 58.342 38.462 0.00 0.00 0.00 3.02
2460 2578 7.091443 GGATCGTTAGGACAATAGTATCTTGG 58.909 42.308 0.00 0.00 0.00 3.61
2472 2590 1.140312 TATCTTGGGCCCATCAGGTC 58.860 55.000 29.23 0.00 40.81 3.85
2548 2666 5.106791 CGATGCTTTTTCAGTGTGAGAAGAT 60.107 40.000 0.00 0.00 0.00 2.40
2553 2671 6.753744 GCTTTTTCAGTGTGAGAAGATGTTTT 59.246 34.615 0.00 0.00 0.00 2.43
2555 2673 5.657470 TTCAGTGTGAGAAGATGTTTTCG 57.343 39.130 0.00 0.00 32.33 3.46
2560 2678 4.386049 GTGTGAGAAGATGTTTTCGTCGAT 59.614 41.667 0.00 0.00 40.47 3.59
2562 2680 5.107491 TGTGAGAAGATGTTTTCGTCGATTG 60.107 40.000 0.00 0.00 40.47 2.67
2574 2692 0.955428 GTCGATTGCAAGGTGCCTCA 60.955 55.000 4.94 0.00 44.23 3.86
2584 2702 1.374758 GGTGCCTCAGGTGACTTCG 60.375 63.158 0.00 0.00 40.21 3.79
2614 2732 8.502105 TCTTAAGATAATATGTCGATCGGCTA 57.498 34.615 21.85 10.95 0.00 3.93
2649 2767 1.689273 GCTCATAGAGGTAGGGTGTGG 59.311 57.143 0.00 0.00 0.00 4.17
2669 2787 1.613255 GGTGTGTGTGTTCATAGGGGG 60.613 57.143 0.00 0.00 0.00 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.760077 GGGAGTATTACTTTTCGAAGATTGATA 57.240 33.333 0.00 0.00 35.04 2.15
6 7 7.848128 AGGGAGTATTACTTTTCGAAGATTGA 58.152 34.615 0.00 0.00 35.04 2.57
7 8 7.224949 GGAGGGAGTATTACTTTTCGAAGATTG 59.775 40.741 0.00 0.00 35.04 2.67
10 11 5.163581 CGGAGGGAGTATTACTTTTCGAAGA 60.164 44.000 0.00 0.00 0.00 2.87
11 12 5.041940 CGGAGGGAGTATTACTTTTCGAAG 58.958 45.833 0.00 0.00 0.00 3.79
12 13 4.463891 ACGGAGGGAGTATTACTTTTCGAA 59.536 41.667 0.00 0.00 0.00 3.71
13 14 4.019174 ACGGAGGGAGTATTACTTTTCGA 58.981 43.478 0.00 0.00 0.00 3.71
14 15 4.097589 AGACGGAGGGAGTATTACTTTTCG 59.902 45.833 0.00 1.28 0.00 3.46
15 16 5.595257 AGACGGAGGGAGTATTACTTTTC 57.405 43.478 0.00 0.00 0.00 2.29
16 17 5.597594 CCTAGACGGAGGGAGTATTACTTTT 59.402 44.000 0.00 0.00 32.39 2.27
17 18 5.139001 CCTAGACGGAGGGAGTATTACTTT 58.861 45.833 0.00 0.00 32.39 2.66
18 19 4.167697 ACCTAGACGGAGGGAGTATTACTT 59.832 45.833 0.00 0.00 41.36 2.24
19 20 3.721050 ACCTAGACGGAGGGAGTATTACT 59.279 47.826 0.00 0.00 41.36 2.24
20 21 3.819902 CACCTAGACGGAGGGAGTATTAC 59.180 52.174 5.42 0.00 41.36 1.89
21 22 3.718434 TCACCTAGACGGAGGGAGTATTA 59.282 47.826 5.42 0.00 41.36 0.98
22 23 2.512896 TCACCTAGACGGAGGGAGTATT 59.487 50.000 5.42 0.00 41.36 1.89
23 24 2.106857 CTCACCTAGACGGAGGGAGTAT 59.893 54.545 5.42 0.00 41.36 2.12
24 25 1.489649 CTCACCTAGACGGAGGGAGTA 59.510 57.143 5.42 0.00 41.36 2.59
25 26 0.256464 CTCACCTAGACGGAGGGAGT 59.744 60.000 5.42 0.00 41.36 3.85
26 27 0.256464 ACTCACCTAGACGGAGGGAG 59.744 60.000 12.80 12.80 41.36 4.30
27 28 1.588239 TACTCACCTAGACGGAGGGA 58.412 55.000 5.42 0.16 41.36 4.20
28 29 2.299521 CTTACTCACCTAGACGGAGGG 58.700 57.143 5.42 0.00 41.36 4.30
29 30 2.944349 GACTTACTCACCTAGACGGAGG 59.056 54.545 0.00 0.00 42.89 4.30
30 31 3.607741 TGACTTACTCACCTAGACGGAG 58.392 50.000 0.00 0.00 36.31 4.63
31 32 3.708403 TGACTTACTCACCTAGACGGA 57.292 47.619 0.00 0.00 36.31 4.69
32 33 4.200874 AGATGACTTACTCACCTAGACGG 58.799 47.826 0.00 0.00 39.35 4.79
33 34 5.821516 AAGATGACTTACTCACCTAGACG 57.178 43.478 0.00 0.00 34.28 4.18
34 35 6.829811 ACCTAAGATGACTTACTCACCTAGAC 59.170 42.308 0.00 0.00 37.53 2.59
35 36 6.971340 ACCTAAGATGACTTACTCACCTAGA 58.029 40.000 0.00 0.00 37.53 2.43
36 37 7.122948 ACAACCTAAGATGACTTACTCACCTAG 59.877 40.741 0.00 0.00 37.53 3.02
37 38 6.952358 ACAACCTAAGATGACTTACTCACCTA 59.048 38.462 0.00 0.00 37.53 3.08
38 39 5.780793 ACAACCTAAGATGACTTACTCACCT 59.219 40.000 0.00 0.00 37.53 4.00
39 40 5.869888 CACAACCTAAGATGACTTACTCACC 59.130 44.000 0.00 0.00 37.53 4.02
40 41 5.348997 GCACAACCTAAGATGACTTACTCAC 59.651 44.000 0.00 0.00 37.53 3.51
