Multiple sequence alignment - TraesCS3D01G469400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G469400 chr3D 100.000 2495 0 0 1 2495 571513195 571515689 0.000000e+00 4608.0
1 TraesCS3D01G469400 chr3D 90.572 2132 164 17 173 2286 571117329 571119441 0.000000e+00 2789.0
2 TraesCS3D01G469400 chr3D 89.271 1715 159 14 1 1706 571677260 571678958 0.000000e+00 2124.0
3 TraesCS3D01G469400 chr3D 82.041 1264 175 26 374 1632 571208046 571209262 0.000000e+00 1029.0
4 TraesCS3D01G469400 chr3D 85.383 561 44 17 1736 2286 571678956 571679488 4.690000e-152 547.0
5 TraesCS3D01G469400 chr3D 88.010 417 35 8 1879 2286 571492794 571493204 1.740000e-131 479.0
6 TraesCS3D01G469400 chr3D 83.206 131 14 8 2057 2179 571126772 571126902 2.030000e-21 113.0
7 TraesCS3D01G469400 chr3A 88.335 2306 225 21 3 2286 703938797 703941080 0.000000e+00 2728.0
8 TraesCS3D01G469400 chr3B 88.487 2128 217 12 178 2288 758435310 758437426 0.000000e+00 2547.0
9 TraesCS3D01G469400 chr3B 92.053 151 11 1 2287 2436 758165945 758166095 6.990000e-51 211.0
10 TraesCS3D01G469400 chr3B 88.350 103 11 1 760 861 758163059 758163161 3.370000e-24 122.0
11 TraesCS3D01G469400 chr3B 89.831 59 6 0 1298 1356 778490122 778490064 2.660000e-10 76.8
12 TraesCS3D01G469400 chrUn 88.137 1846 167 23 457 2286 352871305 352873114 0.000000e+00 2148.0
13 TraesCS3D01G469400 chrUn 88.848 1372 120 15 457 1822 409139747 409141091 0.000000e+00 1655.0
14 TraesCS3D01G469400 chrUn 90.076 1179 107 4 493 1669 427478523 427479693 0.000000e+00 1520.0
15 TraesCS3D01G469400 chrUn 87.521 585 51 11 1715 2286 349530659 349530084 0.000000e+00 656.0
16 TraesCS3D01G469400 chrUn 86.538 416 37 11 1881 2286 357850997 357851403 8.190000e-120 440.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G469400 chr3D 571513195 571515689 2494 False 4608.0 4608 100.000 1 2495 1 chr3D.!!$F5 2494
1 TraesCS3D01G469400 chr3D 571117329 571119441 2112 False 2789.0 2789 90.572 173 2286 1 chr3D.!!$F1 2113
2 TraesCS3D01G469400 chr3D 571677260 571679488 2228 False 1335.5 2124 87.327 1 2286 2 chr3D.!!$F6 2285
3 TraesCS3D01G469400 chr3D 571208046 571209262 1216 False 1029.0 1029 82.041 374 1632 1 chr3D.!!$F3 1258
4 TraesCS3D01G469400 chr3A 703938797 703941080 2283 False 2728.0 2728 88.335 3 2286 1 chr3A.!!$F1 2283
5 TraesCS3D01G469400 chr3B 758435310 758437426 2116 False 2547.0 2547 88.487 178 2288 1 chr3B.!!$F1 2110
6 TraesCS3D01G469400 chrUn 352871305 352873114 1809 False 2148.0 2148 88.137 457 2286 1 chrUn.!!$F1 1829
7 TraesCS3D01G469400 chrUn 409139747 409141091 1344 False 1655.0 1655 88.848 457 1822 1 chrUn.!!$F3 1365
8 TraesCS3D01G469400 chrUn 427478523 427479693 1170 False 1520.0 1520 90.076 493 1669 1 chrUn.!!$F4 1176
9 TraesCS3D01G469400 chrUn 349530084 349530659 575 True 656.0 656 87.521 1715 2286 1 chrUn.!!$R1 571

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
726 737 0.106719 ATGAATAGCCCCAACCACCG 60.107 55.0 0.0 0.0 0.0 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2432 2472 0.106769 TCAACTGGGCTGCAGTTTGA 60.107 50.0 16.64 12.92 40.51 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.766828 GGAGAGGAATCGGGAAAGAAGA 59.233 50.000 0.00 0.00 0.00 2.87
36 37 4.130857 GGAATCGGGAAAGAAGAGGAATC 58.869 47.826 0.00 0.00 0.00 2.52
54 55 1.141881 CGGGAGAGAATGTGGGACG 59.858 63.158 0.00 0.00 0.00 4.79
59 60 1.275291 GAGAGAATGTGGGACGGTTCA 59.725 52.381 0.00 0.00 0.00 3.18
74 75 3.621715 ACGGTTCAGTCAAACAAGAGTTC 59.378 43.478 0.00 0.00 36.84 3.01
84 85 8.616076 CAGTCAAACAAGAGTTCTCTATGTTTT 58.384 33.333 23.45 15.33 39.52 2.43
86 87 9.439537 GTCAAACAAGAGTTCTCTATGTTTTTC 57.560 33.333 23.45 18.84 39.52 2.29
90 91 9.832445 AACAAGAGTTCTCTATGTTTTTCTACA 57.168 29.630 16.58 0.00 33.16 2.74
91 92 9.482627 ACAAGAGTTCTCTATGTTTTTCTACAG 57.517 33.333 2.63 0.00 0.00 2.74
128 129 7.829211 CAGAGGTAAATAGGATTTTCCAAGTCA 59.171 37.037 9.42 0.00 39.61 3.41
145 146 3.580794 GTCACACTTGACGGTGTTAAC 57.419 47.619 0.00 0.00 46.71 2.01
148 149 2.286833 CACACTTGACGGTGTTAACAGG 59.713 50.000 8.98 6.79 46.71 4.00
154 155 4.886247 TGACGGTGTTAACAGGAAAAAG 57.114 40.909 8.98 0.00 0.00 2.27
160 162 6.086222 CGGTGTTAACAGGAAAAAGATGATG 58.914 40.000 8.98 0.00 0.00 3.07
161 163 6.389906 GGTGTTAACAGGAAAAAGATGATGG 58.610 40.000 8.98 0.00 0.00 3.51
168 170 5.474876 ACAGGAAAAAGATGATGGAAGTGTC 59.525 40.000 0.00 0.00 0.00 3.67
169 171 5.474532 CAGGAAAAAGATGATGGAAGTGTCA 59.525 40.000 0.00 0.00 0.00 3.58
170 172 6.152323 CAGGAAAAAGATGATGGAAGTGTCAT 59.848 38.462 0.00 0.00 37.76 3.06
171 173 6.152323 AGGAAAAAGATGATGGAAGTGTCATG 59.848 38.462 0.00 0.00 35.33 3.07
174 176 4.166246 AGATGATGGAAGTGTCATGCAT 57.834 40.909 0.00 0.00 35.33 3.96
184 186 1.747355 GTGTCATGCATGGAAGGAAGG 59.253 52.381 25.97 0.00 0.00 3.46
192 194 4.158786 TGCATGGAAGGAAGGAAATGAAA 58.841 39.130 0.00 0.00 0.00 2.69
199 201 5.245977 GGAAGGAAGGAAATGAAATTGTGGA 59.754 40.000 0.00 0.00 36.10 4.02
202 204 5.478332 AGGAAGGAAATGAAATTGTGGAGTC 59.522 40.000 0.00 0.00 36.10 3.36
236 238 6.966534 ATGTGATAATCTTAGGGCCAAAAG 57.033 37.500 6.18 9.43 0.00 2.27
239 241 2.550277 AATCTTAGGGCCAAAAGGGG 57.450 50.000 6.18 0.00 37.04 4.79
261 263 7.283354 AGGGGAATTAGATTTTAAGAAAGAGCG 59.717 37.037 0.00 0.00 0.00 5.03
281 283 6.016276 AGAGCGAGATAAGGAATTCTCTCTTC 60.016 42.308 16.20 13.71 34.94 2.87
282 284 5.596361 AGCGAGATAAGGAATTCTCTCTTCA 59.404 40.000 16.20 0.50 36.94 3.02
339 341 5.299531 CAGCAGATCCAATGAGTGAAATGAT 59.700 40.000 0.00 0.00 0.00 2.45
344 346 7.282450 CAGATCCAATGAGTGAAATGATGAAGA 59.718 37.037 0.00 0.00 0.00 2.87
370 372 2.339418 ACGCACCGACGAAAATTATCA 58.661 42.857 0.00 0.00 36.70 2.15
