Multiple sequence alignment - TraesCS3D01G471500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G471500 chr3D 100.000 3715 0 0 1 3715 573873503 573869789 0.000000e+00 6861.0
1 TraesCS3D01G471500 chr3D 85.714 770 87 13 2064 2817 573966886 573967648 0.000000e+00 791.0
2 TraesCS3D01G471500 chr3D 97.619 42 1 0 1310 1351 123304010 123304051 5.150000e-09 73.1
3 TraesCS3D01G471500 chr3A 88.757 2268 174 33 1469 3715 708932989 708930782 0.000000e+00 2700.0
4 TraesCS3D01G471500 chr3A 92.691 862 39 6 451 1290 708934179 708933320 0.000000e+00 1221.0
5 TraesCS3D01G471500 chr3A 82.887 485 32 34 12 454 708934746 708934271 4.500000e-104 388.0
6 TraesCS3D01G471500 chr3A 95.455 44 2 0 1310 1353 746207648 746207605 1.850000e-08 71.3
7 TraesCS3D01G471500 chr3B 94.914 983 36 4 1785 2753 763262183 763263165 0.000000e+00 1526.0
8 TraesCS3D01G471500 chr3B 85.687 1062 113 22 1788 2820 763220804 763219753 0.000000e+00 1083.0
9 TraesCS3D01G471500 chr3B 95.612 433 18 1 835 1267 763260239 763260670 0.000000e+00 693.0
10 TraesCS3D01G471500 chr3B 82.097 782 99 17 2890 3656 763263420 763264175 6.770000e-177 630.0
11 TraesCS3D01G471500 chr3B 85.331 484 35 25 1 454 763258967 763259444 5.620000e-128 468.0
12 TraesCS3D01G471500 chr3B 86.913 298 26 7 1471 1760 763261906 763262198 4.630000e-84 322.0
13 TraesCS3D01G471500 chr3B 93.119 218 13 2 453 668 763259539 763259756 5.990000e-83 318.0
14 TraesCS3D01G471500 chr3B 96.774 62 2 0 677 738 763260164 763260225 1.830000e-18 104.0
15 TraesCS3D01G471500 chr1A 78.959 922 172 15 1805 2707 520401386 520402304 3.170000e-170 608.0
16 TraesCS3D01G471500 chr1A 84.477 554 83 3 2162 2713 519819561 519820113 9.070000e-151 544.0
17 TraesCS3D01G471500 chr1A 84.353 556 86 1 2162 2716 520351195 520350640 9.070000e-151 544.0
18 TraesCS3D01G471500 chr1A 87.826 230 28 0 1026 1255 520401071 520401300 1.700000e-68 270.0
19 TraesCS3D01G471500 chr1A 87.895 190 23 0 1065 1254 520355220 520355031 1.340000e-54 224.0
20 TraesCS3D01G471500 chr1A 82.432 222 29 9 451 668 496083698 496083483 6.340000e-43 185.0
21 TraesCS3D01G471500 chr1D 85.199 554 74 6 2162 2713 423644296 423644843 2.510000e-156 562.0
22 TraesCS3D01G471500 chr1D 83.303 551 90 2 2154 2703 423882809 423883358 1.190000e-139 507.0
23 TraesCS3D01G471500 chr1D 89.520 229 24 0 1026 1254 423882015 423882243 1.310000e-74 291.0
24 TraesCS3D01G471500 chr1D 85.985 264 34 2 994 1254 423643699 423643962 2.830000e-71 279.0
25 TraesCS3D01G471500 chr1D 82.967 182 23 8 454 631 111392743 111392920 1.380000e-34 158.0
26 TraesCS3D01G471500 chr1D 78.733 221 36 10 453 666 404080424 404080208 1.800000e-28 137.0
27 TraesCS3D01G471500 chr1D 97.561 41 1 0 1310 1350 59879964 59879924 1.850000e-08 71.3
28 TraesCS3D01G471500 chr5A 85.393 178 21 5 494 668 376997126 376996951 2.950000e-41 180.0
29 TraesCS3D01G471500 chr5A 97.561 41 1 0 1310 1350 675308868 675308828 1.850000e-08 71.3
30 TraesCS3D01G471500 chr5D 81.407 199 28 9 454 646 434380098 434380293 1.790000e-33 154.0
31 TraesCS3D01G471500 chr5D 79.464 224 37 7 451 668 447780691 447780471 2.310000e-32 150.0
32 TraesCS3D01G471500 chr5D 78.924 223 39 6 451 668 447796848 447796629 1.080000e-30 145.0
33 TraesCS3D01G471500 chr5D 95.833 48 1 1 1304 1350 89898800 89898847 3.980000e-10 76.8
34 TraesCS3D01G471500 chr2A 77.021 235 35 16 3191 3421 457930754 457930535 2.340000e-22 117.0
35 TraesCS3D01G471500 chr4D 97.619 42 1 0 1310 1351 137891304 137891345 5.150000e-09 73.1
36 TraesCS3D01G471500 chr4D 88.679 53 3 3 1296 1347 93850303 93850353 1.110000e-05 62.1
37 TraesCS3D01G471500 chr2B 95.455 44 2 0 1307 1350 752479686 752479729 1.850000e-08 71.3
38 TraesCS3D01G471500 chrUn 93.617 47 2 1 1306 1352 65789160 65789115 6.660000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G471500 chr3D 573869789 573873503 3714 True 6861.000000 6861 100.000000 1 3715 1 chr3D.!!$R1 3714