41 42 5.011635 TGCACAACCTAAGATGACTTACTCA 59.988 40.000 0.00 0.00 37.53 3.41
42 43 5.348997 GTGCACAACCTAAGATGACTTACTC 59.651 44.000 13.17 0.00 37.53 2.59
43 44 5.238583 GTGCACAACCTAAGATGACTTACT 58.761 41.667 13.17 0.00 37.53 2.24
44 45 4.392138 GGTGCACAACCTAAGATGACTTAC 59.608 45.833 20.43 0.00 46.55 2.34
45 46 4.575885 GGTGCACAACCTAAGATGACTTA 58.424 43.478 20.43 0.00 46.55 2.24
46 47 3.412386 GGTGCACAACCTAAGATGACTT 58.588 45.455 20.43 0.00 46.55 3.01
47 48 3.059352 GGTGCACAACCTAAGATGACT 57.941 47.619 20.43 0.00 46.55 3.41
57 58 2.058829 CTTGGTCACGGTGCACAACC 62.059 60.000 20.43 18.91 46.60 3.77
58 59 1.355210 CTTGGTCACGGTGCACAAC 59.645 57.895 20.43 10.47 0.00 3.32
59 60 1.821759 CCTTGGTCACGGTGCACAA 60.822 57.895 20.43 9.76 0.00 3.33
60 61 2.203139 CCTTGGTCACGGTGCACA 60.203 61.111 20.43 1.81 0.00 4.57
61 62 1.961277 CTCCTTGGTCACGGTGCAC 60.961 63.158 8.80 8.80 0.00 4.57
62 63 1.691195 TTCTCCTTGGTCACGGTGCA 61.691 55.000 2.51 0.00 0.00 4.57
63 64 0.951040 CTTCTCCTTGGTCACGGTGC 60.951 60.000 2.51 0.00 0.00 5.01
64 65 0.320771 CCTTCTCCTTGGTCACGGTG 60.321 60.000 0.56 0.56 0.00 4.94
65 66 0.471211 TCCTTCTCCTTGGTCACGGT 60.471 55.000 0.00 0.00 0.00 4.83
66 67 0.247736 CTCCTTCTCCTTGGTCACGG 59.752 60.000 0.00 0.00 0.00 4.94
67 68 1.257743 TCTCCTTCTCCTTGGTCACG 58.742 55.000 0.00 0.00 0.00 4.35
68 69 3.771577 TTTCTCCTTCTCCTTGGTCAC 57.228 47.619 0.00 0.00 0.00 3.67
69 70 3.494398 CGTTTTCTCCTTCTCCTTGGTCA 60.494 47.826 0.00 0.00 0.00 4.02
70 71 3.067833 CGTTTTCTCCTTCTCCTTGGTC 58.932 50.000 0.00 0.00 0.00 4.02
71 72 2.704065 TCGTTTTCTCCTTCTCCTTGGT 59.296 45.455 0.00 0.00 0.00 3.67
72 73 3.006967 TCTCGTTTTCTCCTTCTCCTTGG 59.993 47.826 0.00 0.00 0.00 3.61
73 74 4.258702 TCTCGTTTTCTCCTTCTCCTTG 57.741 45.455 0.00 0.00 0.00 3.61
74 75 4.957684 TTCTCGTTTTCTCCTTCTCCTT 57.042 40.909 0.00 0.00 0.00 3.36
75 76 4.957684 TTTCTCGTTTTCTCCTTCTCCT 57.042 40.909 0.00 0.00 0.00 3.69
76 77 5.483811 AGATTTCTCGTTTTCTCCTTCTCC 58.516 41.667 0.00 0.00 0.00 3.71
77 78 8.535690 TTAAGATTTCTCGTTTTCTCCTTCTC 57.464 34.615 0.00 0.00 0.00 2.87
78 79 8.940952 CATTAAGATTTCTCGTTTTCTCCTTCT 58.059 33.333 0.00 0.00 0.00 2.85
79 80 8.722394 ACATTAAGATTTCTCGTTTTCTCCTTC 58.278 33.333 0.00 0.00 0.00 3.46
80 81 8.622948 ACATTAAGATTTCTCGTTTTCTCCTT 57.377 30.769 0.00 0.00 0.00 3.36
81 82 8.622948 AACATTAAGATTTCTCGTTTTCTCCT 57.377 30.769 0.00 0.00 0.00 3.69
125 126 4.221262 AGTGGTTAGTTCATTGCATGCAAT 59.779 37.500 34.78 34.78 46.35 3.56
126 127 3.573538 AGTGGTTAGTTCATTGCATGCAA 59.426 39.130 33.57 33.57 40.47 4.08
127 128 3.057386 CAGTGGTTAGTTCATTGCATGCA 60.057 43.478 18.46 18.46 0.00 3.96
128 129 3.504863 CAGTGGTTAGTTCATTGCATGC 58.495 45.455 11.82 11.82 0.00 4.06
129 130 3.504863 GCAGTGGTTAGTTCATTGCATG 58.495 45.455 6.68 0.00 44.01 4.06
130 131 3.855689 GCAGTGGTTAGTTCATTGCAT 57.144 42.857 6.68 0.00 44.01 3.96
132 133 3.057315 ACATGCAGTGGTTAGTTCATTGC 60.057 43.478 0.00 4.92 44.56 3.56
133 134 4.669965 CGACATGCAGTGGTTAGTTCATTG 60.670 45.833 0.00 0.00 0.00 2.82
134 135 3.436704 CGACATGCAGTGGTTAGTTCATT 59.563 43.478 0.00 0.00 0.00 2.57
135 136 3.002791 CGACATGCAGTGGTTAGTTCAT 58.997 45.455 0.00 0.00 0.00 2.57
136 137 2.224185 ACGACATGCAGTGGTTAGTTCA 60.224 45.455 0.00 0.00 35.47 3.18
137 138 2.157668 CACGACATGCAGTGGTTAGTTC 59.842 50.000 11.93 0.00 37.03 3.01
138 139 2.143122 CACGACATGCAGTGGTTAGTT 58.857 47.619 11.93 0.00 37.03 2.24
139 140 1.070134 ACACGACATGCAGTGGTTAGT 59.930 47.619 20.60 1.96 42.25 2.24
140 141 1.795768 ACACGACATGCAGTGGTTAG 58.204 50.000 20.60 1.38 42.25 2.34
141 142 2.248280 AACACGACATGCAGTGGTTA 57.752 45.000 20.60 0.00 42.25 2.85