399 401 2.935481 CACCCTGGCCTCCTCCAA 60.935 66.667 3.32 0.00 35.36 3.53
409 417 1.658686 CCTCCTCCAACTCCTCGTCG 61.659 65.000 0.00 0.00 0.00 5.12
461 469 1.063567 ACTTCCTACCCGAGCTCATCT 60.064 52.381 15.40 0.00 0.00 2.90
540 548 4.709690 GGATCTCCTCCCTCCGTT 57.290 61.111 0.00 0.00 38.19 4.44
574 582 3.815407 CTGCCAAGCCCCACACCTT 62.815 63.158 0.00 0.00 0.00 3.50
583 591 1.358152 CCCCACACCTTCTCCTTGTA 58.642 55.000 0.00 0.00 0.00 2.41
586 594 1.337823 CCACACCTTCTCCTTGTACCG 60.338 57.143 0.00 0.00 0.00 4.02
594 602 1.569548 TCTCCTTGTACCGGGATCTCT 59.430 52.381 6.32 0.00 0.00 3.10
610 618 1.644337 TCTCTAGCCCTGTTCCACCTA 59.356 52.381 0.00 0.00 0.00 3.08
664 672 0.753111 GCCCCATCCCTGATGTTGAC 60.753 60.000 3.62 0.00 38.28 3.18
669 677 2.105477 CCATCCCTGATGTTGACCCTAG 59.895 54.545 3.62 0.00 38.28 3.02
696 707 2.093658 CCGCCTTCTACTCTTTTGGCTA 60.094 50.000 0.00 0.00 38.33 3.93
710 721 1.374631 GGCTATCGCATCGCCATGA 60.375 57.895 0.00 0.00 43.25 3.07
711 722 0.950555 GGCTATCGCATCGCCATGAA 60.951 55.000 0.00 0.00 43.25 2.57
712 723 1.081892 GCTATCGCATCGCCATGAAT 58.918 50.000 0.00 0.00 35.78 2.57
720 731 0.478072 ATCGCCATGAATAGCCCCAA 59.522 50.000 0.00 0.00 0.00 4.12
726 737 0.106719 ATGAATAGCCCCAACCACCG 60.107 55.000 0.00 0.00 0.00 4.94
735 746 1.961277 CCAACCACCGTGAGCTCAC 60.961 63.158 32.73 32.73 43.15 3.51
757 768 1.606601 CGTCCACCTCCTCACAGGA 60.607 63.158 0.00 0.00 43.43 3.86
758 769 1.185618 CGTCCACCTCCTCACAGGAA 61.186 60.000 0.00 0.00 45.28 3.36
775 787 0.173481 GAAAGCGATTTTGCCTCCCC 59.827 55.000 0.00 0.00 34.65 4.81
823 835 2.482333 CCTCTCCGGCGATCTCGTT 61.482 63.158 9.30 0.00 42.22 3.85
861 874 4.157120 GGCCGTGCCGTCCAGTAT 62.157 66.667 0.00 0.00 39.62 2.12
870 883 1.883084 CGTCCAGTATTGCCGCCTC 60.883 63.158 0.00 0.00 0.00 4.70
882 895 2.267642 CGCCTCGGGGATGTTGAA 59.732 61.111 4.80 0.00 33.58 2.69
887 900 1.077068 TCGGGGATGTTGAATGGCC 60.077 57.895 0.00 0.00 0.00 5.36
915 928 1.346395 TCATGCACTGAACCCTACGTT 59.654 47.619 0.00 0.00 37.41 3.99
977 990 2.573009 TGGTCAGATCTGAAGATGCCAA 59.427 45.455 26.70 11.04 41.85 4.52
1000 1013 0.742505 CCTATGTTACCGTCTCGCCA 59.257 55.000 0.00 0.00 0.00 5.69
1468 1483 2.496899 TTCTGATTTCAGGCCACCTC 57.503 50.000 5.01 0.00 43.91 3.85
1502 1517 3.301352 GCATGTGTTGATGCACTCG 57.699 52.632 0.00 0.00 46.77 4.18
1513 1528 2.054363 GATGCACTCGTATGGATCACG 58.946 52.381 14.78 0.00 44.44 4.35
1516 1531 1.202371 GCACTCGTATGGATCACGGAA 60.202 52.381 4.47 0.00 39.82 4.30
1582 1598 6.708949 GTGACTTGTAGTCCTTGTTTGGATTA 59.291 38.462 4.52 0.00 44.44 1.75
1603 1619 8.421002 GGATTAGCCATGTTATTTTGGTGTATT 58.579 33.333 0.00 0.00 35.34 1.89
1649 1666 4.297299 AGCAGCATGTGTTACATATTGC 57.703 40.909 15.92 15.92 42.49 3.56
1709 1727 5.126067 GCTAAGCTGATCCCTGAAATGTTA 58.874 41.667 0.00 0.00 0.00 2.41
1712 1730 3.941483 AGCTGATCCCTGAAATGTTAACG 59.059 43.478 0.26 0.00 0.00 3.18
1747 1765 4.774660 AGTCTCGGGAATCAGTACTAGA 57.225 45.455 0.00 0.00 0.00 2.43
1749 1767 5.310451 AGTCTCGGGAATCAGTACTAGATC 58.690 45.833 0.00 0.00 0.00 2.75
1750 1768 5.064558 GTCTCGGGAATCAGTACTAGATCA 58.935 45.833 0.00 0.00 0.00 2.92
1751 1769 5.708230 GTCTCGGGAATCAGTACTAGATCAT 59.292 44.000 0.00 0.00 0.00 2.45
1752 1770 6.879993 GTCTCGGGAATCAGTACTAGATCATA 59.120 42.308 0.00 0.00 0.00 2.15
1753 1771 7.554835 GTCTCGGGAATCAGTACTAGATCATAT 59.445 40.741 0.00 0.00 0.00 1.78
1762 1783 8.942338 TCAGTACTAGATCATATTTTTGCGTT 57.058 30.769 0.00 0.00 0.00 4.84
1822 1843 3.342668 ATGTATGCCCGCACCAGCA 62.343 57.895 0.00 0.00 44.45 4.41
1848 1869 6.090763 CGCAAGTCAGTGTATTCAAATCACTA 59.909 38.462 0.00 0.00 39.89 2.74
1942 1963 7.502226 TGGTATGAGAATTGTATGTTTCATCCC 59.498 37.037 0.00 0.00 0.00 3.85
1965 1986 8.281531 TCCCCAATTAATATGGCATCTTATAGG 58.718 37.037 1.65 7.28 36.58 2.57
1977 1998 6.543465 TGGCATCTTATAGGAAGTCATTTGTG 59.457 38.462 0.00 0.00 0.00 3.33
1996 2026 1.211703 TGAGTGACCCAGAAGCACAAA 59.788 47.619 0.00 0.00 35.08 2.83
2008 2038 3.290098 GCACAAAACGATGCTACGG 57.710 52.632 7.82 0.00 38.84 4.02
2019 2049 0.691078 ATGCTACGGACCACCAGGAT 60.691 55.000 0.00 0.00 38.69 3.24
2166 2197 1.342975 TGAGCAGAGTACCATGGCCTA 60.343 52.381 13.04 0.00 0.00 3.93
2168 2199 2.370189 GAGCAGAGTACCATGGCCTATT 59.630 50.000 13.04 0.00 0.00 1.73
2199 2230 1.672682 TAATGTCCGCGGCTTTGCA 60.673 52.632 23.51 14.03 34.15 4.08
2208 2239 1.136557 CGCGGCTTTGCAAATCTTTTG 60.137 47.619 13.23 0.59 34.15 2.44
2215 2255 4.553351 GCTTTGCAAATCTTTTGGACAAGC 60.553 41.667 13.23 16.72 32.28 4.01
2216 2256 3.110447 TGCAAATCTTTTGGACAAGCC 57.890 42.857 2.50 0.00 37.10 4.35
2217 2257 2.699846 TGCAAATCTTTTGGACAAGCCT 59.300 40.909 2.50 0.00 37.63 4.58
2218 2258 3.062042 GCAAATCTTTTGGACAAGCCTG 58.938 45.455 2.50 0.00 37.63 4.85
2219 2259 3.493176 GCAAATCTTTTGGACAAGCCTGT 60.493 43.478 0.00 0.00 38.98 4.00
2220 2260 4.261994 GCAAATCTTTTGGACAAGCCTGTA 60.262 41.667 2.50 0.00 35.30 2.74
2221 2261 5.738783 GCAAATCTTTTGGACAAGCCTGTAA 60.739 40.000 2.50 0.00 35.30 2.41
2222 2262 5.712152 AATCTTTTGGACAAGCCTGTAAG 57.288 39.130 0.00 0.00 35.30 2.34
2223 2263 4.431416 TCTTTTGGACAAGCCTGTAAGA 57.569 40.909 0.00 0.00 35.30 2.10
2230 2270 5.185454 TGGACAAGCCTGTAAGACATAATG 58.815 41.667 0.00 0.00 35.30 1.90
2234 2274 4.760530 AGCCTGTAAGACATAATGCTGA 57.239 40.909 0.00 0.00 34.07 4.26
2239 2279 6.057533 CCTGTAAGACATAATGCTGATTCCA 58.942 40.000 0.00 0.00 34.07 3.53
2256 2296 7.437713 TGATTCCAGGATGATTTGTAGTACT 57.562 36.000 0.00 0.00 39.69 2.73
2288 2328 4.810191 ATCGTTCCAGCTTAGAGAACTT 57.190 40.909 11.69 0.81 38.17 2.66
