Multiple sequence alignment - TraesCS3D01G467700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G467700 chr3D 100.000 3257 0 0 1 3257 570392685 570395941 0.000000e+00 6015.0
1 TraesCS3D01G467700 chr3D 84.336 1347 166 29 978 2318 570379564 570380871 0.000000e+00 1277.0
2 TraesCS3D01G467700 chr3D 84.457 1216 146 24 992 2199 570281032 570282212 0.000000e+00 1158.0
3 TraesCS3D01G467700 chr3D 83.755 1225 149 29 984 2196 570328415 570329601 0.000000e+00 1114.0
4 TraesCS3D01G467700 chr3D 83.677 1213 159 19 1094 2298 570311115 570312296 0.000000e+00 1107.0
5 TraesCS3D01G467700 chr3D 82.227 1266 186 29 994 2244 520191927 520190686 0.000000e+00 1055.0
6 TraesCS3D01G467700 chr3D 82.559 1227 174 20 987 2199 570496399 570495199 0.000000e+00 1044.0
7 TraesCS3D01G467700 chr3D 83.972 574 78 9 980 1549 570401363 570400800 3.700000e-149 538.0
8 TraesCS3D01G467700 chr3D 80.514 662 115 9 1608 2259 570400565 570399908 2.260000e-136 496.0
9 TraesCS3D01G467700 chr3D 80.235 511 51 26 2770 3236 91033318 91033822 4.030000e-89 339.0
10 TraesCS3D01G467700 chr3D 77.403 385 55 15 2769 3126 24207846 24208225 1.980000e-47 200.0
11 TraesCS3D01G467700 chr3D 83.750 80 8 2 785 859 570401530 570401451 1.620000e-08 71.3
12 TraesCS3D01G467700 chr3B 92.677 2144 106 22 643 2766 757733811 757735923 0.000000e+00 3042.0
13 TraesCS3D01G467700 chr3B 82.921 1335 182 33 992 2318 757708078 757709374 0.000000e+00 1160.0
14 TraesCS3D01G467700 chr3B 83.361 1220 186 15 1048 2257 757739782 757738570 0.000000e+00 1112.0
15 TraesCS3D01G467700 chr3B 82.514 1281 194 22 992 2260 757773437 757772175 0.000000e+00 1098.0
16 TraesCS3D01G467700 chr3B 82.306 1266 185 29 994 2244 685039270 685038029 0.000000e+00 1061.0
17 TraesCS3D01G467700 chr3B 87.500 80 3 3 786 859 757739977 757739899 5.790000e-13 86.1
18 TraesCS3D01G467700 chr3B 94.737 38 1 1 2650 2687 602940006 602940042 1.260000e-04 58.4
19 TraesCS3D01G467700 chr3A 93.698 1809 74 19 629 2426 703269923 703271702 0.000000e+00 2673.0
20 TraesCS3D01G467700 chr3A 85.017 1208 141 22 997 2199 703203822 703204994 0.000000e+00 1192.0
21 TraesCS3D01G467700 chr3A 83.977 1217 149 28 992 2199 703170779 703171958 0.000000e+00 1125.0
22 TraesCS3D01G467700 chr3A 82.686 1288 201 14 980 2259 703304315 703303042 0.000000e+00 1123.0
23 TraesCS3D01G467700 chr3A 82.072 1216 184 24 1043 2244 655637039 655635844 0.000000e+00 1007.0
24 TraesCS3D01G467700 chr3A 90.968 310 26 2 2461 2769 703300172 703300480 1.810000e-112 416.0
25 TraesCS3D01G467700 chr3A 93.590 234 9 5 3027 3257 433996976 433996746 8.650000e-91 344.0
26 TraesCS3D01G467700 chr5D 83.301 521 50 16 2769 3257 305779650 305780165 2.310000e-121 446.0
27 TraesCS3D01G467700 chr5D 92.887 239 13 4 3022 3257 447099036 447098799 8.650000e-91 344.0
28 TraesCS3D01G467700 chr5D 91.983 237 13 4 3022 3257 309407709 309407478 8.710000e-86 327.0
29 TraesCS3D01G467700 chr5D 80.938 341 49 12 178 513 263353240 263352911 4.170000e-64 255.0
30 TraesCS3D01G467700 chr5D 87.342 79 7 2 69 144 529430395 529430317 1.610000e-13 87.9
31 TraesCS3D01G467700 chr2D 81.836 512 61 16 2771 3257 539870068 539869564 5.060000e-108 401.0
32 TraesCS3D01G467700 chr2D 85.312 320 40 7 197 513 490678753 490678438 1.130000e-84 324.0
33 TraesCS3D01G467700 chr2D 84.530 181 26 2 2769 2948 509631565 509631744 9.290000e-41 178.0
34 TraesCS3D01G467700 chr2D 83.978 181 26 3 2770 2948 275227979 275227800 1.550000e-38 171.0
35 TraesCS3D01G467700 chr2D 82.682 179 26 4 2769 2944 72311389 72311565 1.560000e-33 154.0
36 TraesCS3D01G467700 chr2D 86.364 88 9 2 60 144 572800506 572800593 3.460000e-15 93.5
37 TraesCS3D01G467700 chr1D 92.827 237 15 2 3022 3257 28187853 28187618 3.110000e-90 342.0
38 TraesCS3D01G467700 chr1D 92.083 240 17 2 3019 3257 458763758 458763996 1.450000e-88 337.0
39 TraesCS3D01G467700 chr1D 75.921 407 48 23 2767 3129 62227514 62227114 2.600000e-36 163.0
40 TraesCS3D01G467700 chr1D 83.486 109 15 3 2646 2752 18836631 18836738 7.440000e-17 99.0
41 TraesCS3D01G467700 chr6D 92.050 239 18 1 3019 3257 466275758 466275995 5.210000e-88 335.0
42 TraesCS3D01G467700 chr6D 85.405 185 23 3 2767 2948 200610999 200610816 4.290000e-44 189.0
43 TraesCS3D01G467700 chr6D 83.425 181 26 4 2770 2948 29957012 29956834 7.230000e-37 165.0
44 TraesCS3D01G467700 chr6D 84.884 86 10 2 69 151 130657880 130657795 2.080000e-12 84.2
45 TraesCS3D01G467700 chr1A 91.949 236 18 1 3022 3257 571572549 571572783 2.420000e-86 329.0
46 TraesCS3D01G467700 chr1A 87.013 77 8 2 2651 2726 69754947 69754872 5.790000e-13 86.1
47 TraesCS3D01G467700 chr1A 82.979 94 13 2 61 151 380095573 380095666 7.490000e-12 82.4
48 TraesCS3D01G467700 chr7A 86.093 302 35 7 214 512 63577892 63578189 5.240000e-83 318.0
49 TraesCS3D01G467700 chr7A 86.076 79 8 2 69 144 730554205 730554283 7.490000e-12 82.4
50 TraesCS3D01G467700 chr7D 79.035 539 53 27 2770 3257 522979130 522979659 6.780000e-82 315.0
51 TraesCS3D01G467700 chr7D 84.106 302 41 7 215 513 14932436 14932733 5.320000e-73 285.0
52 TraesCS3D01G467700 chr7D 83.125 160 24 1 1476 1632 565060542 565060383 3.390000e-30 143.0
53 TraesCS3D01G467700 chr7D 87.719 114 12 2 2648 2760 635363110 635363222 7.330000e-27 132.0
54 TraesCS3D01G467700 chr7D 92.857 42 3 0 602 643 2506779 2506738 9.760000e-06 62.1
55 TraesCS3D01G467700 chr2A 83.526 346 42 10 172 512 721444482 721444147 3.160000e-80 309.0
56 TraesCS3D01G467700 chr2A 86.364 88 9 2 60 144 712060421 712060508 3.460000e-15 93.5
57 TraesCS3D01G467700 chr5A 82.808 349 46 10 170 513 569077316 569076977 1.900000e-77 300.0
58 TraesCS3D01G467700 chr5A 79.300 343 46 12 2763 3086 449013609 449013945 1.970000e-52 217.0
59 TraesCS3D01G467700 chr5B 83.056 301 47 4 213 513 661525996 661526292 1.490000e-68 270.0
60 TraesCS3D01G467700 chr4B 81.818 330 42 15 192 513 126602181 126602500 8.960000e-66 261.0
61 TraesCS3D01G467700 chr4B 82.292 192 29 3 2762 2949 638956891 638956701 9.350000e-36 161.0
62 TraesCS3D01G467700 chr1B 82.019 317 43 10 170 481 634603993 634603686 1.160000e-64 257.0
63 TraesCS3D01G467700 chr1B 85.417 96 9 3 60 151 297293764 297293670 9.620000e-16 95.3
64 TraesCS3D01G467700 chrUn 78.517 391 46 25 2767 3126 48199993 48200376 4.230000e-54 222.0
65 TraesCS3D01G467700 chrUn 78.517 391 46 25 2767 3126 429286180 429286563 4.230000e-54 222.0
66 TraesCS3D01G467700 chrUn 78.063 351 45 18 2806 3129 384028469 384028124 3.320000e-45 193.0
67 TraesCS3D01G467700 chr2B 84.066 182 26 2 2769 2948 109021712 109021892 4.320000e-39 172.0
68 TraesCS3D01G467700 chr2B 88.679 53 4 2 2650 2701 31871354 31871303 2.710000e-06 63.9
69 TraesCS3D01G467700 chr7B 85.714 119 17 0 2649 2767 705722566 705722448 3.410000e-25 126.0
70 TraesCS3D01G467700 chr6B 89.873 79 5 2 69 144 614434356 614434278 7.440000e-17 99.0
71 TraesCS3D01G467700 chr4A 84.314 102 11 3 54 151 140303280 140303380 9.620000e-16 95.3
72 TraesCS3D01G467700 chr4A 94.737 38 2 0 2649 2686 733841967 733841930 3.510000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G467700 chr3D 570392685 570395941 3256 False 6015.000000 6015 100.000000 1 3257 1 chr3D.!!$F7 3256
1 TraesCS3D01G467700 chr3D 570379564 570380871 1307 False 1277.000000 1277 84.336000 978 2318 1 chr3D.!!$F6 1340
2 TraesCS3D01G467700 chr3D 570281032 570282212 1180 False 1158.000000 1158 84.457000 992 2199 1 chr3D.!!$F3 1207
3 TraesCS3D01G467700 chr3D 570328415 570329601 1186 False 1114.000000 1114 83.755000 984 2196 1 chr3D.!!$F5 1212
4 TraesCS3D01G467700 chr3D 570311115 570312296 1181 False 1107.000000 1107 83.677000 1094 2298 1 chr3D.!!$F4 1204
5 TraesCS3D01G467700 chr3D 520190686 520191927 1241 True 1055.000000 1055 82.227000 994 2244 1 chr3D.!!$R1 1250
6 TraesCS3D01G467700 chr3D 570495199 570496399 1200 True 1044.000000 1044 82.559000 987 2199 1 chr3D.!!$R2 1212
7 TraesCS3D01G467700 chr3D 570399908 570401530 1622 True 368.433333 538 82.745333 785 2259 3 chr3D.!!$R3 1474
8 TraesCS3D01G467700 chr3D 91033318 91033822 504 False 339.000000 339 80.235000 2770 3236 1 chr3D.!!$F2 466
9 TraesCS3D01G467700 chr3B 757733811 757735923 2112 False 3042.000000 3042 92.677000 643 2766 1 chr3B.!!$F3 2123
10 TraesCS3D01G467700 chr3B 757708078 757709374 1296 False 1160.000000 1160 82.921000 992 2318 1 chr3B.!!$F2 1326
11 TraesCS3D01G467700 chr3B 757772175 757773437 1262 True 1098.000000 1098 82.514000 992 2260 1 chr3B.!!$R2 1268
12 TraesCS3D01G467700 chr3B 685038029 685039270 1241 True 1061.000000 1061 82.306000 994 2244 1 chr3B.!!$R1 1250