142 143 1.388547 AAACACGACATGCAGTGGTT 58.611 45.000 20.60 18.36 42.73 3.67
143 144 0.662619 CAAACACGACATGCAGTGGT 59.337 50.000 20.60 14.15 42.25 4.16
144 145 0.040157 CCAAACACGACATGCAGTGG 60.040 55.000 20.60 3.36 42.25 4.00
145 146 0.662619 ACCAAACACGACATGCAGTG 59.337 50.000 16.62 16.62 43.46 3.66
146 147 2.143122 CTACCAAACACGACATGCAGT 58.857 47.619 0.00 0.00 0.00 4.40
147 148 2.143122 ACTACCAAACACGACATGCAG 58.857 47.619 0.00 0.00 0.00 4.41
148 149 2.139917 GACTACCAAACACGACATGCA 58.860 47.619 0.00 0.00 0.00 3.96
149 150 2.412089 GAGACTACCAAACACGACATGC 59.588 50.000 0.00 0.00 0.00 4.06
150 151 3.649073 TGAGACTACCAAACACGACATG 58.351 45.455 0.00 0.00 0.00 3.21
151 152 4.202223 ACTTGAGACTACCAAACACGACAT 60.202 41.667 0.00 0.00 0.00 3.06
152 153 3.131577 ACTTGAGACTACCAAACACGACA 59.868 43.478 0.00 0.00 0.00 4.35
153 154 3.714391 ACTTGAGACTACCAAACACGAC 58.286 45.455 0.00 0.00 0.00 4.34
154 155 4.395959 AACTTGAGACTACCAAACACGA 57.604 40.909 0.00 0.00 0.00 4.35
155 156 6.780706 AATAACTTGAGACTACCAAACACG 57.219 37.500 0.00 0.00 0.00 4.49
158 159 9.608617 GCTTTTAATAACTTGAGACTACCAAAC 57.391 33.333 0.00 0.00 0.00 2.93
159 160 9.344772 TGCTTTTAATAACTTGAGACTACCAAA 57.655 29.630 0.00 0.00 0.00 3.28
160 161 8.911918 TGCTTTTAATAACTTGAGACTACCAA 57.088 30.769 0.00 0.00 0.00 3.67
161 162 8.946085 CATGCTTTTAATAACTTGAGACTACCA 58.054 33.333 0.00 0.00 0.00 3.25
162 163 7.910683 GCATGCTTTTAATAACTTGAGACTACC 59.089 37.037 11.37 0.00 0.00 3.18
163 164 8.450964 TGCATGCTTTTAATAACTTGAGACTAC 58.549 33.333 20.33 0.00 0.00 2.73
164 165 8.450964 GTGCATGCTTTTAATAACTTGAGACTA 58.549 33.333 20.33 0.00 0.00 2.59
165 166 7.040478 TGTGCATGCTTTTAATAACTTGAGACT 60.040 33.333 20.33 0.00 0.00 3.24
166 167 7.061094 GTGTGCATGCTTTTAATAACTTGAGAC 59.939 37.037 20.33 2.56 0.00 3.36
167 168 7.083858 GTGTGCATGCTTTTAATAACTTGAGA 58.916 34.615 20.33 0.00 0.00 3.27
168 169 6.308766 GGTGTGCATGCTTTTAATAACTTGAG 59.691 38.462 20.33 0.00 0.00 3.02
169 170 6.155827 GGTGTGCATGCTTTTAATAACTTGA 58.844 36.000 20.33 0.00 0.00 3.02
170 171 5.348451 GGGTGTGCATGCTTTTAATAACTTG 59.652 40.000 20.33 0.00 0.00 3.16
171 172 5.478407 GGGTGTGCATGCTTTTAATAACTT 58.522 37.500 20.33 0.00 0.00 2.66
172 173 4.081697 GGGGTGTGCATGCTTTTAATAACT 60.082 41.667 20.33 0.00 0.00 2.24
173 174 4.081697 AGGGGTGTGCATGCTTTTAATAAC 60.082 41.667 20.33 6.41 0.00 1.89
174 175 4.093011 AGGGGTGTGCATGCTTTTAATAA 58.907 39.130 20.33 0.00 0.00 1.40
175 176 3.699038 GAGGGGTGTGCATGCTTTTAATA 59.301 43.478 20.33 0.00 0.00 0.98
176 177 2.497273 GAGGGGTGTGCATGCTTTTAAT 59.503 45.455 20.33 0.00 0.00 1.40
177 178 1.892474 GAGGGGTGTGCATGCTTTTAA 59.108 47.619 20.33 0.00 0.00 1.52
178 179 1.202989 TGAGGGGTGTGCATGCTTTTA 60.203 47.619 20.33 0.00 0.00 1.52
179 180 0.469705 TGAGGGGTGTGCATGCTTTT 60.470 50.000 20.33 0.00 0.00 2.27
180 181 0.251922 ATGAGGGGTGTGCATGCTTT 60.252 50.000 20.33 0.00 0.00 3.51
181 182 0.682209 GATGAGGGGTGTGCATGCTT 60.682 55.000 20.33 0.00 0.00 3.91
182 183 1.077212 GATGAGGGGTGTGCATGCT 60.077 57.895 20.33 0.00 0.00 3.79
183 184 1.077212 AGATGAGGGGTGTGCATGC 60.077 57.895 11.82 11.82 0.00 4.06
184 185 0.545171 AGAGATGAGGGGTGTGCATG 59.455 55.000 0.00 0.00 0.00 4.06
185 186 1.293062 AAGAGATGAGGGGTGTGCAT 58.707 50.000 0.00 0.00 0.00 3.96
186 187 1.951209 TAAGAGATGAGGGGTGTGCA 58.049 50.000 0.00 0.00 0.00 4.57
187 188 3.209410 CAATAAGAGATGAGGGGTGTGC 58.791 50.000 0.00 0.00 0.00 4.57
188 189 3.200825 ACCAATAAGAGATGAGGGGTGTG 59.799 47.826 0.00 0.00 0.00 3.82
189 190 3.464828 ACCAATAAGAGATGAGGGGTGT 58.535 45.455 0.00 0.00 0.00 4.16
190 191 4.080356 TCAACCAATAAGAGATGAGGGGTG 60.080 45.833 0.00 0.00 32.98 4.61
