Multiple sequence alignment - TraesCS3D01G468700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G468700 chr3D 100.000 2372 0 0 1 2372 571015936 571013565 0.000000e+00 4381.0
1 TraesCS3D01G468700 chr3D 88.486 938 53 17 664 1583 571055449 571054549 0.000000e+00 1083.0
2 TraesCS3D01G468700 chr3D 85.744 484 44 16 1570 2047 571052708 571052244 2.740000e-134 488.0
3 TraesCS3D01G468700 chr3D 92.490 253 15 2 1 253 571057870 571057622 2.240000e-95 359.0
4 TraesCS3D01G468700 chr3D 83.099 355 44 13 341 688 571057177 571056832 2.290000e-80 309.0
5 TraesCS3D01G468700 chr3D 90.323 62 6 0 2241 2302 571013911 571013850 5.430000e-12 82.4
6 TraesCS3D01G468700 chr3B 94.384 1193 51 6 634 1811 757951427 757950236 0.000000e+00 1818.0
7 TraesCS3D01G468700 chr3B 83.546 626 41 23 1 598 757952304 757951713 1.610000e-146 529.0
8 TraesCS3D01G468700 chr3B 93.539 356 20 3 1805 2158 757948598 757948244 5.810000e-146 527.0
9 TraesCS3D01G468700 chr3B 79.437 355 47 14 1 344 741335943 741335604 6.600000e-56 228.0
10 TraesCS3D01G468700 chr3B 89.583 144 14 1 2230 2372 757948222 757948079 5.210000e-42 182.0
11 TraesCS3D01G468700 chr3B 90.164 61 6 0 2242 2302 757948375 757948315 1.950000e-11 80.5
12 TraesCS3D01G468700 chr3A 88.777 1096 60 27 673 1719 703908098 703907017 0.000000e+00 1284.0
13 TraesCS3D01G468700 chr3A 88.506 348 27 5 1 344 703909072 703908734 2.190000e-110 409.0
14 TraesCS3D01G468700 chr6B 89.311 421 42 3 1743 2162 13500629 13501047 2.090000e-145 525.0
15 TraesCS3D01G468700 chr6B 89.074 421 42 4 1743 2162 13506172 13506589 9.720000e-144 520.0
16 TraesCS3D01G468700 chr6B 88.675 415 44 3 1743 2156 13529443 13529855 9.790000e-139 503.0
17 TraesCS3D01G468700 chr6B 88.361 421 46 3 1743 2162 13556235 13556653 9.790000e-139 503.0
18 TraesCS3D01G468700 chr6B 88.124 421 47 3 1743 2162 13521917 13522335 4.550000e-137 497.0
19 TraesCS3D01G468700 chr6B 87.059 425 51 4 1739 2162 13601126 13601547 5.930000e-131 477.0
20 TraesCS3D01G468700 chr6B 78.517 782 99 36 921 1673 13521003 13521744 1.290000e-122 449.0
21 TraesCS3D01G468700 chr6B 78.361 781 101 36 921 1673 13600216 13600956 6.020000e-121 444.0
22 TraesCS3D01G468700 chr6B 77.764 796 97 45 921 1673 13555304 13556062 1.310000e-112 416.0
23 TraesCS3D01G468700 chr6B 76.913 797 104 44 921 1673 13499696 13500456 1.720000e-101 379.0
24 TraesCS3D01G468700 chr6B 88.930 271 28 2 1893 2162 13596593 13596862 1.360000e-87 333.0
25 TraesCS3D01G468700 chr6B 78.091 461 55 24 1232 1673 13528837 13529270 1.410000e-62 250.0
26 TraesCS3D01G468700 chr6B 81.013 158 24 4 521 673 13599950 13600106 1.150000e-23 121.0
27 TraesCS3D01G468700 chr6B 80.745 161 19 5 521 673 13520737 13520893 5.360000e-22 115.0