13 TraesCS3D01G467700 chr3B 757738570 757739977 1407 True 599.050000 1112 85.430500 786 2257 2 chr3B.!!$R3 1471
14 TraesCS3D01G467700 chr3A 703269923 703271702 1779 False 2673.000000 2673 93.698000 629 2426 1 chr3A.!!$F3 1797
15 TraesCS3D01G467700 chr3A 703203822 703204994 1172 False 1192.000000 1192 85.017000 997 2199 1 chr3A.!!$F2 1202
16 TraesCS3D01G467700 chr3A 703170779 703171958 1179 False 1125.000000 1125 83.977000 992 2199 1 chr3A.!!$F1 1207
17 TraesCS3D01G467700 chr3A 703303042 703304315 1273 True 1123.000000 1123 82.686000 980 2259 1 chr3A.!!$R3 1279
18 TraesCS3D01G467700 chr3A 655635844 655637039 1195 True 1007.000000 1007 82.072000 1043 2244 1 chr3A.!!$R2 1201
19 TraesCS3D01G467700 chr5D 305779650 305780165 515 False 446.000000 446 83.301000 2769 3257 1 chr5D.!!$F1 488
20 TraesCS3D01G467700 chr2D 539869564 539870068 504 True 401.000000 401 81.836000 2771 3257 1 chr2D.!!$R3 486
21 TraesCS3D01G467700 chr7D 522979130 522979659 529 False 315.000000 315 79.035000 2770 3257 1 chr7D.!!$F2 487

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
186 187 0.040058 TAGCTCCCGGGTGAACAGTA 59.960 55.0 26.61 0.0 0.00 2.74 F
259 260 0.102663 TGGTCGTGTTAGTGTCGCAA 59.897 50.0 0.00 0.0 0.00 4.85 F
261 262 0.161024 GTCGTGTTAGTGTCGCAAGC 59.839 55.0 0.00 0.0 37.18 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1365 1403 1.593209 GGCGACAAACCTCGTGTGA 60.593 57.895 0.0 0.0 35.99 3.58 R
2203 2436 2.497675 ACTGCATATAGTAGGGCATCGG 59.502 50.000 0.0 0.0 35.45 4.18 R
2301 2539 7.819500 TGGGTATGTAGTAGTCCAGTAATACT 58.180 38.462 0.0 0.0 34.29 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.442056 AACAAGCCGAGTCTGGAGT 58.558 52.632 5.36 0.00 0.00 3.85
19 20 0.318762 AACAAGCCGAGTCTGGAGTC 59.681 55.000 5.36 0.00 0.00 3.36
20 21 0.540830 ACAAGCCGAGTCTGGAGTCT 60.541 55.000 5.36 0.00 0.00 3.24
21 22 0.605589 CAAGCCGAGTCTGGAGTCTT 59.394 55.000 5.36 0.00 0.00 3.01
22 23 0.605589 AAGCCGAGTCTGGAGTCTTG 59.394 55.000 5.36 0.00 0.00 3.02
23 24 0.251386 AGCCGAGTCTGGAGTCTTGA 60.251 55.000 5.36 0.00 0.00 3.02
24 25 0.172352 GCCGAGTCTGGAGTCTTGAG 59.828 60.000 5.36 0.00 0.00 3.02
25 26 1.540267 CCGAGTCTGGAGTCTTGAGT 58.460 55.000 4.26 0.00 0.00 3.41
26 27 1.470890 CCGAGTCTGGAGTCTTGAGTC 59.529 57.143 4.26 9.30 0.00 3.36
27 28 2.432444 CGAGTCTGGAGTCTTGAGTCT 58.568 52.381 14.27 3.05 0.00 3.24
28 29 2.418628 CGAGTCTGGAGTCTTGAGTCTC 59.581 54.545 14.27 0.00 0.00 3.36
29 30 2.418628 GAGTCTGGAGTCTTGAGTCTCG 59.581 54.545 5.57 0.00 32.28 4.04
30 31 2.039216 AGTCTGGAGTCTTGAGTCTCGA 59.961 50.000 5.57 0.00 32.28 4.04
31 32 3.013921 GTCTGGAGTCTTGAGTCTCGAT 58.986 50.000 5.57 0.00 32.28 3.59
32 33 3.064820 GTCTGGAGTCTTGAGTCTCGATC 59.935 52.174 5.57 0.00 32.28 3.69
33 34 3.054728 TCTGGAGTCTTGAGTCTCGATCT 60.055 47.826 5.57 0.00 32.28 2.75
34 35 3.013219 TGGAGTCTTGAGTCTCGATCTG 58.987 50.000 5.57 0.00 32.28 2.90
35 36 2.357637 GGAGTCTTGAGTCTCGATCTGG 59.642 54.545 5.57 0.00 32.28 3.86
36 37 3.013921 GAGTCTTGAGTCTCGATCTGGT 58.986 50.000 0.00 0.00 0.00 4.00
37 38 3.426615 AGTCTTGAGTCTCGATCTGGTT 58.573 45.455 0.00 0.00 0.00 3.67
38 39 3.192422 AGTCTTGAGTCTCGATCTGGTTG 59.808 47.826 0.00 0.00 0.00 3.77
39 40 3.191581 GTCTTGAGTCTCGATCTGGTTGA 59.808 47.826 0.00 0.00 0.00 3.18
40 41 4.019858 TCTTGAGTCTCGATCTGGTTGAT 58.980 43.478 0.00 0.00 38.27 2.57
41 42 4.464244 TCTTGAGTCTCGATCTGGTTGATT 59.536 41.667 0.00 0.00 35.14 2.57
42 43 4.115401 TGAGTCTCGATCTGGTTGATTG 57.885 45.455 0.00 0.00 37.80 2.67
43 44 3.763897 TGAGTCTCGATCTGGTTGATTGA 59.236 43.478 0.00 0.00 41.87 2.57
44 45 4.403752 TGAGTCTCGATCTGGTTGATTGAT 59.596 41.667 0.00 0.00 42.82 2.57
45 46 4.691175 AGTCTCGATCTGGTTGATTGATG 58.309 43.478 0.00 0.00 42.82 3.07
46 47 3.806521 GTCTCGATCTGGTTGATTGATGG 59.193 47.826 0.00 0.00 42.82 3.51
47 48 2.547211 CTCGATCTGGTTGATTGATGGC 59.453 50.000 0.00 0.00 42.82 4.40
48 49 2.171237 TCGATCTGGTTGATTGATGGCT 59.829 45.455 0.00 0.00 39.88 4.75
49 50 2.947652 CGATCTGGTTGATTGATGGCTT 59.052 45.455 0.00 0.00 38.55 4.35
50 51 3.242969 CGATCTGGTTGATTGATGGCTTG 60.243 47.826 0.00 0.00 38.55 4.01
51 52 3.438216 TCTGGTTGATTGATGGCTTGA 57.562 42.857 0.00 0.00 0.00 3.02
52 53 3.765381 TCTGGTTGATTGATGGCTTGAA 58.235 40.909 0.00 0.00 0.00 2.69
53 54 3.507233 TCTGGTTGATTGATGGCTTGAAC 59.493 43.478 0.00 0.00 0.00 3.18
54 55 3.499338 TGGTTGATTGATGGCTTGAACT 58.501 40.909 0.00 0.00 0.00 3.01
55 56 3.256383 TGGTTGATTGATGGCTTGAACTG 59.744 43.478 0.00 0.00 0.00 3.16
56 57 3.248266 GTTGATTGATGGCTTGAACTGC 58.752 45.455 0.00 0.00 0.00 4.40
62 63 3.574780 GGCTTGAACTGCCCGTAC 58.425 61.111 0.00 0.00 44.32 3.67
63 64 1.003718 GGCTTGAACTGCCCGTACT 60.004 57.895 0.00 0.00 44.32 2.73
64 65 1.298859 GGCTTGAACTGCCCGTACTG 61.299 60.000 0.00 0.00 44.32 2.74
65 66 1.298859 GCTTGAACTGCCCGTACTGG 61.299 60.000 0.00 0.00 37.55 4.00
66 67 0.320374 CTTGAACTGCCCGTACTGGA 59.680 55.000 7.62 0.00 42.00 3.86
67 68 0.981183 TTGAACTGCCCGTACTGGAT 59.019 50.000 7.62 0.00 42.00 3.41
68 69 1.855295 TGAACTGCCCGTACTGGATA 58.145 50.000 7.62 0.00 42.00 2.59
69 70 1.754803 TGAACTGCCCGTACTGGATAG 59.245 52.381 7.62 6.95 42.00 2.08
70 71 1.755380 GAACTGCCCGTACTGGATAGT 59.245 52.381 7.62 7.57 42.00 2.12
71 72 2.742428 ACTGCCCGTACTGGATAGTA 57.258 50.000 7.62 0.00 42.00 1.82
72 73 3.240310 ACTGCCCGTACTGGATAGTAT 57.760 47.619 7.62 0.00 41.22 2.12
73 74 3.155501 ACTGCCCGTACTGGATAGTATC 58.844 50.000 7.62 1.11 41.22 2.24
74 75 3.154710 CTGCCCGTACTGGATAGTATCA 58.845 50.000 7.62 0.00 41.22 2.15
75 76 3.764434 CTGCCCGTACTGGATAGTATCAT 59.236 47.826 7.62 0.00 41.22 2.45
76 77 4.925836 TGCCCGTACTGGATAGTATCATA 58.074 43.478 7.62 0.00 41.22 2.15
77 78 5.326900 TGCCCGTACTGGATAGTATCATAA 58.673 41.667 7.62 0.00 41.22 1.90
78 79 5.776208 TGCCCGTACTGGATAGTATCATAAA 59.224 40.000 7.62 0.00 41.22 1.40
79 80 6.098017 GCCCGTACTGGATAGTATCATAAAC 58.902 44.000 7.62 4.20 41.22 2.01
80 81 6.071503 GCCCGTACTGGATAGTATCATAAACT 60.072 42.308 7.62 0.00 41.22 2.66
81 82 7.121759 GCCCGTACTGGATAGTATCATAAACTA 59.878 40.741 7.62 0.00 41.22 2.24
82 83 9.186837 CCCGTACTGGATAGTATCATAAACTAT 57.813 37.037 12.19 0.00 41.22 2.12
106 107 7.681939 TCATGCGTATGATACTAGTGTATGA 57.318 36.000 12.50 4.83 39.29 2.15
107 108 8.281212 TCATGCGTATGATACTAGTGTATGAT 57.719 34.615 12.50 0.00 39.29 2.45
108 109 9.391006 TCATGCGTATGATACTAGTGTATGATA 57.609 33.333 12.50 0.00 39.29 2.15
109 110 9.439537 CATGCGTATGATACTAGTGTATGATAC 57.560 37.037 7.86 5.51 44.89 2.24
110 111 8.788325 TGCGTATGATACTAGTGTATGATACT 57.212 34.615 17.09 0.00 45.51 2.12
111 112 8.665685 TGCGTATGATACTAGTGTATGATACTG 58.334 37.037 17.09 13.36 45.51 2.74
112 113 8.666573 GCGTATGATACTAGTGTATGATACTGT 58.333 37.037 17.09 1.30 45.51 3.55
117 118 8.989980 TGATACTAGTGTATGATACTGTCTTCG 58.010 37.037 5.39 0.00 39.29 3.79
118 119 8.905660 ATACTAGTGTATGATACTGTCTTCGT 57.094 34.615 5.39 4.45 37.92 3.85
119 120 9.993454 ATACTAGTGTATGATACTGTCTTCGTA 57.007 33.333 5.39 6.02 37.92 3.43
120 121 8.728337 ACTAGTGTATGATACTGTCTTCGTAA 57.272 34.615 4.03 0.00 0.00 3.18
121 122 9.339850 ACTAGTGTATGATACTGTCTTCGTAAT 57.660 33.333 4.03 0.00 0.00 1.89
122 123 9.600646 CTAGTGTATGATACTGTCTTCGTAATG 57.399 37.037 4.03 0.00 0.00 1.90
123 124 6.918569 AGTGTATGATACTGTCTTCGTAATGC 59.081 38.462 4.03 0.00 0.00 3.56
124 125 6.695713 GTGTATGATACTGTCTTCGTAATGCA 59.304 38.462 4.03 0.00 0.00 3.96
125 126 7.382488 GTGTATGATACTGTCTTCGTAATGCAT 59.618 37.037 4.03 0.00 0.00 3.96
126 127 8.573035 TGTATGATACTGTCTTCGTAATGCATA 58.427 33.333 0.00 0.00 0.00 3.14
127 128 9.066939 GTATGATACTGTCTTCGTAATGCATAG 57.933 37.037 0.00 0.00 0.00 2.23
128 129 7.039313 TGATACTGTCTTCGTAATGCATAGT 57.961 36.000 0.00 0.00 0.00 2.12
129 130 8.161699 TGATACTGTCTTCGTAATGCATAGTA 57.838 34.615 0.00 0.81 0.00 1.82
130 131 8.793592 TGATACTGTCTTCGTAATGCATAGTAT 58.206 33.333 11.08 11.08 33.08 2.12
131 132 9.279904 GATACTGTCTTCGTAATGCATAGTATC 57.720 37.037 17.94 17.94 38.00 2.24
132 133 7.039313 ACTGTCTTCGTAATGCATAGTATCA 57.961 36.000 0.00 0.00 0.00 2.15
133 134 7.661968 ACTGTCTTCGTAATGCATAGTATCAT 58.338 34.615 0.00 0.00 0.00 2.45
134 135 8.793592 ACTGTCTTCGTAATGCATAGTATCATA 58.206 33.333 0.00 0.00 0.00 2.15
135 136 9.283420 CTGTCTTCGTAATGCATAGTATCATAG 57.717 37.037 0.00 0.00 0.00 2.23
136 137 9.010029 TGTCTTCGTAATGCATAGTATCATAGA 57.990 33.333 0.00 0.00 0.00 1.98
163 164 1.760613 TGTTAGATAACAGGAGGGGCG 59.239 52.381 1.30 0.00 40.93 6.13
