Multiple sequence alignment - TraesCS3D01G470300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G470300 chr3D 100.000 4321 0 0 1 4321 572104002 572099682 0.000000e+00 7980.0
1 TraesCS3D01G470300 chr3D 88.376 1084 125 1 2210 3293 572046032 572044950 0.000000e+00 1303.0
2 TraesCS3D01G470300 chr3D 85.346 1085 157 2 2217 3300 572085497 572084414 0.000000e+00 1122.0
3 TraesCS3D01G470300 chr3D 81.735 761 115 17 962 1713 572049417 572048672 7.940000e-172 614.0
4 TraesCS3D01G470300 chr3D 92.208 154 8 4 3573 3725 572081786 572081636 9.410000e-52 215.0
5 TraesCS3D01G470300 chr3D 92.029 138 10 1 3338 3475 572082086 572081950 4.410000e-45 193.0
6 TraesCS3D01G470300 chr3D 95.349 43 2 0 665 707 15023194 15023152 7.750000e-08 69.4
7 TraesCS3D01G470300 chr3A 94.055 3650 162 16 705 4321 706849896 706853523 0.000000e+00 5487.0
8 TraesCS3D01G470300 chr3A 88.095 1092 123 2 2216 3300 706922856 706923947 0.000000e+00 1290.0
9 TraesCS3D01G470300 chr3A 81.349 756 120 15 962 1709 706911332 706912074 2.880000e-166 595.0
10 TraesCS3D01G470300 chr3A 84.211 152 22 2 1567 1717 706900228 706900378 3.480000e-31 147.0
11 TraesCS3D01G470300 chr3A 85.000 100 12 1 1566 1665 706850712 706850808 9.890000e-17 99.0
12 TraesCS3D01G470300 chr3B 93.547 3502 175 17 862 4321 761900881 761904373 0.000000e+00 5168.0
13 TraesCS3D01G470300 chr3B 88.307 1069 125 0 2216 3284 761936925 761937993 0.000000e+00 1282.0
14 TraesCS3D01G470300 chr3B 81.877 778 119 17 962 1731 761933225 761933988 1.690000e-178 636.0
15 TraesCS3D01G470300 chr3B 95.082 122 5 1 748 868 761899669 761899790 1.590000e-44 191.0
16 TraesCS3D01G470300 chr3B 89.844 128 12 1 4193 4320 584975600 584975726 3.460000e-36 163.0
17 TraesCS3D01G470300 chr3B 88.172 93 8 2 1566 1658 761901547 761901636 1.640000e-19 108.0
18 TraesCS3D01G470300 chr3B 84.932 73 9 2 642 712 823097387 823097315 5.990000e-09 73.1
19 TraesCS3D01G470300 chr2B 83.799 1074 165 7 2241 3308 390925520 390926590 0.000000e+00 1011.0
20 TraesCS3D01G470300 chr2B 94.872 39 2 0 3557 3595 779107329 779107367 1.300000e-05 62.1
21 TraesCS3D01G470300 chr2D 83.411 1073 169 7 2242 3308 323076868 323077937 0.000000e+00 987.0
22 TraesCS3D01G470300 chr2D 88.889 63 6 1 642 704 620309088 620309149 4.630000e-10 76.8
23 TraesCS3D01G470300 chr2A 83.054 1074 173 7 2241 3308 407740548 407739478 0.000000e+00 966.0
24 TraesCS3D01G470300 chr2A 94.872 39 2 0 3557 3595 196123936 196123974 1.300000e-05 62.1
25 TraesCS3D01G470300 chr4B 82.963 270 31 9 146 404 17487817 17487552 3.360000e-56 230.0
26 TraesCS3D01G470300 chr4B 85.156 128 19 0 4193 4320 55920080 55919953 9.750000e-27 132.0
27 TraesCS3D01G470300 chr7B 87.363 182 17 6 526 707 484054702 484054527 2.040000e-48 204.0
28 TraesCS3D01G470300 chr4A 90.370 135 10 2 146 280 567036740 567036871 1.600000e-39 174.0
29 TraesCS3D01G470300 chr4A 89.655 58 4 2 662 718 731689279 731689335 5.990000e-09 73.1
30 TraesCS3D01G470300 chr4A 87.931 58 7 0 1748 1805 695134987 695134930 7.750000e-08 69.4
31 TraesCS3D01G470300 chr5D 89.844 128 13 0 4193 4320 233950982 233951109 9.610000e-37 165.0
32 TraesCS3D01G470300 chr5D 78.231 294 27 10 146 404 525465300 525465591 2.080000e-33 154.0
33 TraesCS3D01G470300 chr5D 91.954 87 7 0 146 232 113748036 113747950 5.870000e-24 122.0
34 TraesCS3D01G470300 chr5D 81.301 123 23 0 4198 4320 486814628 486814750 2.750000e-17 100.0
35 TraesCS3D01G470300 chr5D 90.741 54 2 2 227 280 113747933 113747883 7.750000e-08 69.4
36 TraesCS3D01G470300 chr4D 87.603 121 15 0 4193 4313 369311351 369311231 1.620000e-29 141.0
37 TraesCS3D01G470300 chr6D 87.179 117 15 0 4192 4308 61726939 61727055 2.710000e-27 134.0
38 TraesCS3D01G470300 chr6D 93.103 87 6 0 146 232 429976152 429976238 1.260000e-25 128.0
39 TraesCS3D01G470300 chr6D 90.476 63 5 1 642 704 141789647 141789708 9.960000e-12 82.4
40 TraesCS3D01G470300 chr6D 90.196 51 4 1 657 706 43072828 43072878 1.000000e-06 65.8
41 TraesCS3D01G470300 chr1B 84.000 125 20 0 4196 4320 59517935 59517811 2.110000e-23 121.0
42 TraesCS3D01G470300 chr1B 86.364 88 7 2 146 232 368077025 368076942 1.650000e-14 91.6
43 TraesCS3D01G470300 chr1B 93.443 61 1 2 220 280 368076932 368076875 2.140000e-13 87.9
44 TraesCS3D01G470300 chr1A 88.764 89 7 3 146 232 427506197 427506110 5.910000e-19 106.0
45 TraesCS3D01G470300 chr1A 100.000 30 0 0 1776 1805 10224743 10224714 6.040000e-04 56.5
46 TraesCS3D01G470300 chr5B 92.857 56 3 1 649 704 591643750 591643696 3.580000e-11 80.5
47 TraesCS3D01G470300 chr7A 84.848 66 8 1 641 704 559207567 559207502 1.000000e-06 65.8
48 TraesCS3D01G470300 chr5A 96.875 32 1 0 1775 1806 462153066 462153097 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G470300 chr3D 572099682 572104002 4320 True 7980.000000 7980 100.0000 1 4321 1 chr3D.!!$R2 4320
1 TraesCS3D01G470300 chr3D 572044950 572049417 4467 True 958.500000 1303 85.0555 962 3293 2 chr3D.!!$R3 2331
2 TraesCS3D01G470300 chr3D 572081636 572085497 3861 True 510.000000 1122 89.8610 2217 3725 3 chr3D.!!$R4 1508
3 TraesCS3D01G470300 chr3A 706849896 706853523 3627 False 2793.000000 5487 89.5275 705 4321 2 chr3A.!!$F4 3616
4 TraesCS3D01G470300 chr3A 706922856 706923947 1091 False 1290.000000 1290 88.0950 2216 3300 1 chr3A.!!$F3 1084
5 TraesCS3D01G470300 chr3A 706911332 706912074 742 False 595.000000 595 81.3490 962 1709 1 chr3A.!!$F2 747
6 TraesCS3D01G470300 chr3B 761899669 761904373 4704 False 1822.333333 5168 92.2670 748 4321 3 chr3B.!!$F2 3573
7 TraesCS3D01G470300 chr3B 761933225 761937993 4768 False 959.000000 1282 85.0920 962 3284 2 chr3B.!!$F3 2322
8 TraesCS3D01G470300 chr2B 390925520 390926590 1070 False 1011.000000 1011 83.7990 2241 3308 1 chr2B.!!$F1 1067
9 TraesCS3D01G470300 chr2D 323076868 323077937 1069 False 987.000000 987 83.4110 2242 3308 1 chr2D.!!$F1 1066
10 TraesCS3D01G470300 chr2A 407739478 407740548 1070 True 966.000000 966 83.0540 2241 3308 1 chr2A.!!$R1 1067

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
230 231 0.038618 GTCCATGGTTTTGCGGGAAC 60.039 55.0 12.58 0.00 0.00 3.62 F
636 637 0.165944 GATCTGGTTCGTTGCGGTTG 59.834 55.0 0.00 0.00 0.00 3.77 F
706 707 0.179056 GGCGCCTATCACTAGCCAAA 60.179 55.0 22.15 0.00 46.48 3.28 F
1272 2376 0.331954 TCACCTCCTCGCTCTACCTT 59.668 55.0 0.00 0.00 0.00 3.50 F
2612 6650 0.035534 TAGTGCAACATCCATGGCGT 60.036 50.0 6.96 3.53 41.43 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1194 2298 0.179009 TGCTCTTGCTTGCTTCCTGT 60.179 50.000 0.00 0.0 40.48 4.00 R
1698 2843 2.607635 GAGTGACGCAGAACAACAAAGA 59.392 45.455 0.00 0.0 0.00 2.52 R
2612 6650 3.304123 GGTACTTGCGCAACACAATGTTA 60.304 43.478 21.02 0.0 38.77 2.41 R
3251 7289 0.399949 ACCAGTGTCCCTTCCAGACA 60.400 55.000 0.00 0.0 41.84 3.41 R
3924 10337 0.036875 AACCTGCTGCCCTACAAGAC 59.963 55.000 0.00 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.286447 GGAGCTCTCCCCTACTGG 57.714 66.667 14.64 0.00 43.94 4.00
22 23 1.621377 GGAGCTCTCCCCTACTGGA 59.379 63.158 14.64 0.00 43.94 3.86
23 24 0.189822 GGAGCTCTCCCCTACTGGAT 59.810 60.000 14.64 0.00 43.94 3.41
24 25 1.413808 GGAGCTCTCCCCTACTGGATT 60.414 57.143 14.64 0.00 43.94 3.01
25 26 2.403561 GAGCTCTCCCCTACTGGATTT 58.596 52.381 6.43 0.00 35.39 2.17
26 27 2.103941 GAGCTCTCCCCTACTGGATTTG 59.896 54.545 6.43 0.00 35.39 2.32
27 28 2.119495 GCTCTCCCCTACTGGATTTGA 58.881 52.381 0.00 0.00 35.39 2.69
28 29 2.708325 GCTCTCCCCTACTGGATTTGAT 59.292 50.000 0.00 0.00 35.39 2.57
29 30 3.137360 GCTCTCCCCTACTGGATTTGATT 59.863 47.826 0.00 0.00 35.39 2.57
30 31 4.385754 GCTCTCCCCTACTGGATTTGATTT 60.386 45.833 0.00 0.00 35.39 2.17
31 32 5.760131 CTCTCCCCTACTGGATTTGATTTT 58.240 41.667 0.00 0.00 35.39 1.82
32 33 5.509498 TCTCCCCTACTGGATTTGATTTTG 58.491 41.667 0.00 0.00 35.39 2.44
33 34 4.023291 TCCCCTACTGGATTTGATTTTGC 58.977 43.478 0.00 0.00 35.39 3.68
34 35 4.026052 CCCCTACTGGATTTGATTTTGCT 58.974 43.478 0.00 0.00 35.39 3.91
35 36 4.142093 CCCCTACTGGATTTGATTTTGCTG 60.142 45.833 0.00 0.00 35.39 4.41
36 37 4.142093 CCCTACTGGATTTGATTTTGCTGG 60.142 45.833 0.00 0.00 35.39 4.85
37 38 4.706476 CCTACTGGATTTGATTTTGCTGGA 59.294 41.667 0.00 0.00 34.57 3.86
38 39 5.185635 CCTACTGGATTTGATTTTGCTGGAA 59.814 40.000 0.00 0.00 34.57 3.53
39 40 4.886579 ACTGGATTTGATTTTGCTGGAAC 58.113 39.130 0.00 0.00 0.00 3.62
40 41 4.590222 ACTGGATTTGATTTTGCTGGAACT 59.410 37.500 0.00 0.00 0.00 3.01
41 42 4.885413 TGGATTTGATTTTGCTGGAACTG 58.115 39.130 0.00 0.00 0.00 3.16
42 43 4.248058 GGATTTGATTTTGCTGGAACTGG 58.752 43.478 0.00 0.00 0.00 4.00
43 44 4.262592 GGATTTGATTTTGCTGGAACTGGT 60.263 41.667 0.00 0.00 0.00 4.00
44 45 3.731652 TTGATTTTGCTGGAACTGGTG 57.268 42.857 0.00 0.00 0.00 4.17