191 192 4.111577 TCAACCAATAAGAGATGAGGGGT 58.888 43.478 0.00 0.00 0.00 4.95
192 193 4.778213 TCAACCAATAAGAGATGAGGGG 57.222 45.455 0.00 0.00 0.00 4.79
193 194 7.456725 ACATATCAACCAATAAGAGATGAGGG 58.543 38.462 0.00 0.00 35.26 4.30
194 195 8.152898 TGACATATCAACCAATAAGAGATGAGG 58.847 37.037 0.00 0.00 35.26 3.86
195 196 9.551734 TTGACATATCAACCAATAAGAGATGAG 57.448 33.333 0.00 0.00 40.01 2.90
196 197 9.551734 CTTGACATATCAACCAATAAGAGATGA 57.448 33.333 0.00 0.00 40.01 2.92
197 198 9.551734 TCTTGACATATCAACCAATAAGAGATG 57.448 33.333 0.00 0.00 40.01 2.90
199 200 9.958180 TTTCTTGACATATCAACCAATAAGAGA 57.042 29.630 0.00 0.00 40.01 3.10
200 201 9.994432 GTTTCTTGACATATCAACCAATAAGAG 57.006 33.333 0.00 0.00 40.01 2.85
201 202 9.513906 TGTTTCTTGACATATCAACCAATAAGA 57.486 29.630 0.00 0.00 40.01 2.10
204 205 9.513906 TCTTGTTTCTTGACATATCAACCAATA 57.486 29.630 0.00 0.00 40.01 1.90
205 206 8.408043 TCTTGTTTCTTGACATATCAACCAAT 57.592 30.769 0.00 0.00 40.01 3.16
206 207 7.815840 TCTTGTTTCTTGACATATCAACCAA 57.184 32.000 0.00 0.00 40.01 3.67
207 208 7.815840 TTCTTGTTTCTTGACATATCAACCA 57.184 32.000 0.00 0.00 40.01 3.67
208 209 7.323656 CGTTTCTTGTTTCTTGACATATCAACC 59.676 37.037 0.00 0.00 40.01 3.77
209 210 8.067784 TCGTTTCTTGTTTCTTGACATATCAAC 58.932 33.333 0.00 0.00 40.01 3.18
210 211 8.148807 TCGTTTCTTGTTTCTTGACATATCAA 57.851 30.769 0.00 0.00 42.73 2.57
211 212 7.095229 CCTCGTTTCTTGTTTCTTGACATATCA 60.095 37.037 0.00 0.00 0.00 2.15
212 213 7.095187 ACCTCGTTTCTTGTTTCTTGACATATC 60.095 37.037 0.00 0.00 0.00 1.63
213 214 6.710744 ACCTCGTTTCTTGTTTCTTGACATAT 59.289 34.615 0.00 0.00 0.00 1.78
214 215 6.053005 ACCTCGTTTCTTGTTTCTTGACATA 58.947 36.000 0.00 0.00 0.00 2.29
215 216 4.881850 ACCTCGTTTCTTGTTTCTTGACAT 59.118 37.500 0.00 0.00 0.00 3.06
216 217 4.258543 ACCTCGTTTCTTGTTTCTTGACA 58.741 39.130 0.00 0.00 0.00 3.58
217 218 4.877323 ACCTCGTTTCTTGTTTCTTGAC 57.123 40.909 0.00 0.00 0.00 3.18
218 219 5.909477 TCTACCTCGTTTCTTGTTTCTTGA 58.091 37.500 0.00 0.00 0.00 3.02
219 220 6.258068 ACTTCTACCTCGTTTCTTGTTTCTTG 59.742 38.462 0.00 0.00 0.00 3.02
220 221 6.346896 ACTTCTACCTCGTTTCTTGTTTCTT 58.653 36.000 0.00 0.00 0.00 2.52
221 222 5.915175 ACTTCTACCTCGTTTCTTGTTTCT 58.085 37.500 0.00 0.00 0.00 2.52
222 223 6.600246 AACTTCTACCTCGTTTCTTGTTTC 57.400 37.500 0.00 0.00 0.00 2.78
223 224 8.557029 CATTAACTTCTACCTCGTTTCTTGTTT 58.443 33.333 0.00 0.00 0.00 2.83
224 225 7.307811 GCATTAACTTCTACCTCGTTTCTTGTT 60.308 37.037 0.00 0.00 0.00 2.83
225 226 6.147328 GCATTAACTTCTACCTCGTTTCTTGT 59.853 38.462 0.00 0.00 0.00 3.16
226 227 6.147164 TGCATTAACTTCTACCTCGTTTCTTG 59.853 38.462 0.00 0.00 0.00 3.02
227 228 6.147328 GTGCATTAACTTCTACCTCGTTTCTT 59.853 38.462 0.00 0.00 0.00 2.52
228 229 5.638234 GTGCATTAACTTCTACCTCGTTTCT 59.362 40.000 0.00 0.00 0.00 2.52
229 230 5.163884 GGTGCATTAACTTCTACCTCGTTTC 60.164 44.000 0.00 0.00 0.00 2.78
230 231 4.694037 GGTGCATTAACTTCTACCTCGTTT 59.306 41.667 0.00 0.00 0.00 3.60
231 232 4.251268 GGTGCATTAACTTCTACCTCGTT 58.749 43.478 0.00 0.00 0.00 3.85
232 233 3.675228 CGGTGCATTAACTTCTACCTCGT 60.675 47.826 0.00 0.00 0.00 4.18
233 234 2.858344 CGGTGCATTAACTTCTACCTCG 59.142 50.000 0.00 0.00 0.00 4.63
234 235 2.608090 GCGGTGCATTAACTTCTACCTC 59.392 50.000 0.00 0.00 0.00 3.85
235 236 2.629051 GCGGTGCATTAACTTCTACCT 58.371 47.619 0.00 0.00 0.00 3.08
236 237 1.326548 CGCGGTGCATTAACTTCTACC 59.673 52.381 0.00 0.00 0.00 3.18
237 238 1.267383 GCGCGGTGCATTAACTTCTAC 60.267 52.381 8.83 0.00 45.45 2.59
238 239 1.003851 GCGCGGTGCATTAACTTCTA 58.996 50.000 8.83 0.00 45.45 2.10
239 240 1.794222 GCGCGGTGCATTAACTTCT 59.206 52.632 8.83 0.00 45.45 2.85
