Multiple sequence alignment - TraesCS3D01G467500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G467500 chr3D 100.000 3212 0 0 1 3212 570327433 570330644 0.000000e+00 5932.0
1 TraesCS3D01G467500 chr3D 95.015 1625 61 11 980 2599 570281021 570282630 0.000000e+00 2534.0
2 TraesCS3D01G467500 chr3D 90.234 1495 114 20 732 2200 570379296 570380784 0.000000e+00 1923.0
3 TraesCS3D01G467500 chr3D 90.000 1100 103 3 1088 2183 570311115 570312211 0.000000e+00 1415.0
4 TraesCS3D01G467500 chr3D 83.715 1222 155 25 983 2169 570393668 570394880 0.000000e+00 1114.0
5 TraesCS3D01G467500 chr3D 79.424 1215 211 26 998 2185 570496388 570495186 0.000000e+00 822.0
6 TraesCS3D01G467500 chr3D 78.254 1237 189 47 997 2184 520191924 520190719 0.000000e+00 721.0
7 TraesCS3D01G467500 chr3D 77.060 1238 225 37 997 2185 570559184 570560411 0.000000e+00 658.0
8 TraesCS3D01G467500 chr3D 88.619 536 46 10 2680 3209 570282635 570283161 3.490000e-179 638.0
9 TraesCS3D01G467500 chr3D 83.240 537 73 14 1014 1540 570401329 570400800 8.060000e-131 477.0
10 TraesCS3D01G467500 chr3D 84.211 152 18 5 390 536 511454472 511454322 3.340000e-30 143.0
11 TraesCS3D01G467500 chr3D 89.815 108 10 1 3104 3210 324612788 324612681 1.550000e-28 137.0
12 TraesCS3D01G467500 chr3D 77.570 214 37 11 2735 2943 24635517 24635724 5.630000e-23 119.0
13 TraesCS3D01G467500 chr3A 94.922 1418 54 10 983 2389 703170771 703172181 0.000000e+00 2204.0
14 TraesCS3D01G467500 chr3A 88.882 1583 116 21 742 2269 703203532 703205109 0.000000e+00 1893.0
15 TraesCS3D01G467500 chr3A 83.265 1225 155 30 983 2169 703270265 703271477 0.000000e+00 1081.0
16 TraesCS3D01G467500 chr3A 84.827 837 73 14 2380 3212 703173902 703174688 0.000000e+00 793.0
17 TraesCS3D01G467500 chr3A 76.812 1242 224 43 997 2185 703395149 703396379 9.720000e-180 640.0
18 TraesCS3D01G467500 chr3A 91.667 108 8 1 3104 3210 434067356 434067463 7.180000e-32 148.0
19 TraesCS3D01G467500 chr3A 92.683 41 3 0 667 707 703203485 703203525 3.460000e-05 60.2
20 TraesCS3D01G467500 chr3B 92.654 1511 74 17 983 2488 757472855 757474333 0.000000e+00 2141.0
21 TraesCS3D01G467500 chr3B 88.995 1472 124 22 737 2200 757707846 757709287 0.000000e+00 1786.0
22 TraesCS3D01G467500 chr3B 88.586 1209 121 9 982 2189 757498293 757499485 0.000000e+00 1452.0
23 TraesCS3D01G467500 chr3B 96.875 32 1 0 2693 2724 595364287 595364256 2.000000e-03 54.7
24 TraesCS3D01G467500 chr7B 92.562 121 9 0 2760 2880 122867087 122866967 1.180000e-39 174.0
25 TraesCS3D01G467500 chr7B 82.692 104 16 1 149 252 656431014 656430913 1.230000e-14 91.6