164 165 1.761198 GTTAGATAACAGGAGGGGCGT 59.239 52.381 0.00 0.00 36.25 5.68
165 166 2.169978 GTTAGATAACAGGAGGGGCGTT 59.830 50.000 0.00 0.00 36.25 4.84
166 167 1.286248 AGATAACAGGAGGGGCGTTT 58.714 50.000 0.00 0.00 0.00 3.60
167 168 1.633945 AGATAACAGGAGGGGCGTTTT 59.366 47.619 0.00 0.00 0.00 2.43
168 169 2.841881 AGATAACAGGAGGGGCGTTTTA 59.158 45.455 0.00 0.00 0.00 1.52
169 170 2.773993 TAACAGGAGGGGCGTTTTAG 57.226 50.000 0.00 0.00 0.00 1.85
170 171 0.608308 AACAGGAGGGGCGTTTTAGC 60.608 55.000 0.00 0.00 0.00 3.09
171 172 1.299976 CAGGAGGGGCGTTTTAGCT 59.700 57.895 0.00 0.00 37.29 3.32
172 173 0.744771 CAGGAGGGGCGTTTTAGCTC 60.745 60.000 0.00 0.00 37.29 4.09
176 177 2.822701 GGGCGTTTTAGCTCCCGG 60.823 66.667 0.00 0.00 37.29 5.73
177 178 2.822701 GGCGTTTTAGCTCCCGGG 60.823 66.667 16.85 16.85 37.29 5.73
178 179 2.046604 GCGTTTTAGCTCCCGGGT 60.047 61.111 22.86 3.24 0.00 5.28
179 180 2.396157 GCGTTTTAGCTCCCGGGTG 61.396 63.158 22.86 20.53 0.00 4.61
180 181 1.294138 CGTTTTAGCTCCCGGGTGA 59.706 57.895 26.61 3.85 0.00 4.02
181 182 0.320946 CGTTTTAGCTCCCGGGTGAA 60.321 55.000 26.61 9.63 0.00 3.18
182 183 1.162698 GTTTTAGCTCCCGGGTGAAC 58.837 55.000 26.61 16.51 0.00 3.18
183 184 0.766131 TTTTAGCTCCCGGGTGAACA 59.234 50.000 26.61 6.90 0.00 3.18
184 185 0.323629 TTTAGCTCCCGGGTGAACAG 59.676 55.000 26.61 14.30 0.00 3.16
185 186 0.834687 TTAGCTCCCGGGTGAACAGT 60.835 55.000 26.61 6.86 0.00 3.55
186 187 0.040058 TAGCTCCCGGGTGAACAGTA 59.960 55.000 26.61 0.00 0.00 2.74
187 188 0.834687 AGCTCCCGGGTGAACAGTAA 60.835 55.000 26.61 0.00 0.00 2.24
188 189 0.672711 GCTCCCGGGTGAACAGTAAC 60.673 60.000 26.61 1.70 0.00 2.50
189 190 0.389426 CTCCCGGGTGAACAGTAACG 60.389 60.000 22.86 0.00 0.00 3.18
190 191 2.030958 CCCGGGTGAACAGTAACGC 61.031 63.158 14.18 0.00 0.00 4.84
191 192 1.301087 CCGGGTGAACAGTAACGCA 60.301 57.895 0.00 0.00 0.00 5.24
192 193 0.881159 CCGGGTGAACAGTAACGCAA 60.881 55.000 0.00 0.00 0.00 4.85
193 194 0.938713 CGGGTGAACAGTAACGCAAA 59.061 50.000 4.76 0.00 0.00 3.68
194 195 1.331138 CGGGTGAACAGTAACGCAAAA 59.669 47.619 4.76 0.00 0.00 2.44
195 196 2.031508 CGGGTGAACAGTAACGCAAAAT 60.032 45.455 4.76 0.00 0.00 1.82
196 197 3.186817 CGGGTGAACAGTAACGCAAAATA 59.813 43.478 4.76 0.00 0.00 1.40
197 198 4.319622 CGGGTGAACAGTAACGCAAAATAA 60.320 41.667 4.76 0.00 0.00 1.40
198 199 5.521544 GGGTGAACAGTAACGCAAAATAAA 58.478 37.500 0.00 0.00 0.00 1.40
199 200 5.978322 GGGTGAACAGTAACGCAAAATAAAA 59.022 36.000 0.00 0.00 0.00 1.52
200 201 6.643360 GGGTGAACAGTAACGCAAAATAAAAT 59.357 34.615 0.00 0.00 0.00 1.82
201 202 7.808856 GGGTGAACAGTAACGCAAAATAAAATA 59.191 33.333 0.00 0.00 0.00 1.40
202 203 9.349145 GGTGAACAGTAACGCAAAATAAAATAT 57.651 29.630 0.00 0.00 0.00 1.28
248 249 3.267908 TTTTTGTGGGTGGTCGTGT 57.732 47.368 0.00 0.00 0.00 4.49
249 250 1.546961 TTTTTGTGGGTGGTCGTGTT 58.453 45.000 0.00 0.00 0.00 3.32
250 251 2.414994 TTTTGTGGGTGGTCGTGTTA 57.585 45.000 0.00 0.00 0.00 2.41
251 252 1.956297 TTTGTGGGTGGTCGTGTTAG 58.044 50.000 0.00 0.00 0.00 2.34
252 253 0.831966 TTGTGGGTGGTCGTGTTAGT 59.168 50.000 0.00 0.00 0.00 2.24
253 254 0.105224 TGTGGGTGGTCGTGTTAGTG 59.895 55.000 0.00 0.00 0.00 2.74
254 255 0.105408 GTGGGTGGTCGTGTTAGTGT 59.895 55.000 0.00 0.00 0.00 3.55
255 256 0.390124 TGGGTGGTCGTGTTAGTGTC 59.610 55.000 0.00 0.00 0.00 3.67
256 257 0.665369 GGGTGGTCGTGTTAGTGTCG 60.665 60.000 0.00 0.00 0.00 4.35
257 258 1.280206 GGTGGTCGTGTTAGTGTCGC 61.280 60.000 0.00 0.00 0.00 5.19
258 259 0.595567 GTGGTCGTGTTAGTGTCGCA 60.596 55.000 0.00 0.00 0.00 5.10
259 260 0.102663 TGGTCGTGTTAGTGTCGCAA 59.897 50.000 0.00 0.00 0.00 4.85
260 261 0.782384 GGTCGTGTTAGTGTCGCAAG 59.218 55.000 0.00 0.00 0.00 4.01
261 262 0.161024 GTCGTGTTAGTGTCGCAAGC 59.839 55.000 0.00 0.00 37.18 4.01
262 263 0.249114 TCGTGTTAGTGTCGCAAGCA 60.249 50.000 0.00 0.00 37.18 3.91
263 264 0.790207 CGTGTTAGTGTCGCAAGCAT 59.210 50.000 0.00 0.00 37.18 3.79
264 265 1.462378 CGTGTTAGTGTCGCAAGCATG 60.462 52.381 0.00 0.00 37.18 4.06
278 279 3.655486 CAAGCATGCCTGACAAATTTCA 58.345 40.909 15.66 0.00 0.00 2.69
279 280 4.250464 CAAGCATGCCTGACAAATTTCAT 58.750 39.130 15.66 0.00 0.00 2.57
280 281 3.857052 AGCATGCCTGACAAATTTCATG 58.143 40.909 15.66 9.71 35.65 3.07
281 282 3.259876 AGCATGCCTGACAAATTTCATGT 59.740 39.130 15.66 0.00 35.17 3.21
282 283 3.369756 GCATGCCTGACAAATTTCATGTG 59.630 43.478 6.36 0.00 35.17 3.21
283 284 4.811908 CATGCCTGACAAATTTCATGTGA 58.188 39.130 6.98 0.00 0.00 3.58
284 285 4.933505 TGCCTGACAAATTTCATGTGAA 57.066 36.364 0.00 0.00 0.00 3.18
285 286 5.273674 TGCCTGACAAATTTCATGTGAAA 57.726 34.783 10.29 10.29 46.60 2.69
297 298 5.710513 TTCATGTGAAATAAAGCAGCAGT 57.289 34.783 0.00 0.00 0.00 4.40
298 299 5.050644 TCATGTGAAATAAAGCAGCAGTG 57.949 39.130 0.00 0.00 0.00 3.66
299 300 4.520111 TCATGTGAAATAAAGCAGCAGTGT 59.480 37.500 0.00 0.00 0.00 3.55
300 301 4.916983 TGTGAAATAAAGCAGCAGTGTT 57.083 36.364 0.00 0.00 0.00 3.32
301 302 5.261209 TGTGAAATAAAGCAGCAGTGTTT 57.739 34.783 0.00 0.00 0.00 2.83
302 303 5.659463 TGTGAAATAAAGCAGCAGTGTTTT 58.341 33.333 0.00 0.00 40.00 2.43
303 304 5.519566 TGTGAAATAAAGCAGCAGTGTTTTG 59.480 36.000 0.00 0.00 37.62 2.44
304 305 5.519927 GTGAAATAAAGCAGCAGTGTTTTGT 59.480 36.000 0.00 0.00 37.62 2.83
305 306 5.748152 TGAAATAAAGCAGCAGTGTTTTGTC 59.252 36.000 0.00 0.00 37.62 3.18
306 307 4.916983 ATAAAGCAGCAGTGTTTTGTCA 57.083 36.364 0.00 0.00 37.62 3.58
307 308 2.857592 AAGCAGCAGTGTTTTGTCAG 57.142 45.000 0.00 0.00 0.00 3.51
308 309 1.755179 AGCAGCAGTGTTTTGTCAGT 58.245 45.000 0.00 0.00 0.00 3.41
309 310 1.402968 AGCAGCAGTGTTTTGTCAGTG 59.597 47.619 0.00 0.00 40.50 3.66
310 311 1.401552 GCAGCAGTGTTTTGTCAGTGA 59.598 47.619 5.82 0.00 40.11 3.41
311 312 2.159393 GCAGCAGTGTTTTGTCAGTGAA 60.159 45.455 0.00 0.00 40.11 3.18
312 313 3.673052 GCAGCAGTGTTTTGTCAGTGAAA 60.673 43.478 0.00 0.00 40.11 2.69
313 314 4.484236 CAGCAGTGTTTTGTCAGTGAAAA 58.516 39.130 0.00 0.00 40.11 2.29
314 315 4.922692 CAGCAGTGTTTTGTCAGTGAAAAA 59.077 37.500 4.25 4.25 40.11 1.94
315 316 5.061311 CAGCAGTGTTTTGTCAGTGAAAAAG 59.939 40.000 8.47 0.00 40.11 2.27
316 317 5.048083 AGCAGTGTTTTGTCAGTGAAAAAGA 60.048 36.000 8.47 7.24 40.11 2.52
317 318 5.060940 GCAGTGTTTTGTCAGTGAAAAAGAC 59.939 40.000 20.54 20.54 40.11 3.01
318 319 6.148948 CAGTGTTTTGTCAGTGAAAAAGACA 58.851 36.000 24.98 20.31 40.25 3.41
319 320 6.640499 CAGTGTTTTGTCAGTGAAAAAGACAA 59.360 34.615 24.98 12.88 46.90 3.18
325 326 7.593875 TTGTCAGTGAAAAAGACAAAATTGG 57.406 32.000 4.90 0.00 45.95 3.16
326 327 6.105333 TGTCAGTGAAAAAGACAAAATTGGG 58.895 36.000 0.00 0.00 39.15 4.12
327 328 5.523552 GTCAGTGAAAAAGACAAAATTGGGG 59.476 40.000 0.00 0.00 32.68 4.96
328 329 5.188751 TCAGTGAAAAAGACAAAATTGGGGT 59.811 36.000 0.00 0.00 0.00 4.95
329 330 5.294060 CAGTGAAAAAGACAAAATTGGGGTG 59.706 40.000 0.00 0.00 0.00 4.61
330 331 5.188751 AGTGAAAAAGACAAAATTGGGGTGA 59.811 36.000 0.00 0.00 0.00 4.02
331 332 5.293324 GTGAAAAAGACAAAATTGGGGTGAC 59.707 40.000 0.00 0.00 0.00 3.67
347 348 4.400529 GGTGACCTTTGGTGTTTGATTT 57.599 40.909 0.00 0.00 35.25 2.17
348 349 4.765273 GGTGACCTTTGGTGTTTGATTTT 58.235 39.130 0.00 0.00 35.25 1.82
349 350 5.182487 GGTGACCTTTGGTGTTTGATTTTT 58.818 37.500 0.00 0.00 35.25 1.94
373 374 7.665561 TTTTTCATAGGCCAAAATGCTTAAC 57.334 32.000 5.01 0.00 0.00 2.01
374 375 5.337578 TTCATAGGCCAAAATGCTTAACC 57.662 39.130 5.01 0.00 0.00 2.85
375 376 4.609301 TCATAGGCCAAAATGCTTAACCT 58.391 39.130 5.01 0.00 0.00 3.50
376 377 5.022787 TCATAGGCCAAAATGCTTAACCTT 58.977 37.500 5.01 0.00 0.00 3.50
377 378 3.961480 AGGCCAAAATGCTTAACCTTC 57.039 42.857 5.01 0.00 0.00 3.46
378 379 3.510459 AGGCCAAAATGCTTAACCTTCT 58.490 40.909 5.01 0.00 0.00 2.85
379 380 3.903714 AGGCCAAAATGCTTAACCTTCTT 59.096 39.130 5.01 0.00 0.00 2.52
380 381 3.996363 GGCCAAAATGCTTAACCTTCTTG 59.004 43.478 0.00 0.00 0.00 3.02
381 382 3.433274 GCCAAAATGCTTAACCTTCTTGC 59.567 43.478 0.00 0.00 0.00 4.01
382 383 3.996363 CCAAAATGCTTAACCTTCTTGCC 59.004 43.478 0.00 0.00 0.00 4.52
383 384 4.262592 CCAAAATGCTTAACCTTCTTGCCT 60.263 41.667 0.00 0.00 0.00 4.75
384 385 4.790765 AAATGCTTAACCTTCTTGCCTC 57.209 40.909 0.00 0.00 0.00 4.70
385 386 2.949177 TGCTTAACCTTCTTGCCTCA 57.051 45.000 0.00 0.00 0.00 3.86
386 387 3.222173 TGCTTAACCTTCTTGCCTCAA 57.778 42.857 0.00 0.00 0.00 3.02
387 388 3.561143 TGCTTAACCTTCTTGCCTCAAA 58.439 40.909 0.00 0.00 0.00 2.69
388 389 3.957497 TGCTTAACCTTCTTGCCTCAAAA 59.043 39.130 0.00 0.00 0.00 2.44
389 390 4.588528 TGCTTAACCTTCTTGCCTCAAAAT 59.411 37.500 0.00 0.00 0.00 1.82