45 46 2.665165 TGATTTTGCTGGAACTGGTGT 58.335 42.857 0.00 0.00 0.00 4.16
46 47 3.030291 TGATTTTGCTGGAACTGGTGTT 58.970 40.909 0.00 0.00 39.42 3.32
47 48 3.450457 TGATTTTGCTGGAACTGGTGTTT 59.550 39.130 0.00 0.00 36.39 2.83
48 49 3.971245 TTTTGCTGGAACTGGTGTTTT 57.029 38.095 0.00 0.00 36.39 2.43
49 50 3.971245 TTTGCTGGAACTGGTGTTTTT 57.029 38.095 0.00 0.00 36.39 1.94
73 74 7.639113 TTTTTGCTGGATCCTCGTATTATTT 57.361 32.000 14.23 0.00 0.00 1.40
74 75 7.639113 TTTTGCTGGATCCTCGTATTATTTT 57.361 32.000 14.23 0.00 0.00 1.82
75 76 6.861065 TTGCTGGATCCTCGTATTATTTTC 57.139 37.500 14.23 0.00 0.00 2.29
76 77 5.305585 TGCTGGATCCTCGTATTATTTTCC 58.694 41.667 14.23 0.00 0.00 3.13
77 78 5.071788 TGCTGGATCCTCGTATTATTTTCCT 59.928 40.000 14.23 0.00 0.00 3.36
78 79 6.269077 TGCTGGATCCTCGTATTATTTTCCTA 59.731 38.462 14.23 0.00 0.00 2.94
79 80 6.590677 GCTGGATCCTCGTATTATTTTCCTAC 59.409 42.308 14.23 0.00 0.00 3.18
80 81 7.606135 TGGATCCTCGTATTATTTTCCTACA 57.394 36.000 14.23 0.00 0.00 2.74
81 82 8.025270 TGGATCCTCGTATTATTTTCCTACAA 57.975 34.615 14.23 0.00 0.00 2.41
82 83 7.929785 TGGATCCTCGTATTATTTTCCTACAAC 59.070 37.037 14.23 0.00 0.00 3.32
83 84 7.387122 GGATCCTCGTATTATTTTCCTACAACC 59.613 40.741 3.84 0.00 0.00 3.77
84 85 7.185318 TCCTCGTATTATTTTCCTACAACCA 57.815 36.000 0.00 0.00 0.00 3.67
85 86 7.043565 TCCTCGTATTATTTTCCTACAACCAC 58.956 38.462 0.00 0.00 0.00 4.16
86 87 7.046033 CCTCGTATTATTTTCCTACAACCACT 58.954 38.462 0.00 0.00 0.00 4.00
87 88 7.011109 CCTCGTATTATTTTCCTACAACCACTG 59.989 40.741 0.00 0.00 0.00 3.66
88 89 6.819649 TCGTATTATTTTCCTACAACCACTGG 59.180 38.462 0.00 0.00 0.00 4.00
89 90 6.819649 CGTATTATTTTCCTACAACCACTGGA 59.180 38.462 0.71 0.00 0.00 3.86
90 91 7.011109 CGTATTATTTTCCTACAACCACTGGAG 59.989 40.741 0.71 0.00 35.46 3.86
91 92 2.561478 TTTCCTACAACCACTGGAGC 57.439 50.000 0.71 0.00 34.14 4.70
92 93 1.729586 TTCCTACAACCACTGGAGCT 58.270 50.000 0.71 0.00 34.14 4.09
93 94 1.267121 TCCTACAACCACTGGAGCTC 58.733 55.000 4.71 4.71 34.14 4.09
94 95 1.203187 TCCTACAACCACTGGAGCTCT 60.203 52.381 14.64 0.00 34.14 4.09
95 96 1.205893 CCTACAACCACTGGAGCTCTC 59.794 57.143 14.64 4.40 34.14 3.20
96 97 2.175202 CTACAACCACTGGAGCTCTCT 58.825 52.381 14.64 0.00 0.00 3.10
97 98 1.428869 ACAACCACTGGAGCTCTCTT 58.571 50.000 14.64 0.00 0.00 2.85
98 99 1.771255 ACAACCACTGGAGCTCTCTTT 59.229 47.619 14.64 0.00 0.00 2.52
99 100 2.173569 ACAACCACTGGAGCTCTCTTTT 59.826 45.455 14.64 0.00 0.00 2.27
100 101 3.217626 CAACCACTGGAGCTCTCTTTTT 58.782 45.455 14.64 0.00 0.00 1.94
123 124 7.769272 TTTCTACTGAATTTTGTTTTGCTGG 57.231 32.000 0.00 0.00 31.56 4.85
124 125 6.707440 TCTACTGAATTTTGTTTTGCTGGA 57.293 33.333 0.00 0.00 0.00 3.86
125 126 7.106439 TCTACTGAATTTTGTTTTGCTGGAA 57.894 32.000 0.00 0.00 0.00 3.53
126 127 6.978080 TCTACTGAATTTTGTTTTGCTGGAAC 59.022 34.615 0.00 0.00 0.00 3.62
127 128 5.733676 ACTGAATTTTGTTTTGCTGGAACT 58.266 33.333 0.00 0.00 0.00 3.01
128 129 6.872920 ACTGAATTTTGTTTTGCTGGAACTA 58.127 32.000 0.00 0.00 0.00 2.24
129 130 6.980397 ACTGAATTTTGTTTTGCTGGAACTAG 59.020 34.615 0.00 0.00 0.00 2.57
130 131 6.872920 TGAATTTTGTTTTGCTGGAACTAGT 58.127 32.000 0.00 0.00 0.00 2.57
131 132 7.327214 TGAATTTTGTTTTGCTGGAACTAGTT 58.673 30.769 8.13 8.13 0.00 2.24
132 133 7.277539 TGAATTTTGTTTTGCTGGAACTAGTTG 59.722 33.333 14.14 0.00 0.00 3.16
133 134 4.647424 TTGTTTTGCTGGAACTAGTTGG 57.353 40.909 14.14 4.27 0.00 3.77
134 135 3.892284 TGTTTTGCTGGAACTAGTTGGA 58.108 40.909 14.14 0.00 0.00 3.53
135 136 4.274147 TGTTTTGCTGGAACTAGTTGGAA 58.726 39.130 14.14 3.48 0.00 3.53
136 137 4.097286 TGTTTTGCTGGAACTAGTTGGAAC 59.903 41.667 14.14 7.41 0.00 3.62
137 138 2.561478 TGCTGGAACTAGTTGGAACC 57.439 50.000 14.14 8.49 0.00 3.62
138 139 2.054799 TGCTGGAACTAGTTGGAACCT 58.945 47.619 14.14 0.00 0.00 3.50
139 140 3.244582 TGCTGGAACTAGTTGGAACCTA 58.755 45.455 14.14 0.00 0.00 3.08
140 141 3.260884 TGCTGGAACTAGTTGGAACCTAG 59.739 47.826 14.14 6.56 0.00 3.02
141 142 3.261137 GCTGGAACTAGTTGGAACCTAGT 59.739 47.826 14.14 0.00 35.66 2.57
142 143 4.465305 GCTGGAACTAGTTGGAACCTAGTA 59.535 45.833 14.14 0.00 34.00 1.82
143 144 5.046807 GCTGGAACTAGTTGGAACCTAGTAA 60.047 44.000 14.14 0.00 34.00 2.24
144 145 6.519551 GCTGGAACTAGTTGGAACCTAGTAAA 60.520 42.308 14.14 0.00 34.00 2.01
145 146 7.563724 TGGAACTAGTTGGAACCTAGTAAAT 57.436 36.000 14.14 0.00 34.00 1.40
146 147 7.981142 TGGAACTAGTTGGAACCTAGTAAATT 58.019 34.615 14.14 0.00 34.00 1.82
147 148 7.881232 TGGAACTAGTTGGAACCTAGTAAATTG 59.119 37.037 14.14 0.00 34.00 2.32
148 149 7.148289 GGAACTAGTTGGAACCTAGTAAATTGC 60.148 40.741 14.14 0.00 34.00 3.56
149 150 7.017319 ACTAGTTGGAACCTAGTAAATTGCT 57.983 36.000 0.00 0.00 32.78 3.91
150 151 6.879458 ACTAGTTGGAACCTAGTAAATTGCTG 59.121 38.462 0.00 0.00 32.78 4.41
151 152 5.010282 AGTTGGAACCTAGTAAATTGCTGG 58.990 41.667 0.00 0.00 0.00 4.85
152 153 4.919774 TGGAACCTAGTAAATTGCTGGA 57.080 40.909 0.00 0.00 0.00 3.86
153 154 5.249780 TGGAACCTAGTAAATTGCTGGAA 57.750 39.130 0.00 0.00 0.00 3.53
154 155 5.007682 TGGAACCTAGTAAATTGCTGGAAC 58.992 41.667 0.00 0.00 0.00 3.62
155 156 4.398358 GGAACCTAGTAAATTGCTGGAACC 59.602 45.833 0.00 1.74 0.00 3.62
156 157 3.606687 ACCTAGTAAATTGCTGGAACCG 58.393 45.455 0.00 0.00 0.00 4.44
157 158 3.008704 ACCTAGTAAATTGCTGGAACCGT 59.991 43.478 0.00 0.00 0.00 4.83
158 159 3.621715 CCTAGTAAATTGCTGGAACCGTC 59.378 47.826 0.00 0.00 0.00 4.79
159 160 3.418684 AGTAAATTGCTGGAACCGTCT 57.581 42.857 0.00 0.00 0.00 4.18
160 161 3.751518 AGTAAATTGCTGGAACCGTCTT 58.248 40.909 0.00 0.00 0.00 3.01
161 162 4.142038 AGTAAATTGCTGGAACCGTCTTT 58.858 39.130 0.00 0.00 0.00 2.52
162 163 4.583073 AGTAAATTGCTGGAACCGTCTTTT 59.417 37.500 0.00 0.00 0.00 2.27
163 164 5.766174 AGTAAATTGCTGGAACCGTCTTTTA 59.234 36.000 0.00 0.00 0.00 1.52
164 165 5.722021 AAATTGCTGGAACCGTCTTTTAT 57.278 34.783 0.00 0.00 0.00 1.40
165 166 5.722021 AATTGCTGGAACCGTCTTTTATT 57.278 34.783 0.00 0.00 0.00 1.40
166 167 5.722021 ATTGCTGGAACCGTCTTTTATTT 57.278 34.783 0.00 0.00 0.00 1.40
167 168 5.523438 TTGCTGGAACCGTCTTTTATTTT 57.477 34.783 0.00 0.00 0.00 1.82
168 169 5.523438 TGCTGGAACCGTCTTTTATTTTT 57.477 34.783 0.00 0.00 0.00 1.94
169 170 5.285651 TGCTGGAACCGTCTTTTATTTTTG 58.714 37.500 0.00 0.00 0.00 2.44
170 171 4.149922 GCTGGAACCGTCTTTTATTTTTGC 59.850 41.667 0.00 0.00 0.00 3.68
171 172 5.523438 TGGAACCGTCTTTTATTTTTGCT 57.477 34.783 0.00 0.00 0.00 3.91
172 173 6.636562 TGGAACCGTCTTTTATTTTTGCTA 57.363 33.333 0.00 0.00 0.00 3.49
173 174 6.440436 TGGAACCGTCTTTTATTTTTGCTAC 58.560 36.000 0.00 0.00 0.00 3.58
174 175 6.039493 TGGAACCGTCTTTTATTTTTGCTACA 59.961 34.615 0.00 0.00 0.00 2.74
175 176 6.919115 GGAACCGTCTTTTATTTTTGCTACAA 59.081 34.615 0.00 0.00 0.00 2.41
176 177 7.096353 GGAACCGTCTTTTATTTTTGCTACAAC 60.096 37.037 0.00 0.00 0.00 3.32
177 178 6.210796 ACCGTCTTTTATTTTTGCTACAACC 58.789 36.000 0.00 0.00 0.00 3.77
178 179 5.341196 CCGTCTTTTATTTTTGCTACAACCG 59.659 40.000 0.00 0.00 0.00 4.44
179 180 5.341196 CGTCTTTTATTTTTGCTACAACCGG 59.659 40.000 0.00 0.00 0.00 5.28
180 181 5.118050 GTCTTTTATTTTTGCTACAACCGGC 59.882 40.000 0.00 0.00 0.00 6.13
181 182 3.579335 TTATTTTTGCTACAACCGGCC 57.421 42.857 0.00 0.00 0.00 6.13
182 183 1.333177 ATTTTTGCTACAACCGGCCA 58.667 45.000 0.00 0.00 0.00 5.36
183 184 1.112113 TTTTTGCTACAACCGGCCAA 58.888 45.000 0.00 0.00 0.00 4.52
184 185 1.112113 TTTTGCTACAACCGGCCAAA 58.888 45.000 0.00 0.00 0.00 3.28
185 186 1.333177 TTTGCTACAACCGGCCAAAT 58.667 45.000 0.00 0.00 0.00 2.32
186 187 1.333177 TTGCTACAACCGGCCAAATT 58.667 45.000 0.00 0.00 0.00 1.82
187 188 1.333177 TGCTACAACCGGCCAAATTT 58.667 45.000 0.00 0.00 0.00 1.82
188 189 1.689273 TGCTACAACCGGCCAAATTTT 59.311 42.857 0.00 0.00 0.00 1.82
189 190 2.103263 TGCTACAACCGGCCAAATTTTT 59.897 40.909 0.00 0.00 0.00 1.94
190 191 3.321111 TGCTACAACCGGCCAAATTTTTA 59.679 39.130 0.00 0.00 0.00 1.52
191 192 3.924073 GCTACAACCGGCCAAATTTTTAG 59.076 43.478 0.00 0.00 0.00 1.85
192 193 2.761559 ACAACCGGCCAAATTTTTAGC 58.238 42.857 0.00 0.00 0.00 3.09
193 194 2.367241 ACAACCGGCCAAATTTTTAGCT 59.633 40.909 0.00 0.00 0.00 3.32
194 195 3.574826 ACAACCGGCCAAATTTTTAGCTA 59.425 39.130 0.00 0.00 0.00 3.32
195 196 3.861276 ACCGGCCAAATTTTTAGCTAC 57.139 42.857 0.00 0.00 0.00 3.58
196 197 3.158676 ACCGGCCAAATTTTTAGCTACA 58.841 40.909 0.00 0.00 0.00 2.74
197 198 3.767131 ACCGGCCAAATTTTTAGCTACAT 59.233 39.130 0.00 0.00 0.00 2.29
198 199 4.221924 ACCGGCCAAATTTTTAGCTACATT 59.778 37.500 0.00 0.00 0.00 2.71
199 200 4.803613 CCGGCCAAATTTTTAGCTACATTC 59.196 41.667 2.24 0.00 0.00 2.67
200 201 4.803613 CGGCCAAATTTTTAGCTACATTCC 59.196 41.667 2.24 0.00 0.00 3.01
201 202 4.803613 GGCCAAATTTTTAGCTACATTCCG 59.196 41.667 0.00 0.00 0.00 4.30