240 241 4.360101 GCGCGGTGCATTAACTTC 57.640 55.556 8.83 0.00 45.45 3.01
249 250 2.125202 AAAACACTAAGGCGCGGTGC 62.125 55.000 8.83 4.64 45.38 5.01
250 251 0.385473 CAAAACACTAAGGCGCGGTG 60.385 55.000 8.83 9.75 37.05 4.94
251 252 1.512156 CCAAAACACTAAGGCGCGGT 61.512 55.000 8.83 0.00 0.00 5.68
252 253 1.209127 CCAAAACACTAAGGCGCGG 59.791 57.895 8.83 0.00 0.00 6.46
253 254 1.209127 CCCAAAACACTAAGGCGCG 59.791 57.895 0.00 0.00 0.00 6.86
254 255 1.173913 ATCCCAAAACACTAAGGCGC 58.826 50.000 0.00 0.00 0.00 6.53
255 256 5.576447 AATAATCCCAAAACACTAAGGCG 57.424 39.130 0.00 0.00 0.00 5.52
256 257 6.106003 CCAAATAATCCCAAAACACTAAGGC 58.894 40.000 0.00 0.00 0.00 4.35
257 258 7.239763 ACCAAATAATCCCAAAACACTAAGG 57.760 36.000 0.00 0.00 0.00 2.69
258 259 9.554395 AAAACCAAATAATCCCAAAACACTAAG 57.446 29.630 0.00 0.00 0.00 2.18
259 260 9.549078 GAAAACCAAATAATCCCAAAACACTAA 57.451 29.630 0.00 0.00 0.00 2.24
260 261 7.868415 CGAAAACCAAATAATCCCAAAACACTA 59.132 33.333 0.00 0.00 0.00 2.74
261 262 6.704050 CGAAAACCAAATAATCCCAAAACACT 59.296 34.615 0.00 0.00 0.00 3.55
262 263 6.480651 ACGAAAACCAAATAATCCCAAAACAC 59.519 34.615 0.00 0.00 0.00 3.32
263 264 6.583562 ACGAAAACCAAATAATCCCAAAACA 58.416 32.000 0.00 0.00 0.00 2.83
264 265 8.590719 TTACGAAAACCAAATAATCCCAAAAC 57.409 30.769 0.00 0.00 0.00 2.43
265 266 8.639761 TCTTACGAAAACCAAATAATCCCAAAA 58.360 29.630 0.00 0.00 0.00 2.44
266 267 8.179509 TCTTACGAAAACCAAATAATCCCAAA 57.820 30.769 0.00 0.00 0.00 3.28
267 268 7.762588 TCTTACGAAAACCAAATAATCCCAA 57.237 32.000 0.00 0.00 0.00 4.12
268 269 7.612244 TCATCTTACGAAAACCAAATAATCCCA 59.388 33.333 0.00 0.00 0.00 4.37
269 270 7.913821 GTCATCTTACGAAAACCAAATAATCCC 59.086 37.037 0.00 0.00 0.00 3.85
270 271 8.674607 AGTCATCTTACGAAAACCAAATAATCC 58.325 33.333 0.00 0.00 0.00 3.01
286 287 7.068348 TCCATCTAGGTGTGTAAGTCATCTTAC 59.932 40.741 1.52 10.12 45.02 2.34
287 288 7.123383 TCCATCTAGGTGTGTAAGTCATCTTA 58.877 38.462 1.52 0.00 39.02 2.10
288 289 5.958380 TCCATCTAGGTGTGTAAGTCATCTT 59.042 40.000 1.52 0.00 39.02 2.40
289 290 5.519808 TCCATCTAGGTGTGTAAGTCATCT 58.480 41.667 1.52 0.00 39.02 2.90
290 291 5.221342 CCTCCATCTAGGTGTGTAAGTCATC 60.221 48.000 1.52 0.00 39.02 2.92
291 292 4.651503 CCTCCATCTAGGTGTGTAAGTCAT 59.348 45.833 1.52 0.00 39.02 3.06
292 293 4.023980 CCTCCATCTAGGTGTGTAAGTCA 58.976 47.826 1.52 0.00 39.02 3.41
293 294 3.385111 CCCTCCATCTAGGTGTGTAAGTC 59.615 52.174 1.52 0.00 39.02 3.01
294 295 3.012502 TCCCTCCATCTAGGTGTGTAAGT 59.987 47.826 1.52 0.00 39.02 2.24
295 296 3.639094 CTCCCTCCATCTAGGTGTGTAAG 59.361 52.174 1.52 0.00 39.02 2.34
296 297 3.012502 ACTCCCTCCATCTAGGTGTGTAA 59.987 47.826 1.52 0.00 39.02 2.41
297 298 2.585900 ACTCCCTCCATCTAGGTGTGTA 59.414 50.000 1.52 0.00 39.02 2.90
298 299 1.362932 ACTCCCTCCATCTAGGTGTGT 59.637 52.381 1.52 0.00 39.02 3.72
299 300 2.166907 ACTCCCTCCATCTAGGTGTG 57.833 55.000 1.52 0.00 39.02 3.82
300 301 2.423088 CGTACTCCCTCCATCTAGGTGT 60.423 54.545 1.52 0.00 39.02 4.16
301 302 2.231529 CGTACTCCCTCCATCTAGGTG 58.768 57.143 0.00 0.00 39.02 4.00
302 303 1.851653 ACGTACTCCCTCCATCTAGGT 59.148 52.381 0.00 0.00 39.02 3.08
303 304 2.660670 ACGTACTCCCTCCATCTAGG 57.339 55.000 0.00 0.00 39.47 3.02
304 305 4.040706 ACTCTACGTACTCCCTCCATCTAG 59.959 50.000 0.00 0.00 0.00 2.43
305 306 3.972638 ACTCTACGTACTCCCTCCATCTA 59.027 47.826 0.00 0.00 0.00 1.98
306 307 2.778850 ACTCTACGTACTCCCTCCATCT 59.221 50.000 0.00 0.00 0.00 2.90
307 308 2.879646 CACTCTACGTACTCCCTCCATC 59.120 54.545 0.00 0.00 0.00 3.51
308 309 2.423088 CCACTCTACGTACTCCCTCCAT 60.423 54.545 0.00 0.00 0.00 3.41
309 310 1.064906 CCACTCTACGTACTCCCTCCA 60.065 57.143 0.00 0.00 0.00 3.86