390 391 5.070313 TGCTTAACCTTCTTGCCTCAAAATT 59.930 36.000 0.00 0.00 0.00 1.82
391 392 5.991606 GCTTAACCTTCTTGCCTCAAAATTT 59.008 36.000 0.00 0.00 0.00 1.82
392 393 6.073602 GCTTAACCTTCTTGCCTCAAAATTTG 60.074 38.462 0.00 0.00 0.00 2.32
393 394 3.732212 ACCTTCTTGCCTCAAAATTTGC 58.268 40.909 0.00 0.00 0.00 3.68
394 395 3.134442 ACCTTCTTGCCTCAAAATTTGCA 59.866 39.130 0.00 0.00 0.00 4.08
395 396 3.744426 CCTTCTTGCCTCAAAATTTGCAG 59.256 43.478 0.00 0.19 34.81 4.41
396 397 3.389925 TCTTGCCTCAAAATTTGCAGG 57.610 42.857 15.26 15.26 34.81 4.85
397 398 2.699846 TCTTGCCTCAAAATTTGCAGGT 59.300 40.909 18.47 0.00 34.81 4.00
398 399 3.894427 TCTTGCCTCAAAATTTGCAGGTA 59.106 39.130 18.47 14.22 34.81 3.08
399 400 3.940209 TGCCTCAAAATTTGCAGGTAG 57.060 42.857 18.47 5.60 33.36 3.18
400 401 2.029110 TGCCTCAAAATTTGCAGGTAGC 60.029 45.455 18.47 9.02 45.96 3.58
413 414 4.756084 GCAGGTAGCATTTGGATATGAC 57.244 45.455 0.00 0.00 44.79 3.06
414 415 3.187227 GCAGGTAGCATTTGGATATGACG 59.813 47.826 0.00 0.00 44.79 4.35
415 416 4.631131 CAGGTAGCATTTGGATATGACGA 58.369 43.478 0.00 0.00 0.00 4.20
416 417 5.056480 CAGGTAGCATTTGGATATGACGAA 58.944 41.667 0.00 0.00 0.00 3.85
417 418 5.178252 CAGGTAGCATTTGGATATGACGAAG 59.822 44.000 0.00 0.00 0.00 3.79
418 419 5.070446 AGGTAGCATTTGGATATGACGAAGA 59.930 40.000 0.00 0.00 0.00 2.87
419 420 5.406780 GGTAGCATTTGGATATGACGAAGAG 59.593 44.000 0.00 0.00 0.00 2.85
420 421 5.282055 AGCATTTGGATATGACGAAGAGA 57.718 39.130 0.00 0.00 0.00 3.10
421 422 5.674525 AGCATTTGGATATGACGAAGAGAA 58.325 37.500 0.00 0.00 0.00 2.87
422 423 5.525378 AGCATTTGGATATGACGAAGAGAAC 59.475 40.000 0.00 0.00 0.00 3.01
423 424 5.294306 GCATTTGGATATGACGAAGAGAACA 59.706 40.000 0.00 0.00 0.00 3.18
424 425 6.017605 GCATTTGGATATGACGAAGAGAACAT 60.018 38.462 0.00 0.00 0.00 2.71
425 426 7.171508 GCATTTGGATATGACGAAGAGAACATA 59.828 37.037 0.00 0.00 0.00 2.29
426 427 9.045223 CATTTGGATATGACGAAGAGAACATAA 57.955 33.333 0.00 0.00 0.00 1.90
427 428 9.613428 ATTTGGATATGACGAAGAGAACATAAA 57.387 29.630 0.00 0.00 0.00 1.40
428 429 9.443323 TTTGGATATGACGAAGAGAACATAAAA 57.557 29.630 0.00 0.00 0.00 1.52
429 430 9.443323 TTGGATATGACGAAGAGAACATAAAAA 57.557 29.630 0.00 0.00 0.00 1.94
430 431 9.613428 TGGATATGACGAAGAGAACATAAAAAT 57.387 29.630 0.00 0.00 0.00 1.82
435 436 9.965824 ATGACGAAGAGAACATAAAAATTTTGT 57.034 25.926 3.73 0.00 0.00 2.83
436 437 9.445786 TGACGAAGAGAACATAAAAATTTTGTC 57.554 29.630 3.73 3.61 0.00 3.18
437 438 9.665264 GACGAAGAGAACATAAAAATTTTGTCT 57.335 29.630 3.73 3.08 0.00 3.41
456 457 9.650539 TTTTGTCTTGATTTTCTTGACATTTCA 57.349 25.926 0.00 0.00 37.47 2.69
457 458 9.650539 TTTGTCTTGATTTTCTTGACATTTCAA 57.349 25.926 0.00 0.00 39.55 2.69
458 459 9.650539 TTGTCTTGATTTTCTTGACATTTCAAA 57.349 25.926 0.00 0.00 41.34 2.69
459 460 9.650539 TGTCTTGATTTTCTTGACATTTCAAAA 57.349 25.926 0.00 0.00 41.34 2.44
480 481 4.743057 AATTATTTTTGGGCCAGAGAGC 57.257 40.909 6.23 0.00 0.00 4.09
481 482 2.897271 TATTTTTGGGCCAGAGAGCA 57.103 45.000 6.23 0.00 0.00 4.26
482 483 1.260544 ATTTTTGGGCCAGAGAGCAC 58.739 50.000 6.23 0.00 36.41 4.40
483 484 1.172180 TTTTTGGGCCAGAGAGCACG 61.172 55.000 6.23 0.00 39.82 5.34
484 485 2.337879 TTTTGGGCCAGAGAGCACGT 62.338 55.000 6.23 0.00 39.82 4.49
485 486 3.535629 TTGGGCCAGAGAGCACGTG 62.536 63.158 12.28 12.28 39.82 4.49
507 508 4.605640 CTCTTGGGAGCCAAAATTTGAA 57.394 40.909 7.37 0.00 43.44 2.69
508 509 5.156608 CTCTTGGGAGCCAAAATTTGAAT 57.843 39.130 7.37 0.00 43.44 2.57
509 510 5.554070 CTCTTGGGAGCCAAAATTTGAATT 58.446 37.500 7.37 0.00 43.44 2.17
510 511 5.939447 TCTTGGGAGCCAAAATTTGAATTT 58.061 33.333 7.37 0.00 43.44 1.82
511 512 5.997129 TCTTGGGAGCCAAAATTTGAATTTC 59.003 36.000 7.37 0.00 43.44 2.17
512 513 4.650734 TGGGAGCCAAAATTTGAATTTCC 58.349 39.130 7.37 7.96 37.62 3.13
513 514 4.350520 TGGGAGCCAAAATTTGAATTTCCT 59.649 37.500 7.37 0.98 37.62 3.36
514 515 4.696877 GGGAGCCAAAATTTGAATTTCCTG 59.303 41.667 7.37 0.00 37.62 3.86
515 516 5.308014 GGAGCCAAAATTTGAATTTCCTGT 58.692 37.500 7.37 0.00 37.62 4.00
516 517 5.764686 GGAGCCAAAATTTGAATTTCCTGTT 59.235 36.000 7.37 0.00 37.62 3.16
517 518 6.934083 GGAGCCAAAATTTGAATTTCCTGTTA 59.066 34.615 7.37 0.00 37.62 2.41
518 519 7.118245 GGAGCCAAAATTTGAATTTCCTGTTAG 59.882 37.037 7.37 0.00 37.62 2.34
519 520 7.734942 AGCCAAAATTTGAATTTCCTGTTAGA 58.265 30.769 7.37 0.00 37.62 2.10
520 521 8.377799 AGCCAAAATTTGAATTTCCTGTTAGAT 58.622 29.630 7.37 0.00 37.62 1.98
521 522 9.651913 GCCAAAATTTGAATTTCCTGTTAGATA 57.348 29.630 7.37 0.00 37.62 1.98
565 566 6.806388 TGACATATAGTGGCATAGCATTTG 57.194 37.500 0.00 0.00 42.26 2.32
566 567 6.298361 TGACATATAGTGGCATAGCATTTGT 58.702 36.000 0.00 0.00 42.26 2.83
567 568 6.772233 TGACATATAGTGGCATAGCATTTGTT 59.228 34.615 0.00 0.00 42.26 2.83
568 569 7.936301 TGACATATAGTGGCATAGCATTTGTTA 59.064 33.333 0.00 0.00 42.26 2.41
569 570 8.868522 ACATATAGTGGCATAGCATTTGTTAT 57.131 30.769 0.00 0.00 0.00 1.89
570 571 8.733458 ACATATAGTGGCATAGCATTTGTTATG 58.267 33.333 9.33 9.33 40.67 1.90
571 572 8.949177 CATATAGTGGCATAGCATTTGTTATGA 58.051 33.333 15.84 0.00 40.31 2.15
572 573 9.690913 ATATAGTGGCATAGCATTTGTTATGAT 57.309 29.630 15.84 5.23 40.31 2.45
574 575 7.206981 AGTGGCATAGCATTTGTTATGATAC 57.793 36.000 15.84 12.83 40.31 2.24
575 576 6.073058 AGTGGCATAGCATTTGTTATGATACG 60.073 38.462 15.84 0.00 40.31 3.06
576 577 5.088739 GGCATAGCATTTGTTATGATACGC 58.911 41.667 15.84 0.00 40.31 4.42
577 578 5.334802 GGCATAGCATTTGTTATGATACGCA 60.335 40.000 15.84 0.00 40.31 5.24
578 579 6.142139 GCATAGCATTTGTTATGATACGCAA 58.858 36.000 15.84 0.00 40.31 4.85
579 580 6.303970 GCATAGCATTTGTTATGATACGCAAG 59.696 38.462 15.84 0.00 40.31 4.01
580 581 7.355017 CATAGCATTTGTTATGATACGCAAGT 58.645 34.615 8.27 0.00 45.92 3.16
581 582 7.531871 CATAGCATTTGTTATGATACGCAAGTC 59.468 37.037 8.27 0.00 43.20 3.01
597 598 6.653273 CGCAAGTCTTTCATTCTTATCTCA 57.347 37.500 0.00 0.00 0.00 3.27
598 599 7.065216 CGCAAGTCTTTCATTCTTATCTCAA 57.935 36.000 0.00 0.00 0.00 3.02
599 600 6.958193 CGCAAGTCTTTCATTCTTATCTCAAC 59.042 38.462 0.00 0.00 0.00 3.18
600 601 7.360353 CGCAAGTCTTTCATTCTTATCTCAACA 60.360 37.037 0.00 0.00 0.00 3.33
601 602 8.292448 GCAAGTCTTTCATTCTTATCTCAACAA 58.708 33.333 0.00 0.00 0.00 2.83
608 609 8.761575 TTCATTCTTATCTCAACAAAATTGCC 57.238 30.769 0.00 0.00 0.00 4.52
609 610 7.894708 TCATTCTTATCTCAACAAAATTGCCA 58.105 30.769 0.00 0.00 0.00 4.92
610 611 8.030692 TCATTCTTATCTCAACAAAATTGCCAG 58.969 33.333 0.00 0.00 0.00 4.85
611 612 6.899393 TCTTATCTCAACAAAATTGCCAGT 57.101 33.333 0.00 0.00 0.00 4.00
612 613 7.288810 TCTTATCTCAACAAAATTGCCAGTT 57.711 32.000 0.00 0.00 0.00 3.16
613 614 7.147312 TCTTATCTCAACAAAATTGCCAGTTG 58.853 34.615 0.00 0.00 41.90 3.16
614 615 4.057406 TCTCAACAAAATTGCCAGTTGG 57.943 40.909 0.00 0.00 41.14 3.77
627 628 2.304092 CCAGTTGGCATGCATGATAGT 58.696 47.619 30.64 13.35 0.00 2.12
631 632 2.189594 TGGCATGCATGATAGTAGCC 57.810 50.000 30.64 21.31 40.93 3.93
670 677 3.006967 GGACAGCCTCGGTGAATGTATAT 59.993 47.826 0.00 0.00 34.87 0.86
673 680 3.990469 CAGCCTCGGTGAATGTATATCAC 59.010 47.826 0.00 0.00 45.08 3.06
682 689 6.477669 GTGAATGTATATCACAGAGCATGG 57.522 41.667 0.00 0.00 45.13 3.66
683 690 5.994054 GTGAATGTATATCACAGAGCATGGT 59.006 40.000 0.00 0.00 45.13 3.55
685 692 6.042437 TGAATGTATATCACAGAGCATGGTCT 59.958 38.462 21.55 21.55 41.51 3.85
700 707 0.972983 GGTCTGTCTAGGGCTCTGCA 60.973 60.000 0.00 0.00 0.00 4.41
734 741 1.270571 TGCATCTTCCTGTGTACGCAA 60.271 47.619 10.85 0.00 0.00 4.85
737 744 0.320421 TCTTCCTGTGTACGCAAGCC 60.320 55.000 10.85 0.00 45.62 4.35
739 746 0.882927 TTCCTGTGTACGCAAGCCAC 60.883 55.000 10.85 0.00 45.62 5.01
746 753 0.878416 GTACGCAAGCCACATTTGGA 59.122 50.000 0.86 0.00 45.91 3.53
747 754 0.878416 TACGCAAGCCACATTTGGAC 59.122 50.000 0.86 0.00 45.91 4.02
748 755 1.106351 ACGCAAGCCACATTTGGACA 61.106 50.000 0.86 0.00 45.91 4.02
749 756 3.017368 ACGCAAGCCACATTTGGACAG 62.017 52.381 0.86 0.00 45.91 3.51
756 763 1.890876 CACATTTGGACAGGAACCGA 58.109 50.000 0.00 0.00 0.00 4.69
873 888 1.306148 CACATGCTCGGATGCTCAAT 58.694 50.000 0.00 0.00 0.00 2.57
915 930 6.749216 CGTATAAAAGAGACGCACATACAT 57.251 37.500 0.00 0.00 35.72 2.29
916 931 6.572472 CGTATAAAAGAGACGCACATACATG 58.428 40.000 0.00 0.00 35.72 3.21
917 932 3.747099 AAAAGAGACGCACATACATGC 57.253 42.857 0.00 0.00 42.48 4.06
918 933 2.385013 AAGAGACGCACATACATGCA 57.615 45.000 0.00 0.00 46.47 3.96
919 934 2.609427 AGAGACGCACATACATGCAT 57.391 45.000 0.00 0.00 46.47 3.96