28 TraesCS3D01G468700 chr6B 80.392 153 24 4 526 673 13555043 13555194 6.930000e-21 111.0
29 TraesCS3D01G468700 chr6B 79.747 158 26 4 521 673 13499430 13499586 2.490000e-20 110.0
30 TraesCS3D01G468700 chr6B 90.566 53 5 0 2239 2291 13500910 13500962 1.180000e-08 71.3
31 TraesCS3D01G468700 chr6B 88.679 53 6 0 2239 2291 13506452 13506504 5.470000e-07 65.8
32 TraesCS3D01G468700 chr6B 88.679 53 6 0 2239 2291 13522198 13522250 5.470000e-07 65.8
33 TraesCS3D01G468700 chr6B 88.679 53 6 0 2239 2291 13556516 13556568 5.470000e-07 65.8
34 TraesCS3D01G468700 chr6B 93.023 43 3 0 2249 2291 13539814 13539856 1.970000e-06 63.9
35 TraesCS3D01G468700 chr1A 85.057 87 10 2 398 481 475411108 475411194 4.200000e-13 86.1
36 TraesCS3D01G468700 chr2D 84.810 79 11 1 398 475 436703742 436703664 7.030000e-11 78.7
37 TraesCS3D01G468700 chr2D 82.222 90 10 4 398 482 99658208 99658120 3.270000e-09 73.1
38 TraesCS3D01G468700 chr2B 82.105 95 13 3 392 482 448132469 448132563 7.030000e-11 78.7
39 TraesCS3D01G468700 chr5D 82.716 81 12 2 396 475 52248558 52248479 1.180000e-08 71.3
40 TraesCS3D01G468700 chr5A 100.000 33 0 0 398 430 364572377 364572409 7.080000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G468700 chr3D 571013565 571015936 2371 True 2231.700 4381 95.16150 1 2372 2 chr3D.!!$R1 2371
1 TraesCS3D01G468700 chr3D 571052244 571057870 5626 True 559.750 1083 87.45475 1 2047 4 chr3D.!!$R2 2046
2 TraesCS3D01G468700 chr3B 757948079 757952304 4225 True 627.300 1818 90.24320 1 2372 5 chr3B.!!$R2 2371
3 TraesCS3D01G468700 chr3A 703907017 703909072 2055 True 846.500 1284 88.64150 1 1719 2 chr3A.!!$R1 1718
4 TraesCS3D01G468700 chr6B 13528837 13529855 1018 False 376.500 503 83.38300 1232 2156 2 chr6B.!!$F5 924
5 TraesCS3D01G468700 chr6B 13596593 13601547 4954 False 343.750 477 83.84075 521 2162 4 chr6B.!!$F7 1641
6 TraesCS3D01G468700 chr6B 13520737 13522335 1598 False 281.700 497 84.01625 521 2291 4 chr6B.!!$F4 1770
7 TraesCS3D01G468700 chr6B 13555043 13556653 1610 False 273.950 503 83.79900 526 2291 4 chr6B.!!$F6 1765
8 TraesCS3D01G468700 chr6B 13499430 13501047 1617 False 271.325 525 84.13425 521 2291 4 chr6B.!!$F2 1770

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
242 246 0.384309 TATCACTAGCGACGCCCAAG 59.616 55.0 17.79 14.1 0.0 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2171 10378 0.037419 GGTCGTAAGTAACCCCGCAA 60.037 55.0 0.0 0.0 39.48 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 2.436542 TCAAACAGGAGGAAAGAACGGA 59.563 45.455 0.00 0.00 0.00 4.69
235 239 3.355626 TGCATGTCTATCACTAGCGAC 57.644 47.619 0.00 0.00 0.00 5.19
242 246 0.384309 TATCACTAGCGACGCCCAAG 59.616 55.000 17.79 14.10 0.00 3.61
253 258 2.791927 GCCCAAGAAACGGCGATC 59.208 61.111 16.62 11.85 34.94 3.69