1 TraesCS3D01G471500 chr3D 573966886 573967648 762 False 791.000000 791 85.714000 2064 2817 1 chr3D.!!$F2 753
2 TraesCS3D01G471500 chr3A 708930782 708934746 3964 True 1436.333333 2700 88.111667 12 3715 3 chr3A.!!$R2 3703
3 TraesCS3D01G471500 chr3B 763219753 763220804 1051 True 1083.000000 1083 85.687000 1788 2820 1 chr3B.!!$R1 1032
4 TraesCS3D01G471500 chr3B 763258967 763264175 5208 False 580.142857 1526 90.680000 1 3656 7 chr3B.!!$F1 3655
5 TraesCS3D01G471500 chr1A 519819561 519820113 552 False 544.000000 544 84.477000 2162 2713 1 chr1A.!!$F1 551
6 TraesCS3D01G471500 chr1A 520401071 520402304 1233 False 439.000000 608 83.392500 1026 2707 2 chr1A.!!$F2 1681
7 TraesCS3D01G471500 chr1A 520350640 520355220 4580 True 384.000000 544 86.124000 1065 2716 2 chr1A.!!$R2 1651
8 TraesCS3D01G471500 chr1D 423643699 423644843 1144 False 420.500000 562 85.592000 994 2713 2 chr1D.!!$F2 1719
9 TraesCS3D01G471500 chr1D 423882015 423883358 1343 False 399.000000 507 86.411500 1026 2703 2 chr1D.!!$F3 1677

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
768 1310 0.837272 CATACCCCTCCAACCATCGT 59.163 55.0 0.0 0.0 0.00 3.73 F
1255 1831 0.610232 CTGGGGCTTCTTCCAGGTTG 60.610 60.0 0.0 0.0 44.99 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2453 7676 0.241749 TGTCGCCGACGTTGATAACT 59.758 50.000 13.18 0.0 41.18 2.24 R
3093 8453 1.007387 GCTTGACCACAAAAGCGGG 60.007 57.895 0.00 0.0 39.43 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
364 407 9.921637 ATCAAAATTTCTTCGCCATAAGTTTTA 57.078 25.926 0.00 0.00 0.00 1.52
445 488 8.566260 AGAGAAGTGTTCTTGAATTGAGAATTG 58.434 33.333 4.65 0.00 40.87 2.32
446 489 8.230472 AGAAGTGTTCTTGAATTGAGAATTGT 57.770 30.769 4.65 0.00 36.36 2.71
447 490 8.348507 AGAAGTGTTCTTGAATTGAGAATTGTC 58.651 33.333 0.00 0.00 36.36 3.18
449 492 6.547141 AGTGTTCTTGAATTGAGAATTGTCCA 59.453 34.615 0.00 0.00 35.74 4.02
490 630 6.974622 CCATTTTCTAAAAGGTTCATCCGATG 59.025 38.462 1.55 1.55 41.99 3.84
493 633 5.414789 TCTAAAAGGTTCATCCGATGTCA 57.585 39.130 8.24 0.00 41.99 3.58
699 1241 2.380410 GCCGCGATGACTTGTCGTT 61.380 57.895 8.23 0.00 40.98 3.85
768 1310 0.837272 CATACCCCTCCAACCATCGT 59.163 55.000 0.00 0.00 0.00 3.73
778 1320 2.099592 TCCAACCATCGTACGTCCATAC 59.900 50.000 16.05 0.00 0.00 2.39
803 1345 1.672356 ACCGACAGCATTCCAGCAC 60.672 57.895 0.00 0.00 36.85 4.40
816 1358 8.297290 AGCATTCCAGCACTCTACTTCAGTAG 62.297 46.154 7.58 7.58 42.06 2.57
817 1359 2.755655 TCCAGCACTCTACTTCAGTAGC 59.244 50.000 8.88 0.00 45.69 3.58
818 1360 2.757868 CCAGCACTCTACTTCAGTAGCT 59.242 50.000 8.88 0.00 45.69 3.32
820 1362 4.036262 CCAGCACTCTACTTCAGTAGCTAG 59.964 50.000 8.88 5.40 45.69 3.42
821 1363 4.036262 CAGCACTCTACTTCAGTAGCTAGG 59.964 50.000 8.88 0.00 45.69 3.02
822 1364 3.949113 GCACTCTACTTCAGTAGCTAGGT 59.051 47.826 8.88 0.00 45.69 3.08
823 1365 5.104444 AGCACTCTACTTCAGTAGCTAGGTA 60.104 44.000 8.88 0.00 45.69 3.08
824 1366 5.237779 GCACTCTACTTCAGTAGCTAGGTAG 59.762 48.000 8.88 0.00 45.69 3.18
825 1367 5.761234 CACTCTACTTCAGTAGCTAGGTAGG 59.239 48.000 8.88 0.00 45.69 3.18
826 1368 5.429435 ACTCTACTTCAGTAGCTAGGTAGGT 59.571 44.000 8.88 0.00 45.69 3.08
827 1369 6.614906 ACTCTACTTCAGTAGCTAGGTAGGTA 59.385 42.308 8.88 0.00 45.69 3.08
828 1370 7.065120 TCTACTTCAGTAGCTAGGTAGGTAG 57.935 44.000 8.88 3.90 45.69 3.18
829 1371 5.713760 ACTTCAGTAGCTAGGTAGGTAGT 57.286 43.478 0.86 4.73 39.72 2.73
830 1372 6.077202 ACTTCAGTAGCTAGGTAGGTAGTT 57.923 41.667 0.86 0.00 37.73 2.24
831 1373 5.887035 ACTTCAGTAGCTAGGTAGGTAGTTG 59.113 44.000 0.86 2.43 37.73 3.16
832 1374 5.705397 TCAGTAGCTAGGTAGGTAGTTGA 57.295 43.478 0.86 4.34 37.73 3.18
833 1375 5.682659 TCAGTAGCTAGGTAGGTAGTTGAG 58.317 45.833 0.86 0.00 37.73 3.02
918 1491 2.052047 AACGCAACCCAGCACCTAGT 62.052 55.000 0.00 0.00 0.00 2.57
926 1499 1.003580 CCCAGCACCTAGTCAACACAT 59.996 52.381 0.00 0.00 0.00 3.21
938 1511 7.719633 ACCTAGTCAACACATAACAACAGAAAT 59.280 33.333 0.00 0.00 0.00 2.17