961 976 3.120199 CCACACTGACAAATCAATCCGTC 60.120 47.826 0.00 0.00 33.30 4.79
1566 1608 3.773119 AGAAGGTCGCCAATAAGTTCCTA 59.227 43.478 0.00 0.00 0.00 2.94
1645 1863 0.951040 GCTTCACTTCTGGGTGGACG 60.951 60.000 0.00 0.00 37.75 4.79
1686 1907 2.181021 GACTACACCCCGCTCGTG 59.819 66.667 0.00 0.00 37.26 4.35
2055 2288 1.200716 GTGAACTCGATGGTGGACGTA 59.799 52.381 0.00 0.00 0.00 3.57
2096 2329 1.696832 GCGTTCGTGGAGATGAAGGC 61.697 60.000 0.00 0.00 46.25 4.35
2290 2526 7.095017 GCCTCTGCCTGTAATAATAAATCTGTC 60.095 40.741 0.00 0.00 0.00 3.51
2366 2604 2.550830 AGTAGCCTGAAACACTGGTG 57.449 50.000 0.00 0.00 39.38 4.17
2387 2625 4.757149 GTGAGCTGTTCCATCTTGTTTAGT 59.243 41.667 0.00 0.00 0.00 2.24
2388 2626 5.932303 GTGAGCTGTTCCATCTTGTTTAGTA 59.068 40.000 0.00 0.00 0.00 1.82
2415 2653 5.286082 CGAGTAAAATAAAAGCACATGCCAC 59.714 40.000 0.00 0.00 43.38 5.01
2434 2672 4.066490 CCACCTGTTACAAACGGTTCATA 58.934 43.478 0.00 0.00 36.59 2.15
2514 2759 7.758495 ACTTTTTAACGGATTTGCTATACCTG 58.242 34.615 0.00 0.00 0.00 4.00
2539 2784 6.302615 CAAGCAATCGATTATTCTTCGGATC 58.697 40.000 10.97 0.00 37.22 3.36
2564 2809 1.431496 ATTTCTTGCCAATGCGTTGC 58.569 45.000 13.42 9.30 41.78 4.17
2584 2829 0.108567 GGAGCTTTGAGACCGAGACC 60.109 60.000 0.00 0.00 0.00 3.85
2601 2846 1.947456 GACCGGTATTTGGCATTCCTC 59.053 52.381 7.34 0.00 0.00 3.71
2620 2865 8.780249 CATTCCTCAAGCAATTGATTTTTCTTT 58.220 29.630 10.34 0.00 0.00 2.52
2625 2870 8.314143 TCAAGCAATTGATTTTTCTTTGGATC 57.686 30.769 10.34 0.00 0.00 3.36
2636 2881 9.550811 GATTTTTCTTTGGATCAATTGATTTGC 57.449 29.630 21.57 9.43 34.37 3.68
2637 2882 7.437793 TTTTCTTTGGATCAATTGATTTGCC 57.562 32.000 21.57 17.77 34.37 4.52
2661 2906 9.372369 GCCATTCTATTATACTAGTCATCAACC 57.628 37.037 0.00 0.00 0.00 3.77
2669 2914 3.866651 ACTAGTCATCAACCTGTGCATC 58.133 45.455 0.00 0.00 0.00 3.91
2682 2927 3.711348 GCATCTGCACGGTCTAGC 58.289 61.111 0.00 0.00 41.59 3.42
2683 2928 1.153568 GCATCTGCACGGTCTAGCA 60.154 57.895 0.00 0.00 41.59 3.49
2684 2929 0.531532 GCATCTGCACGGTCTAGCAT 60.532 55.000 0.00 0.00 40.42 3.79
2686 2931 2.803133 GCATCTGCACGGTCTAGCATTA 60.803 50.000 0.00 0.00 40.42 1.90
2687 2932 3.657634 CATCTGCACGGTCTAGCATTAT 58.342 45.455 0.00 0.00 40.42 1.28
2688 2933 4.809673 CATCTGCACGGTCTAGCATTATA 58.190 43.478 0.00 0.00 40.42 0.98
2752 3003 5.005299 ACTTGCATTTTTAGCAACGTGAAAC 59.995 36.000 0.00 0.00 46.13 2.78
2766 3017 6.237808 GCAACGTGAAACATTGACAGAAAAAT 60.238 34.615 0.00 0.00 35.74 1.82
2767 3018 7.673776 GCAACGTGAAACATTGACAGAAAAATT 60.674 33.333 0.00 0.00 35.74 1.82
2840 3094 1.522806 GTGTGGCACGGAGACAACA 60.523 57.895 13.77 0.00 0.00 3.33
2850 3104 4.988598 AGACAACACCGCCCGCAG 62.989 66.667 0.00 0.00 0.00 5.18
2874 3129 2.586792 GTCCGGGAGAATGCAGCT 59.413 61.111 0.00 0.00 0.00 4.24
3015 3289 2.124085 TGTCCCCCACGATTCCCT 59.876 61.111 0.00 0.00 0.00 4.20
3096 3411 1.808945 CAGTTGCCATCTCAGGTCAAC 59.191 52.381 0.00 0.00 41.64 3.18
3120 3435 3.620472 GCCAGATGCCATTTTTGGACAAT 60.620 43.478 7.70 0.00 0.00 2.71
3132 3447 1.401761 TGGACAATTGCAGCTGTTGT 58.598 45.000 18.14 18.14 38.66 3.32
3147 3462 2.679837 CTGTTGTCATGTATGGTCTGGC 59.320 50.000 0.00 0.00 0.00 4.85
3151 3466 3.317406 TGTCATGTATGGTCTGGCCTAT 58.683 45.455 3.32 0.00 38.35 2.57
3203 3519 4.413760 AGTTGCCACCTACTAACACTAGA 58.586 43.478 0.00 0.00 0.00 2.43
3242 3558 5.455392 CACTACAAGAAGACATGGCAAAAG 58.545 41.667 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.318762 GACTCCAGACTCGGCTTGTT 59.681 55.000 0.00 0.00 0.00 2.83
1 2 0.540830 AGACTCCAGACTCGGCTTGT 60.541 55.000 0.00 0.00 0.00 3.16
2 3 0.605589 AAGACTCCAGACTCGGCTTG 59.394 55.000 0.00 0.00 0.00 4.01
3 4 0.605589 CAAGACTCCAGACTCGGCTT 59.394 55.000 0.00 0.00 0.00 4.35
4 5 0.251386 TCAAGACTCCAGACTCGGCT 60.251 55.000 0.00 0.00 0.00 5.52
5 6 0.172352 CTCAAGACTCCAGACTCGGC 59.828 60.000 0.00 0.00 0.00 5.54
6 7 1.470890 GACTCAAGACTCCAGACTCGG 59.529 57.143 0.00 0.00 0.00 4.63
7 8 2.418628 GAGACTCAAGACTCCAGACTCG 59.581 54.545 0.00 0.00 32.14 4.18
8 9 2.418628 CGAGACTCAAGACTCCAGACTC 59.581 54.545 2.82 0.00 34.22 3.36
9 10 2.039216 TCGAGACTCAAGACTCCAGACT 59.961 50.000 2.82 0.00 34.22 3.24
10 11 2.428491 TCGAGACTCAAGACTCCAGAC 58.572 52.381 2.82 0.00 34.22 3.51
11 12 2.861147 TCGAGACTCAAGACTCCAGA 57.139 50.000 2.82 0.00 34.22 3.86
12 13 3.065233 CAGATCGAGACTCAAGACTCCAG 59.935 52.174 2.82 0.00 34.22 3.86
13 14 3.013219 CAGATCGAGACTCAAGACTCCA 58.987 50.000 2.82 0.00 34.22 3.86
14 15 2.357637 CCAGATCGAGACTCAAGACTCC 59.642 54.545 2.82 0.00 34.22 3.85
15 16 3.013921 ACCAGATCGAGACTCAAGACTC 58.986 50.000 2.82 0.21 34.36 3.36
16 17 3.080300 ACCAGATCGAGACTCAAGACT 57.920 47.619 2.82 0.00 0.00 3.24
17 18 3.191581 TCAACCAGATCGAGACTCAAGAC 59.808 47.826 2.82 0.00 0.00 3.01
18 19 3.421844 TCAACCAGATCGAGACTCAAGA 58.578 45.455 2.82 0.00 0.00 3.02
19 20 3.857549 TCAACCAGATCGAGACTCAAG 57.142 47.619 2.82 0.00 0.00 3.02
20 21 4.220602 TCAATCAACCAGATCGAGACTCAA 59.779 41.667 2.82 0.00 35.39 3.02
21 22 3.763897 TCAATCAACCAGATCGAGACTCA 59.236 43.478 2.82 0.00 35.39 3.41
22 23 4.377839 TCAATCAACCAGATCGAGACTC 57.622 45.455 0.00 0.00 35.39 3.36
23 24 4.442612 CCATCAATCAACCAGATCGAGACT 60.443 45.833 0.00 0.00 35.39 3.24
24 25 3.806521 CCATCAATCAACCAGATCGAGAC 59.193 47.826 0.00 0.00 35.39 3.36
25 26 3.742327 GCCATCAATCAACCAGATCGAGA 60.742 47.826 0.00 0.00 35.39 4.04
26 27 2.547211 GCCATCAATCAACCAGATCGAG 59.453 50.000 0.00 0.00 35.39 4.04
27 28 2.171237 AGCCATCAATCAACCAGATCGA 59.829 45.455 0.00 0.00 35.39 3.59
28 29 2.569059 AGCCATCAATCAACCAGATCG 58.431 47.619 0.00 0.00 35.39 3.69
29 30 3.949754 TCAAGCCATCAATCAACCAGATC 59.050 43.478 0.00 0.00 35.39 2.75
30 31 3.972133 TCAAGCCATCAATCAACCAGAT 58.028 40.909 0.00 0.00 39.09 2.90
31 32 3.438216 TCAAGCCATCAATCAACCAGA 57.562 42.857 0.00 0.00 0.00 3.86
32 33 3.508793 AGTTCAAGCCATCAATCAACCAG 59.491 43.478 0.00 0.00 0.00 4.00
33 34 3.256383 CAGTTCAAGCCATCAATCAACCA 59.744 43.478 0.00 0.00 0.00 3.67
34 35 3.841643 CAGTTCAAGCCATCAATCAACC 58.158 45.455 0.00 0.00 0.00 3.77
35 36 3.248266 GCAGTTCAAGCCATCAATCAAC 58.752 45.455 0.00 0.00 0.00 3.18
36 37 3.581024 GCAGTTCAAGCCATCAATCAA 57.419 42.857 0.00 0.00 0.00 2.57
46 47 1.298859 CCAGTACGGGCAGTTCAAGC 61.299 60.000 0.00 0.00 0.00 4.01
47 48 0.320374 TCCAGTACGGGCAGTTCAAG 59.680 55.000 7.24 0.00 34.36 3.02
48 49 0.981183 ATCCAGTACGGGCAGTTCAA 59.019 50.000 7.24 0.00 34.36 2.69
49 50 1.754803 CTATCCAGTACGGGCAGTTCA 59.245 52.381 7.24 0.00 34.36 3.18
50 51 1.755380 ACTATCCAGTACGGGCAGTTC 59.245 52.381 7.24 0.00 31.45 3.01
51 52 1.861982 ACTATCCAGTACGGGCAGTT 58.138 50.000 7.24 0.00 31.45 3.16
52 53 2.742428 TACTATCCAGTACGGGCAGT 57.258 50.000 18.20 18.20 36.14 4.40
53 54 3.154710 TGATACTATCCAGTACGGGCAG 58.845 50.000 7.24 9.21 40.06 4.85
54 55 3.232720 TGATACTATCCAGTACGGGCA 57.767 47.619 7.24 0.00 40.06 5.36
55 56 5.909621 TTATGATACTATCCAGTACGGGC 57.090 43.478 7.24 0.00 40.06 6.13
56 57 7.463961 AGTTTATGATACTATCCAGTACGGG 57.536 40.000 5.57 5.57 40.06 5.28
82 83 7.681939 TCATACACTAGTATCATACGCATGA 57.318 36.000 0.00 0.00 45.15 3.07
83 84 9.439537 GTATCATACACTAGTATCATACGCATG 57.560 37.037 0.00 0.00 35.77 4.06
84 85 9.397280 AGTATCATACACTAGTATCATACGCAT 57.603 33.333 0.00 0.00 44.58 4.73
85 86 8.665685 CAGTATCATACACTAGTATCATACGCA 58.334 37.037 0.00 0.00 44.58 5.24
86 87 8.666573 ACAGTATCATACACTAGTATCATACGC 58.333 37.037 0.00 0.00 44.58 4.42
91 92 8.989980 CGAAGACAGTATCATACACTAGTATCA 58.010 37.037 0.00 0.00 38.88 2.15
92 93 8.991026 ACGAAGACAGTATCATACACTAGTATC 58.009 37.037 0.00 0.00 38.88 2.24
93 94 8.905660 ACGAAGACAGTATCATACACTAGTAT 57.094 34.615 0.00 0.00 41.57 2.12
94 95 9.822185 TTACGAAGACAGTATCATACACTAGTA 57.178 33.333 0.00 0.96 34.10 1.82
95 96 8.728337 TTACGAAGACAGTATCATACACTAGT 57.272 34.615 0.00 0.00 0.00 2.57
96 97 9.600646 CATTACGAAGACAGTATCATACACTAG 57.399 37.037 0.00 0.00 0.00 2.57
97 98 8.074370 GCATTACGAAGACAGTATCATACACTA 58.926 37.037 0.00 0.00 0.00 2.74
98 99 6.918569 GCATTACGAAGACAGTATCATACACT 59.081 38.462 0.00 0.00 0.00 3.55
99 100 6.695713 TGCATTACGAAGACAGTATCATACAC 59.304 38.462 0.00 0.00 0.00 2.90
100 101 6.801575 TGCATTACGAAGACAGTATCATACA 58.198 36.000 0.00 0.00 0.00 2.29
101 102 7.875316 ATGCATTACGAAGACAGTATCATAC 57.125 36.000 0.00 0.00 0.00 2.39
102 103 8.793592 ACTATGCATTACGAAGACAGTATCATA 58.206 33.333 3.54 0.00 0.00 2.15
103 104 7.661968 ACTATGCATTACGAAGACAGTATCAT 58.338 34.615 3.54 0.00 0.00 2.45
104 105 7.039313 ACTATGCATTACGAAGACAGTATCA 57.961 36.000 3.54 0.00 0.00 2.15