2289 2329 4.175787 TCGTTCCAGCTTAGAGAACTTC 57.824 45.455 11.69 0.00 38.17 3.01
2290 2330 3.827302 TCGTTCCAGCTTAGAGAACTTCT 59.173 43.478 11.69 0.00 38.17 2.85
2291 2331 4.281182 TCGTTCCAGCTTAGAGAACTTCTT 59.719 41.667 11.69 0.00 38.17 2.52
2292 2332 4.623595 CGTTCCAGCTTAGAGAACTTCTTC 59.376 45.833 11.69 0.00 38.17 2.87
2293 2333 5.542779 GTTCCAGCTTAGAGAACTTCTTCA 58.457 41.667 7.94 0.00 37.50 3.02
2294 2334 5.398603 TCCAGCTTAGAGAACTTCTTCAG 57.601 43.478 0.00 0.00 37.36 3.02
2295 2335 4.835615 TCCAGCTTAGAGAACTTCTTCAGT 59.164 41.667 0.00 0.00 37.36 3.41
2296 2336 6.010850 TCCAGCTTAGAGAACTTCTTCAGTA 58.989 40.000 0.00 0.00 37.36 2.74
2297 2337 6.151985 TCCAGCTTAGAGAACTTCTTCAGTAG 59.848 42.308 0.00 0.00 37.36 2.57
2298 2338 6.329496 CAGCTTAGAGAACTTCTTCAGTAGG 58.671 44.000 0.00 0.00 37.36 3.18
2299 2339 6.014012 AGCTTAGAGAACTTCTTCAGTAGGT 58.986 40.000 0.00 0.00 37.36 3.08
2300 2340 6.071616 AGCTTAGAGAACTTCTTCAGTAGGTG 60.072 42.308 0.00 0.00 37.36 4.00
2301 2341 6.071840 GCTTAGAGAACTTCTTCAGTAGGTGA 60.072 42.308 0.00 0.00 37.36 4.02
2302 2342 5.975693 AGAGAACTTCTTCAGTAGGTGAG 57.024 43.478 0.00 0.00 36.21 3.51
2303 2343 5.636123 AGAGAACTTCTTCAGTAGGTGAGA 58.364 41.667 0.00 0.00 36.21 3.27
2304 2344 5.710099 AGAGAACTTCTTCAGTAGGTGAGAG 59.290 44.000 0.00 0.00 36.21 3.20
2305 2345 5.636123 AGAACTTCTTCAGTAGGTGAGAGA 58.364 41.667 0.00 0.00 36.21 3.10
2306 2346 6.252995 AGAACTTCTTCAGTAGGTGAGAGAT 58.747 40.000 0.00 0.00 36.21 2.75
2307 2347 5.913137 ACTTCTTCAGTAGGTGAGAGATG 57.087 43.478 0.00 0.00 36.21 2.90
2308 2348 4.159506 ACTTCTTCAGTAGGTGAGAGATGC 59.840 45.833 0.00 0.00 36.21 3.91
2309 2349 3.974719 TCTTCAGTAGGTGAGAGATGCT 58.025 45.455 0.00 0.00 36.21 3.79
2310 2350 4.348486 TCTTCAGTAGGTGAGAGATGCTT 58.652 43.478 0.00 0.00 36.21 3.91
2311 2351 4.400884 TCTTCAGTAGGTGAGAGATGCTTC 59.599 45.833 0.00 0.00 36.21 3.86
2312 2352 3.027412 TCAGTAGGTGAGAGATGCTTCC 58.973 50.000 0.00 0.00 0.00 3.46
2313 2353 3.030291 CAGTAGGTGAGAGATGCTTCCT 58.970 50.000 0.00 0.00 36.04 3.36
2314 2354 3.450457 CAGTAGGTGAGAGATGCTTCCTT 59.550 47.826 0.00 0.00 34.59 3.36
2315 2355 3.450457 AGTAGGTGAGAGATGCTTCCTTG 59.550 47.826 0.00 0.00 34.59 3.61
2316 2356 2.264455 AGGTGAGAGATGCTTCCTTGT 58.736 47.619 0.00 0.00 30.59 3.16
2317 2357 2.641815 AGGTGAGAGATGCTTCCTTGTT 59.358 45.455 0.00 0.00 30.59 2.83
2318 2358 3.073650 AGGTGAGAGATGCTTCCTTGTTT 59.926 43.478 0.00 0.00 30.59 2.83
2319 2359 3.823304 GGTGAGAGATGCTTCCTTGTTTT 59.177 43.478 0.00 0.00 0.00 2.43
2320 2360 5.003804 GGTGAGAGATGCTTCCTTGTTTTA 58.996 41.667 0.00 0.00 0.00 1.52
2321 2361 5.123027 GGTGAGAGATGCTTCCTTGTTTTAG 59.877 44.000 0.00 0.00 0.00 1.85
2322 2362 5.123027 GTGAGAGATGCTTCCTTGTTTTAGG 59.877 44.000 0.00 0.00 36.59 2.69
2323 2363 4.593956 AGAGATGCTTCCTTGTTTTAGGG 58.406 43.478 0.00 0.00 35.90 3.53
2324 2364 4.043435 AGAGATGCTTCCTTGTTTTAGGGT 59.957 41.667 0.00 0.00 35.90 4.34
2325 2365 4.082125 AGATGCTTCCTTGTTTTAGGGTG 58.918 43.478 0.00 0.00 35.90 4.61
2326 2366 3.586470 TGCTTCCTTGTTTTAGGGTGA 57.414 42.857 0.00 0.00 35.90 4.02
2327 2367 3.486383 TGCTTCCTTGTTTTAGGGTGAG 58.514 45.455 0.00 0.00 35.90 3.51
2328 2368 3.137544 TGCTTCCTTGTTTTAGGGTGAGA 59.862 43.478 0.00 0.00 35.90 3.27
2329 2369 3.753797 GCTTCCTTGTTTTAGGGTGAGAG 59.246 47.826 0.00 0.00 35.90 3.20
2330 2370 4.747009 GCTTCCTTGTTTTAGGGTGAGAGT 60.747 45.833 0.00 0.00 35.90 3.24
2331 2371 5.377478 CTTCCTTGTTTTAGGGTGAGAGTT 58.623 41.667 0.00 0.00 35.90 3.01
2332 2372 4.714632 TCCTTGTTTTAGGGTGAGAGTTG 58.285 43.478 0.00 0.00 35.90 3.16
2333 2373 4.165372 TCCTTGTTTTAGGGTGAGAGTTGT 59.835 41.667 0.00 0.00 35.90 3.32
2334 2374 4.275936 CCTTGTTTTAGGGTGAGAGTTGTG 59.724 45.833 0.00 0.00 0.00 3.33
2335 2375 4.497291 TGTTTTAGGGTGAGAGTTGTGT 57.503 40.909 0.00 0.00 0.00 3.72
2336 2376 4.448210 TGTTTTAGGGTGAGAGTTGTGTC 58.552 43.478 0.00 0.00 0.00 3.67
2337 2377 3.764237 TTTAGGGTGAGAGTTGTGTCC 57.236 47.619 0.00 0.00 0.00 4.02
2338 2378 2.696526 TAGGGTGAGAGTTGTGTCCT 57.303 50.000 0.00 0.00 0.00 3.85
2339 2379 1.051812 AGGGTGAGAGTTGTGTCCTG 58.948 55.000 0.00 0.00 0.00 3.86
2340 2380 0.759346 GGGTGAGAGTTGTGTCCTGT 59.241 55.000 0.00 0.00 0.00 4.00
2341 2381 1.141053 GGGTGAGAGTTGTGTCCTGTT 59.859 52.381 0.00 0.00 0.00 3.16
2342 2382 2.213499 GGTGAGAGTTGTGTCCTGTTG 58.787 52.381 0.00 0.00 0.00 3.33
2343 2383 2.420129 GGTGAGAGTTGTGTCCTGTTGT 60.420 50.000 0.00 0.00 0.00 3.32
2344 2384 3.181469 GGTGAGAGTTGTGTCCTGTTGTA 60.181 47.826 0.00 0.00 0.00 2.41
2345 2385 3.802685 GTGAGAGTTGTGTCCTGTTGTAC 59.197 47.826 0.00 0.00 0.00 2.90
2346 2386 3.704566 TGAGAGTTGTGTCCTGTTGTACT 59.295 43.478 0.00 0.00 0.00 2.73
2347 2387 4.891168 TGAGAGTTGTGTCCTGTTGTACTA 59.109 41.667 0.00 0.00 0.00 1.82
2348 2388 5.197682 AGAGTTGTGTCCTGTTGTACTAC 57.802 43.478 0.05 0.05 0.00 2.73
2349 2389 4.647853 AGAGTTGTGTCCTGTTGTACTACA 59.352 41.667 9.77 9.77 0.00 2.74
2350 2390 5.304614 AGAGTTGTGTCCTGTTGTACTACAT 59.695 40.000 10.58 0.00 0.00 2.29
2351 2391 5.539048 AGTTGTGTCCTGTTGTACTACATC 58.461 41.667 10.58 5.75 0.00 3.06
2352 2392 5.069914 AGTTGTGTCCTGTTGTACTACATCA 59.930 40.000 10.58 7.97 0.00 3.07
2353 2393 5.738619 TGTGTCCTGTTGTACTACATCAT 57.261 39.130 10.58 0.00 28.64 2.45
2354 2394 5.720202 TGTGTCCTGTTGTACTACATCATC 58.280 41.667 10.58 3.62 28.64 2.92
2355 2395 5.245075 TGTGTCCTGTTGTACTACATCATCA 59.755 40.000 10.58 5.84 28.64 3.07
2356 2396 6.070824 TGTGTCCTGTTGTACTACATCATCAT 60.071 38.462 10.58 0.00 28.64 2.45
2357 2397 6.477033 GTGTCCTGTTGTACTACATCATCATC 59.523 42.308 10.58 0.05 28.64 2.92
2358 2398 6.154363 TGTCCTGTTGTACTACATCATCATCA 59.846 38.462 10.58 2.27 28.64 3.07