26 TraesCS3D01G467500 chr5B 79.537 259 39 12 2746 2999 616730784 616730535 4.260000e-39 172.0
27 TraesCS3D01G467500 chr5B 77.397 146 29 4 152 295 261184411 261184268 2.050000e-12 84.2
28 TraesCS3D01G467500 chr6B 77.019 322 57 17 2748 3063 647174071 647174381 5.510000e-38 169.0
29 TraesCS3D01G467500 chr6B 84.810 79 10 2 199 276 697440818 697440895 9.550000e-11 78.7
30 TraesCS3D01G467500 chr6B 83.333 78 10 2 244 321 8599822 8599748 5.750000e-08 69.4
31 TraesCS3D01G467500 chr6B 96.970 33 0 1 2690 2721 686826631 686826663 2.000000e-03 54.7
32 TraesCS3D01G467500 chr4B 79.412 238 42 6 2 236 136187069 136187302 9.220000e-36 161.0
33 TraesCS3D01G467500 chr4B 82.857 140 20 4 379 517 614054115 614054251 4.350000e-24 122.0
34 TraesCS3D01G467500 chr4B 76.549 226 35 17 2722 2943 519408644 519408855 1.220000e-19 108.0
35 TraesCS3D01G467500 chr4B 100.000 29 0 0 2693 2721 527672938 527672910 2.000000e-03 54.7
36 TraesCS3D01G467500 chrUn 92.523 107 7 1 3105 3210 351921697 351921591 5.550000e-33 152.0
37 TraesCS3D01G467500 chrUn 86.022 93 12 1 149 241 98200125 98200034 7.330000e-17 99.0
38 TraesCS3D01G467500 chrUn 76.871 147 30 4 152 295 358062214 358062359 2.660000e-11 80.5
39 TraesCS3D01G467500 chrUn 100.000 29 0 0 2693 2721 87092062 87092090 2.000000e-03 54.7
40 TraesCS3D01G467500 chr2D 90.741 108 9 1 3104 3210 560994221 560994114 3.340000e-30 143.0
41 TraesCS3D01G467500 chr2D 84.397 141 17 5 379 518 629570440 629570576 2.010000e-27 134.0
42 TraesCS3D01G467500 chr2D 81.944 144 19 7 379 518 19215674 19215534 7.280000e-22 115.0
43 TraesCS3D01G467500 chr2D 96.875 32 1 0 2693 2724 423863984 423863953 2.000000e-03 54.7
44 TraesCS3D01G467500 chr5A 90.566 106 9 1 3106 3210 540389962 540390067 4.320000e-29 139.0
45 TraesCS3D01G467500 chr5A 89.623 106 10 1 3106 3210 68810390 68810495 2.010000e-27 134.0
46 TraesCS3D01G467500 chr1A 89.908 109 9 2 3104 3210 416544852 416544744 4.320000e-29 139.0
47 TraesCS3D01G467500 chr1A 100.000 29 0 0 2693 2721 568638375 568638347 2.000000e-03 54.7
48 TraesCS3D01G467500 chr7D 83.099 142 21 3 379 518 159086437 159086577 3.360000e-25 126.0
49 TraesCS3D01G467500 chr7D 83.459 133 18 4 379 510 353912206 353912335 1.570000e-23 121.0
50 TraesCS3D01G467500 chr7D 76.423 246 40 17 2741 2979 115084321 115084087 2.020000e-22 117.0
51 TraesCS3D01G467500 chr2A 75.735 272 55 11 2737 3006 512221516 512221778 3.360000e-25 126.0
52 TraesCS3D01G467500 chr6D 82.639 144 20 5 378 518 69903847 69903988 4.350000e-24 122.0