941 1514 8.902540 AGTCAACACATAACAACAGAAATCTA 57.097 30.769 0.00 0.00 0.00 1.98
1102 1678 3.467226 CCGACAGGTATGCCCGGT 61.467 66.667 0.00 1.48 45.10 5.28
1255 1831 0.610232 CTGGGGCTTCTTCCAGGTTG 60.610 60.000 0.00 0.00 44.99 3.77
1317 1931 9.664332 TTGATATTCGTATACTACTACTCCCTC 57.336 37.037 0.56 0.00 0.00 4.30
1318 1932 8.263640 TGATATTCGTATACTACTACTCCCTCC 58.736 40.741 0.56 0.00 0.00 4.30
1319 1933 4.527509 TCGTATACTACTACTCCCTCCG 57.472 50.000 0.56 0.00 0.00 4.63
1320 1934 3.898123 TCGTATACTACTACTCCCTCCGT 59.102 47.826 0.56 0.00 0.00 4.69
1321 1935 4.021894 TCGTATACTACTACTCCCTCCGTC 60.022 50.000 0.56 0.00 0.00 4.79
1322 1936 3.786368 ATACTACTACTCCCTCCGTCC 57.214 52.381 0.00 0.00 0.00 4.79
1324 1938 2.769209 ACTACTACTCCCTCCGTCCTA 58.231 52.381 0.00 0.00 0.00 2.94
1325 1939 3.325605 ACTACTACTCCCTCCGTCCTAT 58.674 50.000 0.00 0.00 0.00 2.57
1326 1940 4.497516 ACTACTACTCCCTCCGTCCTATA 58.502 47.826 0.00 0.00 0.00 1.31
1328 1942 5.551189 ACTACTACTCCCTCCGTCCTATAAT 59.449 44.000 0.00 0.00 0.00 1.28
1331 1945 7.761981 ACTACTCCCTCCGTCCTATAATATA 57.238 40.000 0.00 0.00 0.00 0.86
1332 1946 8.167691 ACTACTCCCTCCGTCCTATAATATAA 57.832 38.462 0.00 0.00 0.00 0.98
1333 1947 8.273605 ACTACTCCCTCCGTCCTATAATATAAG 58.726 40.741 0.00 0.00 0.00 1.73
1334 1948 7.281366 ACTCCCTCCGTCCTATAATATAAGA 57.719 40.000 0.00 0.00 0.00 2.10
1335 1949 7.706674 ACTCCCTCCGTCCTATAATATAAGAA 58.293 38.462 0.00 0.00 0.00 2.52
1336 1950 7.614974 ACTCCCTCCGTCCTATAATATAAGAAC 59.385 40.741 0.00 0.00 0.00 3.01
1338 1952 6.376581 CCCTCCGTCCTATAATATAAGAACGT 59.623 42.308 0.00 0.00 0.00 3.99
1341 1955 9.688592 CTCCGTCCTATAATATAAGAACGTTTT 57.311 33.333 0.46 0.00 0.00 2.43
1374 1991 7.502060 TTTCTGTAATTTCTGGAGATCCTCT 57.498 36.000 0.00 0.00 36.82 3.69
1375 1992 8.609617 TTTCTGTAATTTCTGGAGATCCTCTA 57.390 34.615 0.00 0.00 36.82 2.43
1377 1994 6.266558 TCTGTAATTTCTGGAGATCCTCTAGC 59.733 42.308 0.00 0.00 38.66 3.42
1379 1996 2.390225 TTCTGGAGATCCTCTAGCCC 57.610 55.000 0.00 0.00 38.66 5.19
1395 2041 1.598962 CCCGCCAGATGCATGGTAG 60.599 63.158 2.46 0.27 42.75 3.18
1414 2060 4.510340 GGTAGAAACTTTCGCTTGAGTTGA 59.490 41.667 0.00 0.00 36.31 3.18
1415 2061 4.537936 AGAAACTTTCGCTTGAGTTGAC 57.462 40.909 0.00 0.00 36.31 3.18
1567 3261 2.568956 TCAGCTCCAAGTTCTGTGCTAT 59.431 45.455 0.00 0.00 33.38 2.97
1634 3329 5.765182 CCAACTATCCTACTAAAATGGCTGG 59.235 44.000 0.00 0.00 0.00 4.85
1635 3330 5.568620 ACTATCCTACTAAAATGGCTGGG 57.431 43.478 0.00 0.00 0.00 4.45
1716 6772 5.300539 TGTGAACTGGCTGCACTTTAATTTA 59.699 36.000 0.50 0.00 33.83 1.40
1755 6811 6.710295 CGGACCATCCATCTATCAAATTTACA 59.290 38.462 0.00 0.00 35.91 2.41
1756 6812 7.391554 CGGACCATCCATCTATCAAATTTACAT 59.608 37.037 0.00 0.00 35.91 2.29
1757 6813 8.734386 GGACCATCCATCTATCAAATTTACATC 58.266 37.037 0.00 0.00 36.28 3.06
1758 6814 8.641498 ACCATCCATCTATCAAATTTACATCC 57.359 34.615 0.00 0.00 0.00 3.51
1786 6843 7.206687 TCCTCTGTTTGTCGCAAAATAAAATT 58.793 30.769 6.59 0.00 0.00 1.82
1933 6994 2.491621 GCCAATGGCTTCGAAGGC 59.508 61.111 36.98 36.98 46.69 4.35
2158 7381 6.455647 CGTACATACACATATCATTCAGGGT 58.544 40.000 0.00 0.00 0.00 4.34
2732 7962 3.581332 TGTAACCAAACCTAGGTCCAGAG 59.419 47.826 16.64 5.39 38.76 3.35
2795 8086 2.634600 TGTATCCGGTGGCAATTACAC 58.365 47.619 0.00 4.34 38.10 2.90
2818 8109 9.016438 ACACACCCGAACATAAAATAAATAACT 57.984 29.630 0.00 0.00 0.00 2.24
2819 8110 9.498307 CACACCCGAACATAAAATAAATAACTC 57.502 33.333 0.00 0.00 0.00 3.01
2822 8113 8.680001 ACCCGAACATAAAATAAATAACTCCAC 58.320 33.333 0.00 0.00 0.00 4.02
2823 8114 7.853929 CCCGAACATAAAATAAATAACTCCACG 59.146 37.037 0.00 0.00 0.00 4.94
2824 8115 8.605746 CCGAACATAAAATAAATAACTCCACGA 58.394 33.333 0.00 0.00 0.00 4.35
2842 8134 6.936279 TCCACGAGACTGATTTTTCTAGATT 58.064 36.000 0.00 0.00 0.00 2.40
2854 8146 9.277783 TGATTTTTCTAGATTAATCTGCTAGGC 57.722 33.333 25.22 10.04 37.76 3.93
2907 8200 6.748045 GCAGGGATAACAATGGGATAATGAGA 60.748 42.308 0.00 0.00 0.00 3.27