2359 2399 7.147672 TGTCCTGTTGTACTACATCATCATCAT 60.148 37.037 10.58 0.00 28.64 2.45
2360 2400 7.170489 GTCCTGTTGTACTACATCATCATCATG 59.830 40.741 10.58 0.00 28.64 3.07
2361 2401 6.073385 CCTGTTGTACTACATCATCATCATGC 60.073 42.308 10.58 0.00 28.64 4.06
2362 2402 6.347696 TGTTGTACTACATCATCATCATGCA 58.652 36.000 6.02 0.00 0.00 3.96
2363 2403 6.480981 TGTTGTACTACATCATCATCATGCAG 59.519 38.462 6.02 0.00 0.00 4.41
2364 2404 5.544650 TGTACTACATCATCATCATGCAGG 58.455 41.667 0.00 0.00 0.00 4.85
2365 2405 3.409570 ACTACATCATCATCATGCAGGC 58.590 45.455 0.00 0.00 0.00 4.85
2366 2406 1.235724 ACATCATCATCATGCAGGCG 58.764 50.000 0.00 0.00 0.00 5.52
2367 2407 1.202722 ACATCATCATCATGCAGGCGA 60.203 47.619 0.00 0.00 0.00 5.54
2368 2408 1.197036 CATCATCATCATGCAGGCGAC 59.803 52.381 0.00 0.00 0.00 5.19
2369 2409 0.533531 TCATCATCATGCAGGCGACC 60.534 55.000 0.00 0.00 0.00 4.79
2370 2410 1.596203 ATCATCATGCAGGCGACCG 60.596 57.895 0.00 0.00 0.00 4.79
2371 2411 2.031674 ATCATCATGCAGGCGACCGA 62.032 55.000 0.00 0.00 0.00 4.69
2372 2412 2.202932 ATCATGCAGGCGACCGAC 60.203 61.111 0.00 0.00 0.00 4.79
2373 2413 3.017771 ATCATGCAGGCGACCGACA 62.018 57.895 0.00 0.00 0.00 4.35
2374 2414 2.315781 ATCATGCAGGCGACCGACAT 62.316 55.000 0.00 0.00 0.00 3.06
2375 2415 2.108514 CATGCAGGCGACCGACATT 61.109 57.895 0.00 0.00 0.00 2.71
2376 2416 2.108514 ATGCAGGCGACCGACATTG 61.109 57.895 0.00 0.00 0.00 2.82
2377 2417 4.166011 GCAGGCGACCGACATTGC 62.166 66.667 0.00 0.00 0.00 3.56
2378 2418 3.853330 CAGGCGACCGACATTGCG 61.853 66.667 0.00 0.00 0.00 4.85
2379 2419 4.063967 AGGCGACCGACATTGCGA 62.064 61.111 0.00 0.00 0.00 5.10
2380 2420 3.849953 GGCGACCGACATTGCGAC 61.850 66.667 0.00 0.00 0.00 5.19
2381 2421 3.849953 GCGACCGACATTGCGACC 61.850 66.667 0.00 0.00 0.00 4.79
2382 2422 2.126071 CGACCGACATTGCGACCT 60.126 61.111 0.00 0.00 0.00 3.85
2383 2423 1.138036 CGACCGACATTGCGACCTA 59.862 57.895 0.00 0.00 0.00 3.08
2384 2424 0.457166 CGACCGACATTGCGACCTAA 60.457 55.000 0.00 0.00 0.00 2.69
2385 2425 1.801395 CGACCGACATTGCGACCTAAT 60.801 52.381 0.00 0.00 0.00 1.73
2386 2426 1.593006 GACCGACATTGCGACCTAATG 59.407 52.381 0.00 0.00 40.48 1.90
2387 2427 1.206132 ACCGACATTGCGACCTAATGA 59.794 47.619 4.87 0.00 38.55 2.57
2388 2428 2.276201 CCGACATTGCGACCTAATGAA 58.724 47.619 4.87 0.00 38.55 2.57
2389 2429 2.872245 CCGACATTGCGACCTAATGAAT 59.128 45.455 4.87 0.00 38.55 2.57
2390 2430 3.312421 CCGACATTGCGACCTAATGAATT 59.688 43.478 4.87 0.00 38.55 2.17
2391 2431 4.201910 CCGACATTGCGACCTAATGAATTT 60.202 41.667 4.87 0.00 38.55 1.82
2392 2432 5.007234 CCGACATTGCGACCTAATGAATTTA 59.993 40.000 4.87 0.00 38.55 1.40
2393 2433 6.457663 CCGACATTGCGACCTAATGAATTTAA 60.458 38.462 4.87 0.00 38.55 1.52
2394 2434 6.628856 CGACATTGCGACCTAATGAATTTAAG 59.371 38.462 4.87 0.00 38.55 1.85
2395 2435 6.265577 ACATTGCGACCTAATGAATTTAAGC 58.734 36.000 4.87 0.00 38.55 3.09
2396 2436 4.893424 TGCGACCTAATGAATTTAAGCC 57.107 40.909 0.00 0.00 0.00 4.35
2397 2437 4.265893 TGCGACCTAATGAATTTAAGCCA 58.734 39.130 0.00 0.00 0.00 4.75
2398 2438 4.887071 TGCGACCTAATGAATTTAAGCCAT 59.113 37.500 0.00 0.00 0.00 4.40
2399 2439 6.058833 TGCGACCTAATGAATTTAAGCCATA 58.941 36.000 0.00 0.00 0.00 2.74
2400 2440 6.544197 TGCGACCTAATGAATTTAAGCCATAA 59.456 34.615 0.00 0.00 0.00 1.90
2401 2441 7.067615 TGCGACCTAATGAATTTAAGCCATAAA 59.932 33.333 0.00 0.00 37.86 1.40
2402 2442 7.591426 GCGACCTAATGAATTTAAGCCATAAAG 59.409 37.037 0.00 0.00 36.94 1.85
2403 2443 8.621286 CGACCTAATGAATTTAAGCCATAAAGT 58.379 33.333 0.00 0.00 36.94 2.66
2409 2449 9.995003 AATGAATTTAAGCCATAAAGTTGACAA 57.005 25.926 0.00 0.00 36.94 3.18
2411 2451 9.421806 TGAATTTAAGCCATAAAGTTGACAATG 57.578 29.630 0.00 0.00 36.94 2.82
2412 2452 7.832503 ATTTAAGCCATAAAGTTGACAATGC 57.167 32.000 0.00 0.00 36.94 3.56
2413 2453 4.870123 AAGCCATAAAGTTGACAATGCA 57.130 36.364 0.00 0.00 0.00 3.96
2414 2454 4.445452 AGCCATAAAGTTGACAATGCAG 57.555 40.909 0.00 0.00 0.00 4.41
2415 2455 4.081406 AGCCATAAAGTTGACAATGCAGA 58.919 39.130 0.00 0.00 0.00 4.26
2416 2456 4.157289 AGCCATAAAGTTGACAATGCAGAG 59.843 41.667 0.00 0.00 0.00 3.35
2417 2457 4.082571 GCCATAAAGTTGACAATGCAGAGT 60.083 41.667 0.00 0.00 0.00 3.24
2418 2458 5.123820 GCCATAAAGTTGACAATGCAGAGTA 59.876 40.000 0.00 0.00 0.00 2.59
2419 2459 6.349280 GCCATAAAGTTGACAATGCAGAGTAA 60.349 38.462 0.00 0.00 0.00 2.24
2420 2460 7.246311 CCATAAAGTTGACAATGCAGAGTAAG 58.754 38.462 0.00 0.00 0.00 2.34
2421 2461 5.695851 AAAGTTGACAATGCAGAGTAAGG 57.304 39.130 0.00 0.00 0.00 2.69
2422 2462 4.357918 AGTTGACAATGCAGAGTAAGGT 57.642 40.909 0.00 0.00 0.00 3.50
2423 2463 5.483685 AGTTGACAATGCAGAGTAAGGTA 57.516 39.130 0.00 0.00 0.00 3.08
2424 2464 6.054860 AGTTGACAATGCAGAGTAAGGTAT 57.945 37.500 0.00 0.00 0.00 2.73
2425 2465 7.182817 AGTTGACAATGCAGAGTAAGGTATA 57.817 36.000 0.00 0.00 0.00 1.47
2426 2466 7.796054 AGTTGACAATGCAGAGTAAGGTATAT 58.204 34.615 0.00 0.00 0.00 0.86
2427 2467 7.712639 AGTTGACAATGCAGAGTAAGGTATATG 59.287 37.037 0.00 0.00 0.00 1.78
2428 2468 7.360113 TGACAATGCAGAGTAAGGTATATGA 57.640 36.000 0.00 0.00 0.00 2.15
2429 2469 7.210174 TGACAATGCAGAGTAAGGTATATGAC 58.790 38.462 0.00 0.00 0.00 3.06
2430 2470 6.216569 ACAATGCAGAGTAAGGTATATGACG 58.783 40.000 0.00 0.00 0.00 4.35
2431 2471 6.040504 ACAATGCAGAGTAAGGTATATGACGA 59.959 38.462 0.00 0.00 0.00 4.20
2432 2472 6.842437 ATGCAGAGTAAGGTATATGACGAT 57.158 37.500 0.00 0.00 0.00 3.73
2433 2473 6.255596 TGCAGAGTAAGGTATATGACGATC 57.744 41.667 0.00 0.00 0.00 3.69
2434 2474 5.768164 TGCAGAGTAAGGTATATGACGATCA 59.232 40.000 0.00 0.00 0.00 2.92