310 311 1.064832 ACCACTCTACGTACTCCCTCC 60.065 57.143 0.00 0.00 0.00 4.30
311 312 2.093021 AGACCACTCTACGTACTCCCTC 60.093 54.545 0.00 0.00 0.00 4.30
312 313 1.914798 AGACCACTCTACGTACTCCCT 59.085 52.381 0.00 0.00 0.00 4.20
313 314 2.287769 GAGACCACTCTACGTACTCCC 58.712 57.143 0.00 0.00 39.78 4.30
314 315 2.093021 AGGAGACCACTCTACGTACTCC 60.093 54.545 15.00 15.00 42.28 3.85
315 316 3.264998 AGGAGACCACTCTACGTACTC 57.735 52.381 0.00 0.00 42.28 2.59
316 317 3.717452 AAGGAGACCACTCTACGTACT 57.283 47.619 0.00 0.00 42.28 2.73
317 318 4.009002 AGAAAGGAGACCACTCTACGTAC 58.991 47.826 0.00 0.00 42.28 3.67
318 319 4.298103 AGAAAGGAGACCACTCTACGTA 57.702 45.455 0.00 0.00 42.28 3.57
319 320 3.157750 AGAAAGGAGACCACTCTACGT 57.842 47.619 0.00 0.00 42.28 3.57
320 321 4.522722 AAAGAAAGGAGACCACTCTACG 57.477 45.455 0.00 0.00 42.28 3.51
376 377 8.797215 CCACGCGCGTTATATATAACTAATTAA 58.203 33.333 35.90 0.00 40.27 1.40
377 378 7.967854 ACCACGCGCGTTATATATAACTAATTA 59.032 33.333 35.90 0.00 40.27 1.40
378 379 6.808212 ACCACGCGCGTTATATATAACTAATT 59.192 34.615 35.90 1.35 40.27 1.40
379 380 6.252015 CACCACGCGCGTTATATATAACTAAT 59.748 38.462 35.90 1.82 40.27 1.73
437 438 0.523072 CTTTGGAGGTGCACCATTCG 59.477 55.000 36.39 15.87 37.26 3.34
480 481 2.773487 CTGTCACGTACCCATGGAAAA 58.227 47.619 15.22 0.00 0.00 2.29
481 482 1.609580 GCTGTCACGTACCCATGGAAA 60.610 52.381 15.22 0.00 0.00 3.13
489 490 2.128035 GCTATGATGCTGTCACGTACC 58.872 52.381 0.00 0.00 40.28 3.34
553 555 8.223769 GGATGATTGAATTAATACACGCACTAG 58.776 37.037 0.00 0.00 0.00 2.57
710 729 9.738832 GTTCTGATTCTTTGGAGTACTAGTATC 57.261 37.037 5.75 5.04 0.00 2.24
711 730 9.482175 AGTTCTGATTCTTTGGAGTACTAGTAT 57.518 33.333 5.75 0.00 0.00 2.12
743 768 4.514441 CAGCTATTGTATTTGGCCTCTCTG 59.486 45.833 3.32 0.00 0.00 3.35
760 785 3.838244 TTTCCTTGGCGATACAGCTAT 57.162 42.857 0.00 0.00 37.29 2.97
785 810 3.059733 CGTAGCACCAGATCGAGTACTAC 60.060 52.174 14.14 14.14 31.99 2.73
786 811 3.129109 CGTAGCACCAGATCGAGTACTA 58.871 50.000 0.00 0.00 0.00 1.82
787 812 1.941294 CGTAGCACCAGATCGAGTACT 59.059 52.381 0.00 0.00 0.00 2.73
936 965 5.163405 GCAGGTATGATCAAGAGGTTGACTA 60.163 44.000 0.00 0.00 45.58 2.59
937 966 4.383552 GCAGGTATGATCAAGAGGTTGACT 60.384 45.833 0.00 0.00 45.58 3.41
941 970 2.743183 GCGCAGGTATGATCAAGAGGTT 60.743 50.000 0.30 0.00 0.00 3.50
944 973 2.522836 AGCGCAGGTATGATCAAGAG 57.477 50.000 11.47 0.00 35.08 2.85
962 991 4.215399 TCTCACCGTCCTAAATTGCAAAAG 59.785 41.667 1.71 1.26 0.00 2.27
968 997 3.334691 TGCTTCTCACCGTCCTAAATTG 58.665 45.455 0.00 0.00 0.00 2.32
1112 1141 6.237861 GCGATGACCAGTAATAGTGAGTTTTC 60.238 42.308 0.00 0.00 0.00 2.29
1121 1165 5.690997 TCAGTAGCGATGACCAGTAATAG 57.309 43.478 0.00 0.00 0.00 1.73
1122 1166 6.567891 CGAATCAGTAGCGATGACCAGTAATA 60.568 42.308 0.00 0.00 0.00 0.98
1124 1168 4.497507 CGAATCAGTAGCGATGACCAGTAA 60.498 45.833 0.00 0.00 0.00 2.24
1177 1221 5.263968 TCGATCCCAAGAACAGTTAGATC 57.736 43.478 0.00 0.00 0.00 2.75
1224 1271 2.292103 AGCTCTCGAAGATGAAGTGC 57.708 50.000 0.00 0.00 33.89 4.40
1230 1277 2.031807 CCATGCAAAGCTCTCGAAGATG 59.968 50.000 0.00 0.00 33.89 2.90
1286 1333 2.875933 TGATGGTTCACCGTTTGTTCTC 59.124 45.455 0.00 0.00 39.43 2.87
1349 1402 4.504461 CGGATCAGACAAATTTCTAGGACG 59.496 45.833 0.00 0.00 0.00 4.79
1389 1442 0.321034 TTGCTCAGCTGCGACAGAAT 60.321 50.000 9.47 0.00 32.44 2.40
1413 1482 0.598419 CGCGCATAGCTCTCCATTGA 60.598 55.000 8.75 0.00 45.59 2.57
1437 1506 4.678396 CGGCGAAGTACCGTACTC 57.322 61.111 11.66 5.17 45.70 2.59
1457 1526 0.103208 CCTCTAGGTAGCACTTGCCG 59.897 60.000 0.00 0.00 43.38 5.69
1641 1720 2.738480 CCTTGTCGTCCCACCGAA 59.262 61.111 0.00 0.00 38.80 4.30