2931 8280 3.707102 TGTCCCAACCATATATGACGACA 59.293 43.478 14.54 13.14 0.00 4.35
2935 8285 5.248248 TCCCAACCATATATGACGACATGAT 59.752 40.000 14.54 1.42 37.87 2.45
2972 8322 4.286707 TGCCTACCTAGATTGTGAGCTTA 58.713 43.478 0.00 0.00 0.00 3.09
2976 8326 6.598064 GCCTACCTAGATTGTGAGCTTAAAAA 59.402 38.462 0.00 0.00 0.00 1.94
2982 8332 7.905493 CCTAGATTGTGAGCTTAAAAATTCGAC 59.095 37.037 0.00 0.00 0.00 4.20
2984 8334 5.759506 TTGTGAGCTTAAAAATTCGACCA 57.240 34.783 0.00 0.00 0.00 4.02
2986 8336 5.060506 TGTGAGCTTAAAAATTCGACCAGA 58.939 37.500 0.00 0.00 0.00 3.86
3005 8355 7.093322 ACCAGATAAACTCATGAGCAAAATC 57.907 36.000 22.83 18.13 0.00 2.17
3019 8369 9.582431 CATGAGCAAAATCACAAGAGATAAATT 57.418 29.630 0.00 0.00 30.46 1.82
3054 8414 7.442666 CAGCTTCTTAACTCCCTCCATAAATAC 59.557 40.741 0.00 0.00 0.00 1.89
3060 8420 2.913617 CTCCCTCCATAAATACCCCCTC 59.086 54.545 0.00 0.00 0.00 4.30
3093 8453 1.927174 CCCGTCAGATCACATCGTTTC 59.073 52.381 0.00 0.00 0.00 2.78
3095 8455 1.927174 CGTCAGATCACATCGTTTCCC 59.073 52.381 0.00 0.00 0.00 3.97
3098 8458 0.537188 AGATCACATCGTTTCCCGCT 59.463 50.000 0.00 0.00 36.19 5.52
3101 8461 1.600023 TCACATCGTTTCCCGCTTTT 58.400 45.000 0.00 0.00 36.19 2.27
3104 8464 1.001815 ACATCGTTTCCCGCTTTTGTG 60.002 47.619 0.00 0.00 36.19 3.33
3115 8475 0.040067 GCTTTTGTGGTCAAGCCGAG 60.040 55.000 0.00 0.00 39.70 4.63
3117 8477 1.532868 CTTTTGTGGTCAAGCCGAGAG 59.467 52.381 0.00 0.00 41.21 3.20
3135 8497 2.783510 AGAGGTGGTTCCCTTCAAAAGA 59.216 45.455 0.00 0.00 34.03 2.52
3139 8501 5.903923 AGGTGGTTCCCTTCAAAAGATAAT 58.096 37.500 0.00 0.00 36.75 1.28
3153 8515 6.659242 TCAAAAGATAATGAAGACCCTTCACC 59.341 38.462 11.10 2.93 0.00 4.02
3154 8516 6.394345 AAAGATAATGAAGACCCTTCACCT 57.606 37.500 11.10 5.29 0.00 4.00
3218 8580 4.218722 CACTATCGTGCCCCCAAC 57.781 61.111 0.00 0.00 33.82 3.77
3222 8584 1.140252 ACTATCGTGCCCCCAACATAC 59.860 52.381 0.00 0.00 0.00 2.39
3223 8585 1.140052 CTATCGTGCCCCCAACATACA 59.860 52.381 0.00 0.00 0.00 2.29
3234 8596 7.015195 GTGCCCCCAACATACATATAAAAGAAT 59.985 37.037 0.00 0.00 0.00 2.40
3259 8621 4.836125 AATCACAACATTTCGTGCTTCT 57.164 36.364 0.00 0.00 33.03 2.85
3277 8639 1.156736 CTGCCGAATCACCGTTTCTT 58.843 50.000 0.00 0.00 0.00 2.52
3283 8645 2.739913 CGAATCACCGTTTCTTAAGCCA 59.260 45.455 0.00 0.00 0.00 4.75
3287 8649 3.135994 TCACCGTTTCTTAAGCCAGTTC 58.864 45.455 0.00 0.00 0.00 3.01
3288 8650 3.139077 CACCGTTTCTTAAGCCAGTTCT 58.861 45.455 0.00 0.00 0.00 3.01
3289 8651 3.058914 CACCGTTTCTTAAGCCAGTTCTG 60.059 47.826 0.00 0.00 0.00 3.02
3309 8672 1.804748 GTGAACCGGAATGTCTCCAAC 59.195 52.381 9.46 0.00 45.74 3.77
3312 8675 1.892209 ACCGGAATGTCTCCAACAAC 58.108 50.000 9.46 0.00 45.74 3.32
3316 8679 2.349438 CGGAATGTCTCCAACAACAACG 60.349 50.000 0.00 0.00 45.74 4.10
3329 8692 3.170717 ACAACAACGAAGATAGGGAGGA 58.829 45.455 0.00 0.00 0.00 3.71
3335 8698 1.330234 GAAGATAGGGAGGACGGACC 58.670 60.000 0.00 0.00 39.35 4.46
3340 8703 4.466898 GGGAGGACGGACCCTTTA 57.533 61.111 0.00 0.00 42.56 1.85
3341 8704 2.687781 GGGAGGACGGACCCTTTAA 58.312 57.895 0.00 0.00 42.56 1.52
3342 8705 1.210538 GGGAGGACGGACCCTTTAAT 58.789 55.000 0.00 0.00 42.56 1.40
3343 8706 1.140452 GGGAGGACGGACCCTTTAATC 59.860 57.143 0.00 0.00 42.56 1.75
3344 8707 1.835531 GGAGGACGGACCCTTTAATCA 59.164 52.381 0.00 0.00 40.05 2.57
3345 8708 2.419713 GGAGGACGGACCCTTTAATCAC 60.420 54.545 0.00 0.00 40.05 3.06
3346 8709 1.558294 AGGACGGACCCTTTAATCACC 59.442 52.381 0.00 0.00 40.05 4.02
3347 8710 1.279846 GGACGGACCCTTTAATCACCA 59.720 52.381 0.00 0.00 0.00 4.17
3348 8711 2.092592 GGACGGACCCTTTAATCACCAT 60.093 50.000 0.00 0.00 0.00 3.55
3349 8712 2.943033 GACGGACCCTTTAATCACCATG 59.057 50.000 0.00 0.00 0.00 3.66
3350 8713 1.676006 CGGACCCTTTAATCACCATGC 59.324 52.381 0.00 0.00 0.00 4.06
3351 8714 2.733956 GGACCCTTTAATCACCATGCA 58.266 47.619 0.00 0.00 0.00 3.96
3352 8715 2.427095 GGACCCTTTAATCACCATGCAC 59.573 50.000 0.00 0.00 0.00 4.57