257 580 1.202177 CCCAAGAAACGGCGATCAATG 60.202 52.381 16.62 13.70 0.00 2.82
417 1126 0.898320 ACTCCCTCCGTCTCACAATG 59.102 55.000 0.00 0.00 0.00 2.82
440 1149 8.967552 ATGTAAGACGTTTTTACAAACAAACA 57.032 26.923 22.27 8.56 42.40 2.83
492 1208 6.660094 AGACGGAGAGTAGTTTACTTCATTCT 59.340 38.462 0.00 0.00 39.59 2.40
514 1230 1.602851 CGTGGAGGACCTGATACGTAG 59.397 57.143 0.00 0.00 37.04 3.51
551 3389 3.558411 GCCGCTGCACTCGCTTAG 61.558 66.667 0.00 0.00 39.64 2.18
598 3653 2.159421 CCAGCGTCACTTCACGTACTAT 60.159 50.000 0.00 0.00 42.04 2.12
708 5173 5.437060 ACTTGTGTGACCTTTAACTCACAT 58.563 37.500 11.20 0.00 46.42 3.21
729 5194 8.377034 TCACATATCTACTAGGAGTAGGAGTTC 58.623 40.741 12.53 0.00 46.25 3.01
743 5208 6.712276 AGTAGGAGTTCTAAAGGATGGTTTG 58.288 40.000 0.00 0.00 0.00 2.93
749 5214 1.743394 CTAAAGGATGGTTTGCCCGAC 59.257 52.381 0.00 0.00 35.15 4.79
755 5220 2.063015 ATGGTTTGCCCGACCTGTCA 62.063 55.000 0.00 0.00 38.04 3.58
767 5232 0.611062 ACCTGTCACTACGCCTAGCA 60.611 55.000 0.00 0.00 0.00 3.49
821 5293 4.043037 AGTACTCTTGCACGGTATAAGC 57.957 45.455 0.00 0.00 0.00 3.09
832 5304 1.133598 CGGTATAAGCCAGACACACGA 59.866 52.381 0.00 0.00 0.00 4.35
847 5338 4.693525 CGAACGCCGGCCCAAAAC 62.694 66.667 23.46 5.76 33.91 2.43
900 5391 3.058914 CGGGAATTAATCTTCGGATGTGC 60.059 47.826 0.00 0.00 34.49 4.57
1095 5610 3.127533 GCAGGGCGTGTGTCATCC 61.128 66.667 9.16 0.00 0.00 3.51
1099 5614 2.813908 GGCGTGTGTCATCCGTCC 60.814 66.667 0.00 0.00 0.00 4.79
1416 5973 2.742053 CCACTAAGGTGACGGACAAATG 59.258 50.000 0.00 0.00 45.61 2.32
1449 6016 5.927689 CCACTAAGTCGTAATGGTGTAACAA 59.072 40.000 0.00 0.00 39.98 2.83
1616 8066 0.643820 CGGTGAAACGTTAGATCGGC 59.356 55.000 0.00 0.00 38.12 5.54
1649 8099 7.706607 AGTTCAAAAAGTTCTTATGCTCCAAAC 59.293 33.333 0.00 0.00 0.00 2.93
1763 8320 1.666054 AAGGTCAAACGTTAACGGCA 58.334 45.000 29.81 9.35 44.95 5.69
1879 10084 5.226396 TCCAAGGAACAAAATATTTGCGTG 58.774 37.500 0.39 0.00 0.00 5.34
1971 10177 7.558161 TTCAGTTAGAGAATTGTGCATATGG 57.442 36.000 4.56 0.00 0.00 2.74
2162 10369 5.806366 AATTTGATTTACTTACGACCCCG 57.194 39.130 0.00 0.00 42.50 5.73
2163 10370 2.965572 TGATTTACTTACGACCCCGG 57.034 50.000 0.00 0.00 40.78 5.73
2164 10371 1.481772 TGATTTACTTACGACCCCGGG 59.518 52.381 15.80 15.80 40.78 5.73
2166 10373 1.347062 TTTACTTACGACCCCGGGTT 58.653 50.000 21.85 4.22 40.78 4.11
2168 10375 1.347062 TACTTACGACCCCGGGTTTT 58.653 50.000 21.85 2.23 40.78 2.43
2169 10376 0.473755 ACTTACGACCCCGGGTTTTT 59.526 50.000 21.85 3.16 40.78 1.94
2188 10395 2.540265 TTTTGCGGGGTTACTTACGA 57.460 45.000 0.00 0.00 0.00 3.43
2189 10396 1.794512 TTTGCGGGGTTACTTACGAC 58.205 50.000 0.00 0.00 0.00 4.34
2190 10397 0.037419 TTGCGGGGTTACTTACGACC 60.037 55.000 0.00 0.00 35.14 4.79
