Multiple sequence alignment - TraesCS3D01G472100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G472100 chr3D 100.000 3752 0 0 1 3752 574227695 574231446 0.000000e+00 6929.0
1 TraesCS3D01G472100 chr3D 87.322 1475 167 11 1014 2471 574238496 574239967 0.000000e+00 1670.0
2 TraesCS3D01G472100 chr3A 92.861 1975 97 19 540 2492 709162447 709164399 0.000000e+00 2826.0
3 TraesCS3D01G472100 chr3A 87.164 1488 167 14 1003 2471 709189969 709191451 0.000000e+00 1668.0
4 TraesCS3D01G472100 chr3A 93.990 416 18 6 3342 3752 709164781 709165194 1.140000e-174 623.0
5 TraesCS3D01G472100 chr3A 85.817 416 32 9 33 424 709161956 709162368 2.080000e-112 416.0
6 TraesCS3D01G472100 chr3A 95.142 247 9 1 2489 2735 709164509 709164752 1.630000e-103 387.0
7 TraesCS3D01G472100 chrUn 92.394 1696 93 17 824 2490 183979543 183981231 0.000000e+00 2385.0
8 TraesCS3D01G472100 chrUn 87.188 1483 170 11 1006 2471 41228537 41227058 0.000000e+00 1668.0
9 TraesCS3D01G472100 chrUn 83.507 479 52 17 445 910 183978825 183979289 4.480000e-114 422.0
10 TraesCS3D01G472100 chrUn 86.747 249 19 6 2728 2974 183981628 183981864 7.990000e-67 265.0
11 TraesCS3D01G472100 chrUn 84.733 262 21 11 1 258 183978460 183978706 1.040000e-60 244.0
12 TraesCS3D01G472100 chrUn 83.936 249 16 13 2489 2726 183981337 183981572 2.270000e-52 217.0
13 TraesCS3D01G472100 chrUn 93.333 60 1 2 3191 3248 183981936 183981994 6.680000e-13 86.1
14 TraesCS3D01G472100 chr7A 85.887 248 23 5 2489 2725 642888515 642888761 1.730000e-63 254.0
15 TraesCS3D01G472100 chr7A 90.323 93 7 2 2735 2826 642888832 642888923 1.830000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G472100 chr3D 574227695 574231446 3751 False 6929.000000 6929 100.000000 1 3752 1 chr3D.!!$F1 3751
1 TraesCS3D01G472100 chr3D 574238496 574239967 1471 False 1670.000000 1670 87.322000 1014 2471 1 chr3D.!!$F2 1457
2 TraesCS3D01G472100 chr3A 709189969 709191451 1482 False 1668.000000 1668 87.164000 1003 2471 1 chr3A.!!$F1 1468
3 TraesCS3D01G472100 chr3A 709161956 709165194 3238 False 1063.000000 2826 91.952500 33 3752 4 chr3A.!!$F2 3719
4 TraesCS3D01G472100 chrUn 41227058 41228537 1479 True 1668.000000 1668 87.188000 1006 2471 1 chrUn.!!$R1 1465
5 TraesCS3D01G472100 chrUn 183978460 183981994 3534 False 603.183333 2385 87.441667 1 3248 6 chrUn.!!$F1 3247

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
493 532 0.106369 TCTTCGCGGGGAGGATTAGA 60.106 55.0 6.13 0.0 0.0 2.10 F
1267 1712 1.287730 CTGTCGAGTCACCAAGCTGC 61.288 60.0 0.00 0.0 0.0 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1596 2041 0.109342 CCTCTCTGGTGTTGCCACTT 59.891 55.0 0.0 0.0 43.61 3.16 R
3054 3702 0.033504 ACGGCATTCTTCGTCACACT 59.966 50.0 0.0 0.0 34.20 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.613358 AAATAGAAAGAAGTGTCCTTGCG 57.387 39.130 0.00 0.00 0.00 4.85
24 25 1.884235 AGAAAGAAGTGTCCTTGCGG 58.116 50.000 0.00 0.00 0.00 5.69
25 26 0.238553 GAAAGAAGTGTCCTTGCGGC 59.761 55.000 0.00 0.00 0.00 6.53
131 136 1.982938 CCCTCCGAGTTTCTCCCGT 60.983 63.158 0.00 0.00 0.00 5.28
142 147 0.393402 TTCTCCCGTCGGATTCGAGA 60.393 55.000 14.39 13.13 46.91 4.04
147 152 2.842995 CGTCGGATTCGAGAAGACG 58.157 57.895 16.07 16.07 46.91 4.18
157 163 0.179171 CGAGAAGACGCCGAGCTTTA 60.179 55.000 0.00 0.00 0.00 1.85
240 246 0.734942 AGGTAACAACATCGGTCGCG 60.735 55.000 0.00 0.00 41.41 5.87
266 272 4.538738 TCCTCTTCCCTTCTAGCTAGTTC 58.461 47.826 20.10 0.00 0.00 3.01
273 279 7.569111 TCTTCCCTTCTAGCTAGTTCCATTATT 59.431 37.037 20.10 0.00 0.00 1.40
274 280 7.067496 TCCCTTCTAGCTAGTTCCATTATTG 57.933 40.000 20.10 0.75 0.00 1.90
284 290 7.985184 AGCTAGTTCCATTATTGTCGTGAATTA 59.015 33.333 0.00 0.00 0.00 1.40
294 300 9.661563 ATTATTGTCGTGAATTACTAGTTTCCA 57.338 29.630 0.00 0.00 0.00 3.53
304 310 6.793505 ATTACTAGTTTCCACTTCCGATCT 57.206 37.500 0.00 0.00 34.06 2.75
323 350 4.034258 GTCCGTGTCGCTGGTCGA 62.034 66.667 0.00 0.00 46.29 4.20
343 370 1.243902 TTTGAGGCGTGTTTGATCCC 58.756 50.000 0.00 0.00 0.00 3.85
349 376 1.721487 CGTGTTTGATCCCATCGGC 59.279 57.895 0.00 0.00 0.00 5.54
362 389 0.811616 CATCGGCTTTTCGGGGAGAG 60.812 60.000 0.00 0.00 0.00 3.20
368 395 1.861982 CTTTTCGGGGAGAGGGTAGA 58.138 55.000 0.00 0.00 0.00 2.59
372 399 1.219824 TCGGGGAGAGGGTAGAGGTT 61.220 60.000 0.00 0.00 0.00 3.50
378 405 2.423088 GGAGAGGGTAGAGGTTCGATCA 60.423 54.545 0.00 0.00 0.00 2.92
379 406 3.492337 GAGAGGGTAGAGGTTCGATCAT 58.508 50.000 0.00 0.00 0.00 2.45
426 453 4.003788 CTGGCACCCGTTCCGTCT 62.004 66.667 0.00 0.00 0.00 4.18
433 460 4.016706 CCGTTCCGTCTGCCCCTT 62.017 66.667 0.00 0.00 0.00 3.95
434 461 2.742372 CGTTCCGTCTGCCCCTTG 60.742 66.667 0.00 0.00 0.00 3.61
435 462 2.359975 GTTCCGTCTGCCCCTTGG 60.360 66.667 0.00 0.00 0.00 3.61
436 463 2.852075 TTCCGTCTGCCCCTTGGT 60.852 61.111 0.00 0.00 0.00 3.67
437 464 2.457323 TTCCGTCTGCCCCTTGGTT 61.457 57.895 0.00 0.00 0.00 3.67
438 465 2.359975 CCGTCTGCCCCTTGGTTC 60.360 66.667 0.00 0.00 0.00 3.62
439 466 2.750350 CGTCTGCCCCTTGGTTCT 59.250 61.111 0.00 0.00 0.00 3.01
440 467 1.073199 CGTCTGCCCCTTGGTTCTT 59.927 57.895 0.00 0.00 0.00 2.52
443 470 2.039418 GTCTGCCCCTTGGTTCTTTTT 58.961 47.619 0.00 0.00 0.00 1.94
493 532 0.106369 TCTTCGCGGGGAGGATTAGA 60.106 55.000 6.13 0.00 0.00 2.10
509 548 7.201893 GGAGGATTAGACCAGTTACGACTTTAT 60.202 40.741 0.00 0.00 32.54 1.40
515 554 3.259876 ACCAGTTACGACTTTATCCAGCA 59.740 43.478 0.00 0.00 32.54 4.41
520 559 3.678056 ACGACTTTATCCAGCAGTGAA 57.322 42.857 0.00 0.00 0.00 3.18
532 571 2.426024 CAGCAGTGAATTTCCATGGGAG 59.574 50.000 13.02 0.00 31.21 4.30
537 580 4.708421 CAGTGAATTTCCATGGGAGACATT 59.292 41.667 13.02 0.00 37.84 2.71
540 583 4.951715 TGAATTTCCATGGGAGACATTGAG 59.048 41.667 13.02 0.00 37.84 3.02
562 606 2.098934 GTGATGGATTTGGCGTGCAATA 59.901 45.455 0.00 0.00 0.00 1.90
563 607 2.957680 TGATGGATTTGGCGTGCAATAT 59.042 40.909 0.00 0.00 0.00 1.28
564 608 3.384146 TGATGGATTTGGCGTGCAATATT 59.616 39.130 0.00 0.00 0.00 1.28
583 627 6.857777 ATATTTCTTTGCCAGATCTTCTCG 57.142 37.500 0.00 0.00 0.00 4.04
584 628 3.961480 TTCTTTGCCAGATCTTCTCGA 57.039 42.857 0.00 0.00 0.00 4.04