1642 1721 3.998672 GCCTTGTCGTCCCACCGA 61.999 66.667 0.00 0.00 33.79 4.69
1645 1724 3.998672 TCGGCCTTGTCGTCCCAC 61.999 66.667 0.00 0.00 30.45 4.61
1685 1764 4.457496 CCAGGCGTCGCACCATCT 62.457 66.667 20.50 3.08 0.00 2.90
1810 1902 1.581934 TGCACAAAAGTCGGTCTGAG 58.418 50.000 0.00 0.00 0.00 3.35
1820 1912 4.558538 AGTCTTGTAGCTTGCACAAAAG 57.441 40.909 0.00 0.00 35.57 2.27
2009 2125 4.020485 TCAGATATCCAGATCAGGTGCATG 60.020 45.833 3.80 0.00 0.00 4.06
2052 2170 0.177836 TATGCTGGTGACATCCGTGG 59.822 55.000 0.00 0.00 41.51 4.94
2111 2229 6.052360 TGTACAAATTAAGCCTCGATGCATA 58.948 36.000 15.26 4.47 0.00 3.14
2161 2279 8.635765 AAGCTTAGATGTGACATCCTTAAAAA 57.364 30.769 21.05 6.46 0.00 1.94
2162 2280 8.635765 AAAGCTTAGATGTGACATCCTTAAAA 57.364 30.769 21.05 8.00 0.00 1.52
2163 2281 7.882791 TGAAAGCTTAGATGTGACATCCTTAAA 59.117 33.333 21.05 10.18 0.00 1.52
2164 2282 7.334421 GTGAAAGCTTAGATGTGACATCCTTAA 59.666 37.037 21.05 13.11 0.00 1.85
2165 2283 6.818644 GTGAAAGCTTAGATGTGACATCCTTA 59.181 38.462 21.05 6.22 0.00 2.69
2166 2284 5.645497 GTGAAAGCTTAGATGTGACATCCTT 59.355 40.000 21.05 14.02 0.00 3.36
2167 2285 5.181748 GTGAAAGCTTAGATGTGACATCCT 58.818 41.667 21.05 8.88 0.00 3.24
2168 2286 4.937620 TGTGAAAGCTTAGATGTGACATCC 59.062 41.667 21.05 6.69 0.00 3.51
2169 2287 6.486253 TTGTGAAAGCTTAGATGTGACATC 57.514 37.500 17.46 17.46 0.00 3.06
2170 2288 6.882610 TTTGTGAAAGCTTAGATGTGACAT 57.117 33.333 0.00 0.00 0.00 3.06
2171 2289 6.882610 ATTTGTGAAAGCTTAGATGTGACA 57.117 33.333 0.00 0.00 0.00 3.58
2178 2296 9.341078 TGCATCATATATTTGTGAAAGCTTAGA 57.659 29.630 0.00 0.00 32.79 2.10
2179 2297 9.955208 TTGCATCATATATTTGTGAAAGCTTAG 57.045 29.630 0.00 0.00 32.79 2.18
2180 2298 9.734620 GTTGCATCATATATTTGTGAAAGCTTA 57.265 29.630 0.00 0.00 32.79 3.09
2181 2299 8.252417 TGTTGCATCATATATTTGTGAAAGCTT 58.748 29.630 0.00 0.00 32.79 3.74
2182 2300 7.774134 TGTTGCATCATATATTTGTGAAAGCT 58.226 30.769 10.20 0.00 32.79 3.74
2183 2301 7.990541 TGTTGCATCATATATTTGTGAAAGC 57.009 32.000 0.00 4.64 32.46 3.51
2229 2347 8.091449 TGTTCACTTTGTTTGTGGTCTATTTTT 58.909 29.630 0.00 0.00 36.21 1.94
2230 2348 7.607250 TGTTCACTTTGTTTGTGGTCTATTTT 58.393 30.769 0.00 0.00 36.21 1.82
2231 2349 7.164230 TGTTCACTTTGTTTGTGGTCTATTT 57.836 32.000 0.00 0.00 36.21 1.40
2232 2350 6.767524 TGTTCACTTTGTTTGTGGTCTATT 57.232 33.333 0.00 0.00 36.21 1.73
2233 2351 6.545666 TGATGTTCACTTTGTTTGTGGTCTAT 59.454 34.615 0.00 0.00 36.21 1.98
2234 2352 5.883115 TGATGTTCACTTTGTTTGTGGTCTA 59.117 36.000 0.00 0.00 36.21 2.59
2235 2353 4.704540 TGATGTTCACTTTGTTTGTGGTCT 59.295 37.500 0.00 0.00 36.21 3.85
2236 2354 4.992688 TGATGTTCACTTTGTTTGTGGTC 58.007 39.130 0.00 0.00 36.21 4.02
2237 2355 4.462483 ACTGATGTTCACTTTGTTTGTGGT 59.538 37.500 0.00 0.00 36.21 4.16
2238 2356 4.997565 ACTGATGTTCACTTTGTTTGTGG 58.002 39.130 0.00 0.00 36.21 4.17
2239 2357 6.949578 AAACTGATGTTCACTTTGTTTGTG 57.050 33.333 0.00 0.00 34.96 3.33
2240 2358 8.050778 TCTAAACTGATGTTCACTTTGTTTGT 57.949 30.769 0.00 0.00 34.96 2.83
2241 2359 8.961092 CATCTAAACTGATGTTCACTTTGTTTG 58.039 33.333 0.00 0.00 39.05 2.93
2254 2372 9.809096 ACTAGTTATGTCACATCTAAACTGATG 57.191 33.333 12.82 7.06 46.61 3.07
2256 2374 9.020731 TGACTAGTTATGTCACATCTAAACTGA 57.979 33.333 12.82 0.33 39.23 3.41
2268 2386 6.822170 ACGTCTAGATGTGACTAGTTATGTCA 59.178 38.462 16.90 0.00 41.48 3.58
2269 2387 7.249186 ACGTCTAGATGTGACTAGTTATGTC 57.751 40.000 16.90 0.00 40.26 3.06
2282 2400 4.081031 TCTGTCTAGGACACGTCTAGATGT 60.081 45.833 11.99 11.99 43.25 3.06
2283 2401 4.271533 GTCTGTCTAGGACACGTCTAGATG 59.728 50.000 13.69 10.54 43.25 2.90
2284 2402 4.444536 GTCTGTCTAGGACACGTCTAGAT 58.555 47.826 13.69 0.00 43.25 1.98