2191 10398 0.899717 TGCGGGGTTACTTACGACCT 60.900 55.000 0.00 0.00 36.18 3.85
2192 10399 0.179127 GCGGGGTTACTTACGACCTC 60.179 60.000 0.00 0.00 36.18 3.85
2219 10426 1.286248 GTGATTGGGGAGGTACCACT 58.714 55.000 15.94 0.00 43.74 4.00
2220 10427 2.474112 GTGATTGGGGAGGTACCACTA 58.526 52.381 15.94 0.00 43.74 2.74
2221 10428 2.434702 GTGATTGGGGAGGTACCACTAG 59.565 54.545 15.94 0.00 43.74 2.57
2222 10429 2.045326 TGATTGGGGAGGTACCACTAGT 59.955 50.000 15.94 0.00 43.74 2.57
2223 10430 3.272818 TGATTGGGGAGGTACCACTAGTA 59.727 47.826 15.94 0.00 43.74 1.82
2224 10431 3.393426 TTGGGGAGGTACCACTAGTAG 57.607 52.381 15.94 0.00 43.74 2.57
2225 10432 2.291354 TGGGGAGGTACCACTAGTAGT 58.709 52.381 15.94 0.00 43.74 2.73
2226 10433 2.656432 TGGGGAGGTACCACTAGTAGTT 59.344 50.000 15.94 0.00 43.74 2.24
2227 10434 3.078000 TGGGGAGGTACCACTAGTAGTTT 59.922 47.826 15.94 0.00 43.74 2.66
2228 10435 3.703556 GGGGAGGTACCACTAGTAGTTTC 59.296 52.174 15.94 0.00 39.39 2.78
2229 10436 4.347607 GGGAGGTACCACTAGTAGTTTCA 58.652 47.826 15.94 0.00 41.20 2.69
2230 10437 4.401837 GGGAGGTACCACTAGTAGTTTCAG 59.598 50.000 15.94 0.00 41.20 3.02
2231 10438 4.401837 GGAGGTACCACTAGTAGTTTCAGG 59.598 50.000 15.94 1.35 38.79 3.86
2232 10439 5.008165 AGGTACCACTAGTAGTTTCAGGT 57.992 43.478 15.94 13.07 0.00 4.00
2233 10440 6.144845 AGGTACCACTAGTAGTTTCAGGTA 57.855 41.667 15.94 11.43 0.00 3.08
2234 10441 5.948758 AGGTACCACTAGTAGTTTCAGGTAC 59.051 44.000 25.71 25.71 40.49 3.34
2235 10442 6.201226 GTACCACTAGTAGTTTCAGGTACC 57.799 45.833 24.42 2.73 37.74 3.34
2236 10443 4.744237 ACCACTAGTAGTTTCAGGTACCA 58.256 43.478 15.94 0.00 0.00 3.25
2237 10444 4.525874 ACCACTAGTAGTTTCAGGTACCAC 59.474 45.833 15.94 3.01 0.00 4.16
2238 10445 4.081807 CCACTAGTAGTTTCAGGTACCACC 60.082 50.000 15.94 0.00 38.99 4.61
2239 10446 4.525487 CACTAGTAGTTTCAGGTACCACCA 59.475 45.833 15.94 0.00 41.95 4.17
2250 10457 5.496556 TCAGGTACCACCACTGAATTATTG 58.503 41.667 15.94 0.00 41.95 1.90
2254 10461 6.012333 AGGTACCACCACTGAATTATTGGTTA 60.012 38.462 15.94 0.00 40.08 2.85
2293 10500 4.427394 GCATCTAGCAGGTGGACG 57.573 61.111 0.00 0.00 44.79 4.79
2294 10501 1.227380 GCATCTAGCAGGTGGACGG 60.227 63.158 0.00 0.00 44.79 4.79
2306 10513 2.838202 AGGTGGACGGACATAGAACATT 59.162 45.455 0.00 0.00 0.00 2.71
2316 10523 5.230306 CGGACATAGAACATTCTCTCGAAAC 59.770 44.000 0.00 0.00 38.70 2.78
2329 10536 6.145338 TCTCTCGAAACTATTAGCCGAATT 57.855 37.500 0.00 0.00 0.00 2.17
2346 10554 8.687824 AGCCGAATTATTTGACTTACAATTTG 57.312 30.769 0.00 0.00 38.36 2.32
2366 10574 6.859420 TTTGTACTACCCTTTTACGGTTTC 57.141 37.500 0.00 0.00 34.66 2.78