616 660 2.095567 CGTGTCTGAATTTTGGGAGCAG 60.096 50.000 0.00 0.00 0.00 4.24
630 674 2.224378 GGGAGCAGTCATTATGCAGCTA 60.224 50.000 6.54 0.00 46.31 3.32
634 678 4.626042 AGCAGTCATTATGCAGCTAGTAC 58.374 43.478 0.00 0.00 46.31 2.73
697 762 8.353684 ACTAATACTCCTGTAATCATCAACTCG 58.646 37.037 0.00 0.00 31.80 4.18
726 791 5.519808 TGGTCTCTGATCTTGTATGGTACT 58.480 41.667 0.00 0.00 0.00 2.73
730 795 7.231722 GGTCTCTGATCTTGTATGGTACTGTAT 59.768 40.741 0.00 0.00 0.00 2.29
731 796 9.286170 GTCTCTGATCTTGTATGGTACTGTATA 57.714 37.037 0.00 0.00 0.00 1.47
793 865 6.319658 TCTGTGCTCTGTCTGAAAAAGATTTT 59.680 34.615 0.00 0.00 37.23 1.82
811 883 6.479884 AGATTTTATGTTCAGTGCCTCTCTT 58.520 36.000 0.00 0.00 0.00 2.85
829 1242 4.021016 TCTCTTACTCTTGTCTTTGGCCTC 60.021 45.833 3.32 0.00 0.00 4.70
836 1249 4.023291 TCTTGTCTTTGGCCTCAAGTTTT 58.977 39.130 3.32 0.00 38.53 2.43
838 1251 5.654650 TCTTGTCTTTGGCCTCAAGTTTTTA 59.345 36.000 3.32 0.00 38.53 1.52
843 1256 6.423905 GTCTTTGGCCTCAAGTTTTTAAATCC 59.576 38.462 3.32 0.00 33.98 3.01
847 1260 6.988522 TGGCCTCAAGTTTTTAAATCCTTAC 58.011 36.000 3.32 0.00 0.00 2.34
848 1261 6.780522 TGGCCTCAAGTTTTTAAATCCTTACT 59.219 34.615 3.32 0.00 0.00 2.24
850 1263 8.799367 GGCCTCAAGTTTTTAAATCCTTACTAA 58.201 33.333 0.00 0.00 0.00 2.24
865 1278 9.687210 AATCCTTACTAATTTTTCAACGTTTCC 57.313 29.630 0.00 0.00 0.00 3.13
882 1295 5.354234 ACGTTTCCCTTTGATTATGTAGCAG 59.646 40.000 0.00 0.00 0.00 4.24
885 1298 7.065324 CGTTTCCCTTTGATTATGTAGCAGTTA 59.935 37.037 0.00 0.00 0.00 2.24
909 1322 5.760253 ACTACCTGCAATTATATGTCAGCAC 59.240 40.000 0.00 0.00 0.00 4.40
972 1394 9.573166 TGAATGTTCATATACCTTATTCTTGGG 57.427 33.333 0.00 0.00 31.01 4.12
1045 1468 3.687212 TGGAATAACATGTTACACAGCCG 59.313 43.478 20.26 0.00 0.00 5.52
1110 1543 7.630082 TGTTCTATTTTATAGGTGAAGGCAGT 58.370 34.615 0.00 0.00 0.00 4.40
1147 1592 4.435518 CCAATGTGGATAACGACAAGAACG 60.436 45.833 0.00 0.00 40.96 3.95
1179 1624 6.091437 GTGGAAATTCAAGAAGCTGATCAAG 58.909 40.000 0.00 0.00 0.00 3.02
1267 1712 1.287730 CTGTCGAGTCACCAAGCTGC 61.288 60.000 0.00 0.00 0.00 5.25
1375 1820 4.992381 AAGTTGAAGCTGTACAATCGAC 57.008 40.909 12.34 12.34 0.00 4.20
1386 1831 1.892209 ACAATCGACTTCCCACCAAC 58.108 50.000 0.00 0.00 0.00 3.77
1596 2041 1.546099 GGGACGCTTTTTGGAACCCTA 60.546 52.381 0.00 0.00 33.79 3.53
1650 2095 5.567037 TCTCTGTTGATCTCCCAAAGAAA 57.433 39.130 0.00 0.00 37.61 2.52
1692 2137 0.672401 CACTTCGCTTTTCCCGCCTA 60.672 55.000 0.00 0.00 0.00 3.93
1944 2389 5.528043 TTGAGATATCTGCTGAAGTCCTC 57.472 43.478 10.74 3.55 0.00 3.71
2257 2702 1.529010 CTGCTGGAGTGGTTTGCCA 60.529 57.895 0.00 0.00 43.73 4.92
2307 2752 3.056179 TGGAGCTCATCACGAACAATACA 60.056 43.478 17.19 0.00 0.00 2.29
2330 2775 2.239150 AGCAAGGATCTCAGTTCTGCAT 59.761 45.455 0.00 0.00 0.00 3.96
2494 3052 2.528041 AGACTGGAACCAGAACGTTC 57.472 50.000 25.03 20.71 46.30 3.95
2542 3100 5.462398 GCAAGACGAGAAGACTAAAGAAACA 59.538 40.000 0.00 0.00 0.00 2.83
2794 3418 8.790718 GTCTGTTGATCTGATATGGCAATATTT 58.209 33.333 0.00 0.00 0.00 1.40
2795 3419 9.358406 TCTGTTGATCTGATATGGCAATATTTT 57.642 29.630 0.00 0.00 0.00 1.82
2812 3436 2.977772 TTTTGTTCACTTGGCCTTGG 57.022 45.000 3.32 0.00 0.00 3.61
2855 3480 7.921786 TTGCTGATTTATTTGCTACTGTAGT 57.078 32.000 15.71 0.00 0.00 2.73
2856 3481 7.921786 TGCTGATTTATTTGCTACTGTAGTT 57.078 32.000 15.71 2.67 0.00 2.24
2857 3482 8.335532 TGCTGATTTATTTGCTACTGTAGTTT 57.664 30.769 15.71 2.36 0.00 2.66
2858 3483 8.792633 TGCTGATTTATTTGCTACTGTAGTTTT 58.207 29.630 15.71 2.67 0.00 2.43
2859 3484 9.626045 GCTGATTTATTTGCTACTGTAGTTTTT 57.374 29.630 15.71 2.98 0.00 1.94
2888 3513 8.415950 TTTTTGCAAGATTACATTTCCCTAGA 57.584 30.769 0.00 0.00 0.00 2.43
2890 3515 8.593945 TTTGCAAGATTACATTTCCCTAGAAT 57.406 30.769 0.00 0.00 0.00 2.40
2912 3538 4.662468 TGTCTGCTGATCCTAGATTGTC 57.338 45.455 0.00 0.00 0.00 3.18
2913 3539 3.067320 TGTCTGCTGATCCTAGATTGTCG 59.933 47.826 0.00 0.00 0.00 4.35
2914 3540 2.625314 TCTGCTGATCCTAGATTGTCGG 59.375 50.000 0.00 0.00 0.00 4.79
2929 3555 5.920273 AGATTGTCGGTTTTTGCAAATACTG 59.080 36.000 26.51 26.51 0.00 2.74
2931 3557 4.355437 TGTCGGTTTTTGCAAATACTGTG 58.645 39.130 29.11 19.89 31.06 3.66
2933 3559 3.067461 TCGGTTTTTGCAAATACTGTGCT 59.933 39.130 29.11 0.00 42.69 4.40
2934 3560 3.182173 CGGTTTTTGCAAATACTGTGCTG 59.818 43.478 25.01 7.30 42.69 4.41
2935 3561 4.119136 GGTTTTTGCAAATACTGTGCTGT 58.881 39.130 25.34 0.00 42.69 4.40
2936 3562 4.570369 GGTTTTTGCAAATACTGTGCTGTT 59.430 37.500 25.34 0.00 42.69 3.16
2937 3563 5.064579 GGTTTTTGCAAATACTGTGCTGTTT 59.935 36.000 25.34 0.00 42.69 2.83
2938 3564 6.403092 GGTTTTTGCAAATACTGTGCTGTTTT 60.403 34.615 25.34 0.00 42.69 2.43
2948 3574 7.851822 ATACTGTGCTGTTTTAACAATTTCG 57.148 32.000 0.00 0.00 38.66 3.46
2956 3582 7.110511 GCTGTTTTAACAATTTCGTGAAACTG 58.889 34.615 2.54 2.54 38.66 3.16
3002 3650 3.758554 ACCAATTGCTATCAGTTGACCAC 59.241 43.478 0.00 0.00 40.93 4.16
3003 3651 4.012374 CCAATTGCTATCAGTTGACCACT 58.988 43.478 0.00 0.00 40.93 4.00
3004 3652 4.460382 CCAATTGCTATCAGTTGACCACTT 59.540 41.667 0.00 0.00 40.93 3.16
3005 3653 5.396484 CAATTGCTATCAGTTGACCACTTG 58.604 41.667 0.00 0.00 40.93 3.16
3006 3654 4.350368 TTGCTATCAGTTGACCACTTGA 57.650 40.909 0.00 0.00 30.92 3.02
3007 3655 3.664107 TGCTATCAGTTGACCACTTGAC 58.336 45.455 0.00 0.00 30.92 3.18
3008 3656 3.003480 GCTATCAGTTGACCACTTGACC 58.997 50.000 0.00 0.00 30.92 4.02
3009 3657 3.307059 GCTATCAGTTGACCACTTGACCT 60.307 47.826 0.00 0.00 30.92 3.85
3010 3658 4.081642 GCTATCAGTTGACCACTTGACCTA 60.082 45.833 0.00 0.00 30.92 3.08
3011 3659 5.395768 GCTATCAGTTGACCACTTGACCTAT 60.396 44.000 0.00 0.00 30.92 2.57
3012 3660 6.183360 GCTATCAGTTGACCACTTGACCTATA 60.183 42.308 0.00 0.00 30.92 1.31
3013 3661 6.814954 ATCAGTTGACCACTTGACCTATAT 57.185 37.500 0.00 0.00 30.92 0.86
3014 3662 7.914427 ATCAGTTGACCACTTGACCTATATA 57.086 36.000 0.00 0.00 30.92 0.86
3015 3663 7.914427 TCAGTTGACCACTTGACCTATATAT 57.086 36.000 0.00 0.00 30.92 0.86
3016 3664 9.601810 ATCAGTTGACCACTTGACCTATATATA 57.398 33.333 0.00 0.00 30.92 0.86
3017 3665 9.601810 TCAGTTGACCACTTGACCTATATATAT 57.398 33.333 0.00 0.00 30.92 0.86