202 203 4.803613 GCCAAATTTTTAGCTACATTCCGG 59.196 41.667 0.00 0.00 0.00 5.14
203 204 4.803613 CCAAATTTTTAGCTACATTCCGGC 59.196 41.667 0.00 0.00 0.00 6.13
204 205 3.963383 ATTTTTAGCTACATTCCGGCG 57.037 42.857 0.00 0.00 0.00 6.46
205 206 2.676632 TTTTAGCTACATTCCGGCGA 57.323 45.000 9.30 0.00 0.00 5.54
206 207 1.930567 TTTAGCTACATTCCGGCGAC 58.069 50.000 9.30 0.00 0.00 5.19
218 219 2.511600 GGCGACGAAGGTCCATGG 60.512 66.667 4.97 4.97 40.17 3.66
219 220 2.264794 GCGACGAAGGTCCATGGT 59.735 61.111 12.58 0.00 40.17 3.55
220 221 1.375523 GCGACGAAGGTCCATGGTT 60.376 57.895 12.58 0.00 40.17 3.67
221 222 0.953960 GCGACGAAGGTCCATGGTTT 60.954 55.000 12.58 5.13 40.17 3.27
222 223 1.519408 CGACGAAGGTCCATGGTTTT 58.481 50.000 12.58 4.75 40.17 2.43
223 224 1.196808 CGACGAAGGTCCATGGTTTTG 59.803 52.381 12.58 11.10 40.17 2.44
224 225 0.958822 ACGAAGGTCCATGGTTTTGC 59.041 50.000 12.58 0.00 0.00 3.68
225 226 0.109781 CGAAGGTCCATGGTTTTGCG 60.110 55.000 12.58 8.06 0.00 4.85
226 227 0.243636 GAAGGTCCATGGTTTTGCGG 59.756 55.000 12.58 0.00 0.00 5.69
227 228 1.184970 AAGGTCCATGGTTTTGCGGG 61.185 55.000 12.58 0.00 0.00 6.13
228 229 1.605165 GGTCCATGGTTTTGCGGGA 60.605 57.895 12.58 0.00 0.00 5.14
229 230 1.182385 GGTCCATGGTTTTGCGGGAA 61.182 55.000 12.58 0.00 0.00 3.97
230 231 0.038618 GTCCATGGTTTTGCGGGAAC 60.039 55.000 12.58 0.00 0.00 3.62
245 246 2.343101 GGGAACCGGCTAAAATTTTGC 58.657 47.619 13.76 13.66 40.86 3.68
246 247 2.028476 GGGAACCGGCTAAAATTTTGCT 60.028 45.455 13.76 0.22 40.86 3.91
247 248 3.556213 GGGAACCGGCTAAAATTTTGCTT 60.556 43.478 13.76 6.02 40.86 3.91
248 249 3.678072 GGAACCGGCTAAAATTTTGCTTC 59.322 43.478 13.76 12.79 0.00 3.86
249 250 4.303282 GAACCGGCTAAAATTTTGCTTCA 58.697 39.130 13.76 0.00 0.00 3.02
250 251 4.329462 ACCGGCTAAAATTTTGCTTCAA 57.671 36.364 13.76 0.00 0.00 2.69
251 252 4.055360 ACCGGCTAAAATTTTGCTTCAAC 58.945 39.130 13.76 2.28 0.00 3.18
252 253 4.202212 ACCGGCTAAAATTTTGCTTCAACT 60.202 37.500 13.76 0.00 0.00 3.16
253 254 4.150451 CCGGCTAAAATTTTGCTTCAACTG 59.850 41.667 13.76 0.86 0.00 3.16
254 255 4.981674 CGGCTAAAATTTTGCTTCAACTGA 59.018 37.500 13.76 0.00 0.00 3.41
255 256 5.107875 CGGCTAAAATTTTGCTTCAACTGAC 60.108 40.000 13.76 0.00 0.00 3.51
256 257 5.985530 GGCTAAAATTTTGCTTCAACTGACT 59.014 36.000 13.76 0.00 0.00 3.41
257 258 6.479990 GGCTAAAATTTTGCTTCAACTGACTT 59.520 34.615 13.76 0.00 0.00 3.01
258 259 7.011389 GGCTAAAATTTTGCTTCAACTGACTTT 59.989 33.333 13.76 0.00 0.00 2.66
259 260 8.390354 GCTAAAATTTTGCTTCAACTGACTTTT 58.610 29.630 13.76 0.00 0.00 2.27
286 287 9.651913 TTTTTGTTTTTCTTAGTTGCTGAGATT 57.348 25.926 0.00 0.00 0.00 2.40
287 288 9.651913 TTTTGTTTTTCTTAGTTGCTGAGATTT 57.348 25.926 0.00 0.00 0.00 2.17
288 289 9.651913 TTTGTTTTTCTTAGTTGCTGAGATTTT 57.348 25.926 0.00 0.00 0.00 1.82
289 290 9.651913 TTGTTTTTCTTAGTTGCTGAGATTTTT 57.348 25.926 0.00 0.00 0.00 1.94
310 311 5.982465 TTTTTGTGCTGAAAAATAGTGCC 57.018 34.783 3.05 0.00 31.39 5.01
311 312 2.987413 TGTGCTGAAAAATAGTGCCG 57.013 45.000 0.00 0.00 0.00 5.69
312 313 1.068610 TGTGCTGAAAAATAGTGCCGC 60.069 47.619 0.00 0.00 0.00 6.53
313 314 1.068610 GTGCTGAAAAATAGTGCCGCA 60.069 47.619 0.00 0.00 0.00 5.69
314 315 1.611006 TGCTGAAAAATAGTGCCGCAA 59.389 42.857 0.00 0.00 0.00 4.85
315 316 2.035193 TGCTGAAAAATAGTGCCGCAAA 59.965 40.909 0.00 0.00 0.00 3.68
316 317 3.056304 GCTGAAAAATAGTGCCGCAAAA 58.944 40.909 0.00 0.00 0.00 2.44
317 318 3.679502 GCTGAAAAATAGTGCCGCAAAAT 59.320 39.130 0.00 0.00 0.00 1.82
318 319 4.201618 GCTGAAAAATAGTGCCGCAAAATC 60.202 41.667 0.00 0.00 0.00 2.17
319 320 3.917380 TGAAAAATAGTGCCGCAAAATCG 59.083 39.130 0.00 0.00 0.00 3.34
320 321 3.840890 AAAATAGTGCCGCAAAATCGA 57.159 38.095 0.00 0.00 0.00 3.59
321 322 2.825086 AATAGTGCCGCAAAATCGAC 57.175 45.000 0.00 0.00 0.00 4.20
322 323 0.650512 ATAGTGCCGCAAAATCGACG 59.349 50.000 0.00 0.00 0.00 5.12
323 324 0.388778 TAGTGCCGCAAAATCGACGA 60.389 50.000 0.00 0.00 0.00 4.20
324 325 1.019278 AGTGCCGCAAAATCGACGAT 61.019 50.000 4.05 4.05 0.00 3.73
325 326 0.857311 GTGCCGCAAAATCGACGATG 60.857 55.000 11.83 1.44 0.00 3.84
326 327 1.297598 GCCGCAAAATCGACGATGG 60.298 57.895 11.83 8.88 0.00 3.51
327 328 1.297598 CCGCAAAATCGACGATGGC 60.298 57.895 11.83 14.11 0.00 4.40
328 329 1.648165 CGCAAAATCGACGATGGCG 60.648 57.895 26.22 26.22 44.79 5.69
329 330 1.297598 GCAAAATCGACGATGGCGG 60.298 57.895 11.83 3.11 43.17 6.13
330 331 1.977594 GCAAAATCGACGATGGCGGT 61.978 55.000 11.83 0.00 43.17 5.68
331 332 0.247655 CAAAATCGACGATGGCGGTG 60.248 55.000 11.83 2.00 43.17 4.94
332 333 0.390603 AAAATCGACGATGGCGGTGA 60.391 50.000 11.83 0.00 43.17 4.02
333 334 0.806102 AAATCGACGATGGCGGTGAG 60.806 55.000 11.83 0.00 43.17 3.51
363 364 2.436646 AAGCCGTGCTTCGATGGG 60.437 61.111 5.44 0.00 46.77 4.00
366 367 3.197790 CCGTGCTTCGATGGGCTG 61.198 66.667 0.00 0.00 42.86 4.85
367 368 3.869272 CGTGCTTCGATGGGCTGC 61.869 66.667 0.00 0.00 42.86 5.25
368 369 2.437359 GTGCTTCGATGGGCTGCT 60.437 61.111 0.00 0.00 0.00 4.24
369 370 2.437180 TGCTTCGATGGGCTGCTG 60.437 61.111 0.00 0.00 0.00 4.41
370 371 3.207669 GCTTCGATGGGCTGCTGG 61.208 66.667 0.00 0.00 0.00 4.85
371 372 2.586245 CTTCGATGGGCTGCTGGA 59.414 61.111 0.00 0.00 0.00 3.86
372 373 1.078214 CTTCGATGGGCTGCTGGAA 60.078 57.895 0.00 0.00 0.00 3.53
373 374 1.372087 CTTCGATGGGCTGCTGGAAC 61.372 60.000 0.00 0.00 0.00 3.62
374 375 2.819984 TTCGATGGGCTGCTGGAACC 62.820 60.000 0.00 0.00 0.00 3.62
375 376 2.825836 GATGGGCTGCTGGAACCG 60.826 66.667 0.00 0.00 0.00 4.44
376 377 4.431131 ATGGGCTGCTGGAACCGG 62.431 66.667 0.00 0.00 0.00 5.28
383 384 4.056125 GCTGGAACCGGCTTTGGC 62.056 66.667 16.37 0.00 44.39 4.52
384 385 2.597217 CTGGAACCGGCTTTGGCA 60.597 61.111 0.00 0.00 40.87 4.92
385 386 2.597217 TGGAACCGGCTTTGGCAG 60.597 61.111 0.00 0.00 40.87 4.85
399 400 2.410469 GCAGCAAGCGCCATTAGG 59.590 61.111 2.29 0.00 39.83 2.69
412 413 3.487563 CCATTAGGCTTTGGAAACGAC 57.512 47.619 9.89 0.00 34.81 4.34
413 414 2.159572 CCATTAGGCTTTGGAAACGACG 60.160 50.000 9.89 0.00 34.81 5.12
414 415 1.515081 TTAGGCTTTGGAAACGACGG 58.485 50.000 0.00 0.00 0.00 4.79
415 416 0.393820 TAGGCTTTGGAAACGACGGT 59.606 50.000 0.00 0.00 0.00 4.83
416 417 1.164041 AGGCTTTGGAAACGACGGTG 61.164 55.000 0.00 0.00 0.00 4.94
417 418 1.161563 GGCTTTGGAAACGACGGTGA 61.162 55.000 0.00 0.00 0.00 4.02
418 419 0.234884 GCTTTGGAAACGACGGTGAG 59.765 55.000 0.00 0.00 0.00 3.51
419 420 1.860676 CTTTGGAAACGACGGTGAGA 58.139 50.000 0.00 0.00 0.00 3.27
420 421 2.413837 CTTTGGAAACGACGGTGAGAT 58.586 47.619 0.00 0.00 0.00 2.75
421 422 2.536761 TTGGAAACGACGGTGAGATT 57.463 45.000 0.00 0.00 0.00 2.40
422 423 1.790755 TGGAAACGACGGTGAGATTG 58.209 50.000 0.00 0.00 0.00 2.67
423 424 1.076332 GGAAACGACGGTGAGATTGG 58.924 55.000 0.00 0.00 0.00 3.16
424 425 1.337447 GGAAACGACGGTGAGATTGGA 60.337 52.381 0.00 0.00 0.00 3.53
425 426 2.409975 GAAACGACGGTGAGATTGGAA 58.590 47.619 0.00 0.00 0.00 3.53
426 427 2.080286 AACGACGGTGAGATTGGAAG 57.920 50.000 0.00 0.00 0.00 3.46
427 428 1.254026 ACGACGGTGAGATTGGAAGA 58.746 50.000 0.00 0.00 0.00 2.87
428 429 1.825474 ACGACGGTGAGATTGGAAGAT 59.175 47.619 0.00 0.00 0.00 2.40
429 430 2.159226 ACGACGGTGAGATTGGAAGATC 60.159 50.000 0.00 0.00 0.00 2.75
430 431 2.099921 CGACGGTGAGATTGGAAGATCT 59.900 50.000 0.00 0.00 39.04 2.75
431 432 3.429547 CGACGGTGAGATTGGAAGATCTT 60.430 47.826 7.95 7.95 36.54 2.40
432 433 3.866651 ACGGTGAGATTGGAAGATCTTG 58.133 45.455 14.00 0.00 36.54 3.02
433 434 3.261897 ACGGTGAGATTGGAAGATCTTGT 59.738 43.478 14.00 0.00 36.54 3.16
434 435 3.620374 CGGTGAGATTGGAAGATCTTGTG 59.380 47.826 14.00 0.00 36.54 3.33
435 436 4.621510 CGGTGAGATTGGAAGATCTTGTGA 60.622 45.833 14.00 0.00 36.54 3.58
436 437 4.633565 GGTGAGATTGGAAGATCTTGTGAC 59.366 45.833 14.00 0.00 36.54 3.67
437 438 4.328440 GTGAGATTGGAAGATCTTGTGACG 59.672 45.833 14.00 0.00 36.54 4.35
438 439 4.220602 TGAGATTGGAAGATCTTGTGACGA 59.779 41.667 14.00 0.79 36.54 4.20
439 440 4.499183 AGATTGGAAGATCTTGTGACGAC 58.501 43.478 14.00 0.00 32.54 4.34
440 441 2.347697 TGGAAGATCTTGTGACGACG 57.652 50.000 14.00 0.00 0.00 5.12
441 442 1.067846 TGGAAGATCTTGTGACGACGG 60.068 52.381 14.00 0.00 0.00 4.79
442 443 1.630148 GAAGATCTTGTGACGACGGG 58.370 55.000 14.00 0.00 0.00 5.28
443 444 0.246635 AAGATCTTGTGACGACGGGG 59.753 55.000 7.30 0.00 0.00 5.73
444 445 0.611062 AGATCTTGTGACGACGGGGA 60.611 55.000 0.00 0.00 0.00 4.81
445 446 0.458025 GATCTTGTGACGACGGGGAC 60.458 60.000 0.00 0.00 0.00 4.46
460 461 4.838486 GACGTCGAGCTGGGCGAG 62.838 72.222 29.56 9.86 38.59 5.03
483 484 4.266070 GCGAGCTACGGCGATGGA 62.266 66.667 16.62 0.00 44.37 3.41
484 485 2.353607 CGAGCTACGGCGATGGAC 60.354 66.667 16.62 0.69 44.37 4.02
491 492 4.873129 CGGCGATGGACGTGGAGG 62.873 72.222 0.00 0.00 40.74 4.30