53 TraesCS3D01G467500 chr2B 83.704 135 17 4 379 510 789627322 789627190 4.350000e-24 122.0
54 TraesCS3D01G467500 chr2B 76.871 147 30 4 152 295 777955502 777955357 2.660000e-11 80.5
55 TraesCS3D01G467500 chr2B 79.808 104 19 2 176 277 778010934 778010831 1.240000e-09 75.0
56 TraesCS3D01G467500 chr2B 77.344 128 26 3 152 278 26562797 26562922 4.440000e-09 73.1
57 TraesCS3D01G467500 chr2B 80.899 89 14 2 243 329 29998087 29998174 2.070000e-07 67.6
58 TraesCS3D01G467500 chr4D 81.818 143 20 5 379 518 364588860 364588999 7.280000e-22 115.0
59 TraesCS3D01G467500 chr1D 76.419 229 36 17 2722 2946 339297514 339297300 1.220000e-19 108.0
60 TraesCS3D01G467500 chr1D 85.393 89 12 1 149 236 391235823 391235735 1.230000e-14 91.6
61 TraesCS3D01G467500 chr1D 100.000 29 0 0 2693 2721 474283026 474282998 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G467500 chr3D 570327433 570330644 3211 False 5932.0 5932 100.0000 1 3212 1 chr3D.!!$F3 3211
1 TraesCS3D01G467500 chr3D 570379296 570380784 1488 False 1923.0 1923 90.2340 732 2200 1 chr3D.!!$F4 1468
2 TraesCS3D01G467500 chr3D 570281021 570283161 2140 False 1586.0 2534 91.8170 980 3209 2 chr3D.!!$F7 2229
3 TraesCS3D01G467500 chr3D 570311115 570312211 1096 False 1415.0 1415 90.0000 1088 2183 1 chr3D.!!$F2 1095
4 TraesCS3D01G467500 chr3D 570393668 570394880 1212 False 1114.0 1114 83.7150 983 2169 1 chr3D.!!$F5 1186
5 TraesCS3D01G467500 chr3D 570495186 570496388 1202 True 822.0 822 79.4240 998 2185 1 chr3D.!!$R5 1187
6 TraesCS3D01G467500 chr3D 520190719 520191924 1205 True 721.0 721 78.2540 997 2184 1 chr3D.!!$R3 1187
7 TraesCS3D01G467500 chr3D 570559184 570560411 1227 False 658.0 658 77.0600 997 2185 1 chr3D.!!$F6 1188
8 TraesCS3D01G467500 chr3D 570400800 570401329 529 True 477.0 477 83.2400 1014 1540 1 chr3D.!!$R4 526
9 TraesCS3D01G467500 chr3A 703170771 703174688 3917 False 1498.5 2204 89.8745 983 3212 2 chr3A.!!$F4 2229
10 TraesCS3D01G467500 chr3A 703270265 703271477 1212 False 1081.0 1081 83.2650 983 2169 1 chr3A.!!$F2 1186
11 TraesCS3D01G467500 chr3A 703203485 703205109 1624 False 976.6 1893 90.7825 667 2269 2 chr3A.!!$F5 1602
12 TraesCS3D01G467500 chr3A 703395149 703396379 1230 False 640.0 640 76.8120 997 2185 1 chr3A.!!$F3 1188
13 TraesCS3D01G467500 chr3B 757472855 757474333 1478 False 2141.0 2141 92.6540 983 2488 1 chr3B.!!$F1 1505
14 TraesCS3D01G467500 chr3B 757707846 757709287 1441 False 1786.0 1786 88.9950 737 2200 1 chr3B.!!$F3 1463
15 TraesCS3D01G467500 chr3B 757498293 757499485 1192 False 1452.0 1452 88.5860 982 2189 1 chr3B.!!$F2 1207