3036 3684 0.688487 TATACCGCTACCATTGCCCC 59.312 55.000 0.00 0.00 0.00 5.80
3039 3687 2.589540 CGCTACCATTGCCCCTGA 59.410 61.111 0.00 0.00 0.00 3.86
3040 3688 1.819632 CGCTACCATTGCCCCTGAC 60.820 63.158 0.00 0.00 0.00 3.51
3042 3690 0.837272 GCTACCATTGCCCCTGACTA 59.163 55.000 0.00 0.00 0.00 2.59
3043 3691 1.211949 GCTACCATTGCCCCTGACTAA 59.788 52.381 0.00 0.00 0.00 2.24
3045 3693 3.072476 GCTACCATTGCCCCTGACTAATA 59.928 47.826 0.00 0.00 0.00 0.98
3046 3694 4.445735 GCTACCATTGCCCCTGACTAATAA 60.446 45.833 0.00 0.00 0.00 1.40
3047 3695 4.170468 ACCATTGCCCCTGACTAATAAG 57.830 45.455 0.00 0.00 0.00 1.73
3048 3696 3.785887 ACCATTGCCCCTGACTAATAAGA 59.214 43.478 0.00 0.00 0.00 2.10
3049 3697 4.416848 ACCATTGCCCCTGACTAATAAGAT 59.583 41.667 0.00 0.00 0.00 2.40
3050 3698 5.610982 ACCATTGCCCCTGACTAATAAGATA 59.389 40.000 0.00 0.00 0.00 1.98
3051 3699 6.275618 ACCATTGCCCCTGACTAATAAGATAT 59.724 38.462 0.00 0.00 0.00 1.63
3052 3700 7.177878 CCATTGCCCCTGACTAATAAGATATT 58.822 38.462 0.00 0.00 0.00 1.28
3053 3701 7.337942 CCATTGCCCCTGACTAATAAGATATTC 59.662 40.741 0.00 0.00 0.00 1.75
3054 3702 7.387265 TTGCCCCTGACTAATAAGATATTCA 57.613 36.000 0.00 0.00 0.00 2.57
3055 3703 7.009179 TGCCCCTGACTAATAAGATATTCAG 57.991 40.000 0.00 0.00 34.24 3.02
3056 3704 6.558775 TGCCCCTGACTAATAAGATATTCAGT 59.441 38.462 0.00 0.00 33.21 3.41
3057 3705 6.876257 GCCCCTGACTAATAAGATATTCAGTG 59.124 42.308 0.00 0.00 33.21 3.66
3058 3706 7.473511 GCCCCTGACTAATAAGATATTCAGTGT 60.474 40.741 0.00 0.00 33.21 3.55
3059 3707 7.875041 CCCCTGACTAATAAGATATTCAGTGTG 59.125 40.741 0.00 0.00 33.21 3.82
3060 3708 8.642432 CCCTGACTAATAAGATATTCAGTGTGA 58.358 37.037 0.00 0.00 33.21 3.58
3061 3709 9.469807 CCTGACTAATAAGATATTCAGTGTGAC 57.530 37.037 0.00 0.00 33.21 3.67
3062 3710 9.175060 CTGACTAATAAGATATTCAGTGTGACG 57.825 37.037 0.00 0.00 31.49 4.35
3063 3711 8.899771 TGACTAATAAGATATTCAGTGTGACGA 58.100 33.333 0.00 0.00 0.00 4.20
3064 3712 9.731819 GACTAATAAGATATTCAGTGTGACGAA 57.268 33.333 0.00 0.00 0.00 3.85
3065 3713 9.737427 ACTAATAAGATATTCAGTGTGACGAAG 57.263 33.333 0.00 0.00 0.00 3.79
3066 3714 9.952188 CTAATAAGATATTCAGTGTGACGAAGA 57.048 33.333 0.00 0.00 0.00 2.87
3068 3716 9.823647 AATAAGATATTCAGTGTGACGAAGAAT 57.176 29.630 0.00 0.00 33.82 2.40
3069 3717 7.531280 AAGATATTCAGTGTGACGAAGAATG 57.469 36.000 0.00 0.00 31.89 2.67
3070 3718 5.521735 AGATATTCAGTGTGACGAAGAATGC 59.478 40.000 0.00 0.00 31.89 3.56
3071 3719 1.795768 TCAGTGTGACGAAGAATGCC 58.204 50.000 0.00 0.00 0.00 4.40
3072 3720 0.439985 CAGTGTGACGAAGAATGCCG 59.560 55.000 0.00 0.00 0.00 5.69
3073 3721 0.033504 AGTGTGACGAAGAATGCCGT 59.966 50.000 0.00 0.00 42.17 5.68
3074 3722 0.865769 GTGTGACGAAGAATGCCGTT 59.134 50.000 0.00 0.00 39.30 4.44
3075 3723 0.865111 TGTGACGAAGAATGCCGTTG 59.135 50.000 0.00 0.00 39.30 4.10
3076 3724 0.165944 GTGACGAAGAATGCCGTTGG 59.834 55.000 0.00 0.00 39.30 3.77
3077 3725 0.250124 TGACGAAGAATGCCGTTGGT 60.250 50.000 0.00 0.00 39.30 3.67
3078 3726 0.165944 GACGAAGAATGCCGTTGGTG 59.834 55.000 0.00 0.00 39.30 4.17
3079 3727 1.154225 CGAAGAATGCCGTTGGTGC 60.154 57.895 0.00 0.00 0.00 5.01
3080 3728 1.851021 CGAAGAATGCCGTTGGTGCA 61.851 55.000 0.00 0.00 43.97 4.57
3085 3733 4.811206 TGCCGTTGGTGCATAAGT 57.189 50.000 0.00 0.00 32.85 2.24
3086 3734 2.252556 TGCCGTTGGTGCATAAGTG 58.747 52.632 0.00 0.00 32.85 3.16
3087 3735 0.250510 TGCCGTTGGTGCATAAGTGA 60.251 50.000 0.00 0.00 32.85 3.41
3088 3736 0.878416 GCCGTTGGTGCATAAGTGAA 59.122 50.000 0.00 0.00 0.00 3.18
3089 3737 1.135689 GCCGTTGGTGCATAAGTGAAG 60.136 52.381 0.00 0.00 0.00 3.02
3090 3738 2.151202 CCGTTGGTGCATAAGTGAAGT 58.849 47.619 0.00 0.00 0.00 3.01
3091 3739 2.159627 CCGTTGGTGCATAAGTGAAGTC 59.840 50.000 0.00 0.00 0.00 3.01
3092 3740 3.067106 CGTTGGTGCATAAGTGAAGTCT 58.933 45.455 0.00 0.00 0.00 3.24
3093 3741 3.498397 CGTTGGTGCATAAGTGAAGTCTT 59.502 43.478 0.00 0.00 0.00 3.01
3094 3742 4.377431 CGTTGGTGCATAAGTGAAGTCTTC 60.377 45.833 5.58 5.58 0.00 2.87
3095 3743 4.350368 TGGTGCATAAGTGAAGTCTTCA 57.650 40.909 11.36 11.36 37.33 3.02
3104 3752 2.820059 TGAAGTCTTCACAGCGTGAT 57.180 45.000 11.36 0.00 42.40 3.06
3105 3753 3.111853 TGAAGTCTTCACAGCGTGATT 57.888 42.857 11.36 4.25 42.40 2.57
3106 3754 2.802247 TGAAGTCTTCACAGCGTGATTG 59.198 45.455 11.36 8.34 42.40 2.67
3107 3755 1.800805 AGTCTTCACAGCGTGATTGG 58.199 50.000 11.23 6.43 42.40 3.16
3108 3756 0.798776 GTCTTCACAGCGTGATTGGG 59.201 55.000 11.23 4.57 42.40 4.12
3109 3757 0.396435 TCTTCACAGCGTGATTGGGT 59.604 50.000 11.23 0.00 42.40 4.51
3110 3758 0.798776 CTTCACAGCGTGATTGGGTC 59.201 55.000 11.23 0.00 42.40 4.46
3111 3759 0.605319 TTCACAGCGTGATTGGGTCC 60.605 55.000 11.23 0.00 42.40 4.46
3112 3760 1.302431 CACAGCGTGATTGGGTCCA 60.302 57.895 3.04 0.00 35.23 4.02
3113 3761 0.677731 CACAGCGTGATTGGGTCCAT 60.678 55.000 3.04 0.00 35.23 3.41
3114 3762 0.677731 ACAGCGTGATTGGGTCCATG 60.678 55.000 0.00 0.00 0.00 3.66
3115 3763 0.392863 CAGCGTGATTGGGTCCATGA 60.393 55.000 0.00 0.00 0.00 3.07
3116 3764 0.548031 AGCGTGATTGGGTCCATGAT 59.452 50.000 0.00 0.00 0.00 2.45
3117 3765 1.768275 AGCGTGATTGGGTCCATGATA 59.232 47.619 0.00 0.00 0.00 2.15
3118 3766 2.172505 AGCGTGATTGGGTCCATGATAA 59.827 45.455 0.00 0.00 0.00 1.75
3119 3767 2.549754 GCGTGATTGGGTCCATGATAAG 59.450 50.000 0.00 0.00 0.00 1.73
3120 3768 3.744214 GCGTGATTGGGTCCATGATAAGA 60.744 47.826 0.00 0.00 0.00 2.10
3121 3769 4.450976 CGTGATTGGGTCCATGATAAGAA 58.549 43.478 0.00 0.00 0.00 2.52
3122 3770 4.273480 CGTGATTGGGTCCATGATAAGAAC 59.727 45.833 0.00 0.00 0.00 3.01
3123 3771 4.580580 GTGATTGGGTCCATGATAAGAACC 59.419 45.833 0.00 0.00 40.53 3.62
3126 3774 4.879295 TGGGTCCATGATAAGAACCAAT 57.121 40.909 4.17 0.00 46.86 3.16
3127 3775 5.985175 TGGGTCCATGATAAGAACCAATA 57.015 39.130 4.17 0.00 46.86 1.90
3128 3776 6.334378 TGGGTCCATGATAAGAACCAATAA 57.666 37.500 4.17 0.00 46.86 1.40
3129 3777 6.921412 TGGGTCCATGATAAGAACCAATAAT 58.079 36.000 4.17 0.00 46.86 1.28
3130 3778 7.004086 TGGGTCCATGATAAGAACCAATAATC 58.996 38.462 4.17 0.00 46.86 1.75
3131 3779 7.004086 GGGTCCATGATAAGAACCAATAATCA 58.996 38.462 0.00 0.00 39.83 2.57
3132 3780 7.671398 GGGTCCATGATAAGAACCAATAATCAT 59.329 37.037 0.00 0.00 39.83 2.45