492 493 3.458163 GGCGATGGACGTGGAGGA 61.458 66.667 0.00 0.00 44.60 3.71
493 494 2.202756 GCGATGGACGTGGAGGAC 60.203 66.667 0.00 0.00 44.60 3.85
522 523 4.873129 CGGCGATGGACGTGGAGG 62.873 72.222 0.00 0.00 40.74 4.30
523 524 3.458163 GGCGATGGACGTGGAGGA 61.458 66.667 0.00 0.00 44.60 3.71
524 525 2.202756 GCGATGGACGTGGAGGAC 60.203 66.667 0.00 0.00 44.60 3.85
532 533 3.680786 CGTGGAGGACGCTGGTGA 61.681 66.667 0.00 0.00 42.21 4.02
533 534 2.262915 GTGGAGGACGCTGGTGAG 59.737 66.667 0.00 0.00 0.00 3.51
534 535 3.695606 TGGAGGACGCTGGTGAGC 61.696 66.667 0.00 0.00 42.37 4.26
535 536 3.386237 GGAGGACGCTGGTGAGCT 61.386 66.667 0.00 0.00 43.77 4.09
536 537 2.125753 GAGGACGCTGGTGAGCTG 60.126 66.667 0.00 0.00 43.77 4.24
537 538 3.655810 GAGGACGCTGGTGAGCTGG 62.656 68.421 0.00 0.00 43.77 4.85
545 546 4.643387 GGTGAGCTGGCGGTGGTT 62.643 66.667 0.00 0.00 0.00 3.67
546 547 3.050275 GTGAGCTGGCGGTGGTTC 61.050 66.667 0.00 0.00 0.00 3.62
547 548 4.680237 TGAGCTGGCGGTGGTTCG 62.680 66.667 0.00 0.00 0.00 3.95
548 549 4.373116 GAGCTGGCGGTGGTTCGA 62.373 66.667 0.00 0.00 0.00 3.71
549 550 4.379243 AGCTGGCGGTGGTTCGAG 62.379 66.667 0.00 0.00 0.00 4.04
550 551 4.681978 GCTGGCGGTGGTTCGAGT 62.682 66.667 0.00 0.00 0.00 4.18
551 552 2.432628 CTGGCGGTGGTTCGAGTC 60.433 66.667 0.00 0.00 0.00 3.36
552 553 2.915659 TGGCGGTGGTTCGAGTCT 60.916 61.111 0.00 0.00 0.00 3.24
553 554 2.432628 GGCGGTGGTTCGAGTCTG 60.433 66.667 0.00 0.00 0.00 3.51
554 555 2.432628 GCGGTGGTTCGAGTCTGG 60.433 66.667 0.00 0.00 0.00 3.86
555 556 2.927580 GCGGTGGTTCGAGTCTGGA 61.928 63.158 0.00 0.00 0.00 3.86
556 557 1.890894 CGGTGGTTCGAGTCTGGAT 59.109 57.895 0.00 0.00 0.00 3.41
557 558 1.100510 CGGTGGTTCGAGTCTGGATA 58.899 55.000 0.00 0.00 0.00 2.59
558 559 1.202268 CGGTGGTTCGAGTCTGGATAC 60.202 57.143 0.00 0.00 0.00 2.24
559 560 1.202268 GGTGGTTCGAGTCTGGATACG 60.202 57.143 0.00 0.00 42.51 3.06
561 562 0.384669 GGTTCGAGTCTGGATACGGG 59.615 60.000 0.00 0.00 45.79 5.28
566 567 3.456317 GTCTGGATACGGGCGGAT 58.544 61.111 0.00 0.00 45.79 4.18
567 568 1.289380 GTCTGGATACGGGCGGATC 59.711 63.158 0.00 0.00 45.79 3.36
568 569 1.153061 TCTGGATACGGGCGGATCT 59.847 57.895 0.00 0.00 45.79 2.75
569 570 1.179174 TCTGGATACGGGCGGATCTG 61.179 60.000 0.00 0.00 45.79 2.90
570 571 2.159819 CTGGATACGGGCGGATCTGG 62.160 65.000 3.14 0.00 40.24 3.86
571 572 2.048127 GATACGGGCGGATCTGGC 60.048 66.667 19.57 19.57 32.84 4.85
579 580 2.892425 CGGATCTGGCCGTGCTTC 60.892 66.667 0.00 0.00 46.07 3.86
580 581 2.268920 GGATCTGGCCGTGCTTCA 59.731 61.111 0.00 0.00 0.00 3.02
581 582 1.377202 GGATCTGGCCGTGCTTCAA 60.377 57.895 0.00 0.00 0.00 2.69
582 583 1.372087 GGATCTGGCCGTGCTTCAAG 61.372 60.000 0.00 0.00 0.00 3.02
583 584 1.986575 GATCTGGCCGTGCTTCAAGC 61.987 60.000 1.04 1.04 42.82 4.01
584 585 3.741476 CTGGCCGTGCTTCAAGCC 61.741 66.667 7.01 1.37 41.51 4.35
586 587 3.294493 GGCCGTGCTTCAAGCCAA 61.294 61.111 7.01 0.00 45.07 4.52
587 588 2.639327 GGCCGTGCTTCAAGCCAAT 61.639 57.895 7.01 0.00 45.07 3.16
588 589 1.444895 GCCGTGCTTCAAGCCAATG 60.445 57.895 7.01 0.00 41.51 2.82
589 590 1.213537 CCGTGCTTCAAGCCAATGG 59.786 57.895 7.01 0.00 41.51 3.16
590 591 1.526575 CCGTGCTTCAAGCCAATGGT 61.527 55.000 7.01 0.00 41.51 3.55
591 592 0.387622 CGTGCTTCAAGCCAATGGTG 60.388 55.000 7.01 0.00 41.51 4.17
592 593 0.675633 GTGCTTCAAGCCAATGGTGT 59.324 50.000 7.01 0.00 41.51 4.16
593 594 1.069049 GTGCTTCAAGCCAATGGTGTT 59.931 47.619 7.01 0.00 41.51 3.32
594 595 1.761784 TGCTTCAAGCCAATGGTGTTT 59.238 42.857 7.01 0.00 41.51 2.83
595 596 2.170187 TGCTTCAAGCCAATGGTGTTTT 59.830 40.909 7.01 0.00 41.51 2.43
596 597 3.205338 GCTTCAAGCCAATGGTGTTTTT 58.795 40.909 0.00 0.00 34.48 1.94
612 613 3.849064 TTTTTGGGCTGGACACGG 58.151 55.556 0.00 0.00 0.00 4.94
613 614 1.227664 TTTTTGGGCTGGACACGGA 59.772 52.632 0.00 0.00 0.00 4.69
614 615 0.821711 TTTTTGGGCTGGACACGGAG 60.822 55.000 0.00 0.00 0.00 4.63
615 616 3.842925 TTTGGGCTGGACACGGAGC 62.843 63.158 0.00 0.00 34.23 4.70
619 620 4.148825 GCTGGACACGGAGCGGAT 62.149 66.667 0.00 0.00 0.00 4.18
620 621 2.105128 CTGGACACGGAGCGGATC 59.895 66.667 0.00 0.00 0.00 3.36
621 622 2.362503 TGGACACGGAGCGGATCT 60.363 61.111 0.00 0.00 0.00 2.75
622 623 2.105128 GGACACGGAGCGGATCTG 59.895 66.667 0.00 0.00 40.48 2.90
623 624 2.105128 GACACGGAGCGGATCTGG 59.895 66.667 7.05 0.00 38.77 3.86
624 625 2.680352 ACACGGAGCGGATCTGGT 60.680 61.111 5.79 5.79 38.77 4.00
625 626 2.227089 GACACGGAGCGGATCTGGTT 62.227 60.000 7.84 0.00 38.77 3.67
626 627 1.519455 CACGGAGCGGATCTGGTTC 60.519 63.158 7.84 4.62 38.77 3.62
627 628 2.278857 CGGAGCGGATCTGGTTCG 60.279 66.667 19.37 19.37 31.29 3.95
628 629 2.893398 GGAGCGGATCTGGTTCGT 59.107 61.111 7.84 0.00 0.00 3.85
629 630 1.218316 GGAGCGGATCTGGTTCGTT 59.782 57.895 7.84 0.00 0.00 3.85
630 631 1.084370 GGAGCGGATCTGGTTCGTTG 61.084 60.000 7.84 0.00 0.00 4.10
631 632 1.696832 GAGCGGATCTGGTTCGTTGC 61.697 60.000 7.84 0.00 0.00 4.17
632 633 3.081133 CGGATCTGGTTCGTTGCG 58.919 61.111 0.00 0.00 0.00 4.85
633 634 2.452813 CGGATCTGGTTCGTTGCGG 61.453 63.158 0.00 0.00 0.00 5.69
634 635 1.375523 GGATCTGGTTCGTTGCGGT 60.376 57.895 0.00 0.00 0.00 5.68
635 636 0.953960 GGATCTGGTTCGTTGCGGTT 60.954 55.000 0.00 0.00 0.00 4.44
636 637 0.165944 GATCTGGTTCGTTGCGGTTG 59.834 55.000 0.00 0.00 0.00 3.77
637 638 1.852067 ATCTGGTTCGTTGCGGTTGC 61.852 55.000 0.00 0.00 43.20 4.17
638 639 3.536498 CTGGTTCGTTGCGGTTGCC 62.536 63.158 0.00 0.00 41.78 4.52
639 640 4.337060 GGTTCGTTGCGGTTGCCC 62.337 66.667 0.00 0.00 41.78 5.36
649 650 2.591715 GGTTGCCCGATCGGATGG 60.592 66.667 35.42 19.54 37.50 3.51
650 651 3.279875 GTTGCCCGATCGGATGGC 61.280 66.667 35.42 28.09 45.56 4.40
651 652 3.479203 TTGCCCGATCGGATGGCT 61.479 61.111 35.42 0.00 45.56 4.75
652 653 3.755526 TTGCCCGATCGGATGGCTG 62.756 63.158 35.42 18.02 45.56 4.85
654 655 4.996434 CCCGATCGGATGGCTGCC 62.996 72.222 35.42 12.87 37.50 4.85
655 656 4.240103 CCGATCGGATGGCTGCCA 62.240 66.667 30.62 25.65 38.19 4.92
656 657 2.664185 CGATCGGATGGCTGCCAG 60.664 66.667 27.20 13.66 36.75 4.85
657 658 2.281345 GATCGGATGGCTGCCAGG 60.281 66.667 27.20 17.74 36.75 4.45
658 659 4.575973 ATCGGATGGCTGCCAGGC 62.576 66.667 27.20 19.97 41.77 4.85
674 675 4.084888 GCGTCCGGCCGAAAGTTG 62.085 66.667 30.73 8.93 34.80 3.16
675 676 3.419759 CGTCCGGCCGAAAGTTGG 61.420 66.667 30.73 8.04 0.00 3.77
676 677 3.053896 GTCCGGCCGAAAGTTGGG 61.054 66.667 30.73 7.15 0.00 4.12
700 701 3.973516 CGCCGGCGCCTATCACTA 61.974 66.667 38.48 0.00 0.00 2.74
701 702 2.049063 GCCGGCGCCTATCACTAG 60.049 66.667 26.68 5.71 0.00 2.57
702 703 2.049063 CCGGCGCCTATCACTAGC 60.049 66.667 26.68 0.00 0.00 3.42
703 704 2.049063 CGGCGCCTATCACTAGCC 60.049 66.667 26.68 0.00 44.00 3.93
704 705 3.138625 GGCGCCTATCACTAGCCA 58.861 61.111 22.15 0.00 46.48 4.75
705 706 1.445942 GGCGCCTATCACTAGCCAA 59.554 57.895 22.15 0.00 46.48 4.52
706 707 0.179056 GGCGCCTATCACTAGCCAAA 60.179 55.000 22.15 0.00 46.48 3.28
707 708 1.663695 GCGCCTATCACTAGCCAAAA 58.336 50.000 0.00 0.00 0.00 2.44
708 709 2.014128 GCGCCTATCACTAGCCAAAAA 58.986 47.619 0.00 0.00 0.00 1.94
734 735 1.466167 CTGTCGCTCCAAATCCAACAG 59.534 52.381 0.00 0.00 0.00 3.16
746 747 3.763671 CAACAGTTGGACAGGGCC 58.236 61.111 5.25 0.00 0.00 5.80
747 748 2.113139 AACAGTTGGACAGGGCCG 59.887 61.111 0.00 0.00 0.00 6.13
828 829 1.550130 CGGTCTAAGCCAGGTGGGAA 61.550 60.000 0.00 0.00 40.01 3.97
874 1972 4.889995 AGGAGCACAATTTTATAGGCTTCC 59.110 41.667 0.00 0.00 0.00 3.46
991 2095 3.404769 TCCATCCTACCATCCCTAGCTTA 59.595 47.826 0.00 0.00 0.00 3.09
1194 2298 3.913799 TCCCAGAGGTGTATTGGAAGAAA 59.086 43.478 0.00 0.00 33.76 2.52
1200 2304 5.073144 AGAGGTGTATTGGAAGAAACAGGAA 59.927 40.000 0.00 0.00 0.00 3.36
1203 2307 4.518970 GTGTATTGGAAGAAACAGGAAGCA 59.481 41.667 0.00 0.00 0.00 3.91
1227 2331 2.358737 AGCAACCAGTACTGCCGC 60.359 61.111 17.86 17.37 39.47 6.53
1272 2376 0.331954 TCACCTCCTCGCTCTACCTT 59.668 55.000 0.00 0.00 0.00 3.50
1284 2388 1.224592 CTACCTTGCCGCCCTCATT 59.775 57.895 0.00 0.00 0.00 2.57
1311 2415 2.280524 TTTGCCTCCACCGTCACG 60.281 61.111 0.00 0.00 0.00 4.35
1320 2424 4.640855 ACCGTCACGCGTGTCCTG 62.641 66.667 35.74 24.38 39.32 3.86
1373 2477 2.125512 CTTTCTCGTGGGAGCGGG 60.126 66.667 0.00 0.00 40.26 6.13
1467 2571 1.369625 CCAATCAGGTACGAGGTTGC 58.630 55.000 4.20 0.00 30.23 4.17
1498 2610 6.349860 CCAATGACTTTTCTGCATGAGATGAA 60.350 38.462 0.00 0.00 0.00 2.57
1501 2613 7.223260 TGACTTTTCTGCATGAGATGAAATT 57.777 32.000 0.00 0.00 0.00 1.82
1508 2620 2.855963 GCATGAGATGAAATTTGTGCGG 59.144 45.455 0.00 0.00 0.00 5.69
1583 2727 4.821260 TGCAAATATATGTCGCCATCAAGT 59.179 37.500 0.00 0.00 32.29 3.16
1698 2843 5.010415 CCAGGAATTTCAAAGAGCTTGACTT 59.990 40.000 0.00 0.00 43.90 3.01