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
543 544 0.0297 GAACAAAACCGTTCGGTGGG 59.97 55.0 17.59 12.02 38.7 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2539 4447 0.03213 GCAATCGCATAGGACGAGGA 59.968 55.0 0.0 0.0 43.74 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.365408 AATCTCGAACCGTTCTCACC 57.635 50.000 9.55 0.00 0.00 4.02
22 23 1.254026 ATCTCGAACCGTTCTCACCA 58.746 50.000 9.55 0.00 0.00 4.17
23 24 1.254026 TCTCGAACCGTTCTCACCAT 58.746 50.000 9.55 0.00 0.00 3.55
24 25 1.616865 TCTCGAACCGTTCTCACCATT 59.383 47.619 9.55 0.00 0.00 3.16
25 26 1.726791 CTCGAACCGTTCTCACCATTG 59.273 52.381 9.55 0.00 0.00 2.82
26 27 0.796312 CGAACCGTTCTCACCATTGG 59.204 55.000 9.55 0.00 0.00 3.16
27 28 1.606994 CGAACCGTTCTCACCATTGGA 60.607 52.381 10.37 0.00 0.00 3.53
28 29 2.711542 GAACCGTTCTCACCATTGGAT 58.288 47.619 10.37 0.00 0.00 3.41
29 30 2.879103 ACCGTTCTCACCATTGGATT 57.121 45.000 10.37 0.00 0.00 3.01
30 31 2.711542 ACCGTTCTCACCATTGGATTC 58.288 47.619 10.37 0.00 0.00 2.52
31 32 2.017049 CCGTTCTCACCATTGGATTCC 58.983 52.381 10.37 0.00 0.00 3.01
32 33 2.356125 CCGTTCTCACCATTGGATTCCT 60.356 50.000 10.37 0.00 0.00 3.36
33 34 2.939103 CGTTCTCACCATTGGATTCCTC 59.061 50.000 10.37 0.00 0.00 3.71
34 35 2.939103 GTTCTCACCATTGGATTCCTCG 59.061 50.000 10.37 0.00 0.00 4.63
35 36 2.187958 TCTCACCATTGGATTCCTCGT 58.812 47.619 10.37 0.00 0.00 4.18
36 37 3.371034 TCTCACCATTGGATTCCTCGTA 58.629 45.455 10.37 0.00 0.00 3.43
37 38 3.967326 TCTCACCATTGGATTCCTCGTAT 59.033 43.478 10.37 0.00 0.00 3.06
38 39 4.408921 TCTCACCATTGGATTCCTCGTATT 59.591 41.667 10.37 0.00 0.00 1.89
39 40 4.450976 TCACCATTGGATTCCTCGTATTG 58.549 43.478 10.37 0.00 0.00 1.90
40 41 4.163268 TCACCATTGGATTCCTCGTATTGA 59.837 41.667 10.37 0.00 0.00 2.57
41 42 4.512944 CACCATTGGATTCCTCGTATTGAG 59.487 45.833 10.37 0.00 44.83 3.02
85 86 9.342308 TCATATTGATAGGTTTTGATGAAGTCC 57.658 33.333 0.00 0.00 0.00 3.85
86 87 9.347240 CATATTGATAGGTTTTGATGAAGTCCT 57.653 33.333 0.00 0.00 0.00 3.85
87 88 7.872113 ATTGATAGGTTTTGATGAAGTCCTC 57.128 36.000 0.00 0.00 0.00 3.71
88 89 6.627087 TGATAGGTTTTGATGAAGTCCTCT 57.373 37.500 0.00 0.00 0.00 3.69
89 90 6.409704 TGATAGGTTTTGATGAAGTCCTCTG 58.590 40.000 0.00 0.00 0.00 3.35
90 91 4.713792 AGGTTTTGATGAAGTCCTCTGT 57.286 40.909 0.00 0.00 0.00 3.41
91 92 4.646572 AGGTTTTGATGAAGTCCTCTGTC 58.353 43.478 0.00 0.00 0.00 3.51
92 93 4.103153 AGGTTTTGATGAAGTCCTCTGTCA 59.897 41.667 0.00 0.00 0.00 3.58
93 94 4.214332 GGTTTTGATGAAGTCCTCTGTCAC 59.786 45.833 0.00 0.00 0.00 3.67