3353 8716 3.088532 GACCCTTTAATCACCATGCACA 58.911 45.455 0.00 0.00 0.00 4.57
3354 8717 3.091545 ACCCTTTAATCACCATGCACAG 58.908 45.455 0.00 0.00 0.00 3.66
3374 8737 1.619332 GTTGTCCTCGACTTCCTCCTT 59.381 52.381 0.00 0.00 33.15 3.36
3403 8766 5.394333 CGATGAGCCTGATAGATCATGTCAT 60.394 44.000 0.00 9.49 36.02 3.06
3459 8822 0.249238 CCCGAAGATCTCTGAAGCCG 60.249 60.000 0.00 0.00 0.00 5.52
3468 8831 1.115467 CTCTGAAGCCGGACCTATGT 58.885 55.000 5.05 0.00 0.00 2.29
3480 8843 2.434336 GGACCTATGTAGACATGCCACA 59.566 50.000 5.39 0.00 37.15 4.17
3509 8872 1.763770 CCAAGACAACAGGAGCCCT 59.236 57.895 0.00 0.00 0.00 5.19
3510 8873 0.322008 CCAAGACAACAGGAGCCCTC 60.322 60.000 0.00 0.00 0.00 4.30
3519 8883 3.314951 GGAGCCCTCCTGGTTCTC 58.685 66.667 7.08 0.00 46.16 2.87
3554 8918 4.453480 AAGGGATTTCAACTCCAGACAA 57.547 40.909 0.00 0.00 34.24 3.18
3557 8921 3.149196 GGATTTCAACTCCAGACAAGCA 58.851 45.455 0.00 0.00 32.72 3.91
3558 8922 3.190118 GGATTTCAACTCCAGACAAGCAG 59.810 47.826 0.00 0.00 32.72 4.24
3559 8923 3.281727 TTTCAACTCCAGACAAGCAGT 57.718 42.857 0.00 0.00 0.00 4.40
3562 8926 0.839946 AACTCCAGACAAGCAGTGGT 59.160 50.000 0.00 0.00 32.73 4.16
3563 8927 1.717032 ACTCCAGACAAGCAGTGGTA 58.283 50.000 0.00 0.00 32.73 3.25
3571 8935 4.081972 CAGACAAGCAGTGGTACTAGTGAT 60.082 45.833 17.48 8.66 0.00 3.06
3577 8941 1.476891 AGTGGTACTAGTGATGGTGCG 59.523 52.381 5.39 0.00 0.00 5.34
3602 8966 1.616628 CTGGGGTGGCCTTCCTACT 60.617 63.158 3.32 0.00 0.00 2.57
3628 8992 3.645975 CAACACTTCGCCGGCGTT 61.646 61.111 44.16 29.81 40.74 4.84
3656 9020 3.310954 ACCAATATGACTGAGGTCCCTCT 60.311 47.826 14.20 0.00 43.12 3.69
3658 9022 2.350057 TATGACTGAGGTCCCTCTCG 57.650 55.000 14.20 7.99 43.12 4.04
3659 9023 1.040339 ATGACTGAGGTCCCTCTCGC 61.040 60.000 14.20 4.39 43.12 5.03
3660 9024 2.363147 ACTGAGGTCCCTCTCGCC 60.363 66.667 14.20 0.00 43.12 5.54
3661 9025 3.151022 CTGAGGTCCCTCTCGCCC 61.151 72.222 14.20 0.00 43.12 6.13
3663 9027 3.151022 GAGGTCCCTCTCGCCCAG 61.151 72.222 6.08 0.00 39.80 4.45
3664 9028 3.663815 GAGGTCCCTCTCGCCCAGA 62.664 68.421 6.08 0.00 39.80 3.86
3665 9029 2.444895 GGTCCCTCTCGCCCAGAT 60.445 66.667 0.00 0.00 0.00 2.90
3692 9056 1.343478 CCTCCTCCAGAAGAAGGCCTA 60.343 57.143 5.16 0.00 0.00 3.93
3695 9059 4.227197 CTCCTCCAGAAGAAGGCCTATTA 58.773 47.826 5.16 0.00 0.00 0.98
3696 9060 4.832492 TCCTCCAGAAGAAGGCCTATTAT 58.168 43.478 5.16 0.00 0.00 1.28
3704 9068 8.429641 CCAGAAGAAGGCCTATTATTTGTACTA 58.570 37.037 5.16 0.00 0.00 1.82
3706 9070 8.430431 AGAAGAAGGCCTATTATTTGTACTACC 58.570 37.037 5.16 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.521529 ATGATCTACCTGCGCCGGC 62.522 63.158 19.07 19.07 40.52 6.13
184 227 7.252965 TGTTCACGATTTTAACAGAATCACA 57.747 32.000 0.00 0.00 34.02 3.58
383 426 8.115520 TGAACTTTTTGAATTCAGCGAATTTTG 58.884 29.630 8.41 0.00 41.56 2.44
391 434 5.460646 TCGGATGAACTTTTTGAATTCAGC 58.539 37.500 8.41 0.00 37.88 4.26
445 488 8.831715 AAATGGATTAACAGTTTTTGATGGAC 57.168 30.769 0.00 0.00 0.00 4.02
446 489 9.487790 GAAAATGGATTAACAGTTTTTGATGGA 57.512 29.630 0.00 0.00 38.57 3.41
447 490 9.492973 AGAAAATGGATTAACAGTTTTTGATGG 57.507 29.630 0.00 0.00 38.57 3.51
628 771 9.703892 TTCAATTGGAATAATGTTCGTGATTTT 57.296 25.926 5.42 0.00 0.00 1.82
699 1241 1.476833 GCTTCACTCCAACTCAACCCA 60.477 52.381 0.00 0.00 0.00 4.51
768 1310 2.023673 CGGTGGTTAGGTATGGACGTA 58.976 52.381 0.00 0.00 0.00 3.57
778 1320 1.369625 GAATGCTGTCGGTGGTTAGG 58.630 55.000 0.00 0.00 0.00 2.69
816 1358 3.025262 AGTGCTCAACTACCTACCTAGC 58.975 50.000 0.00 0.00 37.36 3.42
817 1359 4.017808 ACAGTGCTCAACTACCTACCTAG 58.982 47.826 0.00 0.00 36.83 3.02
818 1360 3.762288 CACAGTGCTCAACTACCTACCTA 59.238 47.826 0.00 0.00 36.83 3.08
820 1362 2.353803 CCACAGTGCTCAACTACCTACC 60.354 54.545 0.00 0.00 36.83 3.18
821 1363 2.561419 TCCACAGTGCTCAACTACCTAC 59.439 50.000 0.00 0.00 36.83 3.18
822 1364 2.884320 TCCACAGTGCTCAACTACCTA 58.116 47.619 0.00 0.00 36.83 3.08