3133 3781 9.739276 GGTCCATGATAAGAACCAATAATCATA 57.261 33.333 0.00 0.00 35.61 2.15
3135 3783 9.739276 TCCATGATAAGAACCAATAATCATACC 57.261 33.333 0.00 0.00 35.61 2.73
3136 3784 9.745018 CCATGATAAGAACCAATAATCATACCT 57.255 33.333 0.00 0.00 35.61 3.08
3170 3818 8.861086 ACTATTAAGTGTCTCTTCTGTTTGAGA 58.139 33.333 0.00 0.00 37.56 3.27
3178 3826 6.961360 TCTCTTCTGTTTGAGACTACTTGA 57.039 37.500 0.00 0.00 34.77 3.02
3179 3827 7.348080 TCTCTTCTGTTTGAGACTACTTGAA 57.652 36.000 0.00 0.00 34.77 2.69
3180 3828 7.203910 TCTCTTCTGTTTGAGACTACTTGAAC 58.796 38.462 0.00 0.00 34.77 3.18
3181 3829 7.068839 TCTCTTCTGTTTGAGACTACTTGAACT 59.931 37.037 0.00 0.00 34.77 3.01
3182 3830 7.556844 TCTTCTGTTTGAGACTACTTGAACTT 58.443 34.615 0.00 0.00 0.00 2.66
3183 3831 7.492669 TCTTCTGTTTGAGACTACTTGAACTTG 59.507 37.037 0.00 0.00 0.00 3.16
3184 3832 6.873997 TCTGTTTGAGACTACTTGAACTTGA 58.126 36.000 0.00 0.00 0.00 3.02
3185 3833 6.980978 TCTGTTTGAGACTACTTGAACTTGAG 59.019 38.462 0.00 0.00 0.00 3.02
3186 3834 6.640518 TGTTTGAGACTACTTGAACTTGAGT 58.359 36.000 0.00 0.00 0.00 3.41
3187 3835 7.103641 TGTTTGAGACTACTTGAACTTGAGTT 58.896 34.615 0.00 0.00 41.64 3.01
3188 3836 8.255206 TGTTTGAGACTACTTGAACTTGAGTTA 58.745 33.333 0.00 0.00 38.56 2.24
3189 3837 9.262358 GTTTGAGACTACTTGAACTTGAGTTAT 57.738 33.333 0.00 0.00 38.56 1.89
3190 3838 8.818141 TTGAGACTACTTGAACTTGAGTTATG 57.182 34.615 0.00 0.00 38.56 1.90
3191 3839 7.952671 TGAGACTACTTGAACTTGAGTTATGT 58.047 34.615 0.00 0.00 38.56 2.29
3192 3840 8.421784 TGAGACTACTTGAACTTGAGTTATGTT 58.578 33.333 0.00 0.00 38.56 2.71
3193 3841 9.262358 GAGACTACTTGAACTTGAGTTATGTTT 57.738 33.333 0.00 0.00 38.56 2.83
3194 3842 9.046296 AGACTACTTGAACTTGAGTTATGTTTG 57.954 33.333 0.00 0.00 38.56 2.93
3195 3843 8.732746 ACTACTTGAACTTGAGTTATGTTTGT 57.267 30.769 0.00 0.00 38.56 2.83
3196 3844 8.612619 ACTACTTGAACTTGAGTTATGTTTGTG 58.387 33.333 0.00 0.00 38.56 3.33
3197 3845 7.391148 ACTTGAACTTGAGTTATGTTTGTGT 57.609 32.000 0.00 0.00 38.56 3.72
3219 3869 9.344772 TGTGTTTGGTCATTACTATTGTTACTT 57.655 29.630 0.00 0.00 0.00 2.24
3248 3898 5.765176 TGCAGCATCTATATTTGAATGTGC 58.235 37.500 0.00 0.00 0.00 4.57
3249 3899 5.533528 TGCAGCATCTATATTTGAATGTGCT 59.466 36.000 0.00 0.00 41.88 4.40
3250 3900 6.711645 TGCAGCATCTATATTTGAATGTGCTA 59.288 34.615 0.00 0.00 39.43 3.49
3251 3901 7.392393 TGCAGCATCTATATTTGAATGTGCTAT 59.608 33.333 0.00 0.00 39.43 2.97
3252 3902 8.242053 GCAGCATCTATATTTGAATGTGCTATT 58.758 33.333 0.00 0.00 39.43 1.73
3253 3903 9.556030 CAGCATCTATATTTGAATGTGCTATTG 57.444 33.333 0.00 0.00 39.43 1.90
3254 3904 8.737175 AGCATCTATATTTGAATGTGCTATTGG 58.263 33.333 0.00 0.00 39.64 3.16
3255 3905 8.733458 GCATCTATATTTGAATGTGCTATTGGA 58.267 33.333 0.00 0.00 0.00 3.53
3262 3912 6.564709 TTGAATGTGCTATTGGATAGATGC 57.435 37.500 0.00 0.00 34.77 3.91
3263 3913 5.623169 TGAATGTGCTATTGGATAGATGCA 58.377 37.500 0.00 0.00 34.77 3.96
3264 3914 5.704053 TGAATGTGCTATTGGATAGATGCAG 59.296 40.000 0.00 0.00 34.77 4.41
3265 3915 4.694760 TGTGCTATTGGATAGATGCAGT 57.305 40.909 0.00 0.00 34.77 4.40
3266 3916 4.383173 TGTGCTATTGGATAGATGCAGTG 58.617 43.478 0.00 0.00 34.77 3.66
3267 3917 4.141642 TGTGCTATTGGATAGATGCAGTGT 60.142 41.667 0.00 0.00 34.77 3.55
3268 3918 4.212847 GTGCTATTGGATAGATGCAGTGTG 59.787 45.833 0.00 0.00 34.77 3.82
3269 3919 4.141642 TGCTATTGGATAGATGCAGTGTGT 60.142 41.667 0.00 0.00 34.77 3.72
3270 3920 4.450419 GCTATTGGATAGATGCAGTGTGTC 59.550 45.833 0.00 0.00 34.77 3.67
3271 3921 3.979101 TTGGATAGATGCAGTGTGTCA 57.021 42.857 0.00 0.00 0.00 3.58
3272 3922 4.492494 TTGGATAGATGCAGTGTGTCAT 57.508 40.909 0.00 0.00 0.00 3.06
3273 3923 4.063998 TGGATAGATGCAGTGTGTCATC 57.936 45.455 0.00 2.04 39.38 2.92
3274 3924 3.451902 TGGATAGATGCAGTGTGTCATCA 59.548 43.478 10.61 0.34 41.02 3.07
3275 3925 4.102054 TGGATAGATGCAGTGTGTCATCAT 59.898 41.667 10.61 4.07 41.02 2.45
3276 3926 5.305128 TGGATAGATGCAGTGTGTCATCATA 59.695 40.000 10.61 3.09 41.02 2.15
3277 3927 6.013984 TGGATAGATGCAGTGTGTCATCATAT 60.014 38.462 10.61 6.50 41.02 1.78
3278 3928 6.877855 GGATAGATGCAGTGTGTCATCATATT 59.122 38.462 10.61 0.00 41.02 1.28
3279 3929 7.389884 GGATAGATGCAGTGTGTCATCATATTT 59.610 37.037 10.61 0.00 41.02 1.40
3280 3930 6.373186 AGATGCAGTGTGTCATCATATTTG 57.627 37.500 10.61 0.00 41.02 2.32
3281 3931 6.117488 AGATGCAGTGTGTCATCATATTTGA 58.883 36.000 10.61 0.00 41.02 2.69
3282 3932 6.600427 AGATGCAGTGTGTCATCATATTTGAA 59.400 34.615 10.61 0.00 41.02 2.69
3283 3933 6.572167 TGCAGTGTGTCATCATATTTGAAA 57.428 33.333 0.00 0.00 34.96 2.69
3284 3934 7.160547 TGCAGTGTGTCATCATATTTGAAAT 57.839 32.000 0.00 0.00 34.96 2.17
3285 3935 8.278729 TGCAGTGTGTCATCATATTTGAAATA 57.721 30.769 0.00 0.00 34.96 1.40
3286 3936 8.738106 TGCAGTGTGTCATCATATTTGAAATAA 58.262 29.630 1.27 0.00 34.96 1.40
3287 3937 9.229784 GCAGTGTGTCATCATATTTGAAATAAG 57.770 33.333 1.27 0.00 34.96 1.73
3297 3947 9.793252 ATCATATTTGAAATAAGTCTGTTGTGC 57.207 29.630 1.27 0.00 34.96 4.57
3298 3948 7.962373 TCATATTTGAAATAAGTCTGTTGTGCG 59.038 33.333 1.27 0.00 0.00 5.34
3299 3949 5.493133 TTTGAAATAAGTCTGTTGTGCGT 57.507 34.783 0.00 0.00 0.00 5.24
3300 3950 5.493133 TTGAAATAAGTCTGTTGTGCGTT 57.507 34.783 0.00 0.00 0.00 4.84
3301 3951 5.090652 TGAAATAAGTCTGTTGTGCGTTC 57.909 39.130 0.00 0.00 0.00 3.95
3302 3952 4.572795 TGAAATAAGTCTGTTGTGCGTTCA 59.427 37.500 0.00 0.00 0.00 3.18
3303 3953 5.238432 TGAAATAAGTCTGTTGTGCGTTCAT 59.762 36.000 0.00 0.00 0.00 2.57
3304 3954 4.928661 ATAAGTCTGTTGTGCGTTCATC 57.071 40.909 0.00 0.00 0.00 2.92
3305 3955 2.533266 AGTCTGTTGTGCGTTCATCT 57.467 45.000 0.00 0.00 0.00 2.90
3306 3956 2.138320 AGTCTGTTGTGCGTTCATCTG 58.862 47.619 0.00 0.00 0.00 2.90
3307 3957 0.867746 TCTGTTGTGCGTTCATCTGC 59.132 50.000 0.00 0.00 0.00 4.26
3308 3958 0.110056 CTGTTGTGCGTTCATCTGCC 60.110 55.000 0.00 0.00 0.00 4.85
3309 3959 0.817229 TGTTGTGCGTTCATCTGCCA 60.817 50.000 0.00 0.00 0.00 4.92
3310 3960 0.523072 GTTGTGCGTTCATCTGCCAT 59.477 50.000 0.00 0.00 0.00 4.40
3311 3961 1.737236 GTTGTGCGTTCATCTGCCATA 59.263 47.619 0.00 0.00 0.00 2.74
3312 3962 1.655484 TGTGCGTTCATCTGCCATAG 58.345 50.000 0.00 0.00 0.00 2.23