1738 2884 4.680110 CACTCGTTTGTGTCTTACTACCTG 59.320 45.833 0.00 0.00 33.61 4.00
1812 2958 9.856488 ACGTCTTATATTTTGATACGCATAGAT 57.144 29.630 0.00 0.00 32.42 1.98
1858 3064 6.434028 ACATTAACAGTTGCATCAACAGGTAT 59.566 34.615 11.63 0.31 45.66 2.73
1863 4047 4.694982 CAGTTGCATCAACAGGTATGTACA 59.305 41.667 11.63 0.00 45.66 2.90
1940 4126 6.832900 TCATTTGTTTAGGATATGCATGGACA 59.167 34.615 10.16 0.89 0.00 4.02
1942 4128 6.449635 TTGTTTAGGATATGCATGGACAAC 57.550 37.500 10.16 5.53 0.00 3.32
2116 5834 8.325282 CGTTACTATGTGCAGAAATAAATCGAA 58.675 33.333 0.00 0.00 0.00 3.71
2501 6536 3.474570 GAGCGAGGCCACCCAGAT 61.475 66.667 5.01 0.00 0.00 2.90
2612 6650 0.035534 TAGTGCAACATCCATGGCGT 60.036 50.000 6.96 3.53 41.43 5.68
2993 7031 1.964373 CTTGTACGTGGCGGGCTTT 60.964 57.895 0.00 0.00 0.00 3.51
3287 7325 0.954452 GGTTCTGGAGCAGGTTTGTG 59.046 55.000 0.00 0.00 31.51 3.33
3296 9604 1.637553 AGCAGGTTTGTGGGAGATGAT 59.362 47.619 0.00 0.00 0.00 2.45
3370 9719 6.677781 ACAACCACGTTCAATATCCTATTG 57.322 37.500 0.00 1.30 0.00 1.90
3422 9771 8.316497 ACCTCTTCCTATTACCTTTAAGTACC 57.684 38.462 0.00 0.00 0.00 3.34
3606 10018 4.274950 CGCCTAACCTTTCTCAAAACTTCA 59.725 41.667 0.00 0.00 0.00 3.02
3719 10132 8.685427 CAACCATGTTTGTAAAGGATATCATGA 58.315 33.333 4.83 0.00 35.07 3.07
3790 10203 4.003788 CACTTCCCGCGTCACCCT 62.004 66.667 4.92 0.00 0.00 4.34
3945 10362 1.589716 CTTGTAGGGCAGCAGGTTGC 61.590 60.000 0.00 0.00 45.46 4.17
4056 10473 1.785041 CGTGGCTATTTGGGGATGCG 61.785 60.000 0.00 0.00 0.00 4.73
4150 10567 2.092699 GCCCTGGTATTCTTCAAGCTCT 60.093 50.000 0.00 0.00 0.00 4.09
4175 10592 2.277969 CTTCGATCTGCTTCATGCTGT 58.722 47.619 0.00 0.00 43.37 4.40
4176 10593 1.648504 TCGATCTGCTTCATGCTGTG 58.351 50.000 0.00 0.00 43.37 3.66
4188 10605 1.339291 CATGCTGTGCTCCTCGATCTA 59.661 52.381 0.00 0.00 0.00 1.98
4272 10689 2.109774 CTCATCTTCAGCCAGAGAGGT 58.890 52.381 0.00 0.00 40.61 3.85
4313 10730 1.070134 AGCTTTGCTGTCTTGTCGGTA 59.930 47.619 0.00 0.00 37.57 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.095604 AATCCAGTAGGGGAGAGCTC 57.904 55.000 5.27 5.27 41.08 4.09
6 7 2.122768 CAAATCCAGTAGGGGAGAGCT 58.877 52.381 0.00 0.00 41.08 4.09
7 8 2.119495 TCAAATCCAGTAGGGGAGAGC 58.881 52.381 0.00 0.00 41.08 4.09
10 11 4.098501 GCAAAATCAAATCCAGTAGGGGAG 59.901 45.833 0.00 0.00 41.08 4.30
11 12 4.023291 GCAAAATCAAATCCAGTAGGGGA 58.977 43.478 0.00 0.00 42.21 4.81
12 13 4.026052 AGCAAAATCAAATCCAGTAGGGG 58.974 43.478 0.00 0.00 37.22 4.79
13 14 4.142093 CCAGCAAAATCAAATCCAGTAGGG 60.142 45.833 0.00 0.00 34.83 3.53
14 15 4.706476 TCCAGCAAAATCAAATCCAGTAGG 59.294 41.667 0.00 0.00 0.00 3.18
15 16 5.902613 TCCAGCAAAATCAAATCCAGTAG 57.097 39.130 0.00 0.00 0.00 2.57
16 17 5.774690 AGTTCCAGCAAAATCAAATCCAGTA 59.225 36.000 0.00 0.00 0.00 2.74
17 18 4.590222 AGTTCCAGCAAAATCAAATCCAGT 59.410 37.500 0.00 0.00 0.00 4.00
18 19 4.927425 CAGTTCCAGCAAAATCAAATCCAG 59.073 41.667 0.00 0.00 0.00 3.86
19 20 4.262549 CCAGTTCCAGCAAAATCAAATCCA 60.263 41.667 0.00 0.00 0.00 3.41
20 21 4.248058 CCAGTTCCAGCAAAATCAAATCC 58.752 43.478 0.00 0.00 0.00 3.01
21 22 4.687483 CACCAGTTCCAGCAAAATCAAATC 59.313 41.667 0.00 0.00 0.00 2.17
22 23 4.101430 ACACCAGTTCCAGCAAAATCAAAT 59.899 37.500 0.00 0.00 0.00 2.32
23 24 3.450457 ACACCAGTTCCAGCAAAATCAAA 59.550 39.130 0.00 0.00 0.00 2.69
24 25 3.030291 ACACCAGTTCCAGCAAAATCAA 58.970 40.909 0.00 0.00 0.00 2.57
25 26 2.665165 ACACCAGTTCCAGCAAAATCA 58.335 42.857 0.00 0.00 0.00 2.57
26 27 3.733443 AACACCAGTTCCAGCAAAATC 57.267 42.857 0.00 0.00 30.46 2.17
27 28 4.486125 AAAACACCAGTTCCAGCAAAAT 57.514 36.364 0.00 0.00 36.84 1.82
28 29 3.971245 AAAACACCAGTTCCAGCAAAA 57.029 38.095 0.00 0.00 36.84 2.44
29 30 3.971245 AAAAACACCAGTTCCAGCAAA 57.029 38.095 0.00 0.00 36.84 3.68
49 50 7.639113 AAATAATACGAGGATCCAGCAAAAA 57.361 32.000 15.82 0.00 0.00 1.94
50 51 7.201785 GGAAAATAATACGAGGATCCAGCAAAA 60.202 37.037 15.82 0.00 0.00 2.44
51 52 6.262273 GGAAAATAATACGAGGATCCAGCAAA 59.738 38.462 15.82 0.00 0.00 3.68
52 53 5.763204 GGAAAATAATACGAGGATCCAGCAA 59.237 40.000 15.82 0.00 0.00 3.91
53 54 5.071788 AGGAAAATAATACGAGGATCCAGCA 59.928 40.000 15.82 0.00 0.00 4.41
54 55 5.552178 AGGAAAATAATACGAGGATCCAGC 58.448 41.667 15.82 4.41 0.00 4.85
55 56 7.667557 TGTAGGAAAATAATACGAGGATCCAG 58.332 38.462 15.82 10.18 0.00 3.86
56 57 7.606135 TGTAGGAAAATAATACGAGGATCCA 57.394 36.000 15.82 0.00 0.00 3.41
57 58 7.387122 GGTTGTAGGAAAATAATACGAGGATCC 59.613 40.741 2.48 2.48 0.00 3.36
58 59 7.929785 TGGTTGTAGGAAAATAATACGAGGATC 59.070 37.037 0.00 0.00 0.00 3.36
59 60 7.713942 GTGGTTGTAGGAAAATAATACGAGGAT 59.286 37.037 0.00 0.00 0.00 3.24
60 61 7.043565 GTGGTTGTAGGAAAATAATACGAGGA 58.956 38.462 0.00 0.00 0.00 3.71
61 62 7.011109 CAGTGGTTGTAGGAAAATAATACGAGG 59.989 40.741 0.00 0.00 0.00 4.63
62 63 7.011109 CCAGTGGTTGTAGGAAAATAATACGAG 59.989 40.741 0.00 0.00 0.00 4.18
63 64 6.819649 CCAGTGGTTGTAGGAAAATAATACGA 59.180 38.462 0.00 0.00 0.00 3.43
64 65 6.819649 TCCAGTGGTTGTAGGAAAATAATACG 59.180 38.462 9.54 0.00 0.00 3.06
65 66 7.201705 GCTCCAGTGGTTGTAGGAAAATAATAC 60.202 40.741 9.54 0.00 0.00 1.89
66 67 6.826741 GCTCCAGTGGTTGTAGGAAAATAATA 59.173 38.462 9.54 0.00 0.00 0.98
67 68 5.652452 GCTCCAGTGGTTGTAGGAAAATAAT 59.348 40.000 9.54 0.00 0.00 1.28
68 69 5.007682 GCTCCAGTGGTTGTAGGAAAATAA 58.992 41.667 9.54 0.00 0.00 1.40
69 70 4.288626 AGCTCCAGTGGTTGTAGGAAAATA 59.711 41.667 9.54 0.00 0.00 1.40
70 71 3.074538 AGCTCCAGTGGTTGTAGGAAAAT 59.925 43.478 9.54 0.00 0.00 1.82
71 72 2.441750 AGCTCCAGTGGTTGTAGGAAAA 59.558 45.455 9.54 0.00 0.00 2.29
72 73 2.038557 GAGCTCCAGTGGTTGTAGGAAA 59.961 50.000 9.54 0.00 0.00 3.13
73 74 1.623811 GAGCTCCAGTGGTTGTAGGAA 59.376 52.381 9.54 0.00 0.00 3.36
74 75 1.203187 AGAGCTCCAGTGGTTGTAGGA 60.203 52.381 10.93 0.00 0.00 2.94
75 76 1.205893 GAGAGCTCCAGTGGTTGTAGG 59.794 57.143 10.93 0.00 0.00 3.18
76 77 2.175202 AGAGAGCTCCAGTGGTTGTAG 58.825 52.381 10.93 0.00 0.00 2.74
77 78 2.310779 AGAGAGCTCCAGTGGTTGTA 57.689 50.000 10.93 0.00 0.00 2.41
78 79 1.428869 AAGAGAGCTCCAGTGGTTGT 58.571 50.000 10.93 0.00 0.00 3.32
79 80 2.557920 AAAGAGAGCTCCAGTGGTTG 57.442 50.000 10.93 4.82 0.00 3.77
80 81 3.584733 AAAAAGAGAGCTCCAGTGGTT 57.415 42.857 10.93 0.00 0.00 3.67
97 98 8.663911 CCAGCAAAACAAAATTCAGTAGAAAAA 58.336 29.630 0.00 0.00 37.29 1.94
98 99 8.037758 TCCAGCAAAACAAAATTCAGTAGAAAA 58.962 29.630 0.00 0.00 37.29 2.29
99 100 7.551585 TCCAGCAAAACAAAATTCAGTAGAAA 58.448 30.769 0.00 0.00 37.29 2.52
100 101 7.106439 TCCAGCAAAACAAAATTCAGTAGAA 57.894 32.000 0.00 0.00 38.31 2.10
101 102 6.707440 TCCAGCAAAACAAAATTCAGTAGA 57.293 33.333 0.00 0.00 0.00 2.59
102 103 6.980397 AGTTCCAGCAAAACAAAATTCAGTAG 59.020 34.615 0.00 0.00 0.00 2.57
103 104 6.872920 AGTTCCAGCAAAACAAAATTCAGTA 58.127 32.000 0.00 0.00 0.00 2.74
104 105 5.733676 AGTTCCAGCAAAACAAAATTCAGT 58.266 33.333 0.00 0.00 0.00 3.41
105 106 6.980397 ACTAGTTCCAGCAAAACAAAATTCAG 59.020 34.615 0.00 0.00 0.00 3.02
106 107 6.872920 ACTAGTTCCAGCAAAACAAAATTCA 58.127 32.000 0.00 0.00 0.00 2.57
107 108 7.254421 CCAACTAGTTCCAGCAAAACAAAATTC 60.254 37.037 4.77 0.00 0.00 2.17
108 109 6.538381 CCAACTAGTTCCAGCAAAACAAAATT 59.462 34.615 4.77 0.00 0.00 1.82
109 110 6.048509 CCAACTAGTTCCAGCAAAACAAAAT 58.951 36.000 4.77 0.00 0.00 1.82
110 111 5.186021 TCCAACTAGTTCCAGCAAAACAAAA 59.814 36.000 4.77 0.00 0.00 2.44
111 112 4.707448 TCCAACTAGTTCCAGCAAAACAAA 59.293 37.500 4.77 0.00 0.00 2.83
112 113 4.274147 TCCAACTAGTTCCAGCAAAACAA 58.726 39.130 4.77 0.00 0.00 2.83
113 114 3.892284 TCCAACTAGTTCCAGCAAAACA 58.108 40.909 4.77 0.00 0.00 2.83
114 115 4.499188 GGTTCCAACTAGTTCCAGCAAAAC 60.499 45.833 4.77 3.07 0.00 2.43
115 116 3.634910 GGTTCCAACTAGTTCCAGCAAAA 59.365 43.478 4.77 0.00 0.00 2.44
116 117 3.117663 AGGTTCCAACTAGTTCCAGCAAA 60.118 43.478 4.77 0.00 0.00 3.68
117 118 2.441750 AGGTTCCAACTAGTTCCAGCAA 59.558 45.455 4.77 0.00 0.00 3.91
118 119 2.054799 AGGTTCCAACTAGTTCCAGCA 58.945 47.619 4.77 0.00 0.00 4.41
119 120 2.861147 AGGTTCCAACTAGTTCCAGC 57.139 50.000 4.77 2.41 0.00 4.85
120 121 6.600882 TTACTAGGTTCCAACTAGTTCCAG 57.399 41.667 4.77 6.97 46.63 3.86
121 122 6.999705 TTTACTAGGTTCCAACTAGTTCCA 57.000 37.500 4.77 0.00 46.63 3.53
122 123 7.148289 GCAATTTACTAGGTTCCAACTAGTTCC 60.148 40.741 4.77 3.97 46.63 3.62
123 124 7.606839 AGCAATTTACTAGGTTCCAACTAGTTC 59.393 37.037 4.77 0.00 46.63 3.01
124 125 7.390718 CAGCAATTTACTAGGTTCCAACTAGTT 59.609 37.037 6.79 1.12 46.63 2.24
126 127 6.316390 CCAGCAATTTACTAGGTTCCAACTAG 59.684 42.308 0.00 0.00 42.77 2.57
127 128 6.013206 TCCAGCAATTTACTAGGTTCCAACTA 60.013 38.462 0.00 0.00 0.00 2.24
128 129 5.010282 CCAGCAATTTACTAGGTTCCAACT 58.990 41.667 0.00 0.00 0.00 3.16