823 1365 1.717032 TCCACAGTGCTCAACTACCT 58.283 50.000 0.00 0.00 36.83 3.08
824 1366 2.543777 TTCCACAGTGCTCAACTACC 57.456 50.000 0.00 0.00 36.83 3.18
825 1367 2.548480 GGTTTCCACAGTGCTCAACTAC 59.452 50.000 0.00 0.00 36.83 2.73
826 1368 2.171659 TGGTTTCCACAGTGCTCAACTA 59.828 45.455 0.00 0.00 36.83 2.24
827 1369 1.064758 TGGTTTCCACAGTGCTCAACT 60.065 47.619 0.00 0.00 40.93 3.16
828 1370 1.388547 TGGTTTCCACAGTGCTCAAC 58.611 50.000 0.00 0.00 0.00 3.18
829 1371 3.892633 TGGTTTCCACAGTGCTCAA 57.107 47.368 0.00 0.00 0.00 3.02
918 1491 7.443879 TGCTAGATTTCTGTTGTTATGTGTTGA 59.556 33.333 0.00 0.00 0.00 3.18
926 1499 8.506437 CACAGAATTGCTAGATTTCTGTTGTTA 58.494 33.333 22.47 0.00 35.15 2.41
938 1511 3.943381 CCAATGCTCACAGAATTGCTAGA 59.057 43.478 0.00 0.00 39.45 2.43
941 1514 1.822990 CCCAATGCTCACAGAATTGCT 59.177 47.619 0.00 0.00 39.45 3.91
1068 1644 1.517832 GGGGATCACAGTGGAGTCG 59.482 63.158 0.00 0.00 0.00 4.18
1102 1678 0.684479 CCGTCCCTGACCTCATCTGA 60.684 60.000 0.00 0.00 0.00 3.27
1313 1927 6.376581 ACGTTCTTATATTATAGGACGGAGGG 59.623 42.308 13.99 1.22 45.45 4.30
1314 1928 7.388460 ACGTTCTTATATTATAGGACGGAGG 57.612 40.000 13.99 4.68 45.45 4.30
1315 1929 9.688592 AAAACGTTCTTATATTATAGGACGGAG 57.311 33.333 0.00 4.83 45.45 4.63
1331 1945 7.480810 ACAGAAATAGCTTGAAAAACGTTCTT 58.519 30.769 0.00 0.00 0.00 2.52
1332 1946 7.027778 ACAGAAATAGCTTGAAAAACGTTCT 57.972 32.000 0.00 0.00 0.00 3.01
1333 1947 8.776680 TTACAGAAATAGCTTGAAAAACGTTC 57.223 30.769 0.00 0.00 0.00 3.95
1334 1948 9.744468 AATTACAGAAATAGCTTGAAAAACGTT 57.256 25.926 0.00 0.00 0.00 3.99
1335 1949 9.744468 AAATTACAGAAATAGCTTGAAAAACGT 57.256 25.926 0.00 0.00 0.00 3.99
1341 1955 8.862325 TCCAGAAATTACAGAAATAGCTTGAA 57.138 30.769 0.00 0.00 0.00 2.69
1342 1956 8.321353 TCTCCAGAAATTACAGAAATAGCTTGA 58.679 33.333 0.00 0.00 0.00 3.02
1343 1957 8.498054 TCTCCAGAAATTACAGAAATAGCTTG 57.502 34.615 0.00 0.00 0.00 4.01
1346 1960 7.936301 AGGATCTCCAGAAATTACAGAAATAGC 59.064 37.037 0.00 0.00 38.89 2.97
1347 1961 9.487790 GAGGATCTCCAGAAATTACAGAAATAG 57.512 37.037 0.00 0.00 38.89 1.73
1395 2041 3.618698 GGTCAACTCAAGCGAAAGTTTC 58.381 45.455 5.47 5.47 33.53 2.78
1468 2115 7.549134 AGTCCAACAATTCTTTTTCAAGTTTCC 59.451 33.333 0.00 0.00 0.00 3.13
1469 2116 8.382875 CAGTCCAACAATTCTTTTTCAAGTTTC 58.617 33.333 0.00 0.00 0.00 2.78
1470 2117 8.093927 TCAGTCCAACAATTCTTTTTCAAGTTT 58.906 29.630 0.00 0.00 0.00 2.66
1471 2118 7.610865 TCAGTCCAACAATTCTTTTTCAAGTT 58.389 30.769 0.00 0.00 0.00 2.66
1472 2119 7.169158 TCAGTCCAACAATTCTTTTTCAAGT 57.831 32.000 0.00 0.00 0.00 3.16
1473 2120 8.477984 TTTCAGTCCAACAATTCTTTTTCAAG 57.522 30.769 0.00 0.00 0.00 3.02
1475 2122 8.256605 TGATTTCAGTCCAACAATTCTTTTTCA 58.743 29.630 0.00 0.00 0.00 2.69
1524 3218 8.957466 GCTGAATAAAGAATACCCAAACTTACT 58.043 33.333 0.00 0.00 0.00 2.24
1605 3299 9.569122 GCCATTTTAGTAGGATAGTTGGAAATA 57.431 33.333 0.00 0.00 0.00 1.40
1606 3300 8.282256 AGCCATTTTAGTAGGATAGTTGGAAAT 58.718 33.333 0.00 0.00 0.00 2.17
1608 3302 7.054124 CAGCCATTTTAGTAGGATAGTTGGAA 58.946 38.462 0.00 0.00 0.00 3.53
1611 3305 5.765182 CCCAGCCATTTTAGTAGGATAGTTG 59.235 44.000 0.00 0.00 0.00 3.16
1650 3345 7.300556 TCTCATTTTCATGGAAATTTCACCA 57.699 32.000 19.49 10.52 40.57 4.17
1716 6772 4.712337 GGATGGTCCGGTAGATAGATCAAT 59.288 45.833 0.00 0.00 0.00 2.57
1755 6811 2.766263 TGCGACAAACAGAGGATAGGAT 59.234 45.455 0.00 0.00 0.00 3.24
1756 6812 2.176045 TGCGACAAACAGAGGATAGGA 58.824 47.619 0.00 0.00 0.00 2.94
1757 6813 2.672961 TGCGACAAACAGAGGATAGG 57.327 50.000 0.00 0.00 0.00 2.57
1758 6814 5.551760 ATTTTGCGACAAACAGAGGATAG 57.448 39.130 4.80 0.00 0.00 2.08
1786 6843 7.161404 ACTGCGAATATAGAGGATGCAATTTA 58.839 34.615 0.00 0.00 0.00 1.40
1792 6849 5.926542 TGTTAACTGCGAATATAGAGGATGC 59.073 40.000 7.22 0.00 0.00 3.91
1801 6862 5.650266 TCCATGGTTTGTTAACTGCGAATAT 59.350 36.000 12.58 0.00 34.59 1.28
1933 6994 1.608590 CTGTTGTAGTGGTGCCCAAAG 59.391 52.381 0.00 0.00 34.18 2.77