105 106 9.279904 GATACTATGCATTACGAAGACAGTATC 57.720 37.037 17.94 17.94 36.73 2.24
106 107 8.793592 TGATACTATGCATTACGAAGACAGTAT 58.206 33.333 3.54 8.56 31.25 2.12
107 108 8.161699 TGATACTATGCATTACGAAGACAGTA 57.838 34.615 3.54 3.44 0.00 2.74
108 109 7.039313 TGATACTATGCATTACGAAGACAGT 57.961 36.000 3.54 0.88 0.00 3.55
109 110 9.283420 CTATGATACTATGCATTACGAAGACAG 57.717 37.037 3.54 0.00 0.00 3.51
110 111 9.010029 TCTATGATACTATGCATTACGAAGACA 57.990 33.333 3.54 0.49 0.00 3.41
134 135 9.315363 CCCTCCTGTTATCTAACATACTAATCT 57.685 37.037 3.40 0.00 44.34 2.40
135 136 8.532819 CCCCTCCTGTTATCTAACATACTAATC 58.467 40.741 3.40 0.00 44.34 1.75
136 137 7.038231 GCCCCTCCTGTTATCTAACATACTAAT 60.038 40.741 3.40 0.00 44.34 1.73
137 138 6.269307 GCCCCTCCTGTTATCTAACATACTAA 59.731 42.308 3.40 0.00 44.34 2.24
138 139 5.778750 GCCCCTCCTGTTATCTAACATACTA 59.221 44.000 3.40 0.00 44.34 1.82
139 140 4.593634 GCCCCTCCTGTTATCTAACATACT 59.406 45.833 3.40 0.00 44.34 2.12
140 141 4.560919 CGCCCCTCCTGTTATCTAACATAC 60.561 50.000 3.40 0.00 44.34 2.39
141 142 3.576982 CGCCCCTCCTGTTATCTAACATA 59.423 47.826 3.40 0.00 44.34 2.29
142 143 2.368875 CGCCCCTCCTGTTATCTAACAT 59.631 50.000 3.40 0.00 44.34 2.71
143 144 1.760613 CGCCCCTCCTGTTATCTAACA 59.239 52.381 3.00 3.00 43.32 2.41
144 145 1.761198 ACGCCCCTCCTGTTATCTAAC 59.239 52.381 0.00 0.00 36.74 2.34
145 146 2.170012 ACGCCCCTCCTGTTATCTAA 57.830 50.000 0.00 0.00 0.00 2.10
146 147 2.170012 AACGCCCCTCCTGTTATCTA 57.830 50.000 0.00 0.00 0.00 1.98
147 148 1.286248 AAACGCCCCTCCTGTTATCT 58.714 50.000 0.00 0.00 0.00 1.98
148 149 2.124277 AAAACGCCCCTCCTGTTATC 57.876 50.000 0.00 0.00 0.00 1.75
149 150 2.682858 GCTAAAACGCCCCTCCTGTTAT 60.683 50.000 0.00 0.00 0.00 1.89
150 151 1.339342 GCTAAAACGCCCCTCCTGTTA 60.339 52.381 0.00 0.00 0.00 2.41
151 152 0.608308 GCTAAAACGCCCCTCCTGTT 60.608 55.000 0.00 0.00 0.00 3.16
152 153 1.002502 GCTAAAACGCCCCTCCTGT 60.003 57.895 0.00 0.00 0.00 4.00
153 154 0.744771 GAGCTAAAACGCCCCTCCTG 60.745 60.000 0.00 0.00 0.00 3.86
154 155 1.602771 GAGCTAAAACGCCCCTCCT 59.397 57.895 0.00 0.00 0.00 3.69
155 156 1.451567 GGAGCTAAAACGCCCCTCC 60.452 63.158 0.00 0.00 35.75 4.30
156 157 1.451567 GGGAGCTAAAACGCCCCTC 60.452 63.158 0.00 0.00 43.45 4.30
157 158 2.675371 GGGAGCTAAAACGCCCCT 59.325 61.111 0.00 0.00 43.45 4.79
158 159 2.822701 CGGGAGCTAAAACGCCCC 60.823 66.667 0.47 0.00 46.26 5.80
159 160 2.822701 CCGGGAGCTAAAACGCCC 60.823 66.667 0.00 0.00 45.58 6.13
160 161 2.822701 CCCGGGAGCTAAAACGCC 60.823 66.667 18.48 0.00 0.00 5.68
161 162 2.046604 ACCCGGGAGCTAAAACGC 60.047 61.111 32.02 0.00 0.00 4.84
162 163 0.320946 TTCACCCGGGAGCTAAAACG 60.321 55.000 32.02 3.40 0.00 3.60
163 164 1.162698 GTTCACCCGGGAGCTAAAAC 58.837 55.000 32.02 15.91 0.00 2.43
164 165 0.766131 TGTTCACCCGGGAGCTAAAA 59.234 50.000 32.02 6.58 0.00 1.52
165 166 0.323629 CTGTTCACCCGGGAGCTAAA 59.676 55.000 32.02 7.02 0.00 1.85
166 167 0.834687 ACTGTTCACCCGGGAGCTAA 60.835 55.000 32.02 12.52 0.00 3.09
167 168 0.040058 TACTGTTCACCCGGGAGCTA 59.960 55.000 32.02 8.12 0.00 3.32
168 169 0.834687 TTACTGTTCACCCGGGAGCT 60.835 55.000 32.02 0.04 0.00 4.09
169 170 0.672711 GTTACTGTTCACCCGGGAGC 60.673 60.000 32.02 14.25 0.00 4.70
170 171 0.389426 CGTTACTGTTCACCCGGGAG 60.389 60.000 32.02 21.98 0.00 4.30
171 172 1.667151 CGTTACTGTTCACCCGGGA 59.333 57.895 32.02 1.07 0.00 5.14
172 173 2.030958 GCGTTACTGTTCACCCGGG 61.031 63.158 22.25 22.25 0.00 5.73
173 174 0.881159 TTGCGTTACTGTTCACCCGG 60.881 55.000 0.00 0.00 0.00 5.73
174 175 0.938713 TTTGCGTTACTGTTCACCCG 59.061 50.000 0.00 0.00 0.00 5.28
175 176 3.636282 ATTTTGCGTTACTGTTCACCC 57.364 42.857 0.00 0.00 0.00 4.61
176 177 7.631915 ATTTTATTTTGCGTTACTGTTCACC 57.368 32.000 0.00 0.00 0.00 4.02
230 231 1.546961 AACACGACCACCCACAAAAA 58.453 45.000 0.00 0.00 0.00 1.94
231 232 2.290464 CTAACACGACCACCCACAAAA 58.710 47.619 0.00 0.00 0.00 2.44
232 233 1.209990 ACTAACACGACCACCCACAAA 59.790 47.619 0.00 0.00 0.00 2.83
233 234 0.831966 ACTAACACGACCACCCACAA 59.168 50.000 0.00 0.00 0.00 3.33
234 235 0.105224 CACTAACACGACCACCCACA 59.895 55.000 0.00 0.00 0.00 4.17
235 236 0.105408 ACACTAACACGACCACCCAC 59.895 55.000 0.00 0.00 0.00 4.61
236 237 0.390124 GACACTAACACGACCACCCA 59.610 55.000 0.00 0.00 0.00 4.51
237 238 0.665369 CGACACTAACACGACCACCC 60.665 60.000 0.00 0.00 0.00 4.61
238 239 1.280206 GCGACACTAACACGACCACC 61.280 60.000 0.00 0.00 0.00 4.61
239 240 0.595567 TGCGACACTAACACGACCAC 60.596 55.000 0.00 0.00 0.00 4.16
240 241 0.102663 TTGCGACACTAACACGACCA 59.897 50.000 0.00 0.00 0.00 4.02
241 242 0.782384 CTTGCGACACTAACACGACC 59.218 55.000 0.00 0.00 0.00 4.79
242 243 0.161024 GCTTGCGACACTAACACGAC 59.839 55.000 0.00 0.00 0.00 4.34
243 244 0.249114 TGCTTGCGACACTAACACGA 60.249 50.000 0.00 0.00 0.00 4.35
244 245 0.790207 ATGCTTGCGACACTAACACG 59.210 50.000 0.00 0.00 0.00 4.49
245 246 1.725931 GCATGCTTGCGACACTAACAC 60.726 52.381 11.37 0.00 39.49 3.32
246 247 0.516877 GCATGCTTGCGACACTAACA 59.483 50.000 11.37 0.00 39.49 2.41
247 248 3.296516 GCATGCTTGCGACACTAAC 57.703 52.632 11.37 0.00 39.49 2.34
257 258 3.655486 TGAAATTTGTCAGGCATGCTTG 58.345 40.909 22.93 22.93 0.00 4.01
258 259 4.250464 CATGAAATTTGTCAGGCATGCTT 58.750 39.130 18.92 7.19 0.00 3.91
259 260 3.259876 ACATGAAATTTGTCAGGCATGCT 59.740 39.130 18.92 0.11 37.28 3.79
260 261 3.369756 CACATGAAATTTGTCAGGCATGC 59.630 43.478 9.90 9.90 37.28 4.06
261 262 4.811908 TCACATGAAATTTGTCAGGCATG 58.188 39.130 0.00 11.64 39.09 4.06
262 263 5.471556 TTCACATGAAATTTGTCAGGCAT 57.528 34.783 0.00 0.00 32.57 4.40
263 264 4.933505 TTCACATGAAATTTGTCAGGCA 57.066 36.364 0.00 0.00 32.57 4.75
274 275 5.921976 CACTGCTGCTTTATTTCACATGAAA 59.078 36.000 9.38 9.38 46.60 2.69
275 276 5.009911 ACACTGCTGCTTTATTTCACATGAA 59.990 36.000 0.00 0.00 0.00 2.57
276 277 4.520111 ACACTGCTGCTTTATTTCACATGA 59.480 37.500 0.00 0.00 0.00 3.07
277 278 4.801891 ACACTGCTGCTTTATTTCACATG 58.198 39.130 0.00 0.00 0.00 3.21
278 279 5.458041 AACACTGCTGCTTTATTTCACAT 57.542 34.783 0.00 0.00 0.00 3.21
279 280 4.916983 AACACTGCTGCTTTATTTCACA 57.083 36.364 0.00 0.00 0.00 3.58
280 281 5.519927 ACAAAACACTGCTGCTTTATTTCAC 59.480 36.000 0.00 0.00 0.00 3.18
281 282 5.659463 ACAAAACACTGCTGCTTTATTTCA 58.341 33.333 0.00 0.00 0.00 2.69
282 283 5.748152 TGACAAAACACTGCTGCTTTATTTC 59.252 36.000 0.00 0.00 0.00 2.17
283 284 5.659463 TGACAAAACACTGCTGCTTTATTT 58.341 33.333 0.00 0.00 0.00 1.40
284 285 5.163519 ACTGACAAAACACTGCTGCTTTATT 60.164 36.000 0.00 0.00 0.00 1.40
285 286 4.339247 ACTGACAAAACACTGCTGCTTTAT 59.661 37.500 0.00 0.00 0.00 1.40
286 287 3.694072 ACTGACAAAACACTGCTGCTTTA 59.306 39.130 0.00 0.00 0.00 1.85
287 288 2.493278 ACTGACAAAACACTGCTGCTTT 59.507 40.909 0.00 0.00 0.00 3.51
288 289 2.094675 ACTGACAAAACACTGCTGCTT 58.905 42.857 0.00 0.00 0.00 3.91
289 290 1.402968 CACTGACAAAACACTGCTGCT 59.597 47.619 0.00 0.00 0.00 4.24
290 291 1.401552 TCACTGACAAAACACTGCTGC 59.598 47.619 0.00 0.00 0.00 5.25
291 292 3.763097 TTCACTGACAAAACACTGCTG 57.237 42.857 0.00 0.00 0.00 4.41
292 293 4.782019 TTTTCACTGACAAAACACTGCT 57.218 36.364 0.00 0.00 0.00 4.24
293 294 5.060940 GTCTTTTTCACTGACAAAACACTGC 59.939 40.000 0.00 0.00 0.00 4.40
294 295 6.148948 TGTCTTTTTCACTGACAAAACACTG 58.851 36.000 0.00 0.00 37.71 3.66
295 296 6.325919 TGTCTTTTTCACTGACAAAACACT 57.674 33.333 0.00 0.00 37.71 3.55
301 302 6.593382 CCCAATTTTGTCTTTTTCACTGACAA 59.407 34.615 0.00 0.00 45.31 3.18
302 303 6.105333 CCCAATTTTGTCTTTTTCACTGACA 58.895 36.000 0.00 0.00 38.71 3.58
303 304 5.523552 CCCCAATTTTGTCTTTTTCACTGAC 59.476 40.000 0.00 0.00 0.00 3.51
304 305 5.188751 ACCCCAATTTTGTCTTTTTCACTGA 59.811 36.000 0.00 0.00 0.00 3.41
305 306 5.294060 CACCCCAATTTTGTCTTTTTCACTG 59.706 40.000 0.00 0.00 0.00 3.66
306 307 5.188751 TCACCCCAATTTTGTCTTTTTCACT 59.811 36.000 0.00 0.00 0.00 3.41
307 308 5.293324 GTCACCCCAATTTTGTCTTTTTCAC 59.707 40.000 0.00 0.00 0.00 3.18
308 309 5.423886 GTCACCCCAATTTTGTCTTTTTCA 58.576 37.500 0.00 0.00 0.00 2.69
309 310 4.814234 GGTCACCCCAATTTTGTCTTTTTC 59.186 41.667 0.00 0.00 0.00 2.29
310 311 4.473196 AGGTCACCCCAATTTTGTCTTTTT 59.527 37.500 0.00 0.00 34.66 1.94
311 312 4.037222 AGGTCACCCCAATTTTGTCTTTT 58.963 39.130 0.00 0.00 34.66 2.27
312 313 3.653164 AGGTCACCCCAATTTTGTCTTT 58.347 40.909 0.00 0.00 34.66 2.52
313 314 3.328535 AGGTCACCCCAATTTTGTCTT 57.671 42.857 0.00 0.00 34.66 3.01
314 315 3.328535 AAGGTCACCCCAATTTTGTCT 57.671 42.857 0.00 0.00 34.66 3.41