94 95 3.303881 TTGATGAAGTCCTCTGTCACG 57.696 47.619 0.00 0.00 0.00 4.35
95 96 2.514803 TGATGAAGTCCTCTGTCACGA 58.485 47.619 0.00 0.00 0.00 4.35
96 97 2.890945 TGATGAAGTCCTCTGTCACGAA 59.109 45.455 0.00 0.00 0.00 3.85
97 98 3.320826 TGATGAAGTCCTCTGTCACGAAA 59.679 43.478 0.00 0.00 0.00 3.46
98 99 3.812156 TGAAGTCCTCTGTCACGAAAA 57.188 42.857 0.00 0.00 0.00 2.29
99 100 4.131649 TGAAGTCCTCTGTCACGAAAAA 57.868 40.909 0.00 0.00 0.00 1.94
117 118 4.388378 AAAAATGGACGAAAAACCCGAA 57.612 36.364 0.00 0.00 0.00 4.30
118 119 4.594123 AAAATGGACGAAAAACCCGAAT 57.406 36.364 0.00 0.00 0.00 3.34
119 120 3.842732 AATGGACGAAAAACCCGAATC 57.157 42.857 0.00 0.00 0.00 2.52
120 121 1.149987 TGGACGAAAAACCCGAATCG 58.850 50.000 0.00 0.00 40.90 3.34
121 122 1.270199 TGGACGAAAAACCCGAATCGA 60.270 47.619 3.36 0.00 38.59 3.59
122 123 1.392510 GGACGAAAAACCCGAATCGAG 59.607 52.381 3.36 0.00 38.59 4.04
123 124 2.331194 GACGAAAAACCCGAATCGAGA 58.669 47.619 3.36 0.00 38.59 4.04
124 125 2.334838 ACGAAAAACCCGAATCGAGAG 58.665 47.619 3.36 0.00 38.59 3.20
125 126 1.060698 CGAAAAACCCGAATCGAGAGC 59.939 52.381 3.36 0.00 37.48 4.09
126 127 1.397343 GAAAAACCCGAATCGAGAGCC 59.603 52.381 3.36 0.00 0.00 4.70
127 128 0.613777 AAAACCCGAATCGAGAGCCT 59.386 50.000 3.36 0.00 0.00 4.58
128 129 0.175989 AAACCCGAATCGAGAGCCTC 59.824 55.000 3.36 0.00 0.00 4.70
129 130 0.684805 AACCCGAATCGAGAGCCTCT 60.685 55.000 3.36 0.00 0.00 3.69
130 131 0.684805 ACCCGAATCGAGAGCCTCTT 60.685 55.000 3.36 0.00 0.00 2.85
131 132 0.461961 CCCGAATCGAGAGCCTCTTT 59.538 55.000 3.36 0.00 0.00 2.52
132 133 1.134670 CCCGAATCGAGAGCCTCTTTT 60.135 52.381 3.36 0.00 0.00 2.27
133 134 2.622436 CCGAATCGAGAGCCTCTTTTT 58.378 47.619 3.36 0.00 0.00 1.94
149 150 0.669619 TTTTTCCCGTTCCGAAAGCC 59.330 50.000 0.00 0.00 31.22 4.35
150 151 1.508808 TTTTCCCGTTCCGAAAGCCG 61.509 55.000 0.00 0.00 31.22 5.52
151 152 2.663423 TTTCCCGTTCCGAAAGCCGT 62.663 55.000 0.00 0.00 36.31 5.68
152 153 2.663423 TTCCCGTTCCGAAAGCCGTT 62.663 55.000 0.00 0.00 36.31 4.44
153 154 2.674084 CCCGTTCCGAAAGCCGTTC 61.674 63.158 0.00 0.00 36.31 3.95
154 155 1.666872 CCGTTCCGAAAGCCGTTCT 60.667 57.895 0.00 0.00 36.31 3.01
155 156 1.623973 CCGTTCCGAAAGCCGTTCTC 61.624 60.000 0.00 0.00 36.31 2.87
156 157 1.779683 GTTCCGAAAGCCGTTCTCG 59.220 57.895 0.00 0.00 36.31 4.04
157 158 0.665369 GTTCCGAAAGCCGTTCTCGA 60.665 55.000 0.00 0.00 39.71 4.04
158 159 0.388134 TTCCGAAAGCCGTTCTCGAG 60.388 55.000 5.93 5.93 39.71 4.04
159 160 1.211969 CCGAAAGCCGTTCTCGAGA 59.788 57.895 12.08 12.08 39.71 4.04