129 130 5.007682 TCCAGCAATTTACTAGGTTCCAAC 58.992 41.667 0.00 0.00 0.00 3.77
130 131 5.249780 TCCAGCAATTTACTAGGTTCCAA 57.750 39.130 0.00 0.00 0.00 3.53
131 132 4.919774 TCCAGCAATTTACTAGGTTCCA 57.080 40.909 0.00 0.00 0.00 3.53
132 133 4.398358 GGTTCCAGCAATTTACTAGGTTCC 59.602 45.833 0.00 0.00 0.00 3.62
133 134 4.094442 CGGTTCCAGCAATTTACTAGGTTC 59.906 45.833 0.00 0.00 0.00 3.62
134 135 4.007659 CGGTTCCAGCAATTTACTAGGTT 58.992 43.478 0.00 0.00 0.00 3.50
135 136 3.008704 ACGGTTCCAGCAATTTACTAGGT 59.991 43.478 0.00 0.00 0.00 3.08
136 137 3.606687 ACGGTTCCAGCAATTTACTAGG 58.393 45.455 0.00 0.00 0.00 3.02
137 138 4.504858 AGACGGTTCCAGCAATTTACTAG 58.495 43.478 0.00 0.00 0.00 2.57
138 139 4.546829 AGACGGTTCCAGCAATTTACTA 57.453 40.909 0.00 0.00 0.00 1.82
139 140 3.418684 AGACGGTTCCAGCAATTTACT 57.581 42.857 0.00 0.00 0.00 2.24
140 141 4.499037 AAAGACGGTTCCAGCAATTTAC 57.501 40.909 0.00 0.00 0.00 2.01
141 142 6.827586 ATAAAAGACGGTTCCAGCAATTTA 57.172 33.333 0.00 0.00 0.00 1.40
142 143 5.722021 ATAAAAGACGGTTCCAGCAATTT 57.278 34.783 0.00 0.00 0.00 1.82
143 144 5.722021 AATAAAAGACGGTTCCAGCAATT 57.278 34.783 0.00 0.00 0.00 2.32
144 145 5.722021 AAATAAAAGACGGTTCCAGCAAT 57.278 34.783 0.00 0.00 0.00 3.56
145 146 5.523438 AAAATAAAAGACGGTTCCAGCAA 57.477 34.783 0.00 0.00 0.00 3.91
146 147 5.285651 CAAAAATAAAAGACGGTTCCAGCA 58.714 37.500 0.00 0.00 0.00 4.41
147 148 4.149922 GCAAAAATAAAAGACGGTTCCAGC 59.850 41.667 0.00 0.00 0.00 4.85
148 149 5.528870 AGCAAAAATAAAAGACGGTTCCAG 58.471 37.500 0.00 0.00 0.00 3.86
149 150 5.523438 AGCAAAAATAAAAGACGGTTCCA 57.477 34.783 0.00 0.00 0.00 3.53
150 151 6.440436 TGTAGCAAAAATAAAAGACGGTTCC 58.560 36.000 0.00 0.00 0.00 3.62
151 152 7.096353 GGTTGTAGCAAAAATAAAAGACGGTTC 60.096 37.037 0.00 0.00 0.00 3.62
152 153 6.698329 GGTTGTAGCAAAAATAAAAGACGGTT 59.302 34.615 0.00 0.00 0.00 4.44
153 154 6.210796 GGTTGTAGCAAAAATAAAAGACGGT 58.789 36.000 0.00 0.00 0.00 4.83
154 155 5.341196 CGGTTGTAGCAAAAATAAAAGACGG 59.659 40.000 0.00 0.00 0.00 4.79
155 156 5.341196 CCGGTTGTAGCAAAAATAAAAGACG 59.659 40.000 0.00 0.00 0.00 4.18
156 157 5.118050 GCCGGTTGTAGCAAAAATAAAAGAC 59.882 40.000 1.90 0.00 0.00 3.01
157 158 5.224135 GCCGGTTGTAGCAAAAATAAAAGA 58.776 37.500 1.90 0.00 0.00 2.52
158 159 4.387559 GGCCGGTTGTAGCAAAAATAAAAG 59.612 41.667 1.90 0.00 0.00 2.27
159 160 4.202223 TGGCCGGTTGTAGCAAAAATAAAA 60.202 37.500 1.90 0.00 0.00 1.52
160 161 3.321111 TGGCCGGTTGTAGCAAAAATAAA 59.679 39.130 1.90 0.00 0.00 1.40
161 162 2.891580 TGGCCGGTTGTAGCAAAAATAA 59.108 40.909 1.90 0.00 0.00 1.40
162 163 2.515854 TGGCCGGTTGTAGCAAAAATA 58.484 42.857 1.90 0.00 0.00 1.40
163 164 1.333177 TGGCCGGTTGTAGCAAAAAT 58.667 45.000 1.90 0.00 0.00 1.82
164 165 1.112113 TTGGCCGGTTGTAGCAAAAA 58.888 45.000 1.90 0.00 0.00 1.94
165 166 1.112113 TTTGGCCGGTTGTAGCAAAA 58.888 45.000 1.90 0.00 29.43 2.44
166 167 1.333177 ATTTGGCCGGTTGTAGCAAA 58.667 45.000 1.90 0.00 0.00 3.68
167 168 1.333177 AATTTGGCCGGTTGTAGCAA 58.667 45.000 1.90 0.00 0.00 3.91
168 169 1.333177 AAATTTGGCCGGTTGTAGCA 58.667 45.000 1.90 0.00 0.00 3.49
169 170 2.448926 AAAATTTGGCCGGTTGTAGC 57.551 45.000 1.90 0.00 0.00 3.58
170 171 3.924073 GCTAAAAATTTGGCCGGTTGTAG 59.076 43.478 1.90 0.00 38.53 2.74
171 172 3.574826 AGCTAAAAATTTGGCCGGTTGTA 59.425 39.130 1.90 0.00 44.55 2.41
172 173 2.367241 AGCTAAAAATTTGGCCGGTTGT 59.633 40.909 1.90 0.00 44.55 3.32
173 174 3.038788 AGCTAAAAATTTGGCCGGTTG 57.961 42.857 1.90 0.00 44.55 3.77
174 175 3.574826 TGTAGCTAAAAATTTGGCCGGTT 59.425 39.130 1.90 0.00 44.55 4.44
175 176 3.158676 TGTAGCTAAAAATTTGGCCGGT 58.841 40.909 1.90 0.00 44.55 5.28
176 177 3.859411 TGTAGCTAAAAATTTGGCCGG 57.141 42.857 10.15 0.00 44.55 6.13
177 178 4.803613 GGAATGTAGCTAAAAATTTGGCCG 59.196 41.667 10.15 0.00 44.55 6.13
178 179 4.803613 CGGAATGTAGCTAAAAATTTGGCC 59.196 41.667 10.15 0.00 44.55 5.36
179 180 4.803613 CCGGAATGTAGCTAAAAATTTGGC 59.196 41.667 0.00 6.16 43.91 4.52
180 181 4.803613 GCCGGAATGTAGCTAAAAATTTGG 59.196 41.667 5.05 4.42 0.00 3.28
181 182 4.499040 CGCCGGAATGTAGCTAAAAATTTG 59.501 41.667 5.05 0.00 0.00 2.32
182 183 4.396790 TCGCCGGAATGTAGCTAAAAATTT 59.603 37.500 5.05 0.00 0.00 1.82
183 184 3.942748 TCGCCGGAATGTAGCTAAAAATT 59.057 39.130 5.05 0.00 0.00 1.82
184 185 3.311596 GTCGCCGGAATGTAGCTAAAAAT 59.688 43.478 5.05 0.00 0.00 1.82
185 186 2.674357 GTCGCCGGAATGTAGCTAAAAA 59.326 45.455 5.05 0.00 0.00 1.94
186 187 2.273557 GTCGCCGGAATGTAGCTAAAA 58.726 47.619 5.05 0.00 0.00 1.52
187 188 1.799917 CGTCGCCGGAATGTAGCTAAA 60.800 52.381 5.05 0.00 0.00 1.85
188 189 0.248743 CGTCGCCGGAATGTAGCTAA 60.249 55.000 5.05 0.00 0.00 3.09
189 190 1.096967 TCGTCGCCGGAATGTAGCTA 61.097 55.000 5.05 0.00 33.95 3.32
190 191 1.940883 TTCGTCGCCGGAATGTAGCT 61.941 55.000 5.05 0.00 33.95 3.32
191 192 1.480219 CTTCGTCGCCGGAATGTAGC 61.480 60.000 5.05 0.00 33.95 3.58
192 193 0.870307 CCTTCGTCGCCGGAATGTAG 60.870 60.000 5.05 0.59 33.95 2.74
193 194 1.140161 CCTTCGTCGCCGGAATGTA 59.860 57.895 5.05 0.00 33.95 2.29
194 195 2.125673 CCTTCGTCGCCGGAATGT 60.126 61.111 5.05 0.00 33.95 2.71
195 196 2.125673 ACCTTCGTCGCCGGAATG 60.126 61.111 5.05 0.00 33.95 2.67
196 197 2.183555 GACCTTCGTCGCCGGAAT 59.816 61.111 5.05 0.00 33.95 3.01
197 198 4.060038 GGACCTTCGTCGCCGGAA 62.060 66.667 5.05 0.00 40.17 4.30
199 200 4.143333 ATGGACCTTCGTCGCCGG 62.143 66.667 0.00 0.00 40.17 6.13
200 201 2.885644 CATGGACCTTCGTCGCCG 60.886 66.667 0.00 0.00 40.17 6.46
201 202 2.511600 CCATGGACCTTCGTCGCC 60.512 66.667 5.56 0.00 40.17 5.54
202 203 0.953960 AAACCATGGACCTTCGTCGC 60.954 55.000 21.47 0.00 40.17 5.19
203 204 1.196808 CAAAACCATGGACCTTCGTCG 59.803 52.381 21.47 0.00 40.17 5.12
204 205 1.068541 GCAAAACCATGGACCTTCGTC 60.069 52.381 21.47 0.00 38.38 4.20
205 206 0.958822 GCAAAACCATGGACCTTCGT 59.041 50.000 21.47 0.00 0.00 3.85
206 207 0.109781 CGCAAAACCATGGACCTTCG 60.110 55.000 21.47 12.04 0.00 3.79
207 208 0.243636 CCGCAAAACCATGGACCTTC 59.756 55.000 21.47 3.37 0.00 3.46
208 209 1.184970 CCCGCAAAACCATGGACCTT 61.185 55.000 21.47 5.68 0.00 3.50
209 210 1.606313 CCCGCAAAACCATGGACCT 60.606 57.895 21.47 0.00 0.00 3.85
210 211 1.182385 TTCCCGCAAAACCATGGACC 61.182 55.000 21.47 0.25 0.00 4.46
211 212 0.038618 GTTCCCGCAAAACCATGGAC 60.039 55.000 21.47 0.00 0.00 4.02
212 213 1.182385 GGTTCCCGCAAAACCATGGA 61.182 55.000 21.47 0.00 44.61 3.41
213 214 1.291906 GGTTCCCGCAAAACCATGG 59.708 57.895 11.19 11.19 44.61 3.66
214 215 1.080839 CGGTTCCCGCAAAACCATG 60.081 57.895 11.22 0.00 45.35 3.66
215 216 2.272447 CCGGTTCCCGCAAAACCAT 61.272 57.895 11.22 0.00 46.86 3.55
216 217 2.907917 CCGGTTCCCGCAAAACCA 60.908 61.111 11.22 0.00 46.86 3.67
217 218 4.351938 GCCGGTTCCCGCAAAACC 62.352 66.667 1.90 2.55 46.86 3.27
218 219 1.517210 TTAGCCGGTTCCCGCAAAAC 61.517 55.000 1.90 0.00 46.86 2.43
219 220 0.822532 TTTAGCCGGTTCCCGCAAAA 60.823 50.000 1.90 0.00 46.86 2.44
220 221 0.822532 TTTTAGCCGGTTCCCGCAAA 60.823 50.000 1.90 0.00 46.86 3.68
221 222 0.609681 ATTTTAGCCGGTTCCCGCAA 60.610 50.000 1.90 0.00 46.86 4.85
222 223 0.609681 AATTTTAGCCGGTTCCCGCA 60.610 50.000 1.90 0.00 46.86 5.69
223 224 0.528924 AAATTTTAGCCGGTTCCCGC 59.471 50.000 1.90 0.00 46.86 6.13
225 226 2.028476 AGCAAAATTTTAGCCGGTTCCC 60.028 45.455 16.59 0.00 0.00 3.97
226 227 3.313012 AGCAAAATTTTAGCCGGTTCC 57.687 42.857 16.59 0.00 0.00 3.62
227 228 4.303282 TGAAGCAAAATTTTAGCCGGTTC 58.697 39.130 17.41 17.41 0.00 3.62
228 229 4.329462 TGAAGCAAAATTTTAGCCGGTT 57.671 36.364 16.59 0.00 0.00 4.44
229 230 4.055360 GTTGAAGCAAAATTTTAGCCGGT 58.945 39.130 16.59 4.02 0.00 5.28
230 231 4.150451 CAGTTGAAGCAAAATTTTAGCCGG 59.850 41.667 16.59 0.00 0.00 6.13
231 232 4.981674 TCAGTTGAAGCAAAATTTTAGCCG 59.018 37.500 16.59 2.68 0.00 5.52
232 233 5.985530 AGTCAGTTGAAGCAAAATTTTAGCC 59.014 36.000 16.59 5.06 0.00 3.93
233 234 7.468922 AAGTCAGTTGAAGCAAAATTTTAGC 57.531 32.000 2.44 9.72 0.00 3.09
260 261 9.651913 AATCTCAGCAACTAAGAAAAACAAAAA 57.348 25.926 0.00 0.00 0.00 1.94
261 262 9.651913 AAATCTCAGCAACTAAGAAAAACAAAA 57.348 25.926 0.00 0.00 0.00 2.44
262 263 9.651913 AAAATCTCAGCAACTAAGAAAAACAAA 57.348 25.926 0.00 0.00 0.00 2.83
263 264 9.651913 AAAAATCTCAGCAACTAAGAAAAACAA 57.348 25.926 0.00 0.00 0.00 2.83
288 289 4.505922 CGGCACTATTTTTCAGCACAAAAA 59.494 37.500 7.72 7.72 39.09 1.94
289 290 4.047822 CGGCACTATTTTTCAGCACAAAA 58.952 39.130 0.00 0.00 0.00 2.44
290 291 3.637432 CGGCACTATTTTTCAGCACAAA 58.363 40.909 0.00 0.00 0.00 2.83
291 292 2.606795 GCGGCACTATTTTTCAGCACAA 60.607 45.455 0.00 0.00 0.00 3.33
292 293 1.068610 GCGGCACTATTTTTCAGCACA 60.069 47.619 0.00 0.00 0.00 4.57
293 294 1.068610 TGCGGCACTATTTTTCAGCAC 60.069 47.619 0.00 0.00 0.00 4.40
294 295 1.242989 TGCGGCACTATTTTTCAGCA 58.757 45.000 0.00 0.00 0.00 4.41