2435 2475 6.264518 TGCAGAGTAAGGTATATGACGATCAA 59.735 38.462 0.00 0.00 0.00 2.57
2436 2476 7.145985 GCAGAGTAAGGTATATGACGATCAAA 58.854 38.462 0.00 0.00 0.00 2.69
2437 2477 7.115095 GCAGAGTAAGGTATATGACGATCAAAC 59.885 40.741 0.00 0.00 0.00 2.93
2438 2478 8.353684 CAGAGTAAGGTATATGACGATCAAACT 58.646 37.037 0.00 0.00 0.00 2.66
2439 2479 8.353684 AGAGTAAGGTATATGACGATCAAACTG 58.646 37.037 0.00 0.00 0.00 3.16
2440 2480 6.924060 AGTAAGGTATATGACGATCAAACTGC 59.076 38.462 0.00 0.00 0.00 4.40
2441 2481 5.276461 AGGTATATGACGATCAAACTGCA 57.724 39.130 0.00 0.00 0.00 4.41
2442 2482 5.292765 AGGTATATGACGATCAAACTGCAG 58.707 41.667 13.48 13.48 0.00 4.41
2443 2483 4.084328 GGTATATGACGATCAAACTGCAGC 60.084 45.833 15.27 0.00 0.00 5.25
2444 2484 1.089920 ATGACGATCAAACTGCAGCC 58.910 50.000 15.27 0.00 0.00 4.85
2445 2485 0.955428 TGACGATCAAACTGCAGCCC 60.955 55.000 15.27 0.00 0.00 5.19
2446 2486 0.955428 GACGATCAAACTGCAGCCCA 60.955 55.000 15.27 0.00 0.00 5.36
2456 2496 2.825861 CTGCAGCCCAGTTGAAAAAT 57.174 45.000 0.00 0.00 36.79 1.82
2457 2497 2.680577 CTGCAGCCCAGTTGAAAAATC 58.319 47.619 0.00 0.00 36.79 2.17
2458 2498 2.298163 CTGCAGCCCAGTTGAAAAATCT 59.702 45.455 0.00 0.00 36.79 2.40
2459 2499 2.036217 TGCAGCCCAGTTGAAAAATCTG 59.964 45.455 0.00 0.00 0.00 2.90
2460 2500 2.297033 GCAGCCCAGTTGAAAAATCTGA 59.703 45.455 0.00 0.00 0.00 3.27
2461 2501 3.613432 GCAGCCCAGTTGAAAAATCTGAG 60.613 47.826 0.00 0.00 0.00 3.35
2462 2502 3.822735 CAGCCCAGTTGAAAAATCTGAGA 59.177 43.478 0.00 0.00 0.00 3.27
2463 2503 4.279169 CAGCCCAGTTGAAAAATCTGAGAA 59.721 41.667 0.00 0.00 0.00 2.87
2464 2504 4.895297 AGCCCAGTTGAAAAATCTGAGAAA 59.105 37.500 0.00 0.00 0.00 2.52
2465 2505 5.541484 AGCCCAGTTGAAAAATCTGAGAAAT 59.459 36.000 0.00 0.00 0.00 2.17
2466 2506 6.721208 AGCCCAGTTGAAAAATCTGAGAAATA 59.279 34.615 0.00 0.00 0.00 1.40
2467 2507 6.808704 GCCCAGTTGAAAAATCTGAGAAATAC 59.191 38.462 0.00 0.00 0.00 1.89
2468 2508 7.523709 GCCCAGTTGAAAAATCTGAGAAATACA 60.524 37.037 0.00 0.00 0.00 2.29
2469 2509 8.025445 CCCAGTTGAAAAATCTGAGAAATACAG 58.975 37.037 0.00 0.00 36.80 2.74
2470 2510 8.786898 CCAGTTGAAAAATCTGAGAAATACAGA 58.213 33.333 0.00 0.00 46.17 3.41
2473 2513 9.950680 GTTGAAAAATCTGAGAAATACAGAACA 57.049 29.630 0.00 0.00 45.44 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.765314 CCACATTCTCTCCCGATTCCT 59.235 52.381 0.00 0.00 0.00 3.36
36 37 1.141881 CGTCCCACATTCTCTCCCG 59.858 63.158 0.00 0.00 0.00 5.14
54 55 5.119694 AGAGAACTCTTGTTTGACTGAACC 58.880 41.667 0.00 0.00 36.31 3.62
59 60 8.738645 AAAACATAGAGAACTCTTGTTTGACT 57.261 30.769 25.72 17.06 42.65 3.41
74 75 4.627467 AGCACGCTGTAGAAAAACATAGAG 59.373 41.667 0.00 0.00 0.00 2.43
140 141 7.809806 CACTTCCATCATCTTTTTCCTGTTAAC 59.190 37.037 0.00 0.00 0.00 2.01
145 146 5.474532 TGACACTTCCATCATCTTTTTCCTG 59.525 40.000 0.00 0.00 0.00 3.86
148 149 5.803967 GCATGACACTTCCATCATCTTTTTC 59.196 40.000 0.00 0.00 33.18 2.29
154 155 3.004419 CCATGCATGACACTTCCATCATC 59.996 47.826 28.31 0.00 33.18 2.92
160 162 1.747355 CCTTCCATGCATGACACTTCC 59.253 52.381 28.31 0.00 0.00 3.46
161 163 2.715046 TCCTTCCATGCATGACACTTC 58.285 47.619 28.31 0.00 0.00 3.01
168 170 3.702548 TCATTTCCTTCCTTCCATGCATG 59.297 43.478 20.19 20.19 0.00 4.06
169 171 3.985127 TCATTTCCTTCCTTCCATGCAT 58.015 40.909 0.00 0.00 0.00 3.96
170 172 3.454719 TCATTTCCTTCCTTCCATGCA 57.545 42.857 0.00 0.00 0.00 3.96
171 173 4.806640 TTTCATTTCCTTCCTTCCATGC 57.193 40.909 0.00 0.00 0.00 4.06
174 176 5.011943 CCACAATTTCATTTCCTTCCTTCCA 59.988 40.000 0.00 0.00 0.00 3.53
214 216 5.200483 CCTTTTGGCCCTAAGATTATCACA 58.800 41.667 13.90 0.00 0.00 3.58
215 217 4.584743 CCCTTTTGGCCCTAAGATTATCAC 59.415 45.833 13.90 0.00 38.58 3.06
223 225 2.550277 ATTCCCCTTTTGGCCCTAAG 57.450 50.000 0.00 3.34 38.58 2.18
236 238 7.282450 TCGCTCTTTCTTAAAATCTAATTCCCC 59.718 37.037 0.00 0.00 0.00 4.81
261 263 9.883142 TTCTTTGAAGAGAGAATTCCTTATCTC 57.117 33.333 12.35 12.35 45.83 2.75
281 283 3.624326 TGGATTTGCGAGTGTTCTTTG 57.376 42.857 0.00 0.00 0.00 2.77
282 284 3.380004 TGTTGGATTTGCGAGTGTTCTTT 59.620 39.130 0.00 0.00 0.00 2.52
358 360 1.400494 GCCGGCAGTGATAATTTTCGT 59.600 47.619 24.80 0.00 0.00 3.85
359 361 1.268539 GGCCGGCAGTGATAATTTTCG 60.269 52.381 30.85 0.00 0.00 3.46
398 400 0.391263 GGATTTGGCGACGAGGAGTT 60.391 55.000 0.00 0.00 0.00 3.01
399 401 1.218316 GGATTTGGCGACGAGGAGT 59.782 57.895 0.00 0.00 0.00 3.85
409 417 2.125952 GTTGCTGCGGGATTTGGC 60.126 61.111 0.00 0.00 0.00 4.52
461 469 3.889044 GCGACTCGCGATCTGGGA 61.889 66.667 10.36 0.00 44.55 4.37
479 487 0.698818 AAATCCTGGAGGGTGGTCAC 59.301 55.000 1.52 0.00 36.25 3.67
558 566 2.991540 GAAGGTGTGGGGCTTGGC 60.992 66.667 0.00 0.00 0.00 4.52
568 576 0.974383 CCGGTACAAGGAGAAGGTGT 59.026 55.000 0.00 0.00 0.00 4.16
574 582 1.569548 AGAGATCCCGGTACAAGGAGA 59.430 52.381 0.00 4.72 33.73 3.71
586 594 1.052617 GGAACAGGGCTAGAGATCCC 58.947 60.000 0.00 0.00 42.94 3.85
594 602 0.619543 GGGTAGGTGGAACAGGGCTA 60.620 60.000 0.00 0.00 41.80 3.93
645 653 0.753111 GTCAACATCAGGGATGGGGC 60.753 60.000 10.64 0.99 43.60 5.80
649 657 2.486191 GCTAGGGTCAACATCAGGGATG 60.486 54.545 4.74 4.74 44.71 3.51
650 658 1.771255 GCTAGGGTCAACATCAGGGAT 59.229 52.381 0.00 0.00 0.00 3.85
651 659 1.204146 GCTAGGGTCAACATCAGGGA 58.796 55.000 0.00 0.00 0.00 4.20
652 660 0.181350 GGCTAGGGTCAACATCAGGG 59.819 60.000 0.00 0.00 0.00 4.45
653 661 0.181350 GGGCTAGGGTCAACATCAGG 59.819 60.000 0.00 0.00 0.00 3.86
654 662 1.134280 CAGGGCTAGGGTCAACATCAG 60.134 57.143 0.00 0.00 0.00 2.90
669 677 3.741830 GAGTAGAAGGCGGCAGGGC 62.742 68.421 13.08 0.00 42.69 5.19
696 707 1.081892 GCTATTCATGGCGATGCGAT 58.918 50.000 3.45 3.58 0.00 4.58