3313 3963 0.305922 GTGCGTTCATCTGCCATAGC 59.694 55.000 0.00 0.00 40.48 2.97
3326 3976 3.760580 GCCATAGCAATAGTCCTGTCT 57.239 47.619 0.00 0.00 39.53 3.41
3327 3977 4.873746 GCCATAGCAATAGTCCTGTCTA 57.126 45.455 0.00 0.00 39.53 2.59
3328 3978 5.413309 GCCATAGCAATAGTCCTGTCTAT 57.587 43.478 0.00 0.00 39.53 1.98
3329 3979 5.799213 GCCATAGCAATAGTCCTGTCTATT 58.201 41.667 0.00 0.00 40.06 1.73
3330 3980 6.234177 GCCATAGCAATAGTCCTGTCTATTT 58.766 40.000 0.00 0.00 38.19 1.40
3331 3981 6.148480 GCCATAGCAATAGTCCTGTCTATTTG 59.852 42.308 0.00 0.00 38.19 2.32
3332 3982 6.652481 CCATAGCAATAGTCCTGTCTATTTGG 59.348 42.308 0.00 0.00 38.19 3.28
3333 3983 4.455606 AGCAATAGTCCTGTCTATTTGGC 58.544 43.478 0.00 0.00 38.19 4.52
3334 3984 3.565902 GCAATAGTCCTGTCTATTTGGCC 59.434 47.826 0.00 0.00 38.19 5.36
3335 3985 4.687219 GCAATAGTCCTGTCTATTTGGCCT 60.687 45.833 3.32 0.00 38.19 5.19
3336 3986 5.440610 CAATAGTCCTGTCTATTTGGCCTT 58.559 41.667 3.32 0.00 38.19 4.35
3337 3987 3.356529 AGTCCTGTCTATTTGGCCTTG 57.643 47.619 3.32 0.00 0.00 3.61
3338 3988 1.745653 GTCCTGTCTATTTGGCCTTGC 59.254 52.381 3.32 0.00 0.00 4.01
3339 3989 0.734889 CCTGTCTATTTGGCCTTGCG 59.265 55.000 3.32 0.00 0.00 4.85
3340 3990 1.453155 CTGTCTATTTGGCCTTGCGT 58.547 50.000 3.32 0.00 0.00 5.24
3341 3991 1.812571 CTGTCTATTTGGCCTTGCGTT 59.187 47.619 3.32 0.00 0.00 4.84
3342 3992 2.228822 CTGTCTATTTGGCCTTGCGTTT 59.771 45.455 3.32 0.00 0.00 3.60
3343 3993 2.625790 TGTCTATTTGGCCTTGCGTTTT 59.374 40.909 3.32 0.00 0.00 2.43
3344 3994 3.821600 TGTCTATTTGGCCTTGCGTTTTA 59.178 39.130 3.32 0.00 0.00 1.52
3345 3995 4.461081 TGTCTATTTGGCCTTGCGTTTTAT 59.539 37.500 3.32 0.00 0.00 1.40
3346 3996 5.047660 TGTCTATTTGGCCTTGCGTTTTATT 60.048 36.000 3.32 0.00 0.00 1.40
3347 3997 5.867174 GTCTATTTGGCCTTGCGTTTTATTT 59.133 36.000 3.32 0.00 0.00 1.40
3348 3998 5.866633 TCTATTTGGCCTTGCGTTTTATTTG 59.133 36.000 3.32 0.00 0.00 2.32
3349 3999 3.735237 TTGGCCTTGCGTTTTATTTGA 57.265 38.095 3.32 0.00 0.00 2.69
3350 4000 3.019933 TGGCCTTGCGTTTTATTTGAC 57.980 42.857 3.32 0.00 0.00 3.18
3351 4001 2.625790 TGGCCTTGCGTTTTATTTGACT 59.374 40.909 3.32 0.00 0.00 3.41
3352 4002 3.068873 TGGCCTTGCGTTTTATTTGACTT 59.931 39.130 3.32 0.00 0.00 3.01
3353 4003 4.055360 GGCCTTGCGTTTTATTTGACTTT 58.945 39.130 0.00 0.00 0.00 2.66
3423 4076 2.713967 GGCTTTGCATCCGCCATGT 61.714 57.895 14.40 0.00 43.25 3.21
3432 4085 1.987807 ATCCGCCATGTGCCTTAGCT 61.988 55.000 0.00 0.00 40.80 3.32
3440 4093 4.178540 CCATGTGCCTTAGCTCAATTTTG 58.821 43.478 0.00 0.00 44.96 2.44
3467 4120 6.173427 TCATCATGCCATTACTAAGCTACA 57.827 37.500 0.00 0.00 0.00 2.74
3588 4241 7.490962 TCGAATACAAGAAGAAACAACATGT 57.509 32.000 0.00 0.00 0.00 3.21
3600 4253 2.566913 ACAACATGTTACGCAAGGACA 58.433 42.857 11.53 0.00 46.39 4.02
3686 4340 4.046286 TGCTCCCATACTCCAATGTTTT 57.954 40.909 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.741476 CAGCTTGCTTGACCCGGC 61.741 66.667 0.00 0.00 0.00 6.13
25 26 2.281761 ACAGCTTGCTTGACCCGG 60.282 61.111 0.00 0.00 0.00 5.73
131 136 1.432251 GGCGTCTTCTCGAATCCGA 59.568 57.895 0.00 0.00 43.35 4.55
142 147 2.211353 GAGATAAAGCTCGGCGTCTT 57.789 50.000 6.85 9.04 0.00 3.01
240 246 1.686587 GCTAGAAGGGAAGAGGAGAGC 59.313 57.143 0.00 0.00 0.00 4.09
266 272 9.916397 GAAACTAGTAATTCACGACAATAATGG 57.084 33.333 0.00 0.00 0.00 3.16
273 279 6.092955 AGTGGAAACTAGTAATTCACGACA 57.907 37.500 12.16 0.00 0.00 4.35
274 280 6.090493 GGAAGTGGAAACTAGTAATTCACGAC 59.910 42.308 12.16 10.46 0.00 4.34
284 290 5.262804 ACTAGATCGGAAGTGGAAACTAGT 58.737 41.667 0.00 0.00 35.23 2.57
294 300 2.015587 GACACGGACTAGATCGGAAGT 58.984 52.381 0.00 1.05 0.00 3.01
304 310 2.683859 CGACCAGCGACACGGACTA 61.684 63.158 0.00 0.00 44.57 2.59
323 350 1.818674 GGGATCAAACACGCCTCAAAT 59.181 47.619 0.00 0.00 0.00 2.32
343 370 0.811616 CTCTCCCCGAAAAGCCGATG 60.812 60.000 0.00 0.00 0.00 3.84
349 376 1.757699 CTCTACCCTCTCCCCGAAAAG 59.242 57.143 0.00 0.00 0.00 2.27
362 389 1.270358 GCCATGATCGAACCTCTACCC 60.270 57.143 0.00 0.00 0.00 3.69
368 395 0.034059 GATCCGCCATGATCGAACCT 59.966 55.000 8.56 0.00 32.48 3.50
372 399 2.650778 CGGATCCGCCATGATCGA 59.349 61.111 23.37 0.00 41.71 3.59
420 447 2.852075 AACCAAGGGGCAGACGGA 60.852 61.111 0.00 0.00 37.90 4.69
422 449 0.537371 AAAGAACCAAGGGGCAGACG 60.537 55.000 0.00 0.00 37.90 4.18
424 451 2.470057 AAAAAGAACCAAGGGGCAGA 57.530 45.000 0.00 0.00 37.90 4.26
456 495 6.036083 CGCGAAGAGATTAATTTCTTTCCAGA 59.964 38.462 19.16 0.00 33.97 3.86
476 515 1.397390 GGTCTAATCCTCCCCGCGAA 61.397 60.000 8.23 0.00 0.00 4.70
493 532 3.259876 TGCTGGATAAAGTCGTAACTGGT 59.740 43.478 0.00 0.00 35.36 4.00
509 548 2.449464 CCATGGAAATTCACTGCTGGA 58.551 47.619 5.56 0.00 0.00 3.86
515 554 4.598036 ATGTCTCCCATGGAAATTCACT 57.402 40.909 15.22 0.00 30.69 3.41
520 559 3.270433 ACCTCAATGTCTCCCATGGAAAT 59.730 43.478 15.22 0.00 32.96 2.17
532 571 3.181483 GCCAAATCCATCACCTCAATGTC 60.181 47.826 0.00 0.00 0.00 3.06
537 580 0.327924 ACGCCAAATCCATCACCTCA 59.672 50.000 0.00 0.00 0.00 3.86
540 583 1.139520 GCACGCCAAATCCATCACC 59.860 57.895 0.00 0.00 0.00 4.02
562 606 4.633565 GTCGAGAAGATCTGGCAAAGAAAT 59.366 41.667 0.00 0.00 38.79 2.17
563 607 3.997021 GTCGAGAAGATCTGGCAAAGAAA 59.003 43.478 0.00 0.00 38.79 2.52
564 608 3.259374 AGTCGAGAAGATCTGGCAAAGAA 59.741 43.478 0.00 0.00 38.79 2.52
584 628 2.563261 TCAGACACGACTACCTGAGT 57.437 50.000 0.00 0.00 42.90 3.41
616 660 5.921408 GTGGTAGTACTAGCTGCATAATGAC 59.079 44.000 27.42 13.54 34.84 3.06
630 674 2.111255 TGTTCAGAGGGGTGGTAGTACT 59.889 50.000 0.00 0.00 0.00 2.73
634 678 1.909302 ACATGTTCAGAGGGGTGGTAG 59.091 52.381 0.00 0.00 0.00 3.18
697 762 6.708054 CCATACAAGATCAGAGACCAATAACC 59.292 42.308 0.00 0.00 0.00 2.85
747 817 9.175060 CACAGATAGTGTTCGTAAGATCATTAG 57.825 37.037 0.00 0.00 46.63 1.73
793 865 5.265191 AGAGTAAGAGAGGCACTGAACATA 58.735 41.667 0.00 0.00 41.55 2.29
811 883 3.391296 ACTTGAGGCCAAAGACAAGAGTA 59.609 43.478 21.44 0.00 41.16 2.59
843 1256 9.524106 AAAGGGAAACGTTGAAAAATTAGTAAG 57.476 29.630 0.00 0.00 38.67 2.34
847 1260 7.995463 TCAAAGGGAAACGTTGAAAAATTAG 57.005 32.000 0.00 0.00 43.10 1.73