315 316 3.494223 CCAAAGGTCACCCCAATTTTGTC 60.494 47.826 5.12 0.00 34.66 3.18
316 317 2.437651 CCAAAGGTCACCCCAATTTTGT 59.562 45.455 5.12 0.00 34.66 2.83
317 318 2.437651 ACCAAAGGTCACCCCAATTTTG 59.562 45.455 0.00 0.00 34.66 2.44
318 319 2.437651 CACCAAAGGTCACCCCAATTTT 59.562 45.455 0.00 0.00 31.02 1.82
319 320 2.046292 CACCAAAGGTCACCCCAATTT 58.954 47.619 0.00 0.00 31.02 1.82
320 321 1.062505 ACACCAAAGGTCACCCCAATT 60.063 47.619 0.00 0.00 31.02 2.32
321 322 0.560688 ACACCAAAGGTCACCCCAAT 59.439 50.000 0.00 0.00 31.02 3.16
322 323 0.336737 AACACCAAAGGTCACCCCAA 59.663 50.000 0.00 0.00 31.02 4.12
323 324 0.336737 AAACACCAAAGGTCACCCCA 59.663 50.000 0.00 0.00 31.02 4.96
324 325 0.750249 CAAACACCAAAGGTCACCCC 59.250 55.000 0.00 0.00 31.02 4.95
325 326 1.770294 TCAAACACCAAAGGTCACCC 58.230 50.000 0.00 0.00 31.02 4.61
326 327 4.400529 AAATCAAACACCAAAGGTCACC 57.599 40.909 0.00 0.00 31.02 4.02
349 350 6.652900 GGTTAAGCATTTTGGCCTATGAAAAA 59.347 34.615 3.32 1.83 0.00 1.94
350 351 6.013812 AGGTTAAGCATTTTGGCCTATGAAAA 60.014 34.615 3.32 2.26 0.00 2.29
351 352 5.483583 AGGTTAAGCATTTTGGCCTATGAAA 59.516 36.000 3.32 0.20 0.00 2.69
352 353 5.022787 AGGTTAAGCATTTTGGCCTATGAA 58.977 37.500 3.32 0.00 0.00 2.57
353 354 4.609301 AGGTTAAGCATTTTGGCCTATGA 58.391 39.130 3.32 0.00 0.00 2.15
354 355 5.127682 AGAAGGTTAAGCATTTTGGCCTATG 59.872 40.000 3.32 6.50 0.00 2.23
355 356 5.272402 AGAAGGTTAAGCATTTTGGCCTAT 58.728 37.500 3.32 0.00 0.00 2.57
356 357 4.672899 AGAAGGTTAAGCATTTTGGCCTA 58.327 39.130 3.32 0.00 0.00 3.93
357 358 3.510459 AGAAGGTTAAGCATTTTGGCCT 58.490 40.909 3.32 0.00 0.00 5.19
358 359 3.961480 AGAAGGTTAAGCATTTTGGCC 57.039 42.857 7.52 0.00 0.00 5.36
359 360 3.433274 GCAAGAAGGTTAAGCATTTTGGC 59.567 43.478 13.00 4.11 0.00 4.52
360 361 3.996363 GGCAAGAAGGTTAAGCATTTTGG 59.004 43.478 13.00 0.00 0.00 3.28
361 362 4.886579 AGGCAAGAAGGTTAAGCATTTTG 58.113 39.130 7.52 7.99 0.00 2.44
362 363 4.588528 TGAGGCAAGAAGGTTAAGCATTTT 59.411 37.500 7.52 0.00 0.00 1.82
363 364 4.151883 TGAGGCAAGAAGGTTAAGCATTT 58.848 39.130 7.52 0.00 0.00 2.32
364 365 3.766545 TGAGGCAAGAAGGTTAAGCATT 58.233 40.909 7.52 0.00 0.00 3.56
365 366 3.439857 TGAGGCAAGAAGGTTAAGCAT 57.560 42.857 7.52 0.00 0.00 3.79
366 367 2.949177 TGAGGCAAGAAGGTTAAGCA 57.051 45.000 7.52 0.00 0.00 3.91
367 368 4.584327 TTTTGAGGCAAGAAGGTTAAGC 57.416 40.909 0.00 0.00 0.00 3.09
368 369 6.073602 GCAAATTTTGAGGCAAGAAGGTTAAG 60.074 38.462 13.26 0.00 0.00 1.85
369 370 5.757808 GCAAATTTTGAGGCAAGAAGGTTAA 59.242 36.000 13.26 0.00 0.00 2.01
370 371 5.163364 TGCAAATTTTGAGGCAAGAAGGTTA 60.163 36.000 13.26 0.00 32.54 2.85
371 372 4.129380 GCAAATTTTGAGGCAAGAAGGTT 58.871 39.130 13.26 0.00 0.00 3.50
372 373 3.134442 TGCAAATTTTGAGGCAAGAAGGT 59.866 39.130 13.26 0.00 32.54 3.50
373 374 3.731089 TGCAAATTTTGAGGCAAGAAGG 58.269 40.909 13.26 0.00 32.54 3.46
374 375 3.744426 CCTGCAAATTTTGAGGCAAGAAG 59.256 43.478 13.26 0.00 35.59 2.85
375 376 3.134442 ACCTGCAAATTTTGAGGCAAGAA 59.866 39.130 13.26 0.00 35.59 2.52
376 377 2.699846 ACCTGCAAATTTTGAGGCAAGA 59.300 40.909 13.26 0.00 35.59 3.02
377 378 3.116079 ACCTGCAAATTTTGAGGCAAG 57.884 42.857 13.26 4.31 35.59 4.01
378 379 3.554752 GCTACCTGCAAATTTTGAGGCAA 60.555 43.478 13.26 7.75 42.31 4.52
379 380 2.029110 GCTACCTGCAAATTTTGAGGCA 60.029 45.455 13.26 6.48 42.31 4.75
380 381 2.610433 GCTACCTGCAAATTTTGAGGC 58.390 47.619 13.26 2.38 42.31 4.70
392 393 3.187227 CGTCATATCCAAATGCTACCTGC 59.813 47.826 0.00 0.00 43.25 4.85
393 394 4.631131 TCGTCATATCCAAATGCTACCTG 58.369 43.478 0.00 0.00 0.00 4.00
394 395 4.955811 TCGTCATATCCAAATGCTACCT 57.044 40.909 0.00 0.00 0.00 3.08
395 396 5.297547 TCTTCGTCATATCCAAATGCTACC 58.702 41.667 0.00 0.00 0.00 3.18
396 397 6.216569 TCTCTTCGTCATATCCAAATGCTAC 58.783 40.000 0.00 0.00 0.00 3.58
397 398 6.405278 TCTCTTCGTCATATCCAAATGCTA 57.595 37.500 0.00 0.00 0.00 3.49
398 399 5.282055 TCTCTTCGTCATATCCAAATGCT 57.718 39.130 0.00 0.00 0.00 3.79
399 400 5.294306 TGTTCTCTTCGTCATATCCAAATGC 59.706 40.000 0.00 0.00 0.00 3.56
400 401 6.908870 TGTTCTCTTCGTCATATCCAAATG 57.091 37.500 0.00 0.00 0.00 2.32
401 402 9.613428 TTTATGTTCTCTTCGTCATATCCAAAT 57.387 29.630 0.00 0.00 0.00 2.32
402 403 9.443323 TTTTATGTTCTCTTCGTCATATCCAAA 57.557 29.630 0.00 0.00 0.00 3.28
403 404 9.443323 TTTTTATGTTCTCTTCGTCATATCCAA 57.557 29.630 0.00 0.00 0.00 3.53
404 405 9.613428 ATTTTTATGTTCTCTTCGTCATATCCA 57.387 29.630 0.00 0.00 0.00 3.41
409 410 9.965824 ACAAAATTTTTATGTTCTCTTCGTCAT 57.034 25.926 0.00 0.00 0.00 3.06
410 411 9.445786 GACAAAATTTTTATGTTCTCTTCGTCA 57.554 29.630 0.00 0.00 0.00 4.35
411 412 9.665264 AGACAAAATTTTTATGTTCTCTTCGTC 57.335 29.630 0.00 1.39 0.00 4.20
430 431 9.650539 TGAAATGTCAAGAAAATCAAGACAAAA 57.349 25.926 0.00 0.00 41.86 2.44
431 432 9.650539 TTGAAATGTCAAGAAAATCAAGACAAA 57.349 25.926 0.00 0.00 41.86 2.83
432 433 9.650539 TTTGAAATGTCAAGAAAATCAAGACAA 57.349 25.926 0.00 0.00 44.49 3.18
433 434 9.650539 TTTTGAAATGTCAAGAAAATCAAGACA 57.349 25.926 0.00 0.00 44.49 3.41
456 457 5.939883 GCTCTCTGGCCCAAAAATAATTTTT 59.060 36.000 0.00 0.00 43.20 1.94
457 458 5.012975 TGCTCTCTGGCCCAAAAATAATTTT 59.987 36.000 0.00 0.00 39.30 1.82
458 459 4.531732 TGCTCTCTGGCCCAAAAATAATTT 59.468 37.500 0.00 0.00 0.00 1.82
459 460 4.081476 GTGCTCTCTGGCCCAAAAATAATT 60.081 41.667 0.00 0.00 0.00 1.40
460 461 3.448660 GTGCTCTCTGGCCCAAAAATAAT 59.551 43.478 0.00 0.00 0.00 1.28
461 462 2.825532 GTGCTCTCTGGCCCAAAAATAA 59.174 45.455 0.00 0.00 0.00 1.40
462 463 2.446435 GTGCTCTCTGGCCCAAAAATA 58.554 47.619 0.00 0.00 0.00 1.40
463 464 1.260544 GTGCTCTCTGGCCCAAAAAT 58.739 50.000 0.00 0.00 0.00 1.82
464 465 1.172180 CGTGCTCTCTGGCCCAAAAA 61.172 55.000 0.00 0.00 0.00 1.94
465 466 1.600636 CGTGCTCTCTGGCCCAAAA 60.601 57.895 0.00 0.00 0.00 2.44
466 467 2.032528 CGTGCTCTCTGGCCCAAA 59.967 61.111 0.00 0.00 0.00 3.28
467 468 3.241530 ACGTGCTCTCTGGCCCAA 61.242 61.111 0.00 0.00 0.00 4.12
468 469 4.007644 CACGTGCTCTCTGGCCCA 62.008 66.667 0.82 0.00 0.00 5.36
486 487 4.605640 TTCAAATTTTGGCTCCCAAGAG 57.394 40.909 9.18 0.00 44.84 2.85
487 488 5.565455 AATTCAAATTTTGGCTCCCAAGA 57.435 34.783 9.18 0.00 44.84 3.02
488 489 5.181811 GGAAATTCAAATTTTGGCTCCCAAG 59.818 40.000 9.18 0.00 44.84 3.61
489 490 5.069318 GGAAATTCAAATTTTGGCTCCCAA 58.931 37.500 9.18 0.00 42.29 4.12
490 491 4.350520 AGGAAATTCAAATTTTGGCTCCCA 59.649 37.500 9.18 0.00 38.64 4.37
491 492 4.696877 CAGGAAATTCAAATTTTGGCTCCC 59.303 41.667 9.18 5.23 38.64 4.30
492 493 5.308014 ACAGGAAATTCAAATTTTGGCTCC 58.692 37.500 9.18 9.49 38.64 4.70
493 494 6.866010 AACAGGAAATTCAAATTTTGGCTC 57.134 33.333 9.18 1.89 38.64 4.70
494 495 7.734942 TCTAACAGGAAATTCAAATTTTGGCT 58.265 30.769 9.18 0.00 38.64 4.75
495 496 7.961325 TCTAACAGGAAATTCAAATTTTGGC 57.039 32.000 9.18 0.00 38.64 4.52
535 536 4.354893 TGCCACTATATGTCATGCATGA 57.645 40.909 25.42 25.42 38.47 3.07
536 537 5.220796 GCTATGCCACTATATGTCATGCATG 60.221 44.000 21.07 21.07 38.47 4.06
537 538 4.880120 GCTATGCCACTATATGTCATGCAT 59.120 41.667 10.02 10.02 41.42 3.96
538 539 4.256110 GCTATGCCACTATATGTCATGCA 58.744 43.478 0.00 0.00 31.98 3.96
539 540 4.256110 TGCTATGCCACTATATGTCATGC 58.744 43.478 0.00 0.00 0.00 4.06
540 541 6.997239 AATGCTATGCCACTATATGTCATG 57.003 37.500 0.00 0.00 0.00 3.07
541 542 6.944290 ACAAATGCTATGCCACTATATGTCAT 59.056 34.615 0.00 0.00 0.00 3.06
542 543 6.298361 ACAAATGCTATGCCACTATATGTCA 58.702 36.000 0.00 0.00 0.00 3.58
543 544 6.808008 ACAAATGCTATGCCACTATATGTC 57.192 37.500 0.00 0.00 0.00 3.06
544 545 8.733458 CATAACAAATGCTATGCCACTATATGT 58.267 33.333 0.00 0.00 0.00 2.29
545 546 8.949177 TCATAACAAATGCTATGCCACTATATG 58.051 33.333 0.05 0.00 0.00 1.78
546 547 9.690913 ATCATAACAAATGCTATGCCACTATAT 57.309 29.630 0.05 0.00 0.00 0.86
548 549 8.950210 GTATCATAACAAATGCTATGCCACTAT 58.050 33.333 0.05 0.00 0.00 2.12
549 550 7.117667 CGTATCATAACAAATGCTATGCCACTA 59.882 37.037 0.05 0.00 0.00 2.74
550 551 6.073058 CGTATCATAACAAATGCTATGCCACT 60.073 38.462 0.05 0.00 0.00 4.00
551 552 6.079763 CGTATCATAACAAATGCTATGCCAC 58.920 40.000 0.05 0.61 0.00 5.01
552 553 5.334802 GCGTATCATAACAAATGCTATGCCA 60.335 40.000 0.05 0.00 30.62 4.92
553 554 5.088739 GCGTATCATAACAAATGCTATGCC 58.911 41.667 0.05 0.00 30.62 4.40
554 555 5.688823 TGCGTATCATAACAAATGCTATGC 58.311 37.500 6.24 6.24 34.83 3.14
555 556 7.355017 ACTTGCGTATCATAACAAATGCTATG 58.645 34.615 0.00 0.00 0.00 2.23
556 557 7.442364 AGACTTGCGTATCATAACAAATGCTAT 59.558 33.333 0.00 0.00 0.00 2.97