710 721 1.001393 CACGGTGGTTGGGGCTATT 60.001 57.895 0.00 0.00 0.00 1.73
711 722 1.910580 CTCACGGTGGTTGGGGCTAT 61.911 60.000 8.50 0.00 0.00 2.97
712 723 2.527123 TCACGGTGGTTGGGGCTA 60.527 61.111 8.50 0.00 0.00 3.93
726 737 0.667792 GTGGACGAAGGTGAGCTCAC 60.668 60.000 34.25 34.25 45.72 3.51
735 746 1.185618 TGTGAGGAGGTGGACGAAGG 61.186 60.000 0.00 0.00 0.00 3.46
757 768 1.257750 GGGGGAGGCAAAATCGCTTT 61.258 55.000 0.00 0.00 0.00 3.51
758 769 1.682344 GGGGGAGGCAAAATCGCTT 60.682 57.895 0.00 0.00 0.00 4.68
775 787 0.617413 AGAAGTCTGCTGGTGGATGG 59.383 55.000 0.00 0.00 0.00 3.51
870 883 2.127232 GGGCCATTCAACATCCCCG 61.127 63.158 4.39 0.00 0.00 5.73
887 900 3.792047 CAGTGCATGACGCCACGG 61.792 66.667 0.00 0.00 41.33 4.94
977 990 1.404391 CGAGACGGTAACATAGGCTGT 59.596 52.381 0.00 0.00 40.84 4.40
1000 1013 2.306805 TCTTGTCTGACAGATTGGCCAT 59.693 45.455 6.09 0.00 0.00 4.40
1037 1050 6.603201 TGTATCCAAATGATCTCCAAGAAACC 59.397 38.462 0.00 0.00 34.76 3.27
1468 1483 1.470098 CATGCTCGGAAAGACCCAAAG 59.530 52.381 0.00 0.00 34.64 2.77
1502 1517 5.196341 TCACATAGTTCCGTGATCCATAC 57.804 43.478 0.00 0.00 37.23 2.39
1513 1528 6.228258 TGGACAGTAACTTTCACATAGTTCC 58.772 40.000 0.00 0.00 37.12 3.62
1516 1531 6.710744 CCTTTGGACAGTAACTTTCACATAGT 59.289 38.462 0.00 0.00 0.00 2.12
1582 1598 7.710676 TGTAATACACCAAAATAACATGGCT 57.289 32.000 0.00 0.00 40.51 4.75
1613 1629 3.657634 TGCTGCTAAAGAGACTGACAAG 58.342 45.455 0.00 0.00 0.00 3.16
1709 1727 5.163794 CCGAGACTTGCAAATTATTACCGTT 60.164 40.000 0.00 0.00 0.00 4.44
1712 1730 4.879545 TCCCGAGACTTGCAAATTATTACC 59.120 41.667 0.00 0.00 0.00 2.85
1747 1765 5.807011 GCAGAGGAAAACGCAAAAATATGAT 59.193 36.000 0.00 0.00 0.00 2.45
1749 1767 4.922692 TGCAGAGGAAAACGCAAAAATATG 59.077 37.500 0.00 0.00 0.00 1.78
1750 1768 5.048083 TCTGCAGAGGAAAACGCAAAAATAT 60.048 36.000 13.74 0.00 33.21 1.28
1751 1769 4.277174 TCTGCAGAGGAAAACGCAAAAATA 59.723 37.500 13.74 0.00 33.21 1.40
1752 1770 3.068024 TCTGCAGAGGAAAACGCAAAAAT 59.932 39.130 13.74 0.00 33.21 1.82
1753 1771 2.425312 TCTGCAGAGGAAAACGCAAAAA 59.575 40.909 13.74 0.00 33.21 1.94
1822 1843 4.754618 TGATTTGAATACACTGACTTGCGT 59.245 37.500 0.00 0.00 0.00 5.24
1844 1865 5.287274 CACTGACTTACGAGCTGATTTAGTG 59.713 44.000 0.00 0.00 0.00 2.74
1848 1869 3.990469 CACACTGACTTACGAGCTGATTT 59.010 43.478 0.00 0.00 0.00 2.17
1895 1916 6.463360 ACCATAATTGAAAAGAAAACGGCAT 58.537 32.000 0.00 0.00 0.00 4.40
1930 1951 7.732140 TGCCATATTAATTGGGGATGAAACATA 59.268 33.333 14.57 0.00 34.66 2.29
1965 1986 3.476552 TGGGTCACTCACAAATGACTTC 58.523 45.455 4.53 0.00 43.91 3.01
1977 1998 1.967319 TTTGTGCTTCTGGGTCACTC 58.033 50.000 0.00 0.00 0.00 3.51
1996 2026 1.217244 GGTGGTCCGTAGCATCGTT 59.783 57.895 0.00 0.00 35.16 3.85
2008 2038 1.639635 ATGCTCCCATCCTGGTGGTC 61.640 60.000 12.36 4.54 37.57 4.02
2047 2077 2.888594 CGTGAACGATTACCCTGATGT 58.111 47.619 0.00 0.00 43.02 3.06
2048 2078 1.593006 GCGTGAACGATTACCCTGATG 59.407 52.381 7.10 0.00 43.02 3.07
2125 2155 5.368145 TCATGGTGAAATAGCAGTGGATAC 58.632 41.667 0.00 0.00 40.65 2.24
2131 2162 3.354948 TGCTCATGGTGAAATAGCAGT 57.645 42.857 0.00 0.00 40.65 4.40
2133 2164 3.054875 ACTCTGCTCATGGTGAAATAGCA 60.055 43.478 3.34 3.34 40.68 3.49
2166 2197 5.472137 GCGGACATTACATACCCATGTTAAT 59.528 40.000 0.00 0.00 42.98 1.40
2168 2199 4.382291 GCGGACATTACATACCCATGTTA 58.618 43.478 0.00 0.00 42.98 2.41
2199 2230 5.833131 TCTTACAGGCTTGTCCAAAAGATTT 59.167 36.000 4.04 0.00 38.76 2.17
2208 2239 4.035675 GCATTATGTCTTACAGGCTTGTCC 59.964 45.833 4.04 0.00 38.76 4.02
2215 2255 6.057533 TGGAATCAGCATTATGTCTTACAGG 58.942 40.000 0.00 0.00 0.00 4.00
2216 2256 6.204301 CCTGGAATCAGCATTATGTCTTACAG 59.796 42.308 0.00 0.00 39.61 2.74
2217 2257 6.057533 CCTGGAATCAGCATTATGTCTTACA 58.942 40.000 0.00 0.00 39.61 2.41
2218 2258 6.291377 TCCTGGAATCAGCATTATGTCTTAC 58.709 40.000 0.00 0.00 39.61 2.34
2219 2259 6.499106 TCCTGGAATCAGCATTATGTCTTA 57.501 37.500 0.00 0.00 39.61 2.10
2220 2260 5.378230 TCCTGGAATCAGCATTATGTCTT 57.622 39.130 0.00 0.00 39.61 3.01
2221 2261 5.072736 TCATCCTGGAATCAGCATTATGTCT 59.927 40.000 0.00 0.00 39.61 3.41
2222 2262 5.311265 TCATCCTGGAATCAGCATTATGTC 58.689 41.667 0.00 0.00 39.61 3.06
2223 2263 5.314718 TCATCCTGGAATCAGCATTATGT 57.685 39.130 0.00 0.00 39.61 2.29
2230 2270 5.128919 ACTACAAATCATCCTGGAATCAGC 58.871 41.667 0.00 0.00 39.61 4.26
2234 2274 8.554490 ACTAGTACTACAAATCATCCTGGAAT 57.446 34.615 0.00 0.00 0.00 3.01
2256 2296 9.074576 TCTAAGCTGGAACGATATGAAATACTA 57.925 33.333 0.00 0.00 0.00 1.82
2270 2310 5.542779 TGAAGAAGTTCTCTAAGCTGGAAC 58.457 41.667 5.70 11.61 39.43 3.62
2288 2328 3.974719 AGCATCTCTCACCTACTGAAGA 58.025 45.455 0.00 0.00 0.00 2.87
2289 2329 4.441356 GGAAGCATCTCTCACCTACTGAAG 60.441 50.000 0.00 0.00 0.00 3.02
2290 2330 3.449018 GGAAGCATCTCTCACCTACTGAA 59.551 47.826 0.00 0.00 0.00 3.02
2291 2331 3.027412 GGAAGCATCTCTCACCTACTGA 58.973 50.000 0.00 0.00 0.00 3.41
2292 2332 3.030291 AGGAAGCATCTCTCACCTACTG 58.970 50.000 0.00 0.00 32.41 2.74
2293 2333 3.396685 AGGAAGCATCTCTCACCTACT 57.603 47.619 0.00 0.00 32.41 2.57
2294 2334 3.196685 ACAAGGAAGCATCTCTCACCTAC 59.803 47.826 0.00 0.00 33.34 3.18
2295 2335 3.445008 ACAAGGAAGCATCTCTCACCTA 58.555 45.455 0.00 0.00 33.34 3.08
2296 2336 2.264455 ACAAGGAAGCATCTCTCACCT 58.736 47.619 0.00 0.00 34.51 4.00
2297 2337 2.777832 ACAAGGAAGCATCTCTCACC 57.222 50.000 0.00 0.00 0.00 4.02
2298 2338 5.123027 CCTAAAACAAGGAAGCATCTCTCAC 59.877 44.000 0.00 0.00 39.15 3.51
2299 2339 5.248640 CCTAAAACAAGGAAGCATCTCTCA 58.751 41.667 0.00 0.00 39.15 3.27