2367 10575 5.543507 TGTACTACCCTTTTACGGTTTCA 57.456 39.130 0.00 0.00 34.66 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.135895 TCTTCCGTTCTTTCCTCCTGTTT 59.864 43.478 0.00 0.00 0.00 2.83
40 41 2.607750 TGCCTTCCTCGCCCTCTT 60.608 61.111 0.00 0.00 0.00 2.85
242 246 1.064134 GGCCATTGATCGCCGTTTC 59.936 57.895 0.00 0.00 34.94 2.78
253 258 0.250793 ACCATTGCATGTGGCCATTG 59.749 50.000 9.72 11.80 43.89 2.82
257 580 0.174162 GAGAACCATTGCATGTGGCC 59.826 55.000 16.28 0.00 43.89 5.36
396 1105 2.526888 TTGTGAGACGGAGGGAGTAT 57.473 50.000 0.00 0.00 0.00 2.12
410 1119 8.235226 TGTTTGTAAAAACGTCTTACATTGTGA 58.765 29.630 18.58 6.09 38.65 3.58
467 1177 6.660094 AGAATGAAGTAAACTACTCTCCGTCT 59.340 38.462 0.00 0.00 38.26 4.18
471 1181 5.517054 CGCAGAATGAAGTAAACTACTCTCC 59.483 44.000 0.00 0.00 39.69 3.71
492 1208 1.663379 CGTATCAGGTCCTCCACGCA 61.663 60.000 4.07 0.00 35.89 5.24
609 3664 4.219802 CACTAATAGCAGTACGTGATCCG 58.780 47.826 0.00 2.55 44.03 4.18
729 5194 1.743394 GTCGGGCAAACCATCCTTTAG 59.257 52.381 0.00 0.00 40.22 1.85
743 5208 2.181021 CGTAGTGACAGGTCGGGC 59.819 66.667 0.00 0.00 0.00 6.13
749 5214 0.530744 TTGCTAGGCGTAGTGACAGG 59.469 55.000 14.52 0.00 0.00 4.00
755 5220 5.017490 AGATATGGTATTGCTAGGCGTAGT 58.983 41.667 14.52 0.00 0.00 2.73
821 5293 3.403057 CGGCGTTCGTGTGTCTGG 61.403 66.667 0.00 0.00 0.00 3.86
832 5304 2.915137 ATGTTTTGGGCCGGCGTT 60.915 55.556 22.54 0.00 0.00 4.84
845 5336 6.588756 GTCAAATGATTCAGCATTGTGATGTT 59.411 34.615 0.00 0.00 38.42 2.71
847 5338 6.096695 TGTCAAATGATTCAGCATTGTGATG 58.903 36.000 0.00 0.00 38.42 3.07
900 5391 3.731136 CACCTCAACGTGGGTGTG 58.269 61.111 20.52 11.36 45.52 3.82
1021 5536 5.630661 AGTAGTATGATCATGGCGTAGAC 57.369 43.478 18.72 6.44 0.00 2.59
1025 5540 3.641436 TCCAAGTAGTATGATCATGGCGT 59.359 43.478 18.72 2.66 0.00 5.68
1374 5930 1.593196 TGCTTCCTGTTTGTCCTTCG 58.407 50.000 0.00 0.00 0.00 3.79
1416 5973 5.769484 TTACGACTTAGTGGATCCATCTC 57.231 43.478 19.62 5.08 0.00 2.75
1449 6016 5.422666 CATACATGCACGATAACCACAAT 57.577 39.130 0.00 0.00 0.00 2.71
1649 8099 6.420604 ACCATTCAAAATTCTTTAGTGCAACG 59.579 34.615 0.00 0.00 45.86 4.10
1763 8320 4.354087 AGAAGGTTCACCCCAGTTTTCTAT 59.646 41.667 0.00 0.00 36.42 1.98
1879 10084 6.878389 TGCAAATATTTTGAGGAAAATGACCC 59.122 34.615 0.00 0.00 41.09 4.46
1916 10121 6.760298 GGTAACCACCTTAAGCAGTTATCTAC 59.240 42.308 11.18 4.29 42.11 2.59
1971 10177 7.265647 TGATGTAGTAGCACAGAGATAAGTC 57.734 40.000 0.00 0.00 0.00 3.01
2147 10354 1.347062 AACCCGGGGTCGTAAGTAAA 58.653 50.000 27.92 0.00 33.12 2.01
2168 10375 2.547634 GTCGTAAGTAACCCCGCAAAAA 59.452 45.455 0.00 0.00 39.48 1.94
2169 10376 2.142319 GTCGTAAGTAACCCCGCAAAA 58.858 47.619 0.00 0.00 39.48 2.44
2170 10377 1.607767 GGTCGTAAGTAACCCCGCAAA 60.608 52.381 0.00 0.00 39.48 3.68