557 558 6.761242 AGACTTGCGTATCATAACAAATGCTA 59.239 34.615 0.00 0.00 0.00 3.49
558 559 5.586243 AGACTTGCGTATCATAACAAATGCT 59.414 36.000 0.00 0.00 0.00 3.79
559 560 5.810525 AGACTTGCGTATCATAACAAATGC 58.189 37.500 0.00 0.00 0.00 3.56
560 561 7.962373 TGAAAGACTTGCGTATCATAACAAATG 59.038 33.333 0.00 0.00 0.00 2.32
561 562 8.039603 TGAAAGACTTGCGTATCATAACAAAT 57.960 30.769 0.00 0.00 0.00 2.32
562 563 7.428282 TGAAAGACTTGCGTATCATAACAAA 57.572 32.000 0.00 0.00 0.00 2.83
563 564 7.609760 ATGAAAGACTTGCGTATCATAACAA 57.390 32.000 0.00 0.00 0.00 2.83
564 565 7.549134 AGAATGAAAGACTTGCGTATCATAACA 59.451 33.333 0.82 0.00 0.00 2.41
565 566 7.910304 AGAATGAAAGACTTGCGTATCATAAC 58.090 34.615 0.82 0.31 0.00 1.89
566 567 8.492673 AAGAATGAAAGACTTGCGTATCATAA 57.507 30.769 0.82 0.00 0.00 1.90
567 568 9.764363 ATAAGAATGAAAGACTTGCGTATCATA 57.236 29.630 0.82 0.00 0.00 2.15
568 569 6.992063 AAGAATGAAAGACTTGCGTATCAT 57.008 33.333 0.00 0.00 0.00 2.45
569 570 7.981789 AGATAAGAATGAAAGACTTGCGTATCA 59.018 33.333 0.00 0.00 0.00 2.15
570 571 8.359060 AGATAAGAATGAAAGACTTGCGTATC 57.641 34.615 0.00 0.00 0.00 2.24
571 572 7.981789 TGAGATAAGAATGAAAGACTTGCGTAT 59.018 33.333 0.00 0.00 0.00 3.06
572 573 7.320399 TGAGATAAGAATGAAAGACTTGCGTA 58.680 34.615 0.00 0.00 0.00 4.42
573 574 6.166279 TGAGATAAGAATGAAAGACTTGCGT 58.834 36.000 0.00 0.00 0.00 5.24
574 575 6.653273 TGAGATAAGAATGAAAGACTTGCG 57.347 37.500 0.00 0.00 0.00 4.85
575 576 7.810658 TGTTGAGATAAGAATGAAAGACTTGC 58.189 34.615 0.00 0.00 0.00 4.01
582 583 9.206870 GGCAATTTTGTTGAGATAAGAATGAAA 57.793 29.630 0.00 0.00 0.00 2.69
583 584 8.366401 TGGCAATTTTGTTGAGATAAGAATGAA 58.634 29.630 0.00 0.00 0.00 2.57
584 585 7.894708 TGGCAATTTTGTTGAGATAAGAATGA 58.105 30.769 0.00 0.00 0.00 2.57
585 586 7.816031 ACTGGCAATTTTGTTGAGATAAGAATG 59.184 33.333 0.00 0.00 0.00 2.67
586 587 7.899973 ACTGGCAATTTTGTTGAGATAAGAAT 58.100 30.769 0.00 0.00 0.00 2.40
587 588 7.288810 ACTGGCAATTTTGTTGAGATAAGAA 57.711 32.000 0.00 0.00 0.00 2.52
588 589 6.899393 ACTGGCAATTTTGTTGAGATAAGA 57.101 33.333 0.00 0.00 0.00 2.10
589 590 6.366877 CCAACTGGCAATTTTGTTGAGATAAG 59.633 38.462 15.63 0.00 41.35 1.73
590 591 6.222389 CCAACTGGCAATTTTGTTGAGATAA 58.778 36.000 15.63 0.00 41.35 1.75
591 592 5.782047 CCAACTGGCAATTTTGTTGAGATA 58.218 37.500 15.63 0.00 41.35 1.98
592 593 4.634199 CCAACTGGCAATTTTGTTGAGAT 58.366 39.130 15.63 0.00 41.35 2.75
593 594 4.057406 CCAACTGGCAATTTTGTTGAGA 57.943 40.909 15.63 0.00 41.35 3.27
607 608 2.304092 ACTATCATGCATGCCAACTGG 58.696 47.619 22.25 9.37 38.53 4.00
608 609 3.058432 GCTACTATCATGCATGCCAACTG 60.058 47.826 22.25 11.18 0.00 3.16
609 610 3.144506 GCTACTATCATGCATGCCAACT 58.855 45.455 22.25 6.33 0.00 3.16
610 611 2.227388 GGCTACTATCATGCATGCCAAC 59.773 50.000 22.25 7.01 38.79 3.77
611 612 2.507484 GGCTACTATCATGCATGCCAA 58.493 47.619 22.25 5.34 38.79 4.52
612 613 1.608801 CGGCTACTATCATGCATGCCA 60.609 52.381 22.25 10.55 38.87 4.92
613 614 1.081892 CGGCTACTATCATGCATGCC 58.918 55.000 22.25 16.06 35.94 4.40
614 615 1.462283 CACGGCTACTATCATGCATGC 59.538 52.381 22.25 11.82 0.00 4.06
615 616 3.030668 TCACGGCTACTATCATGCATG 57.969 47.619 21.07 21.07 0.00 4.06
616 617 3.969287 ATCACGGCTACTATCATGCAT 57.031 42.857 0.00 0.00 0.00 3.96
617 618 3.826729 AGTATCACGGCTACTATCATGCA 59.173 43.478 0.00 0.00 0.00 3.96
618 619 4.416620 GAGTATCACGGCTACTATCATGC 58.583 47.826 0.00 0.00 33.17 4.06
619 620 4.142359 GGGAGTATCACGGCTACTATCATG 60.142 50.000 0.00 0.00 36.25 3.07
620 621 4.017808 GGGAGTATCACGGCTACTATCAT 58.982 47.826 0.00 0.00 36.25 2.45
621 622 3.418995 GGGAGTATCACGGCTACTATCA 58.581 50.000 0.00 0.00 36.25 2.15
673 680 1.411977 CCCTAGACAGACCATGCTCTG 59.588 57.143 15.18 15.18 43.06 3.35
674 681 1.786937 CCCTAGACAGACCATGCTCT 58.213 55.000 0.00 0.00 0.00 4.09
679 686 1.786937 CAGAGCCCTAGACAGACCAT 58.213 55.000 0.00 0.00 0.00 3.55
681 688 0.972983 TGCAGAGCCCTAGACAGACC 60.973 60.000 0.00 0.00 0.00 3.85
682 689 1.118838 ATGCAGAGCCCTAGACAGAC 58.881 55.000 0.00 0.00 0.00 3.51
683 690 2.311463 GTATGCAGAGCCCTAGACAGA 58.689 52.381 0.00 0.00 0.00 3.41
685 692 1.032794 CGTATGCAGAGCCCTAGACA 58.967 55.000 0.00 0.00 0.00 3.41
686 693 0.319125 GCGTATGCAGAGCCCTAGAC 60.319 60.000 0.89 0.00 42.15 2.59
687 694 2.041976 GCGTATGCAGAGCCCTAGA 58.958 57.895 0.89 0.00 42.15 2.43
688 695 4.663444 GCGTATGCAGAGCCCTAG 57.337 61.111 0.89 0.00 42.15 3.02
734 741 1.620822 GTTCCTGTCCAAATGTGGCT 58.379 50.000 0.00 0.00 45.54 4.75
737 744 1.535462 GTCGGTTCCTGTCCAAATGTG 59.465 52.381 0.00 0.00 0.00 3.21
739 746 1.535462 GTGTCGGTTCCTGTCCAAATG 59.465 52.381 0.00 0.00 0.00 2.32
746 753 1.227556 GCACAGTGTCGGTTCCTGT 60.228 57.895 1.61 0.00 39.93 4.00
747 754 2.310233 CGCACAGTGTCGGTTCCTG 61.310 63.158 1.61 0.00 0.00 3.86
748 755 2.029073 CGCACAGTGTCGGTTCCT 59.971 61.111 1.61 0.00 0.00 3.36
749 756 2.279918 ACGCACAGTGTCGGTTCC 60.280 61.111 17.78 0.00 0.00 3.62
750 757 3.231501 GACGCACAGTGTCGGTTC 58.768 61.111 17.78 7.09 33.41 3.62
911 926 4.122143 TGACTGATTCGACATGCATGTA 57.878 40.909 31.45 17.41 41.95 2.29
914 929 3.800531 TGATGACTGATTCGACATGCAT 58.199 40.909 0.00 0.00 0.00 3.96
915 930 3.192466 CTGATGACTGATTCGACATGCA 58.808 45.455 0.00 0.00 0.00 3.96
916 931 3.193263 ACTGATGACTGATTCGACATGC 58.807 45.455 0.00 0.00 0.00 4.06
917 932 4.269603 GGAACTGATGACTGATTCGACATG 59.730 45.833 0.00 0.00 0.00 3.21
918 933 4.081476 TGGAACTGATGACTGATTCGACAT 60.081 41.667 0.00 0.00 0.00 3.06
919 934 3.258123 TGGAACTGATGACTGATTCGACA 59.742 43.478 0.00 0.00 0.00 4.35
1058 1093 3.047877 CCGGAAGACGTTGGCACC 61.048 66.667 0.00 0.00 42.24 5.01
1365 1403 1.593209 GGCGACAAACCTCGTGTGA 60.593 57.895 0.00 0.00 35.99 3.58
1452 1490 4.008933 AGCGACGCCAGGAGCTTT 62.009 61.111 17.79 0.00 40.39 3.51
2203 2436 2.497675 ACTGCATATAGTAGGGCATCGG 59.502 50.000 0.00 0.00 35.45 4.18
2301 2539 7.819500 TGGGTATGTAGTAGTCCAGTAATACT 58.180 38.462 0.00 0.00 34.29 2.12
2387 2625 8.339714 GGCATGTGCTTTTATTTTACTCGTATA 58.660 33.333 4.84 0.00 41.70 1.47
2388 2626 7.148154 TGGCATGTGCTTTTATTTTACTCGTAT 60.148 33.333 4.84 0.00 41.70 3.06
2407 2645 1.606668 CGTTTGTAACAGGTGGCATGT 59.393 47.619 0.00 0.00 0.00 3.21
2494 2739 4.771903 TGCAGGTATAGCAAATCCGTTAA 58.228 39.130 4.48 0.00 39.39 2.01
2510 2755 4.202441 AGAATAATCGATTGCTTGCAGGT 58.798 39.130 20.87 0.00 0.00 4.00
2514 2759 4.024893 TCCGAAGAATAATCGATTGCTTGC 60.025 41.667 20.87 12.47 42.76 4.01
2523 2768 9.322776 GAAATTGATTGATCCGAAGAATAATCG 57.677 33.333 0.00 0.00 39.92 3.34
2539 2784 3.680937 ACGCATTGGCAAGAAATTGATTG 59.319 39.130 5.96 0.00 41.24 2.67
2564 2809 0.456995 GTCTCGGTCTCAAAGCTCCG 60.457 60.000 2.99 2.99 43.65 4.63
2580 2825 1.564348 AGGAATGCCAAATACCGGTCT 59.436 47.619 12.40 0.00 36.29 3.85
2584 2829 2.223572 GCTTGAGGAATGCCAAATACCG 60.224 50.000 0.00 0.00 36.29 4.02
2589 2834 3.324268 TCAATTGCTTGAGGAATGCCAAA 59.676 39.130 0.00 0.00 36.46 3.28
2593 2838 6.370718 AGAAAAATCAATTGCTTGAGGAATGC 59.629 34.615 0.00 0.00 44.32 3.56
2601 2846 8.090250 TGATCCAAAGAAAAATCAATTGCTTG 57.910 30.769 0.00 0.00 0.00 4.01
2620 2865 5.943349 AGAATGGCAAATCAATTGATCCA 57.057 34.783 22.71 22.71 41.85 3.41
2634 2879 9.929180 GTTGATGACTAGTATAATAGAATGGCA 57.071 33.333 13.89 0.00 0.00 4.92
2669 2914 3.977427 TGTATAATGCTAGACCGTGCAG 58.023 45.455 0.00 0.00 42.74 4.41
2740 2991 2.942376 TCTGTCAATGTTTCACGTTGCT 59.058 40.909 4.26 0.00 43.05 3.91
2752 3003 6.015504 CGTCGTCCTAATTTTTCTGTCAATG 58.984 40.000 0.00 0.00 0.00 2.82
2766 3017 2.093890 TGGCAGTTATCGTCGTCCTAA 58.906 47.619 0.00 0.00 0.00 2.69
2767 3018 1.402968 GTGGCAGTTATCGTCGTCCTA 59.597 52.381 0.00 0.00 0.00 2.94
2864 3118 1.153289 CGGGCTGTAGCTGCATTCT 60.153 57.895 4.51 0.00 41.70 2.40
2866 3120 2.825836 GCGGGCTGTAGCTGCATT 60.826 61.111 4.51 0.00 40.35 3.56
2884 3139 4.666532 GTGCAGCACACCGAACGC 62.667 66.667 21.22 0.00 44.02 4.84
2998 3271 1.540367 AAGGGAATCGTGGGGGACA 60.540 57.895 0.00 0.00 0.00 4.02
3015 3289 2.335316 ACTGCAGTTAAACGGACCAA 57.665 45.000 15.25 0.00 0.00 3.67
3120 3435 2.488937 CCATACATGACAACAGCTGCAA 59.511 45.455 15.27 0.00 0.00 4.08
3132 3447 4.904853 TGTAATAGGCCAGACCATACATGA 59.095 41.667 5.01 0.00 43.14 3.07
3147 3462 6.698008 TCAAATCATGGCAACTGTAATAGG 57.302 37.500 0.00 0.00 37.61 2.57
3151 3466 6.815089 AGTTTTCAAATCATGGCAACTGTAA 58.185 32.000 0.00 0.00 33.19 2.41
3203 3519 2.276732 AGTGCTACATGGCAACTGTT 57.723 45.000 0.00 0.00 44.18 3.16
3227 3543 4.874970 ACATGTTCTTTTGCCATGTCTTC 58.125 39.130 0.00 0.00 44.27 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.