2300 2340 4.637977 CCCTAAAACAAGGAAGCATCTCTC 59.362 45.833 0.00 0.00 39.15 3.20
2301 2341 4.043435 ACCCTAAAACAAGGAAGCATCTCT 59.957 41.667 0.00 0.00 39.15 3.10
2302 2342 4.156739 CACCCTAAAACAAGGAAGCATCTC 59.843 45.833 0.00 0.00 39.15 2.75
2303 2343 4.082125 CACCCTAAAACAAGGAAGCATCT 58.918 43.478 0.00 0.00 39.15 2.90
2304 2344 4.079253 TCACCCTAAAACAAGGAAGCATC 58.921 43.478 0.00 0.00 39.15 3.91
2305 2345 4.082125 CTCACCCTAAAACAAGGAAGCAT 58.918 43.478 0.00 0.00 39.15 3.79
2306 2346 3.137544 TCTCACCCTAAAACAAGGAAGCA 59.862 43.478 0.00 0.00 39.15 3.91
2307 2347 3.751518 TCTCACCCTAAAACAAGGAAGC 58.248 45.455 0.00 0.00 39.15 3.86
2308 2348 4.974399 ACTCTCACCCTAAAACAAGGAAG 58.026 43.478 0.00 0.00 39.15 3.46
2309 2349 5.130350 CAACTCTCACCCTAAAACAAGGAA 58.870 41.667 0.00 0.00 39.15 3.36
2310 2350 4.165372 ACAACTCTCACCCTAAAACAAGGA 59.835 41.667 0.00 0.00 39.15 3.36
2311 2351 4.275936 CACAACTCTCACCCTAAAACAAGG 59.724 45.833 0.00 0.00 36.30 3.61
2312 2352 4.881850 ACACAACTCTCACCCTAAAACAAG 59.118 41.667 0.00 0.00 0.00 3.16
2313 2353 4.850680 ACACAACTCTCACCCTAAAACAA 58.149 39.130 0.00 0.00 0.00 2.83
2314 2354 4.448210 GACACAACTCTCACCCTAAAACA 58.552 43.478 0.00 0.00 0.00 2.83
2315 2355 3.813724 GGACACAACTCTCACCCTAAAAC 59.186 47.826 0.00 0.00 0.00 2.43
2316 2356 3.714798 AGGACACAACTCTCACCCTAAAA 59.285 43.478 0.00 0.00 0.00 1.52
2317 2357 3.071023 CAGGACACAACTCTCACCCTAAA 59.929 47.826 0.00 0.00 0.00 1.85
2318 2358 2.632996 CAGGACACAACTCTCACCCTAA 59.367 50.000 0.00 0.00 0.00 2.69
2319 2359 2.248248 CAGGACACAACTCTCACCCTA 58.752 52.381 0.00 0.00 0.00 3.53
2320 2360 1.051812 CAGGACACAACTCTCACCCT 58.948 55.000 0.00 0.00 0.00 4.34
2321 2361 0.759346 ACAGGACACAACTCTCACCC 59.241 55.000 0.00 0.00 0.00 4.61
2322 2362 2.213499 CAACAGGACACAACTCTCACC 58.787 52.381 0.00 0.00 0.00 4.02
2323 2363 2.906354 ACAACAGGACACAACTCTCAC 58.094 47.619 0.00 0.00 0.00 3.51
2324 2364 3.704566 AGTACAACAGGACACAACTCTCA 59.295 43.478 0.00 0.00 0.00 3.27
2325 2365 4.323553 AGTACAACAGGACACAACTCTC 57.676 45.455 0.00 0.00 0.00 3.20
2326 2366 4.647853 TGTAGTACAACAGGACACAACTCT 59.352 41.667 0.00 0.00 0.00 3.24
2327 2367 4.940463 TGTAGTACAACAGGACACAACTC 58.060 43.478 0.00 0.00 0.00 3.01
2328 2368 5.069914 TGATGTAGTACAACAGGACACAACT 59.930 40.000 7.16 0.00 31.70 3.16
2329 2369 5.294356 TGATGTAGTACAACAGGACACAAC 58.706 41.667 7.16 0.00 31.70 3.32
2330 2370 5.538849 TGATGTAGTACAACAGGACACAA 57.461 39.130 7.16 0.00 31.70 3.33
2331 2371 5.245075 TGATGATGTAGTACAACAGGACACA 59.755 40.000 17.01 9.82 34.38 3.72
2332 2372 5.720202 TGATGATGTAGTACAACAGGACAC 58.280 41.667 17.01 7.91 34.38 3.67
2333 2373 5.993748 TGATGATGTAGTACAACAGGACA 57.006 39.130 17.01 13.63 34.38 4.02
2334 2374 6.573434 TGATGATGATGTAGTACAACAGGAC 58.427 40.000 17.01 11.72 34.38 3.85
2335 2375 6.790232 TGATGATGATGTAGTACAACAGGA 57.210 37.500 17.01 7.77 34.38 3.86
2336 2376 6.073385 GCATGATGATGATGTAGTACAACAGG 60.073 42.308 17.01 7.87 34.38 4.00
2337 2377 6.480981 TGCATGATGATGATGTAGTACAACAG 59.519 38.462 17.01 4.82 34.38 3.16
2338 2378 6.347696 TGCATGATGATGATGTAGTACAACA 58.652 36.000 14.75 14.75 35.37 3.33
2339 2379 6.073385 CCTGCATGATGATGATGTAGTACAAC 60.073 42.308 7.16 5.27 33.14 3.32
2340 2380 5.993441 CCTGCATGATGATGATGTAGTACAA 59.007 40.000 7.16 0.00 33.14 2.41
2341 2381 5.544650 CCTGCATGATGATGATGTAGTACA 58.455 41.667 5.24 5.24 33.14 2.90
2342 2382 4.391216 GCCTGCATGATGATGATGTAGTAC 59.609 45.833 8.84 0.00 33.14 2.73
2343 2383 4.572909 GCCTGCATGATGATGATGTAGTA 58.427 43.478 8.84 0.00 33.14 1.82
2344 2384 3.409570 GCCTGCATGATGATGATGTAGT 58.590 45.455 8.84 0.00 33.14 2.73
2345 2385 2.415512 CGCCTGCATGATGATGATGTAG 59.584 50.000 3.22 3.22 34.37 2.74
2346 2386 2.037511 TCGCCTGCATGATGATGATGTA 59.962 45.455 0.00 0.00 0.00 2.29
2347 2387 1.202722 TCGCCTGCATGATGATGATGT 60.203 47.619 0.00 0.00 0.00 3.06
2348 2388 1.197036 GTCGCCTGCATGATGATGATG 59.803 52.381 0.00 0.00 0.00 3.07
2349 2389 1.520494 GTCGCCTGCATGATGATGAT 58.480 50.000 0.00 0.00 0.00 2.45
2350 2390 0.533531 GGTCGCCTGCATGATGATGA 60.534 55.000 0.00 0.00 0.00 2.92
2351 2391 1.838568 CGGTCGCCTGCATGATGATG 61.839 60.000 0.00 0.00 0.00 3.07
2352 2392 1.596203 CGGTCGCCTGCATGATGAT 60.596 57.895 0.00 0.00 0.00 2.45
2353 2393 2.202919 CGGTCGCCTGCATGATGA 60.203 61.111 0.00 0.00 0.00 2.92
2354 2394 2.202919 TCGGTCGCCTGCATGATG 60.203 61.111 0.00 0.00 0.00 3.07
2355 2395 2.202932 GTCGGTCGCCTGCATGAT 60.203 61.111 0.00 0.00 0.00 2.45
2356 2396 2.520465 AATGTCGGTCGCCTGCATGA 62.520 55.000 0.00 0.00 0.00 3.07
2357 2397 2.108514 AATGTCGGTCGCCTGCATG 61.109 57.895 0.00 0.00 0.00 4.06
2358 2398 2.108514 CAATGTCGGTCGCCTGCAT 61.109 57.895 0.00 0.00 0.00 3.96
2359 2399 2.741985 CAATGTCGGTCGCCTGCA 60.742 61.111 0.00 0.00 0.00 4.41
2360 2400 4.166011 GCAATGTCGGTCGCCTGC 62.166 66.667 0.00 0.00 0.00 4.85
2361 2401 3.853330 CGCAATGTCGGTCGCCTG 61.853 66.667 0.00 0.00 0.00 4.85
2362 2402 4.063967 TCGCAATGTCGGTCGCCT 62.064 61.111 0.00 0.00 0.00 5.52
2363 2403 3.849953 GTCGCAATGTCGGTCGCC 61.850 66.667 0.00 0.00 0.00 5.54
2364 2404 2.877360 TAGGTCGCAATGTCGGTCGC 62.877 60.000 0.00 0.00 0.00 5.19
2365 2405 0.457166 TTAGGTCGCAATGTCGGTCG 60.457 55.000 0.00 0.00 0.00 4.79
2366 2406 1.593006 CATTAGGTCGCAATGTCGGTC 59.407 52.381 0.00 0.00 0.00 4.79
2367 2407 1.206132 TCATTAGGTCGCAATGTCGGT 59.794 47.619 0.00 0.00 35.36 4.69
2368 2408 1.934589 TCATTAGGTCGCAATGTCGG 58.065 50.000 0.00 0.00 35.36 4.79
2369 2409 4.536364 AATTCATTAGGTCGCAATGTCG 57.464 40.909 0.00 0.00 35.36 4.35
2370 2410 6.414987 GCTTAAATTCATTAGGTCGCAATGTC 59.585 38.462 0.00 0.00 35.36 3.06