2171 10378 0.037419 GGTCGTAAGTAACCCCGCAA 60.037 55.000 0.00 0.00 39.48 4.85
2172 10379 0.899717 AGGTCGTAAGTAACCCCGCA 60.900 55.000 0.00 0.00 34.92 5.69
2173 10380 0.179127 GAGGTCGTAAGTAACCCCGC 60.179 60.000 0.00 0.00 34.92 6.13
2174 10381 0.099436 CGAGGTCGTAAGTAACCCCG 59.901 60.000 0.00 0.00 34.92 5.73
2186 10393 0.388134 AATCACCGTCAACGAGGTCG 60.388 55.000 3.71 0.00 43.02 4.79
2187 10394 1.068474 CAATCACCGTCAACGAGGTC 58.932 55.000 3.71 0.00 43.02 3.85
2188 10395 0.320421 CCAATCACCGTCAACGAGGT 60.320 55.000 3.71 0.00 43.02 3.85
2189 10396 1.019278 CCCAATCACCGTCAACGAGG 61.019 60.000 3.71 0.00 43.02 4.63
2190 10397 1.019278 CCCCAATCACCGTCAACGAG 61.019 60.000 3.71 0.00 43.02 4.18
2191 10398 1.004320 CCCCAATCACCGTCAACGA 60.004 57.895 3.71 0.00 43.02 3.85
2192 10399 1.004320 TCCCCAATCACCGTCAACG 60.004 57.895 0.00 0.00 39.44 4.10
2193 10400 0.676782 CCTCCCCAATCACCGTCAAC 60.677 60.000 0.00 0.00 0.00 3.18
2194 10401 1.131303 ACCTCCCCAATCACCGTCAA 61.131 55.000 0.00 0.00 0.00 3.18
2195 10402 0.252330 TACCTCCCCAATCACCGTCA 60.252 55.000 0.00 0.00 0.00 4.35
2196 10403 0.177373 GTACCTCCCCAATCACCGTC 59.823 60.000 0.00 0.00 0.00 4.79
2197 10404 1.269703 GGTACCTCCCCAATCACCGT 61.270 60.000 4.06 0.00 0.00 4.83
2198 10405 1.268992 TGGTACCTCCCCAATCACCG 61.269 60.000 14.36 0.00 34.77 4.94
2219 10426 4.525487 CAGTGGTGGTACCTGAAACTACTA 59.475 45.833 15.78 0.00 39.58 1.82
2220 10427 3.323979 CAGTGGTGGTACCTGAAACTACT 59.676 47.826 14.36 12.87 39.58 2.57
2221 10428 3.322828 TCAGTGGTGGTACCTGAAACTAC 59.677 47.826 14.36 10.72 39.58 2.73
2222 10429 3.578978 TCAGTGGTGGTACCTGAAACTA 58.421 45.455 14.36 0.00 39.58 2.24
2223 10430 2.404559 TCAGTGGTGGTACCTGAAACT 58.595 47.619 14.36 8.69 39.58 2.66
2224 10431 2.922740 TCAGTGGTGGTACCTGAAAC 57.077 50.000 14.36 2.17 39.58 2.78
2225 10432 4.447138 AATTCAGTGGTGGTACCTGAAA 57.553 40.909 14.36 0.28 39.58 2.69
2226 10433 5.772393 ATAATTCAGTGGTGGTACCTGAA 57.228 39.130 14.36 14.15 39.58 3.02
2227 10434 5.496556 CAATAATTCAGTGGTGGTACCTGA 58.503 41.667 14.36 4.99 39.58 3.86
2228 10435 4.640201 CCAATAATTCAGTGGTGGTACCTG 59.360 45.833 14.36 2.29 39.58 4.00
2229 10436 4.855340 CCAATAATTCAGTGGTGGTACCT 58.145 43.478 14.36 0.00 39.58 3.08
2238 10445 8.630037 GGGAAATAGGTAACCAATAATTCAGTG 58.370 37.037 0.00 0.00 37.17 3.66
2239 10446 8.566109 AGGGAAATAGGTAACCAATAATTCAGT 58.434 33.333 0.00 0.00 37.17 3.41
2250 10457 5.132144 TCTTGGATGAGGGAAATAGGTAACC 59.868 44.000 0.00 0.00 37.17 2.85
2286 10493 2.981859 ATGTTCTATGTCCGTCCACC 57.018 50.000 0.00 0.00 0.00 4.61
2306 10513 5.769484 ATTCGGCTAATAGTTTCGAGAGA 57.231 39.130 0.00 0.00 39.20 3.10
2346 10554 6.859420 TTTGAAACCGTAAAAGGGTAGTAC 57.141 37.500 0.00 0.00 34.89 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.