865 1278 8.204836 AGGTAGTAACTGCTACATAATCAAAGG 58.795 37.037 7.20 0.00 42.18 3.11
882 1295 7.441157 TGCTGACATATAATTGCAGGTAGTAAC 59.559 37.037 0.00 0.00 0.00 2.50
885 1298 5.760253 GTGCTGACATATAATTGCAGGTAGT 59.240 40.000 0.00 0.00 0.00 2.73
970 1392 6.909909 ACGTCTTACAAATTTCATTCTTCCC 58.090 36.000 0.00 0.00 0.00 3.97
986 1408 9.562583 TGGCAATAAATAATCAAAACGTCTTAC 57.437 29.630 0.00 0.00 0.00 2.34
1045 1468 6.500041 AGAATGCTAATGAGAACGTCTAGAC 58.500 40.000 13.18 13.18 0.00 2.59
1083 1516 9.125026 CTGCCTTCACCTATAAAATAGAACATT 57.875 33.333 0.00 0.00 0.00 2.71
1129 1562 3.967080 GACGTTCTTGTCGTTATCCAC 57.033 47.619 0.00 0.00 41.64 4.02
1147 1592 5.672321 GCTTCTTGAATTTCCACATCTCGAC 60.672 44.000 0.00 0.00 0.00 4.20
1179 1624 0.807667 CACGGGCAGCATCTAGTCAC 60.808 60.000 0.00 0.00 0.00 3.67
1267 1712 1.283029 AGTCCCATGTTCATCACCCAG 59.717 52.381 0.00 0.00 0.00 4.45
1398 1843 0.321210 TGACAATGGTGCCGGTGTAG 60.321 55.000 1.90 0.00 0.00 2.74
1476 1921 2.531912 GTCACAGAGATACATGAACGCG 59.468 50.000 3.53 3.53 0.00 6.01
1596 2041 0.109342 CCTCTCTGGTGTTGCCACTT 59.891 55.000 0.00 0.00 43.61 3.16
1608 2053 4.954875 AGAACTTGTGAAGAACCTCTCTG 58.045 43.478 0.00 0.00 33.37 3.35
1650 2095 2.284625 TGCCCTCCTCGTCCATGT 60.285 61.111 0.00 0.00 0.00 3.21
1944 2389 5.005740 TCTTGGATGAACTTGACATTGGAG 58.994 41.667 0.00 0.00 0.00 3.86
2257 2702 4.616953 CAACCAAACTGCCGATAGTTTTT 58.383 39.130 12.40 5.41 45.85 1.94
2307 2752 2.093553 GCAGAACTGAGATCCTTGCTCT 60.094 50.000 5.97 0.00 33.57 4.09
2330 2775 0.570727 TCCTATCCCACCATAGCCCA 59.429 55.000 0.00 0.00 0.00 5.36
2512 3070 4.792521 AGTCTTCTCGTCTTGCTACAAT 57.207 40.909 0.00 0.00 0.00 2.71
2634 3199 9.766277 GATTCTTCTTGCTAAAAATGACAGTAG 57.234 33.333 0.00 0.00 0.00 2.57
2752 3376 7.609760 TCAACAGACGCACAATAGATTTTAT 57.390 32.000 0.00 0.00 0.00 1.40
2768 3392 7.918536 ATATTGCCATATCAGATCAACAGAC 57.081 36.000 0.00 0.00 0.00 3.51
2794 3418 2.151502 TCCAAGGCCAAGTGAACAAA 57.848 45.000 5.01 0.00 0.00 2.83
2795 3419 2.380064 ATCCAAGGCCAAGTGAACAA 57.620 45.000 5.01 0.00 0.00 2.83
2799 3423 2.380064 ACAAATCCAAGGCCAAGTGA 57.620 45.000 5.01 0.00 0.00 3.41
2812 3436 8.892887 TCAGCAAATTTTCAAACAAACAAATC 57.107 26.923 0.00 0.00 0.00 2.17
2863 3488 8.415950 TCTAGGGAAATGTAATCTTGCAAAAA 57.584 30.769 0.00 0.00 0.00 1.94
2869 3494 9.401058 AGACAATTCTAGGGAAATGTAATCTTG 57.599 33.333 0.33 0.00 43.22 3.02
2882 3507 3.390639 AGGATCAGCAGACAATTCTAGGG 59.609 47.826 0.00 0.00 0.00 3.53
2886 3511 6.126825 ACAATCTAGGATCAGCAGACAATTCT 60.127 38.462 0.00 0.00 0.00 2.40
2887 3512 6.054295 ACAATCTAGGATCAGCAGACAATTC 58.946 40.000 0.00 0.00 0.00 2.17
2888 3513 5.999044 ACAATCTAGGATCAGCAGACAATT 58.001 37.500 0.00 0.00 0.00 2.32
2890 3515 4.440663 CGACAATCTAGGATCAGCAGACAA 60.441 45.833 0.00 0.00 0.00 3.18
2912 3538 3.182173 CAGCACAGTATTTGCAAAAACCG 59.818 43.478 17.19 8.11 42.83 4.44
2913 3539 4.119136 ACAGCACAGTATTTGCAAAAACC 58.881 39.130 17.19 6.96 42.83 3.27
2914 3540 5.717038 AACAGCACAGTATTTGCAAAAAC 57.283 34.783 17.19 1.03 42.83 2.43
2929 3555 6.561945 TTCACGAAATTGTTAAAACAGCAC 57.438 33.333 0.00 0.00 40.50 4.40
2931 3557 7.110511 CAGTTTCACGAAATTGTTAAAACAGC 58.889 34.615 6.81 0.00 40.50 4.40
2933 3559 6.809196 AGCAGTTTCACGAAATTGTTAAAACA 59.191 30.769 14.18 0.00 39.34 2.83
2934 3560 7.008810 TGAGCAGTTTCACGAAATTGTTAAAAC 59.991 33.333 14.18 0.00 39.34 2.43
2935 3561 7.008810 GTGAGCAGTTTCACGAAATTGTTAAAA 59.991 33.333 14.18 0.00 39.34 1.52
2936 3562 6.470877 GTGAGCAGTTTCACGAAATTGTTAAA 59.529 34.615 14.18 1.57 39.34 1.52
2937 3563 5.968848 GTGAGCAGTTTCACGAAATTGTTAA 59.031 36.000 14.18 1.94 39.34 2.01
2938 3564 5.507077 GTGAGCAGTTTCACGAAATTGTTA 58.493 37.500 14.18 2.13 39.34 2.41
2948 3574 1.512926 ATGACCGTGAGCAGTTTCAC 58.487 50.000 0.00 0.00 43.14 3.18
2956 3582 1.364626 CCAGCTGAATGACCGTGAGC 61.365 60.000 17.39 0.00 0.00 4.26
2987 3635 3.003480 GGTCAAGTGGTCAACTGATAGC 58.997 50.000 0.00 0.00 39.81 2.97
3009 3657 8.974238 GGGCAATGGTAGCGGTATATATATATA 58.026 37.037 8.16 8.16 0.00 0.86
3010 3658 7.093024 GGGGCAATGGTAGCGGTATATATATAT 60.093 40.741 10.10 10.10 0.00 0.86
3011 3659 6.211986 GGGGCAATGGTAGCGGTATATATATA 59.788 42.308 0.00 0.00 0.00 0.86
3012 3660 5.012768 GGGGCAATGGTAGCGGTATATATAT 59.987 44.000 0.00 0.00 0.00 0.86
3013 3661 4.345837 GGGGCAATGGTAGCGGTATATATA 59.654 45.833 0.00 0.00 0.00 0.86
3014 3662 3.135895 GGGGCAATGGTAGCGGTATATAT 59.864 47.826 0.00 0.00 0.00 0.86
3015 3663 2.502538 GGGGCAATGGTAGCGGTATATA 59.497 50.000 0.00 0.00 0.00 0.86
3016 3664 1.280998 GGGGCAATGGTAGCGGTATAT 59.719 52.381 0.00 0.00 0.00 0.86
3017 3665 0.688487 GGGGCAATGGTAGCGGTATA 59.312 55.000 0.00 0.00 0.00 1.47
3027 3675 4.437682 TCTTATTAGTCAGGGGCAATGG 57.562 45.455 0.00 0.00 0.00 3.16
3036 3684 9.175060 CGTCACACTGAATATCTTATTAGTCAG 57.825 37.037 7.23 7.23 45.29 3.51
3039 3687 9.737427 CTTCGTCACACTGAATATCTTATTAGT 57.263 33.333 0.00 0.00 0.00 2.24
3040 3688 9.952188 TCTTCGTCACACTGAATATCTTATTAG 57.048 33.333 0.00 0.00 0.00 1.73
3042 3690 9.823647 ATTCTTCGTCACACTGAATATCTTATT 57.176 29.630 0.00 0.00 0.00 1.40
3043 3691 9.254133 CATTCTTCGTCACACTGAATATCTTAT 57.746 33.333 0.00 0.00 0.00 1.73
3045 3693 6.036517 GCATTCTTCGTCACACTGAATATCTT 59.963 38.462 0.00 0.00 0.00 2.40
3046 3694 5.521735 GCATTCTTCGTCACACTGAATATCT 59.478 40.000 0.00 0.00 0.00 1.98
3047 3695 5.277058 GGCATTCTTCGTCACACTGAATATC 60.277 44.000 0.00 0.00 0.00 1.63
3048 3696 4.572389 GGCATTCTTCGTCACACTGAATAT 59.428 41.667 0.00 0.00 0.00 1.28
3049 3697 3.932710 GGCATTCTTCGTCACACTGAATA 59.067 43.478 0.00 0.00 0.00 1.75
3050 3698 2.744202 GGCATTCTTCGTCACACTGAAT 59.256 45.455 0.00 0.00 0.00 2.57
3051 3699 2.143122 GGCATTCTTCGTCACACTGAA 58.857 47.619 0.00 0.00 0.00 3.02
3052 3700 1.795768 GGCATTCTTCGTCACACTGA 58.204 50.000 0.00 0.00 0.00 3.41
3053 3701 0.439985 CGGCATTCTTCGTCACACTG 59.560 55.000 0.00 0.00 0.00 3.66
3054 3702 0.033504 ACGGCATTCTTCGTCACACT 59.966 50.000 0.00 0.00 34.20 3.55
3055 3703 0.865769 AACGGCATTCTTCGTCACAC 59.134 50.000 0.00 0.00 38.78 3.82
3056 3704 0.865111 CAACGGCATTCTTCGTCACA 59.135 50.000 0.00 0.00 38.78 3.58