295 296 2.346099 TTGCGGCACTATTTTTCAGC 57.654 45.000 0.05 0.00 0.00 4.26
296 297 4.030529 CGATTTTGCGGCACTATTTTTCAG 59.969 41.667 0.05 0.00 0.00 3.02
297 298 3.917380 CGATTTTGCGGCACTATTTTTCA 59.083 39.130 0.05 0.00 0.00 2.69
298 299 4.030195 GTCGATTTTGCGGCACTATTTTTC 59.970 41.667 0.05 0.00 35.64 2.29
299 300 3.917985 GTCGATTTTGCGGCACTATTTTT 59.082 39.130 0.05 0.00 35.64 1.94
300 301 3.498082 GTCGATTTTGCGGCACTATTTT 58.502 40.909 0.05 0.00 35.64 1.82
301 302 2.475519 CGTCGATTTTGCGGCACTATTT 60.476 45.455 0.05 0.00 35.20 1.40
302 303 1.062002 CGTCGATTTTGCGGCACTATT 59.938 47.619 0.05 0.00 35.20 1.73
303 304 0.650512 CGTCGATTTTGCGGCACTAT 59.349 50.000 0.05 0.00 35.20 2.12
304 305 0.388778 TCGTCGATTTTGCGGCACTA 60.389 50.000 0.05 0.00 35.20 2.74
305 306 1.019278 ATCGTCGATTTTGCGGCACT 61.019 50.000 0.05 0.00 35.20 4.40
306 307 0.857311 CATCGTCGATTTTGCGGCAC 60.857 55.000 4.63 0.00 35.20 5.01
307 308 1.423450 CATCGTCGATTTTGCGGCA 59.577 52.632 4.63 0.00 35.20 5.69
308 309 1.297598 CCATCGTCGATTTTGCGGC 60.298 57.895 4.63 0.00 0.00 6.53
309 310 1.297598 GCCATCGTCGATTTTGCGG 60.298 57.895 4.63 4.59 0.00 5.69
310 311 1.648165 CGCCATCGTCGATTTTGCG 60.648 57.895 21.58 21.58 0.00 4.85
311 312 1.297598 CCGCCATCGTCGATTTTGC 60.298 57.895 4.63 7.92 0.00 3.68
312 313 0.247655 CACCGCCATCGTCGATTTTG 60.248 55.000 4.63 0.00 0.00 2.44
313 314 0.390603 TCACCGCCATCGTCGATTTT 60.391 50.000 4.63 0.00 0.00 1.82
314 315 0.806102 CTCACCGCCATCGTCGATTT 60.806 55.000 4.63 0.00 0.00 2.17
315 316 1.226974 CTCACCGCCATCGTCGATT 60.227 57.895 4.63 0.00 0.00 3.34
316 317 2.413351 CTCACCGCCATCGTCGAT 59.587 61.111 0.75 0.75 0.00 3.59
317 318 4.492160 GCTCACCGCCATCGTCGA 62.492 66.667 0.00 0.00 0.00 4.20
349 350 3.197790 CAGCCCATCGAAGCACGG 61.198 66.667 8.00 0.00 42.82 4.94
350 351 3.869272 GCAGCCCATCGAAGCACG 61.869 66.667 8.00 0.00 44.09 5.34
351 352 2.437359 AGCAGCCCATCGAAGCAC 60.437 61.111 8.00 0.62 0.00 4.40
352 353 2.437180 CAGCAGCCCATCGAAGCA 60.437 61.111 8.00 0.00 0.00 3.91
353 354 3.207669 CCAGCAGCCCATCGAAGC 61.208 66.667 0.00 0.00 0.00 3.86
354 355 1.078214 TTCCAGCAGCCCATCGAAG 60.078 57.895 0.00 0.00 0.00 3.79
355 356 1.377202 GTTCCAGCAGCCCATCGAA 60.377 57.895 0.00 0.00 0.00 3.71
356 357 2.268920 GTTCCAGCAGCCCATCGA 59.731 61.111 0.00 0.00 0.00 3.59
357 358 2.825836 GGTTCCAGCAGCCCATCG 60.826 66.667 0.00 0.00 0.00 3.84
358 359 2.825836 CGGTTCCAGCAGCCCATC 60.826 66.667 0.00 0.00 0.00 3.51
359 360 4.431131 CCGGTTCCAGCAGCCCAT 62.431 66.667 0.00 0.00 0.00 4.00
363 364 2.985847 AAAGCCGGTTCCAGCAGC 60.986 61.111 1.90 0.00 0.00 5.25
364 365 2.629656 CCAAAGCCGGTTCCAGCAG 61.630 63.158 1.90 0.00 0.00 4.24
365 366 2.597217 CCAAAGCCGGTTCCAGCA 60.597 61.111 1.90 0.00 0.00 4.41
366 367 4.056125 GCCAAAGCCGGTTCCAGC 62.056 66.667 1.90 0.00 0.00 4.85
367 368 2.597217 TGCCAAAGCCGGTTCCAG 60.597 61.111 1.90 0.00 38.69 3.86
368 369 2.597217 CTGCCAAAGCCGGTTCCA 60.597 61.111 1.90 0.00 38.69 3.53
382 383 2.410469 CCTAATGGCGCTTGCTGC 59.590 61.111 7.64 0.00 39.13 5.25
392 393 2.159572 CGTCGTTTCCAAAGCCTAATGG 60.160 50.000 0.00 0.00 38.09 3.16
393 394 2.159572 CCGTCGTTTCCAAAGCCTAATG 60.160 50.000 0.00 0.00 0.00 1.90
394 395 2.081462 CCGTCGTTTCCAAAGCCTAAT 58.919 47.619 0.00 0.00 0.00 1.73
395 396 1.202675 ACCGTCGTTTCCAAAGCCTAA 60.203 47.619 0.00 0.00 0.00 2.69
396 397 0.393820 ACCGTCGTTTCCAAAGCCTA 59.606 50.000 0.00 0.00 0.00 3.93
397 398 1.147600 ACCGTCGTTTCCAAAGCCT 59.852 52.632 0.00 0.00 0.00 4.58
398 399 1.161563 TCACCGTCGTTTCCAAAGCC 61.162 55.000 0.00 0.00 0.00 4.35
399 400 0.234884 CTCACCGTCGTTTCCAAAGC 59.765 55.000 0.00 0.00 0.00 3.51
400 401 1.860676 TCTCACCGTCGTTTCCAAAG 58.139 50.000 0.00 0.00 0.00 2.77
401 402 2.536761 ATCTCACCGTCGTTTCCAAA 57.463 45.000 0.00 0.00 0.00 3.28
402 403 2.139917 CAATCTCACCGTCGTTTCCAA 58.860 47.619 0.00 0.00 0.00 3.53
403 404 1.606994 CCAATCTCACCGTCGTTTCCA 60.607 52.381 0.00 0.00 0.00 3.53
404 405 1.076332 CCAATCTCACCGTCGTTTCC 58.924 55.000 0.00 0.00 0.00 3.13
405 406 2.074547 TCCAATCTCACCGTCGTTTC 57.925 50.000 0.00 0.00 0.00 2.78
406 407 2.036733 TCTTCCAATCTCACCGTCGTTT 59.963 45.455 0.00 0.00 0.00 3.60
407 408 1.616865 TCTTCCAATCTCACCGTCGTT 59.383 47.619 0.00 0.00 0.00 3.85
408 409 1.254026 TCTTCCAATCTCACCGTCGT 58.746 50.000 0.00 0.00 0.00 4.34
409 410 2.099921 AGATCTTCCAATCTCACCGTCG 59.900 50.000 0.00 0.00 29.89 5.12
410 411 3.810310 AGATCTTCCAATCTCACCGTC 57.190 47.619 0.00 0.00 29.89 4.79
411 412 3.261897 ACAAGATCTTCCAATCTCACCGT 59.738 43.478 4.57 0.00 34.90 4.83
412 413 3.620374 CACAAGATCTTCCAATCTCACCG 59.380 47.826 4.57 0.00 34.90 4.94
413 414 4.633565 GTCACAAGATCTTCCAATCTCACC 59.366 45.833 4.57 0.00 34.90 4.02
414 415 4.328440 CGTCACAAGATCTTCCAATCTCAC 59.672 45.833 4.57 0.00 34.90 3.51
415 416 4.220602 TCGTCACAAGATCTTCCAATCTCA 59.779 41.667 4.57 0.00 34.90 3.27
416 417 4.564769 GTCGTCACAAGATCTTCCAATCTC 59.435 45.833 4.57 0.00 34.90 2.75
417 418 4.499183 GTCGTCACAAGATCTTCCAATCT 58.501 43.478 4.57 0.00 37.61 2.40
418 419 3.304559 CGTCGTCACAAGATCTTCCAATC 59.695 47.826 4.57 0.00 0.00 2.67
419 420 3.254060 CGTCGTCACAAGATCTTCCAAT 58.746 45.455 4.57 0.00 0.00 3.16
420 421 2.609491 CCGTCGTCACAAGATCTTCCAA 60.609 50.000 4.57 0.00 0.00 3.53
421 422 1.067846 CCGTCGTCACAAGATCTTCCA 60.068 52.381 4.57 0.00 0.00 3.53
422 423 1.630148 CCGTCGTCACAAGATCTTCC 58.370 55.000 4.57 0.00 0.00 3.46
423 424 1.630148 CCCGTCGTCACAAGATCTTC 58.370 55.000 4.57 0.00 0.00 2.87
424 425 0.246635 CCCCGTCGTCACAAGATCTT 59.753 55.000 0.88 0.88 0.00 2.40
425 426 0.611062 TCCCCGTCGTCACAAGATCT 60.611 55.000 0.00 0.00 0.00 2.75
426 427 0.458025 GTCCCCGTCGTCACAAGATC 60.458 60.000 0.00 0.00 0.00 2.75
427 428 1.590147 GTCCCCGTCGTCACAAGAT 59.410 57.895 0.00 0.00 0.00 2.40
428 429 2.911484 CGTCCCCGTCGTCACAAGA 61.911 63.158 0.00 0.00 0.00 3.02
429 430 2.430244 CGTCCCCGTCGTCACAAG 60.430 66.667 0.00 0.00 0.00 3.16
430 431 3.218470 ACGTCCCCGTCGTCACAA 61.218 61.111 0.00 0.00 46.28 3.33
443 444 4.838486 CTCGCCCAGCTCGACGTC 62.838 72.222 5.18 5.18 32.08 4.34
466 467 4.266070 TCCATCGCCGTAGCTCGC 62.266 66.667 0.00 0.00 38.35 5.03
467 468 2.353607 GTCCATCGCCGTAGCTCG 60.354 66.667 0.00 0.00 36.60 5.03
468 469 2.353607 CGTCCATCGCCGTAGCTC 60.354 66.667 0.00 0.00 36.60 4.09
469 470 3.138798 ACGTCCATCGCCGTAGCT 61.139 61.111 0.00 0.00 44.19 3.32
470 471 2.954868 CACGTCCATCGCCGTAGC 60.955 66.667 0.00 0.00 44.19 3.58
471 472 2.278596 CCACGTCCATCGCCGTAG 60.279 66.667 0.00 0.00 44.19 3.51
472 473 2.751036 TCCACGTCCATCGCCGTA 60.751 61.111 0.00 0.00 44.19 4.02
473 474 4.129737 CTCCACGTCCATCGCCGT 62.130 66.667 0.00 0.00 44.19 5.68
474 475 4.873129 CCTCCACGTCCATCGCCG 62.873 72.222 0.00 0.00 44.19 6.46
475 476 3.458163 TCCTCCACGTCCATCGCC 61.458 66.667 0.00 0.00 44.19 5.54
476 477 2.202756 GTCCTCCACGTCCATCGC 60.203 66.667 0.00 0.00 44.19 4.58
477 478 2.102357 CGTCCTCCACGTCCATCG 59.898 66.667 0.00 0.00 44.07 3.84
505 506 4.873129 CCTCCACGTCCATCGCCG 62.873 72.222 0.00 0.00 44.19 6.46
506 507 3.458163 TCCTCCACGTCCATCGCC 61.458 66.667 0.00 0.00 44.19 5.54
507 508 2.202756 GTCCTCCACGTCCATCGC 60.203 66.667 0.00 0.00 44.19 4.58
508 509 2.102357 CGTCCTCCACGTCCATCG 59.898 66.667 0.00 0.00 44.07 3.84
516 517 2.262915 CTCACCAGCGTCCTCCAC 59.737 66.667 0.00 0.00 0.00 4.02
517 518 3.695606 GCTCACCAGCGTCCTCCA 61.696 66.667 0.00 0.00 35.39 3.86
528 529 4.643387 AACCACCGCCAGCTCACC 62.643 66.667 0.00 0.00 0.00 4.02
529 530 3.050275 GAACCACCGCCAGCTCAC 61.050 66.667 0.00 0.00 0.00 3.51
530 531 4.680237 CGAACCACCGCCAGCTCA 62.680 66.667 0.00 0.00 0.00 4.26
531 532 4.373116 TCGAACCACCGCCAGCTC 62.373 66.667 0.00 0.00 0.00 4.09
532 533 4.379243 CTCGAACCACCGCCAGCT 62.379 66.667 0.00 0.00 0.00 4.24
533 534 4.681978 ACTCGAACCACCGCCAGC 62.682 66.667 0.00 0.00 0.00 4.85
534 535 2.432628 GACTCGAACCACCGCCAG 60.433 66.667 0.00 0.00 0.00 4.85
535 536 2.915659 AGACTCGAACCACCGCCA 60.916 61.111 0.00 0.00 0.00 5.69
536 537 2.432628 CAGACTCGAACCACCGCC 60.433 66.667 0.00 0.00 0.00 6.13
537 538 2.227089 ATCCAGACTCGAACCACCGC 62.227 60.000 0.00 0.00 0.00 5.68
538 539 1.100510 TATCCAGACTCGAACCACCG 58.899 55.000 0.00 0.00 0.00 4.94
539 540 1.202268 CGTATCCAGACTCGAACCACC 60.202 57.143 0.00 0.00 0.00 4.61
540 541 1.202268 CCGTATCCAGACTCGAACCAC 60.202 57.143 0.00 0.00 0.00 4.16
541 542 1.100510 CCGTATCCAGACTCGAACCA 58.899 55.000 0.00 0.00 0.00 3.67
542 543 0.384669 CCCGTATCCAGACTCGAACC 59.615 60.000 0.00 0.00 0.00 3.62
543 544 0.248949 GCCCGTATCCAGACTCGAAC 60.249 60.000 0.00 0.00 0.00 3.95
544 545 1.721664 CGCCCGTATCCAGACTCGAA 61.722 60.000 0.00 0.00 0.00 3.71
545 546 2.184830 CGCCCGTATCCAGACTCGA 61.185 63.158 0.00 0.00 0.00 4.04