2285 2403 3.369261 GGTCTGTCTAGGACACGTCTAGA 60.369 52.174 8.07 8.07 37.67 2.43
2286 2404 2.937799 GGTCTGTCTAGGACACGTCTAG 59.062 54.545 3.90 3.90 37.67 2.43
2287 2405 2.355513 GGGTCTGTCTAGGACACGTCTA 60.356 54.545 0.00 0.00 37.67 2.59
2288 2406 1.613785 GGGTCTGTCTAGGACACGTCT 60.614 57.143 0.00 0.00 37.67 4.18
2289 2407 0.810016 GGGTCTGTCTAGGACACGTC 59.190 60.000 0.00 0.00 37.67 4.34
2290 2408 0.404812 AGGGTCTGTCTAGGACACGT 59.595 55.000 0.00 0.00 41.50 4.49
2291 2409 2.414994 TAGGGTCTGTCTAGGACACG 57.585 55.000 0.00 0.00 41.50 4.49
2292 2410 5.046520 ACAAATTAGGGTCTGTCTAGGACAC 60.047 44.000 0.00 0.00 37.67 3.67
2293 2411 5.091552 ACAAATTAGGGTCTGTCTAGGACA 58.908 41.667 0.43 0.43 40.50 4.02
2294 2412 5.678955 ACAAATTAGGGTCTGTCTAGGAC 57.321 43.478 0.00 0.00 0.00 3.85
2295 2413 9.090103 CATATACAAATTAGGGTCTGTCTAGGA 57.910 37.037 0.00 0.00 0.00 2.94
2296 2414 8.314751 CCATATACAAATTAGGGTCTGTCTAGG 58.685 40.741 0.00 0.00 0.00 3.02
2297 2415 8.871125 ACCATATACAAATTAGGGTCTGTCTAG 58.129 37.037 0.00 0.00 0.00 2.43
2298 2416 8.792830 ACCATATACAAATTAGGGTCTGTCTA 57.207 34.615 0.00 0.00 0.00 2.59
2299 2417 7.202102 GGACCATATACAAATTAGGGTCTGTCT 60.202 40.741 12.57 0.00 42.22 3.41
2300 2418 6.935208 GGACCATATACAAATTAGGGTCTGTC 59.065 42.308 12.57 0.00 42.22 3.51
2301 2419 6.183361 GGGACCATATACAAATTAGGGTCTGT 60.183 42.308 12.57 0.00 42.22 3.41
2302 2420 6.183361 TGGGACCATATACAAATTAGGGTCTG 60.183 42.308 12.57 0.00 42.22 3.51
2303 2421 5.914716 TGGGACCATATACAAATTAGGGTCT 59.085 40.000 12.57 0.00 42.22 3.85
2304 2422 6.195600 TGGGACCATATACAAATTAGGGTC 57.804 41.667 6.09 6.09 41.93 4.46
2305 2423 6.796867 ATGGGACCATATACAAATTAGGGT 57.203 37.500 1.09 0.00 34.49 4.34
2306 2424 7.695055 TGTATGGGACCATATACAAATTAGGG 58.305 38.462 13.73 0.00 40.49 3.53
2307 2425 9.177608 CATGTATGGGACCATATACAAATTAGG 57.822 37.037 18.96 6.79 41.52 2.69
2308 2426 9.739276 ACATGTATGGGACCATATACAAATTAG 57.261 33.333 18.96 11.90 41.52 1.73
2311 2429 9.685276 CATACATGTATGGGACCATATACAAAT 57.315 33.333 30.40 14.10 41.52 2.32
2312 2430 8.664992 ACATACATGTATGGGACCATATACAAA 58.335 33.333 36.83 11.41 45.36 2.83
2313 2431 8.213489 ACATACATGTATGGGACCATATACAA 57.787 34.615 36.83 3.38 45.36 2.41
2314 2432 7.806680 ACATACATGTATGGGACCATATACA 57.193 36.000 36.83 17.93 45.36 2.29
2338 2456 8.482128 AGATTGGGAAACAAAAACTGAACAATA 58.518 29.630 0.00 0.00 43.46 1.90
2340 2458 6.706295 AGATTGGGAAACAAAAACTGAACAA 58.294 32.000 0.00 0.00 43.46 2.83
2346 2464 5.897250 AGTGGTAGATTGGGAAACAAAAACT 59.103 36.000 0.00 0.00 43.46 2.66
2360 2478 6.430000 GTGTTCATTGTGGTAAGTGGTAGATT 59.570 38.462 0.00 0.00 0.00 2.40
2427 2545 2.369203 TGTCCTAACGATCCAACCACAA 59.631 45.455 0.00 0.00 0.00 3.33
2434 2552 7.255836 CCAAGATACTATTGTCCTAACGATCCA 60.256 40.741 0.00 0.00 31.65 3.41
2439 2557 4.989168 GCCCAAGATACTATTGTCCTAACG 59.011 45.833 0.00 0.00 0.00 3.18
2449 2567 2.915604 CCTGATGGGCCCAAGATACTAT 59.084 50.000 32.58 9.87 0.00 2.12
2513 2631 0.455815 AAAGCATCGCCGAAATTCCC 59.544 50.000 0.00 0.00 0.00 3.97
2548 2666 1.944024 ACCTTGCAATCGACGAAAACA 59.056 42.857 0.00 0.00 0.00 2.83
2553 2671 3.561429 GCACCTTGCAATCGACGA 58.439 55.556 0.00 0.00 44.26 4.20
2562 2680 1.968540 GTCACCTGAGGCACCTTGC 60.969 63.158 0.00 0.00 44.08 4.01
2605 2723 0.236187 CCGAGAGACTTAGCCGATCG 59.764 60.000 8.51 8.51 0.00 3.69
2614 2732 1.550327 TGAGCACATCCGAGAGACTT 58.450 50.000 0.00 0.00 0.00 3.01
2649 2767 1.613255 CCCCCTATGAACACACACACC 60.613 57.143 0.00 0.00 0.00 4.16
2669 2787 6.208797 TGCTCATATATACACAGGTACACTCC 59.791 42.308 0.00 0.00 30.94 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.