2371 2411 6.265577 GCTTAAATTCATTAGGTCGCAATGT 58.734 36.000 0.00 0.00 35.36 2.71
2372 2412 5.687285 GGCTTAAATTCATTAGGTCGCAATG 59.313 40.000 0.00 0.00 35.19 2.82
2373 2413 5.359576 TGGCTTAAATTCATTAGGTCGCAAT 59.640 36.000 0.00 0.00 28.29 3.56
2374 2414 4.702612 TGGCTTAAATTCATTAGGTCGCAA 59.297 37.500 0.00 0.00 28.29 4.85
2375 2415 4.265893 TGGCTTAAATTCATTAGGTCGCA 58.734 39.130 0.00 0.00 28.29 5.10
2376 2416 4.893424 TGGCTTAAATTCATTAGGTCGC 57.107 40.909 0.00 0.00 28.29 5.19
2377 2417 8.621286 ACTTTATGGCTTAAATTCATTAGGTCG 58.379 33.333 6.09 0.00 28.29 4.79
2383 2423 9.995003 TTGTCAACTTTATGGCTTAAATTCATT 57.005 25.926 6.09 0.00 0.00 2.57
2385 2425 9.421806 CATTGTCAACTTTATGGCTTAAATTCA 57.578 29.630 6.09 0.93 0.00 2.57
2386 2426 8.382875 GCATTGTCAACTTTATGGCTTAAATTC 58.617 33.333 6.09 0.00 0.00 2.17
2387 2427 7.877097 TGCATTGTCAACTTTATGGCTTAAATT 59.123 29.630 6.09 0.00 0.00 1.82
2388 2428 7.385267 TGCATTGTCAACTTTATGGCTTAAAT 58.615 30.769 6.09 0.00 0.00 1.40
2389 2429 6.753180 TGCATTGTCAACTTTATGGCTTAAA 58.247 32.000 5.58 5.58 0.00 1.52
2390 2430 6.208402 TCTGCATTGTCAACTTTATGGCTTAA 59.792 34.615 0.00 0.00 0.00 1.85
2391 2431 5.709631 TCTGCATTGTCAACTTTATGGCTTA 59.290 36.000 0.00 0.00 0.00 3.09
2392 2432 4.523943 TCTGCATTGTCAACTTTATGGCTT 59.476 37.500 0.00 0.00 0.00 4.35
2393 2433 4.081406 TCTGCATTGTCAACTTTATGGCT 58.919 39.130 0.00 0.00 0.00 4.75
2394 2434 4.082571 ACTCTGCATTGTCAACTTTATGGC 60.083 41.667 0.00 0.00 0.00 4.40
2395 2435 5.633830 ACTCTGCATTGTCAACTTTATGG 57.366 39.130 0.00 0.00 0.00 2.74
2396 2436 7.094634 ACCTTACTCTGCATTGTCAACTTTATG 60.095 37.037 0.00 0.00 0.00 1.90
2397 2437 6.942576 ACCTTACTCTGCATTGTCAACTTTAT 59.057 34.615 0.00 0.00 0.00 1.40
2398 2438 6.296026 ACCTTACTCTGCATTGTCAACTTTA 58.704 36.000 0.00 0.00 0.00 1.85
2399 2439 5.133221 ACCTTACTCTGCATTGTCAACTTT 58.867 37.500 0.00 0.00 0.00 2.66
2400 2440 4.718961 ACCTTACTCTGCATTGTCAACTT 58.281 39.130 0.00 0.00 0.00 2.66
2401 2441 4.357918 ACCTTACTCTGCATTGTCAACT 57.642 40.909 0.00 0.00 0.00 3.16
2402 2442 7.710907 TCATATACCTTACTCTGCATTGTCAAC 59.289 37.037 0.00 0.00 0.00 3.18
2403 2443 7.710907 GTCATATACCTTACTCTGCATTGTCAA 59.289 37.037 0.00 0.00 0.00 3.18
2404 2444 7.210174 GTCATATACCTTACTCTGCATTGTCA 58.790 38.462 0.00 0.00 0.00 3.58
2405 2445 6.363626 CGTCATATACCTTACTCTGCATTGTC 59.636 42.308 0.00 0.00 0.00 3.18
2406 2446 6.040504 TCGTCATATACCTTACTCTGCATTGT 59.959 38.462 0.00 0.00 0.00 2.71
2407 2447 6.447162 TCGTCATATACCTTACTCTGCATTG 58.553 40.000 0.00 0.00 0.00 2.82
2408 2448 6.650427 TCGTCATATACCTTACTCTGCATT 57.350 37.500 0.00 0.00 0.00 3.56
2409 2449 6.434340 TGATCGTCATATACCTTACTCTGCAT 59.566 38.462 0.00 0.00 0.00 3.96
2410 2450 5.768164 TGATCGTCATATACCTTACTCTGCA 59.232 40.000 0.00 0.00 0.00 4.41
2411 2451 6.255596 TGATCGTCATATACCTTACTCTGC 57.744 41.667 0.00 0.00 0.00 4.26
2412 2452 8.353684 AGTTTGATCGTCATATACCTTACTCTG 58.646 37.037 0.00 0.00 0.00 3.35
2413 2453 8.353684 CAGTTTGATCGTCATATACCTTACTCT 58.646 37.037 0.00 0.00 0.00 3.24
2414 2454 7.115095 GCAGTTTGATCGTCATATACCTTACTC 59.885 40.741 0.00 0.00 0.00 2.59
2415 2455 6.924060 GCAGTTTGATCGTCATATACCTTACT 59.076 38.462 0.00 0.00 0.00 2.24
2416 2456 6.700081 TGCAGTTTGATCGTCATATACCTTAC 59.300 38.462 0.00 0.00 0.00 2.34
2417 2457 6.811954 TGCAGTTTGATCGTCATATACCTTA 58.188 36.000 0.00 0.00 0.00 2.69
2418 2458 5.670485 TGCAGTTTGATCGTCATATACCTT 58.330 37.500 0.00 0.00 0.00 3.50
2419 2459 5.276461 TGCAGTTTGATCGTCATATACCT 57.724 39.130 0.00 0.00 0.00 3.08
2420 2460 4.084328 GCTGCAGTTTGATCGTCATATACC 60.084 45.833 16.64 0.00 0.00 2.73
2421 2461 4.084328 GGCTGCAGTTTGATCGTCATATAC 60.084 45.833 16.64 0.00 0.00 1.47
2422 2462 4.058124 GGCTGCAGTTTGATCGTCATATA 58.942 43.478 16.64 0.00 0.00 0.86
2423 2463 2.874701 GGCTGCAGTTTGATCGTCATAT 59.125 45.455 16.64 0.00 0.00 1.78
2424 2464 2.279741 GGCTGCAGTTTGATCGTCATA 58.720 47.619 16.64 0.00 0.00 2.15
2425 2465 1.089920 GGCTGCAGTTTGATCGTCAT 58.910 50.000 16.64 0.00 0.00 3.06
2426 2466 0.955428 GGGCTGCAGTTTGATCGTCA 60.955 55.000 16.64 0.00 0.00 4.35
2427 2467 0.955428 TGGGCTGCAGTTTGATCGTC 60.955 55.000 16.64 0.00 0.00 4.20
2428 2468 0.957395 CTGGGCTGCAGTTTGATCGT 60.957 55.000 16.64 0.00 0.00 3.73
2429 2469 0.957395 ACTGGGCTGCAGTTTGATCG 60.957 55.000 16.64 0.55 0.00 3.69
2430 2470 1.068055 CAACTGGGCTGCAGTTTGATC 60.068 52.381 16.64 0.00 40.51 2.92
2431 2471 0.963962 CAACTGGGCTGCAGTTTGAT 59.036 50.000 16.64 0.00 40.51 2.57
2432 2472 0.106769 TCAACTGGGCTGCAGTTTGA 60.107 50.000 16.64 12.92 40.51 2.69
2433 2473 0.746063 TTCAACTGGGCTGCAGTTTG 59.254 50.000 16.64 10.93 40.51 2.93
2434 2474 1.484038 TTTCAACTGGGCTGCAGTTT 58.516 45.000 16.64 0.00 40.51 2.66
2435 2475 1.484038 TTTTCAACTGGGCTGCAGTT 58.516 45.000 16.64 3.65 42.93 3.16
2436 2476 1.484038 TTTTTCAACTGGGCTGCAGT 58.516 45.000 16.64 0.00 33.80 4.40
2437 2477 2.298163 AGATTTTTCAACTGGGCTGCAG 59.702 45.455 10.11 10.11 0.00 4.41
2438 2478 2.036217 CAGATTTTTCAACTGGGCTGCA 59.964 45.455 0.50 0.00 0.00 4.41
2439 2479 2.297033 TCAGATTTTTCAACTGGGCTGC 59.703 45.455 0.00 0.00 33.19 5.25
2440 2480 3.822735 TCTCAGATTTTTCAACTGGGCTG 59.177 43.478 0.00 0.00 32.83 4.85
2441 2481 4.104383 TCTCAGATTTTTCAACTGGGCT 57.896 40.909 0.00 0.00 32.83 5.19
2442 2482 4.853924 TTCTCAGATTTTTCAACTGGGC 57.146 40.909 0.00 0.00 32.83 5.36
2443 2483 7.885297 TGTATTTCTCAGATTTTTCAACTGGG 58.115 34.615 0.00 0.00 33.93 4.45
2444 2484 8.786898 TCTGTATTTCTCAGATTTTTCAACTGG 58.213 33.333 0.00 0.00 37.07 4.00
2447 2487 9.950680 TGTTCTGTATTTCTCAGATTTTTCAAC 57.049 29.630 0.00 0.00 40.83 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.