546 547 2.331805 CGCCCGTATCCAGACTCG 59.668 66.667 0.00 0.00 0.00 4.18
547 548 1.179814 ATCCGCCCGTATCCAGACTC 61.180 60.000 0.00 0.00 0.00 3.36
548 549 1.152525 ATCCGCCCGTATCCAGACT 60.153 57.895 0.00 0.00 0.00 3.24
549 550 1.179814 AGATCCGCCCGTATCCAGAC 61.180 60.000 0.00 0.00 0.00 3.51
550 551 1.153061 AGATCCGCCCGTATCCAGA 59.847 57.895 0.00 0.00 0.00 3.86
551 552 1.290324 CAGATCCGCCCGTATCCAG 59.710 63.158 0.00 0.00 0.00 3.86
552 553 2.207229 CCAGATCCGCCCGTATCCA 61.207 63.158 0.00 0.00 0.00 3.41
553 554 2.657237 CCAGATCCGCCCGTATCC 59.343 66.667 0.00 0.00 0.00 2.59
554 555 2.048127 GCCAGATCCGCCCGTATC 60.048 66.667 0.00 0.00 0.00 2.24
555 556 3.626924 GGCCAGATCCGCCCGTAT 61.627 66.667 9.82 0.00 40.78 3.06
563 564 1.372087 CTTGAAGCACGGCCAGATCC 61.372 60.000 2.24 0.00 0.00 3.36
564 565 1.986575 GCTTGAAGCACGGCCAGATC 61.987 60.000 13.09 0.00 41.89 2.75
565 566 2.042831 GCTTGAAGCACGGCCAGAT 61.043 57.895 13.09 0.00 41.89 2.90
566 567 2.669569 GCTTGAAGCACGGCCAGA 60.670 61.111 13.09 0.00 41.89 3.86
567 568 3.741476 GGCTTGAAGCACGGCCAG 61.741 66.667 19.89 0.00 44.75 4.85
569 570 2.639327 ATTGGCTTGAAGCACGGCC 61.639 57.895 19.89 2.16 44.75 6.13
570 571 1.444895 CATTGGCTTGAAGCACGGC 60.445 57.895 19.89 1.67 44.75 5.68
571 572 1.213537 CCATTGGCTTGAAGCACGG 59.786 57.895 19.89 9.07 44.75 4.94
572 573 0.387622 CACCATTGGCTTGAAGCACG 60.388 55.000 19.89 3.59 44.75 5.34
573 574 0.675633 ACACCATTGGCTTGAAGCAC 59.324 50.000 19.89 8.98 44.75 4.40
574 575 1.412079 AACACCATTGGCTTGAAGCA 58.588 45.000 19.89 0.00 44.75 3.91
575 576 2.531522 AAACACCATTGGCTTGAAGC 57.468 45.000 9.04 9.04 41.46 3.86
595 596 0.821711 CTCCGTGTCCAGCCCAAAAA 60.822 55.000 0.00 0.00 0.00 1.94
596 597 1.228124 CTCCGTGTCCAGCCCAAAA 60.228 57.895 0.00 0.00 0.00 2.44
597 598 2.429930 CTCCGTGTCCAGCCCAAA 59.570 61.111 0.00 0.00 0.00 3.28
598 599 4.329545 GCTCCGTGTCCAGCCCAA 62.330 66.667 0.00 0.00 0.00 4.12
602 603 4.148825 ATCCGCTCCGTGTCCAGC 62.149 66.667 0.00 0.00 0.00 4.85
603 604 2.105128 GATCCGCTCCGTGTCCAG 59.895 66.667 0.00 0.00 0.00 3.86
604 605 2.362503 AGATCCGCTCCGTGTCCA 60.363 61.111 0.00 0.00 0.00 4.02
605 606 2.105128 CAGATCCGCTCCGTGTCC 59.895 66.667 0.00 0.00 0.00 4.02
606 607 2.105128 CCAGATCCGCTCCGTGTC 59.895 66.667 0.00 0.00 0.00 3.67
607 608 2.227089 GAACCAGATCCGCTCCGTGT 62.227 60.000 0.00 0.00 0.00 4.49
608 609 1.519455 GAACCAGATCCGCTCCGTG 60.519 63.158 0.00 0.00 0.00 4.94
609 610 2.893398 GAACCAGATCCGCTCCGT 59.107 61.111 0.00 0.00 0.00 4.69
610 611 2.278857 CGAACCAGATCCGCTCCG 60.279 66.667 0.00 0.00 0.00 4.63
611 612 1.084370 CAACGAACCAGATCCGCTCC 61.084 60.000 0.00 0.00 0.00 4.70
612 613 1.696832 GCAACGAACCAGATCCGCTC 61.697 60.000 0.00 0.00 0.00 5.03
613 614 1.741770 GCAACGAACCAGATCCGCT 60.742 57.895 0.00 0.00 0.00 5.52
614 615 2.785258 GCAACGAACCAGATCCGC 59.215 61.111 0.00 0.00 0.00 5.54
615 616 2.452813 CCGCAACGAACCAGATCCG 61.453 63.158 0.00 0.00 0.00 4.18
616 617 0.953960 AACCGCAACGAACCAGATCC 60.954 55.000 0.00 0.00 0.00 3.36
617 618 0.165944 CAACCGCAACGAACCAGATC 59.834 55.000 0.00 0.00 0.00 2.75
618 619 1.852067 GCAACCGCAACGAACCAGAT 61.852 55.000 0.00 0.00 38.36 2.90
619 620 2.539338 GCAACCGCAACGAACCAGA 61.539 57.895 0.00 0.00 38.36 3.86
620 621 2.051345 GCAACCGCAACGAACCAG 60.051 61.111 0.00 0.00 38.36 4.00
621 622 3.587933 GGCAACCGCAACGAACCA 61.588 61.111 0.00 0.00 41.24 3.67
633 634 3.279875 GCCATCCGATCGGGCAAC 61.280 66.667 32.79 17.00 46.92 4.17
637 638 4.996434 GGCAGCCATCCGATCGGG 62.996 72.222 32.79 18.59 35.59 5.14
638 639 4.240103 TGGCAGCCATCCGATCGG 62.240 66.667 28.62 28.62 0.00 4.18
639 640 2.664185 CTGGCAGCCATCCGATCG 60.664 66.667 16.64 8.51 30.82 3.69
640 641 2.281345 CCTGGCAGCCATCCGATC 60.281 66.667 16.64 0.00 30.82 3.69
641 642 4.575973 GCCTGGCAGCCATCCGAT 62.576 66.667 16.64 0.00 30.82 4.18
657 658 4.084888 CAACTTTCGGCCGGACGC 62.085 66.667 29.18 0.00 0.00 5.19
658 659 3.419759 CCAACTTTCGGCCGGACG 61.420 66.667 27.95 27.95 0.00 4.79
659 660 3.053896 CCCAACTTTCGGCCGGAC 61.054 66.667 27.83 0.00 0.00 4.79
683 684 3.898627 CTAGTGATAGGCGCCGGCG 62.899 68.421 43.13 43.13 41.24 6.46
684 685 2.049063 CTAGTGATAGGCGCCGGC 60.049 66.667 23.20 19.07 38.90 6.13
685 686 2.049063 GCTAGTGATAGGCGCCGG 60.049 66.667 23.20 0.00 0.00 6.13
686 687 2.049063 GGCTAGTGATAGGCGCCG 60.049 66.667 23.20 4.86 32.94 6.46
687 688 0.179056 TTTGGCTAGTGATAGGCGCC 60.179 55.000 21.89 21.89 44.55 6.53
688 689 1.663695 TTTTGGCTAGTGATAGGCGC 58.336 50.000 0.00 0.00 44.55 6.53
705 706 5.278315 GGATTTGGAGCGACAGTTACTTTTT 60.278 40.000 0.00 0.00 0.00 1.94
706 707 4.215613 GGATTTGGAGCGACAGTTACTTTT 59.784 41.667 0.00 0.00 0.00 2.27
707 708 3.751698 GGATTTGGAGCGACAGTTACTTT 59.248 43.478 0.00 0.00 0.00 2.66
708 709 3.244422 TGGATTTGGAGCGACAGTTACTT 60.244 43.478 0.00 0.00 0.00 2.24
734 735 3.699134 GATCCCGGCCCTGTCCAAC 62.699 68.421 0.00 0.00 0.00 3.77
744 745 2.203351 GGATTGGTGGATCCCGGC 60.203 66.667 9.90 0.00 39.79 6.13
812 813 1.760613 CGTATTCCCACCTGGCTTAGA 59.239 52.381 0.00 0.00 0.00 2.10
828 829 0.396811 GAATGGGCTGGGCTACGTAT 59.603 55.000 0.00 0.00 0.00 3.06
874 1972 6.369340 CAGCTCAATCTGCTTATATCAAGGAG 59.631 42.308 0.00 0.00 38.92 3.69
991 2095 2.124151 GCCGGCCATGGTTGATCT 60.124 61.111 18.11 0.00 0.00 2.75
1015 2119 2.358247 ACCGGCCGTGTTCATCAC 60.358 61.111 26.12 0.00 43.03 3.06
1194 2298 0.179009 TGCTCTTGCTTGCTTCCTGT 60.179 50.000 0.00 0.00 40.48 4.00
1200 2304 0.466922 ACTGGTTGCTCTTGCTTGCT 60.467 50.000 0.00 0.00 40.48 3.91
1203 2307 2.498167 CAGTACTGGTTGCTCTTGCTT 58.502 47.619 15.49 0.00 40.48 3.91
1227 2331 1.067846 TGTAGCAGCTGGTTGTCGTAG 60.068 52.381 25.47 0.00 0.00 3.51
1272 2376 4.802051 GAGGCAATGAGGGCGGCA 62.802 66.667 12.47 0.00 38.57 5.69
1284 2388 1.380302 GGAGGCAAAGAAGGAGGCA 59.620 57.895 0.00 0.00 0.00 4.75
1467 2571 3.817084 TGCAGAAAAGTCATTGGAGTGAG 59.183 43.478 0.00 0.00 0.00 3.51
1501 2613 8.261522 TATATAGATATATTTGCACCCGCACAA 58.738 33.333 0.00 0.00 37.68 3.33
1521 2665 7.716612 TGTGACCTTCATGGCGATATATATAG 58.283 38.462 0.00 0.00 40.22 1.31
1537 2681 3.126001 TGGAACTGTGATGTGACCTTC 57.874 47.619 0.00 0.00 0.00 3.46
1583 2727 3.000041 GCATACGGAACTGTGATGTGAA 59.000 45.455 0.00 0.00 0.00 3.18
1698 2843 2.607635 GAGTGACGCAGAACAACAAAGA 59.392 45.455 0.00 0.00 0.00 2.52
1774 2920 8.901748 CAAAATATAAGACGTTTTTGGACACTG 58.098 33.333 11.33 0.00 36.11 3.66
1858 3064 5.560722 TTCTCTTCCCATTTCTGTGTACA 57.439 39.130 0.00 0.00 0.00 2.90
1863 4047 5.013495 TGTCTCATTCTCTTCCCATTTCTGT 59.987 40.000 0.00 0.00 0.00 3.41
1940 4126 7.808279 TTCAATCTATATATCTTCCCCGGTT 57.192 36.000 0.00 0.00 0.00 4.44
1942 4128 7.553044 GGTTTTCAATCTATATATCTTCCCCGG 59.447 40.741 0.00 0.00 0.00 5.73
2116 5834 6.282930 ACTTTCATACTTGCTTGCACAATTT 58.717 32.000 0.00 0.00 0.00 1.82
2158 5883 8.916062 TGCACATAATATTGGATGATTTTGACT 58.084 29.630 5.41 0.00 0.00 3.41
2612 6650 3.304123 GGTACTTGCGCAACACAATGTTA 60.304 43.478 21.02 0.00 38.77 2.41
2993 7031 4.555709 GCACCCCACGACCACACA 62.556 66.667 0.00 0.00 0.00 3.72
3251 7289 0.399949 ACCAGTGTCCCTTCCAGACA 60.400 55.000 0.00 0.00 41.84 3.41
3287 7325 1.414181 ACGTGGATGTCATCATCTCCC 59.586 52.381 14.72 0.00 46.74 4.30
3296 9604 1.608025 GGCTCTTGAACGTGGATGTCA 60.608 52.381 0.00 0.00 0.00 3.58
3370 9719 3.549794 AGGGAACTATTGAAGATGCTGC 58.450 45.455 0.00 0.00 40.61 5.25
3422 9771 4.911390 ACTTTATTGACAGACCCCTGAAG 58.089 43.478 0.00 0.00 43.02 3.02
3606 10018 4.069304 TGCTAACACGCCTTAGATGTTTT 58.931 39.130 4.30 0.00 37.68 2.43
3685 10098 6.071391 CCTTTACAAACATGGTTGGCTAATCT 60.071 38.462 26.56 7.06 32.50 2.40
3719 10132 5.957842 TTGGTTATGATGCGTTCTTCTTT 57.042 34.783 0.00 0.00 0.00 2.52
3774 10187 4.003788 CAGGGTGACGCGGGAAGT 62.004 66.667 12.47 0.00 0.00 3.01
3920 10333 1.153549 GCTGCCCTACAAGACGGAG 60.154 63.158 0.00 0.00 0.00 4.63
3924 10337 0.036875 AACCTGCTGCCCTACAAGAC 59.963 55.000 0.00 0.00 0.00 3.01
3927 10340 1.603455 GCAACCTGCTGCCCTACAA 60.603 57.895 0.00 0.00 40.96 2.41
4043 10460 1.147376 CCCGACGCATCCCCAAATA 59.853 57.895 0.00 0.00 0.00 1.40
4056 10473 3.391382 CTGACACCCTCCCCCGAC 61.391 72.222 0.00 0.00 0.00 4.79
4067 10484 3.349006 CAGTGCCACGCCTGACAC 61.349 66.667 0.00 0.00 31.74 3.67
4135 10552 9.685828 ATCGAAGTTATAGAGCTTGAAGAATAC 57.314 33.333 0.00 0.00 0.00 1.89
4175 10592 3.712016 AGCTATCTAGATCGAGGAGCA 57.288 47.619 21.06 0.00 31.73 4.26
4176 10593 5.160641 CAAAAGCTATCTAGATCGAGGAGC 58.839 45.833 8.95 12.15 0.00 4.70
4188 10605 1.202336 GCAATGCGCCAAAAGCTATCT 60.202 47.619 4.18 0.00 40.39 1.98
4272 10689 1.302383 CGCGCCACACCCTCATAAAA 61.302 55.000 0.00 0.00 0.00 1.52
4298 10715 0.973632 ATGGTACCGACAAGACAGCA 59.026 50.000 7.57 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.