3057 3705 0.165944 CCAACGGCATTCTTCGTCAC 59.834 55.000 0.00 0.00 38.78 3.67
3058 3706 0.250124 ACCAACGGCATTCTTCGTCA 60.250 50.000 0.00 0.00 38.78 4.35
3059 3707 0.165944 CACCAACGGCATTCTTCGTC 59.834 55.000 0.00 0.00 38.78 4.20
3060 3708 1.852067 GCACCAACGGCATTCTTCGT 61.852 55.000 0.00 0.00 41.71 3.85
3061 3709 1.154225 GCACCAACGGCATTCTTCG 60.154 57.895 0.00 0.00 0.00 3.79
3062 3710 1.956043 TGCACCAACGGCATTCTTC 59.044 52.632 0.00 0.00 36.11 2.87
3063 3711 4.172625 TGCACCAACGGCATTCTT 57.827 50.000 0.00 0.00 36.11 2.52
3068 3716 0.250510 TCACTTATGCACCAACGGCA 60.251 50.000 0.00 0.00 46.66 5.69
3069 3717 0.878416 TTCACTTATGCACCAACGGC 59.122 50.000 0.00 0.00 0.00 5.68
3070 3718 2.151202 ACTTCACTTATGCACCAACGG 58.849 47.619 0.00 0.00 0.00 4.44
3071 3719 3.067106 AGACTTCACTTATGCACCAACG 58.933 45.455 0.00 0.00 0.00 4.10
3072 3720 4.515191 TGAAGACTTCACTTATGCACCAAC 59.485 41.667 13.99 0.00 34.08 3.77
3073 3721 4.713553 TGAAGACTTCACTTATGCACCAA 58.286 39.130 13.99 0.00 34.08 3.67
3074 3722 4.350368 TGAAGACTTCACTTATGCACCA 57.650 40.909 13.99 0.00 34.08 4.17
3085 3733 2.802247 CAATCACGCTGTGAAGACTTCA 59.198 45.455 13.99 13.99 45.96 3.02
3086 3734 2.158449 CCAATCACGCTGTGAAGACTTC 59.842 50.000 13.81 8.34 45.96 3.01
3087 3735 2.146342 CCAATCACGCTGTGAAGACTT 58.854 47.619 13.81 0.00 45.96 3.01
3088 3736 1.609061 CCCAATCACGCTGTGAAGACT 60.609 52.381 13.81 0.00 45.96 3.24
3089 3737 0.798776 CCCAATCACGCTGTGAAGAC 59.201 55.000 13.81 0.00 45.96 3.01
3090 3738 0.396435 ACCCAATCACGCTGTGAAGA 59.604 50.000 13.81 0.00 45.96 2.87
3091 3739 0.798776 GACCCAATCACGCTGTGAAG 59.201 55.000 13.81 10.09 45.96 3.02
3092 3740 0.605319 GGACCCAATCACGCTGTGAA 60.605 55.000 13.81 0.97 45.96 3.18
3093 3741 1.003839 GGACCCAATCACGCTGTGA 60.004 57.895 12.53 12.53 46.90 3.58
3094 3742 0.677731 ATGGACCCAATCACGCTGTG 60.678 55.000 0.00 2.79 34.45 3.66
3095 3743 0.677731 CATGGACCCAATCACGCTGT 60.678 55.000 0.00 0.00 0.00 4.40
3096 3744 0.392863 TCATGGACCCAATCACGCTG 60.393 55.000 0.00 0.00 0.00 5.18
3097 3745 0.548031 ATCATGGACCCAATCACGCT 59.452 50.000 0.00 0.00 0.00 5.07
3098 3746 2.254546 TATCATGGACCCAATCACGC 57.745 50.000 0.00 0.00 0.00 5.34
3099 3747 4.071961 TCTTATCATGGACCCAATCACG 57.928 45.455 0.00 0.00 0.00 4.35
3100 3748 4.580580 GGTTCTTATCATGGACCCAATCAC 59.419 45.833 0.00 0.00 0.00 3.06
3101 3749 4.229353 TGGTTCTTATCATGGACCCAATCA 59.771 41.667 0.00 0.00 0.00 2.57
3102 3750 4.792068 TGGTTCTTATCATGGACCCAATC 58.208 43.478 0.00 0.00 0.00 2.67
3103 3751 4.879295 TGGTTCTTATCATGGACCCAAT 57.121 40.909 0.00 0.00 0.00 3.16
3104 3752 4.666412 TTGGTTCTTATCATGGACCCAA 57.334 40.909 0.00 0.00 0.00 4.12
3105 3753 4.879295 ATTGGTTCTTATCATGGACCCA 57.121 40.909 0.00 0.00 0.00 4.51
3106 3754 7.004086 TGATTATTGGTTCTTATCATGGACCC 58.996 38.462 0.00 0.00 0.00 4.46
3107 3755 8.641498 ATGATTATTGGTTCTTATCATGGACC 57.359 34.615 0.00 0.00 35.31 4.46
3109 3757 9.739276 GGTATGATTATTGGTTCTTATCATGGA 57.261 33.333 0.00 0.00 36.79 3.41
3110 3758 9.745018 AGGTATGATTATTGGTTCTTATCATGG 57.255 33.333 0.00 0.00 36.79 3.66
3144 3792 8.861086 TCTCAAACAGAAGAGACACTTAATAGT 58.139 33.333 0.00 0.00 39.13 2.12
3155 3803 6.961360 TCAAGTAGTCTCAAACAGAAGAGA 57.039 37.500 0.00 0.00 38.49 3.10
3156 3804 7.206687 AGTTCAAGTAGTCTCAAACAGAAGAG 58.793 38.462 0.00 0.00 30.72 2.85
3157 3805 7.113658 AGTTCAAGTAGTCTCAAACAGAAGA 57.886 36.000 0.00 0.00 30.72 2.87
3158 3806 7.492669 TCAAGTTCAAGTAGTCTCAAACAGAAG 59.507 37.037 0.00 0.00 30.72 2.85
3159 3807 7.327975 TCAAGTTCAAGTAGTCTCAAACAGAA 58.672 34.615 0.00 0.00 30.72 3.02
3160 3808 6.873997 TCAAGTTCAAGTAGTCTCAAACAGA 58.126 36.000 0.00 0.00 0.00 3.41
3161 3809 6.758886 ACTCAAGTTCAAGTAGTCTCAAACAG 59.241 38.462 0.00 0.00 0.00 3.16
3162 3810 6.640518 ACTCAAGTTCAAGTAGTCTCAAACA 58.359 36.000 0.00 0.00 0.00 2.83
3163 3811 7.541122 AACTCAAGTTCAAGTAGTCTCAAAC 57.459 36.000 0.00 0.00 31.64 2.93
3164 3812 9.261180 CATAACTCAAGTTCAAGTAGTCTCAAA 57.739 33.333 0.00 0.00 39.31 2.69
3165 3813 8.421784 ACATAACTCAAGTTCAAGTAGTCTCAA 58.578 33.333 0.00 0.00 39.31 3.02
3166 3814 7.952671 ACATAACTCAAGTTCAAGTAGTCTCA 58.047 34.615 0.00 0.00 39.31 3.27
3167 3815 8.819643 AACATAACTCAAGTTCAAGTAGTCTC 57.180 34.615 0.00 0.00 39.31 3.36
3168 3816 9.046296 CAAACATAACTCAAGTTCAAGTAGTCT 57.954 33.333 0.00 0.00 39.31 3.24
3169 3817 8.827677 ACAAACATAACTCAAGTTCAAGTAGTC 58.172 33.333 0.00 0.00 39.31 2.59
3170 3818 8.612619 CACAAACATAACTCAAGTTCAAGTAGT 58.387 33.333 0.00 0.00 39.31 2.73
3171 3819 8.612619 ACACAAACATAACTCAAGTTCAAGTAG 58.387 33.333 0.00 0.00 39.31 2.57
3172 3820 8.500753 ACACAAACATAACTCAAGTTCAAGTA 57.499 30.769 0.00 0.00 39.31 2.24
3173 3821 7.391148 ACACAAACATAACTCAAGTTCAAGT 57.609 32.000 0.00 0.00 39.31 3.16
3174 3822 8.586273 CAAACACAAACATAACTCAAGTTCAAG 58.414 33.333 0.00 0.00 39.31 3.02
3175 3823 7.543868 CCAAACACAAACATAACTCAAGTTCAA 59.456 33.333 0.00 0.00 39.31 2.69
3176 3824 7.032580 CCAAACACAAACATAACTCAAGTTCA 58.967 34.615 0.00 0.00 39.31 3.18
3177 3825 7.033185 ACCAAACACAAACATAACTCAAGTTC 58.967 34.615 0.00 0.00 39.31 3.01
3178 3826 6.930731 ACCAAACACAAACATAACTCAAGTT 58.069 32.000 0.46 0.46 41.73 2.66
3179 3827 6.151985 TGACCAAACACAAACATAACTCAAGT 59.848 34.615 0.00 0.00 0.00 3.16
3180 3828 6.559810 TGACCAAACACAAACATAACTCAAG 58.440 36.000 0.00 0.00 0.00 3.02
3181 3829 6.516739 TGACCAAACACAAACATAACTCAA 57.483 33.333 0.00 0.00 0.00 3.02
3182 3830 6.707440 ATGACCAAACACAAACATAACTCA 57.293 33.333 0.00 0.00 0.00 3.41
3183 3831 8.349983 AGTAATGACCAAACACAAACATAACTC 58.650 33.333 0.00 0.00 0.00 3.01
3184 3832 8.232913 AGTAATGACCAAACACAAACATAACT 57.767 30.769 0.00 0.00 0.00 2.24
3188 3836 8.637986 ACAATAGTAATGACCAAACACAAACAT 58.362 29.630 0.00 0.00 0.00 2.71
3189 3837 8.001881 ACAATAGTAATGACCAAACACAAACA 57.998 30.769 0.00 0.00 0.00 2.83
3190 3838 8.865590 AACAATAGTAATGACCAAACACAAAC 57.134 30.769 0.00 0.00 0.00 2.93
3191 3839 9.953697 GTAACAATAGTAATGACCAAACACAAA 57.046 29.630 0.00 0.00 0.00 2.83
3192 3840 9.344772 AGTAACAATAGTAATGACCAAACACAA 57.655 29.630 0.00 0.00 0.00 3.33
3193 3841 8.911918 AGTAACAATAGTAATGACCAAACACA 57.088 30.769 0.00 0.00 0.00 3.72