2158 7381 3.871006 CACTGAGTACTTGTCAAGTGCAA 59.129 43.478 28.47 18.14 45.20 4.08
2453 7676 0.241749 TGTCGCCGACGTTGATAACT 59.758 50.000 13.18 0.00 41.18 2.24
2732 7962 8.865420 AAGAAAGTAACTTCTTTAGATTCCCC 57.135 34.615 0.00 0.00 41.81 4.81
2795 8086 8.679100 TGGAGTTATTTATTTTATGTTCGGGTG 58.321 33.333 0.00 0.00 0.00 4.61
2817 8108 5.955488 TCTAGAAAAATCAGTCTCGTGGAG 58.045 41.667 0.00 0.00 0.00 3.86
2818 8109 5.977489 TCTAGAAAAATCAGTCTCGTGGA 57.023 39.130 0.00 0.00 0.00 4.02
2819 8110 8.703604 TTAATCTAGAAAAATCAGTCTCGTGG 57.296 34.615 0.00 0.00 0.00 4.94
2865 8157 4.220382 TCCCTGCAAACATACCAATTTGAG 59.780 41.667 0.00 0.00 37.91 3.02
2867 8159 4.533919 TCCCTGCAAACATACCAATTTG 57.466 40.909 0.00 0.00 38.57 2.32
2882 8175 5.324409 TCATTATCCCATTGTTATCCCTGC 58.676 41.667 0.00 0.00 0.00 4.85
2907 8200 5.163248 TGTCGTCATATATGGTTGGGACATT 60.163 40.000 12.78 0.00 39.30 2.71
2931 8280 9.678260 GGTAGGCATCATTTATCTTTAGATCAT 57.322 33.333 0.00 0.00 36.05 2.45
2935 8285 9.601810 TCTAGGTAGGCATCATTTATCTTTAGA 57.398 33.333 0.00 0.00 0.00 2.10
2948 8298 3.323403 AGCTCACAATCTAGGTAGGCATC 59.677 47.826 0.00 0.00 0.00 3.91
2956 8306 7.905493 GTCGAATTTTTAAGCTCACAATCTAGG 59.095 37.037 0.00 0.00 0.00 3.02
2972 8322 8.335532 TCATGAGTTTATCTGGTCGAATTTTT 57.664 30.769 0.00 0.00 0.00 1.94
2976 8326 5.053145 GCTCATGAGTTTATCTGGTCGAAT 58.947 41.667 23.38 0.00 0.00 3.34
2982 8332 6.971184 GTGATTTTGCTCATGAGTTTATCTGG 59.029 38.462 23.38 0.00 0.00 3.86
2984 8334 7.692460 TGTGATTTTGCTCATGAGTTTATCT 57.308 32.000 23.38 5.21 0.00 1.98
2986 8336 8.114331 TCTTGTGATTTTGCTCATGAGTTTAT 57.886 30.769 23.38 11.96 0.00 1.40
3019 8369 7.231467 AGGGAGTTAAGAAGCTGTTTGAATAA 58.769 34.615 0.00 0.00 0.00 1.40
3026 8376 2.979678 TGGAGGGAGTTAAGAAGCTGTT 59.020 45.455 0.00 0.00 0.00 3.16
3031 8381 7.225011 GGGTATTTATGGAGGGAGTTAAGAAG 58.775 42.308 0.00 0.00 0.00 2.85
3036 8386 4.077026 AGGGGGTATTTATGGAGGGAGTTA 60.077 45.833 0.00 0.00 0.00 2.24
3038 8388 2.255649 AGGGGGTATTTATGGAGGGAGT 59.744 50.000 0.00 0.00 0.00 3.85
3054 8414 1.076485 CTTGAATGCCTGGAGGGGG 60.076 63.158 0.00 0.00 35.18 5.40
3093 8453 1.007387 GCTTGACCACAAAAGCGGG 60.007 57.895 0.00 0.00 39.43 6.13
3098 8458 1.593196 CTCTCGGCTTGACCACAAAA 58.407 50.000 0.00 0.00 39.03 2.44
3101 8461 1.837051 ACCTCTCGGCTTGACCACA 60.837 57.895 0.00 0.00 39.03 4.17
3104 8464 2.113243 AACCACCTCTCGGCTTGACC 62.113 60.000 0.00 0.00 0.00 4.02
3108 8468 3.069778 GGAACCACCTCTCGGCTT 58.930 61.111 0.00 0.00 35.41 4.35
3121 8482 7.363007 GGGTCTTCATTATCTTTTGAAGGGAAC 60.363 40.741 11.51 4.38 45.69 3.62
3135 8497 4.080299 GGTCAGGTGAAGGGTCTTCATTAT 60.080 45.833 12.63 1.34 0.00 1.28
3139 8501 1.056660 GGTCAGGTGAAGGGTCTTCA 58.943 55.000 6.28 6.28 0.00 3.02
3181 8543 1.229820 ACCTGGTGGGCATAGACCA 60.230 57.895 0.00 0.00 39.14 4.02
3184 8546 1.922881 TGCACCTGGTGGGCATAGA 60.923 57.895 27.02 0.00 39.10 1.98
3234 8596 7.167302 CAGAAGCACGAAATGTTGTGATTTTTA 59.833 33.333 8.17 0.00 43.95 1.52
3248 8610 1.875996 TGATTCGGCAGAAGCACGAAA 60.876 47.619 13.57 0.00 46.40 3.46
3251 8613 3.874873 TGATTCGGCAGAAGCACG 58.125 55.556 13.57 0.00 46.40 5.34
3259 8621 2.459060 TAAGAAACGGTGATTCGGCA 57.541 45.000 0.00 0.00 32.04 5.69
3277 8639 1.270625 CCGGTTCACAGAACTGGCTTA 60.271 52.381 21.04 0.00 39.57 3.09
3283 8645 2.368875 AGACATTCCGGTTCACAGAACT 59.631 45.455 0.00 0.00 0.00 3.01
3287 8649 1.726853 GGAGACATTCCGGTTCACAG 58.273 55.000 0.00 0.00 35.91 3.66
3288 8650 3.927555 GGAGACATTCCGGTTCACA 57.072 52.632 0.00 0.00 35.91 3.58
3309 8672 3.522553 GTCCTCCCTATCTTCGTTGTTG 58.477 50.000 0.00 0.00 0.00 3.33
3312 8675 1.067212 CCGTCCTCCCTATCTTCGTTG 59.933 57.143 0.00 0.00 0.00 4.10
3316 8679 1.330234 GGTCCGTCCTCCCTATCTTC 58.670 60.000 0.00 0.00 0.00 2.87
3329 8692 2.944094 GCATGGTGATTAAAGGGTCCGT 60.944 50.000 0.00 0.00 0.00 4.69
3335 8698 4.022068 ACAACTGTGCATGGTGATTAAAGG 60.022 41.667 13.48 0.00 0.00 3.11