3219 3869 7.806409 TTCAAATATAGATGCTGCAGCTAAA 57.194 32.000 36.61 19.72 35.96 1.85
3248 3898 5.604565 TGACACACTGCATCTATCCAATAG 58.395 41.667 0.00 0.00 0.00 1.73
3249 3899 5.612725 TGACACACTGCATCTATCCAATA 57.387 39.130 0.00 0.00 0.00 1.90
3250 3900 4.492494 TGACACACTGCATCTATCCAAT 57.508 40.909 0.00 0.00 0.00 3.16
3251 3901 3.979101 TGACACACTGCATCTATCCAA 57.021 42.857 0.00 0.00 0.00 3.53
3252 3902 3.451902 TGATGACACACTGCATCTATCCA 59.548 43.478 0.00 0.00 41.08 3.41
3253 3903 4.063998 TGATGACACACTGCATCTATCC 57.936 45.455 0.00 0.00 41.08 2.59
3254 3904 7.902387 AATATGATGACACACTGCATCTATC 57.098 36.000 0.00 0.00 41.08 2.08
3255 3905 7.935210 TCAAATATGATGACACACTGCATCTAT 59.065 33.333 0.00 0.00 41.08 1.98
3256 3906 7.274447 TCAAATATGATGACACACTGCATCTA 58.726 34.615 0.00 0.00 41.08 1.98
3257 3907 6.117488 TCAAATATGATGACACACTGCATCT 58.883 36.000 0.00 0.00 41.08 2.90
3258 3908 6.367686 TCAAATATGATGACACACTGCATC 57.632 37.500 0.00 0.00 40.92 3.91
3259 3909 6.762702 TTCAAATATGATGACACACTGCAT 57.237 33.333 0.00 0.00 34.96 3.96
3260 3910 6.572167 TTTCAAATATGATGACACACTGCA 57.428 33.333 0.00 0.00 34.96 4.41
3261 3911 9.229784 CTTATTTCAAATATGATGACACACTGC 57.770 33.333 0.00 0.00 34.96 4.40
3271 3921 9.793252 GCACAACAGACTTATTTCAAATATGAT 57.207 29.630 9.46 0.00 34.96 2.45
3272 3922 7.962373 CGCACAACAGACTTATTTCAAATATGA 59.038 33.333 9.46 0.00 0.00 2.15
3273 3923 7.750458 ACGCACAACAGACTTATTTCAAATATG 59.250 33.333 2.23 2.23 0.00 1.78
3274 3924 7.816640 ACGCACAACAGACTTATTTCAAATAT 58.183 30.769 0.00 0.00 0.00 1.28
3275 3925 7.197071 ACGCACAACAGACTTATTTCAAATA 57.803 32.000 0.00 0.00 0.00 1.40
3276 3926 6.072112 ACGCACAACAGACTTATTTCAAAT 57.928 33.333 0.00 0.00 0.00 2.32
3277 3927 5.493133 ACGCACAACAGACTTATTTCAAA 57.507 34.783 0.00 0.00 0.00 2.69
3278 3928 5.065346 TGAACGCACAACAGACTTATTTCAA 59.935 36.000 0.00 0.00 0.00 2.69
3279 3929 4.572795 TGAACGCACAACAGACTTATTTCA 59.427 37.500 0.00 0.00 0.00 2.69
3280 3930 5.090652 TGAACGCACAACAGACTTATTTC 57.909 39.130 0.00 0.00 0.00 2.17
3281 3931 5.470098 AGATGAACGCACAACAGACTTATTT 59.530 36.000 0.00 0.00 0.00 1.40
3282 3932 4.997395 AGATGAACGCACAACAGACTTATT 59.003 37.500 0.00 0.00 0.00 1.40
3283 3933 4.389992 CAGATGAACGCACAACAGACTTAT 59.610 41.667 0.00 0.00 0.00 1.73
3284 3934 3.740832 CAGATGAACGCACAACAGACTTA 59.259 43.478 0.00 0.00 0.00 2.24
3285 3935 2.545526 CAGATGAACGCACAACAGACTT 59.454 45.455 0.00 0.00 0.00 3.01
3286 3936 2.138320 CAGATGAACGCACAACAGACT 58.862 47.619 0.00 0.00 0.00 3.24
3287 3937 1.398960 GCAGATGAACGCACAACAGAC 60.399 52.381 0.00 0.00 0.00 3.51
3288 3938 0.867746 GCAGATGAACGCACAACAGA 59.132 50.000 0.00 0.00 0.00 3.41
3289 3939 0.110056 GGCAGATGAACGCACAACAG 60.110 55.000 0.00 0.00 0.00 3.16
3290 3940 0.817229 TGGCAGATGAACGCACAACA 60.817 50.000 0.00 0.00 0.00 3.33
3291 3941 0.523072 ATGGCAGATGAACGCACAAC 59.477 50.000 0.00 0.00 0.00 3.32
3292 3942 2.009051 CTATGGCAGATGAACGCACAA 58.991 47.619 0.00 0.00 0.00 3.33
3293 3943 1.655484 CTATGGCAGATGAACGCACA 58.345 50.000 0.00 0.00 0.00 4.57
3294 3944 0.305922 GCTATGGCAGATGAACGCAC 59.694 55.000 0.00 0.00 38.54 5.34
3295 3945 0.107752 TGCTATGGCAGATGAACGCA 60.108 50.000 0.00 0.00 44.28 5.24
3296 3946 2.694065 TGCTATGGCAGATGAACGC 58.306 52.632 0.00 0.00 44.28 4.84
3306 3956 3.760580 AGACAGGACTATTGCTATGGC 57.239 47.619 0.00 0.00 39.26 4.40
3307 3957 6.652481 CCAAATAGACAGGACTATTGCTATGG 59.348 42.308 5.11 5.58 40.69 2.74
3308 3958 6.148480 GCCAAATAGACAGGACTATTGCTATG 59.852 42.308 5.11 1.28 40.69 2.23
3309 3959 6.234177 GCCAAATAGACAGGACTATTGCTAT 58.766 40.000 5.11 0.00 40.69 2.97
3310 3960 5.454755 GGCCAAATAGACAGGACTATTGCTA 60.455 44.000 0.00 0.00 40.69 3.49
3311 3961 4.455606 GCCAAATAGACAGGACTATTGCT 58.544 43.478 5.11 0.00 40.69 3.91
3312 3962 3.565902 GGCCAAATAGACAGGACTATTGC 59.434 47.826 0.00 5.47 40.69 3.56
3313 3963 5.041191 AGGCCAAATAGACAGGACTATTG 57.959 43.478 5.01 1.54 39.57 1.90
3314 3964 5.440610 CAAGGCCAAATAGACAGGACTATT 58.559 41.667 5.01 0.00 40.80 1.73
3315 3965 4.687219 GCAAGGCCAAATAGACAGGACTAT 60.687 45.833 5.01 0.00 40.80 2.12
3316 3966 3.370527 GCAAGGCCAAATAGACAGGACTA 60.371 47.826 5.01 0.00 40.80 2.59
3317 3967 2.619074 GCAAGGCCAAATAGACAGGACT 60.619 50.000 5.01 0.00 44.53 3.85
3318 3968 1.745653 GCAAGGCCAAATAGACAGGAC 59.254 52.381 5.01 0.00 0.00 3.85
3319 3969 1.678728 CGCAAGGCCAAATAGACAGGA 60.679 52.381 5.01 0.00 0.00 3.86
3320 3970 0.734889 CGCAAGGCCAAATAGACAGG 59.265 55.000 5.01 0.00 0.00 4.00
3321 3971 1.453155 ACGCAAGGCCAAATAGACAG 58.547 50.000 5.01 0.00 46.39 3.51
3322 3972 1.904287 AACGCAAGGCCAAATAGACA 58.096 45.000 5.01 0.00 46.39 3.41
3323 3973 3.297830 AAAACGCAAGGCCAAATAGAC 57.702 42.857 5.01 0.00 46.39 2.59
3324 3974 5.652994 AATAAAACGCAAGGCCAAATAGA 57.347 34.783 5.01 0.00 46.39 1.98
3325 3975 5.866633 TCAAATAAAACGCAAGGCCAAATAG 59.133 36.000 5.01 0.00 46.39 1.73
3326 3976 5.635700 GTCAAATAAAACGCAAGGCCAAATA 59.364 36.000 5.01 0.00 46.39 1.40
3327 3977 4.450757 GTCAAATAAAACGCAAGGCCAAAT 59.549 37.500 5.01 0.00 46.39 2.32
3328 3978 3.804873 GTCAAATAAAACGCAAGGCCAAA 59.195 39.130 5.01 0.00 46.39 3.28
3329 3979 3.068873 AGTCAAATAAAACGCAAGGCCAA 59.931 39.130 5.01 0.00 46.39 4.52
3330 3980 2.625790 AGTCAAATAAAACGCAAGGCCA 59.374 40.909 5.01 0.00 46.39 5.36
3331 3981 3.297830 AGTCAAATAAAACGCAAGGCC 57.702 42.857 0.00 0.00 46.39 5.19
3332 3982 5.651172 AAAAGTCAAATAAAACGCAAGGC 57.349 34.783 0.00 0.00 46.39 4.35
3390 4040 3.482783 GCCACGCACGAAGCTCTC 61.483 66.667 0.00 0.00 42.61 3.20
3391 4041 2.996168 AAAGCCACGCACGAAGCTCT 62.996 55.000 10.89 0.00 42.61 4.09
3398 4048 2.502510 GATGCAAAGCCACGCACG 60.503 61.111 0.00 0.00 41.79 5.34
3423 4076 3.168035 TCCCAAAATTGAGCTAAGGCA 57.832 42.857 0.00 0.00 41.70 4.75
3432 4085 4.031611 TGGCATGATGATCCCAAAATTGA 58.968 39.130 0.00 0.00 0.00 2.57
3440 4093 4.397417 GCTTAGTAATGGCATGATGATCCC 59.603 45.833 0.00 0.00 0.00 3.85
3467 4120 2.029470 CCACGTTGGCCATGTAAAACAT 60.029 45.455 6.09 0.00 39.91 2.71
3496 4149 2.040544 CACCTGGTCGATTGTGCCC 61.041 63.158 0.00 0.00 0.00 5.36
3588 4241 5.870978 GGAATACTTAGTTGTCCTTGCGTAA 59.129 40.000 6.73 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.