3338 8701 3.505680 GGACAACTGTGCATGGTGATTAA 59.494 43.478 13.48 0.00 36.33 1.40
3339 8702 3.081061 GGACAACTGTGCATGGTGATTA 58.919 45.455 13.48 0.00 36.33 1.75
3340 8703 1.888512 GGACAACTGTGCATGGTGATT 59.111 47.619 13.48 0.00 36.33 2.57
3341 8704 1.074405 AGGACAACTGTGCATGGTGAT 59.926 47.619 13.48 0.05 38.96 3.06
3342 8705 0.473755 AGGACAACTGTGCATGGTGA 59.526 50.000 13.48 0.00 38.96 4.02
3343 8706 0.877071 GAGGACAACTGTGCATGGTG 59.123 55.000 4.10 6.22 38.96 4.17
3344 8707 0.603707 CGAGGACAACTGTGCATGGT 60.604 55.000 4.10 0.00 38.96 3.55
3345 8708 0.320683 TCGAGGACAACTGTGCATGG 60.321 55.000 4.10 0.00 38.96 3.66
3346 8709 0.792640 GTCGAGGACAACTGTGCATG 59.207 55.000 4.10 0.00 38.96 4.06
3347 8710 0.681733 AGTCGAGGACAACTGTGCAT 59.318 50.000 4.10 0.00 38.96 3.96
3348 8711 0.464036 AAGTCGAGGACAACTGTGCA 59.536 50.000 4.10 0.00 38.96 4.57
3349 8712 1.140816 GAAGTCGAGGACAACTGTGC 58.859 55.000 0.00 0.00 34.60 4.57
3350 8713 1.341531 AGGAAGTCGAGGACAACTGTG 59.658 52.381 0.00 0.00 34.60 3.66
3351 8714 1.614413 GAGGAAGTCGAGGACAACTGT 59.386 52.381 0.00 0.00 34.60 3.55
3352 8715 1.067495 GGAGGAAGTCGAGGACAACTG 60.067 57.143 0.00 0.00 34.60 3.16
3353 8716 1.203075 AGGAGGAAGTCGAGGACAACT 60.203 52.381 0.00 0.00 34.60 3.16
3354 8717 1.258676 AGGAGGAAGTCGAGGACAAC 58.741 55.000 0.00 0.00 34.60 3.32
3390 8753 9.941325 GAATAGGTTGAAGATGACATGATCTAT 57.059 33.333 0.00 0.00 32.11 1.98
3392 8755 7.799081 TGAATAGGTTGAAGATGACATGATCT 58.201 34.615 0.00 0.00 33.91 2.75
3403 8766 4.844085 TGACCTCCTTGAATAGGTTGAAGA 59.156 41.667 1.48 0.00 46.22 2.87
3450 8813 2.092049 TCTACATAGGTCCGGCTTCAGA 60.092 50.000 0.00 0.00 0.00 3.27
3459 8822 2.434336 TGTGGCATGTCTACATAGGTCC 59.566 50.000 0.00 0.00 34.26 4.46
3489 8852 1.228245 GGCTCCTGTTGTCTTGGCA 60.228 57.895 0.00 0.00 0.00 4.92
3490 8853 1.973812 GGGCTCCTGTTGTCTTGGC 60.974 63.158 0.00 0.00 0.00 4.52
3491 8854 0.322008 GAGGGCTCCTGTTGTCTTGG 60.322 60.000 0.00 0.00 31.76 3.61
3492 8855 0.322008 GGAGGGCTCCTGTTGTCTTG 60.322 60.000 0.00 0.00 46.16 3.02
3509 8872 1.555075 CTTCGGGAATGAGAACCAGGA 59.445 52.381 0.00 0.00 0.00 3.86
3510 8873 1.407437 CCTTCGGGAATGAGAACCAGG 60.407 57.143 0.00 0.00 37.25 4.45
3533 8897 4.401925 CTTGTCTGGAGTTGAAATCCCTT 58.598 43.478 9.39 0.00 35.86 3.95
3535 8899 2.489722 GCTTGTCTGGAGTTGAAATCCC 59.510 50.000 9.39 0.00 35.86 3.85
3541 8905 1.202687 CCACTGCTTGTCTGGAGTTGA 60.203 52.381 0.00 0.00 36.49 3.18
3550 8914 3.936372 TCACTAGTACCACTGCTTGTC 57.064 47.619 0.00 0.00 0.00 3.18
3554 8918 2.497675 CACCATCACTAGTACCACTGCT 59.502 50.000 0.00 0.00 0.00 4.24
3557 8921 1.476891 CGCACCATCACTAGTACCACT 59.523 52.381 0.00 0.00 0.00 4.00
3558 8922 1.922570 CGCACCATCACTAGTACCAC 58.077 55.000 0.00 0.00 0.00 4.16
3559 8923 0.174845 GCGCACCATCACTAGTACCA 59.825 55.000 0.30 0.00 0.00 3.25
3562 8926 2.585876 TGGCGCACCATCACTAGTA 58.414 52.632 10.83 0.00 42.67 1.82
3563 8927 3.387716 TGGCGCACCATCACTAGT 58.612 55.556 10.83 0.00 42.67 2.57
3589 8953 4.147135 TCCCAGTAGGAAGGCCAC 57.853 61.111 5.01 0.00 43.78 5.01
3626 8990 4.130118 CTCAGTCATATTGGTGCCCTAAC 58.870 47.826 0.00 0.00 0.00 2.34
3628 8992 2.705658 CCTCAGTCATATTGGTGCCCTA 59.294 50.000 0.00 0.00 0.00 3.53
3634 8998 3.041946 GAGGGACCTCAGTCATATTGGT 58.958 50.000 13.37 0.00 45.48 3.67
3638 9002 2.870175 CGAGAGGGACCTCAGTCATAT 58.130 52.381 19.79 0.00 45.48 1.78
3639 9003 1.751032 GCGAGAGGGACCTCAGTCATA 60.751 57.143 19.79 0.00 45.48 2.15
3645 9009 3.965026 CTGGGCGAGAGGGACCTCA 62.965 68.421 19.79 0.00 44.99 3.86
3660 9024 1.124477 GGAGGAGGCCCACTATCTGG 61.124 65.000 0.00 0.00 40.26 3.86
3661 9025 0.399091 TGGAGGAGGCCCACTATCTG 60.399 60.000 0.00 0.00 33.88 2.90
3663 9027 0.105453 TCTGGAGGAGGCCCACTATC 60.105 60.000 0.00 0.00 33.88 2.08
3664 9028 0.343372 TTCTGGAGGAGGCCCACTAT 59.657 55.000 0.00 0.00 33.88 2.12
3665 9029 0.325671 CTTCTGGAGGAGGCCCACTA 60.326 60.000 0.00 0.00 33.88 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.