160 161 1.071567 CCGAAAGCCGTTCTCGAGAC 61.072 60.000 16.36 9.64 39.71 3.36
161 162 1.396543 CGAAAGCCGTTCTCGAGACG 61.397 60.000 16.36 20.24 39.71 4.18
162 163 1.675524 GAAAGCCGTTCTCGAGACGC 61.676 60.000 16.36 16.61 39.71 5.19
163 164 2.416244 AAAGCCGTTCTCGAGACGCA 62.416 55.000 16.36 0.00 39.71 5.24
164 165 2.202623 GCCGTTCTCGAGACGCAT 60.203 61.111 16.36 0.00 39.71 4.73
165 166 2.508891 GCCGTTCTCGAGACGCATG 61.509 63.158 16.36 6.22 39.71 4.06
166 167 1.874019 CCGTTCTCGAGACGCATGG 60.874 63.158 16.36 12.01 39.71 3.66
167 168 2.508891 CGTTCTCGAGACGCATGGC 61.509 63.158 16.36 0.00 39.71 4.40
168 169 2.167861 GTTCTCGAGACGCATGGCC 61.168 63.158 16.36 0.00 0.00 5.36
169 170 3.699955 TTCTCGAGACGCATGGCCG 62.700 63.158 16.36 0.00 0.00 6.13
170 171 4.498520 CTCGAGACGCATGGCCGT 62.499 66.667 6.58 0.00 45.30 5.68
171 172 4.794439 TCGAGACGCATGGCCGTG 62.794 66.667 21.33 21.33 42.24 4.94
173 174 3.188786 GAGACGCATGGCCGTGTC 61.189 66.667 25.67 19.66 44.92 3.67
175 176 3.188786 GACGCATGGCCGTGTCTC 61.189 66.667 25.67 15.99 42.24 3.36
176 177 3.649277 GACGCATGGCCGTGTCTCT 62.649 63.158 25.67 6.20 42.24 3.10
177 178 2.887568 CGCATGGCCGTGTCTCTC 60.888 66.667 25.67 8.07 0.00 3.20
178 179 2.265739 GCATGGCCGTGTCTCTCA 59.734 61.111 25.67 0.00 0.00 3.27
179 180 1.153289 GCATGGCCGTGTCTCTCAT 60.153 57.895 25.67 0.00 0.00 2.90
180 181 1.434622 GCATGGCCGTGTCTCTCATG 61.435 60.000 25.67 8.13 38.46 3.07
190 191 5.957910 CGTGTCTCTCATGGAAGTAAATC 57.042 43.478 0.00 0.00 0.00 2.17
191 192 4.806247 CGTGTCTCTCATGGAAGTAAATCC 59.194 45.833 0.00 0.00 40.10 3.01
192 193 4.806247 GTGTCTCTCATGGAAGTAAATCCG 59.194 45.833 0.00 0.00 42.76 4.18
193 194 4.466370 TGTCTCTCATGGAAGTAAATCCGT 59.534 41.667 0.00 0.00 42.76 4.69
198 199 2.396590 TGGAAGTAAATCCGTGGCTC 57.603 50.000 0.00 0.00 42.76 4.70
199 200 1.906574 TGGAAGTAAATCCGTGGCTCT 59.093 47.619 0.00 0.00 42.76 4.09
200 201 2.093658 TGGAAGTAAATCCGTGGCTCTC 60.094 50.000 0.00 0.00 42.76 3.20
201 202 2.194271 GAAGTAAATCCGTGGCTCTCG 58.806 52.381 0.00 0.00 0.00 4.04
202 203 0.179108 AGTAAATCCGTGGCTCTCGC 60.179 55.000 0.00 0.00 0.00 5.03
219 220 3.916439 CGAAAGCAAAACCGTGCC 58.084 55.556 0.00 0.00 46.14 5.01
220 221 1.358759 CGAAAGCAAAACCGTGCCT 59.641 52.632 0.00 0.00 46.14 4.75
221 222 0.660300 CGAAAGCAAAACCGTGCCTC 60.660 55.000 0.00 0.00 46.14 4.70
222 223 0.668535 GAAAGCAAAACCGTGCCTCT 59.331 50.000 0.00 0.00 46.14 3.69
223 224 0.668535 AAAGCAAAACCGTGCCTCTC 59.331 50.000 0.00 0.00 46.14 3.20
224 225 1.507141 AAGCAAAACCGTGCCTCTCG 61.507 55.000 0.00 0.00 46.14 4.04
225 226 2.251642 GCAAAACCGTGCCTCTCGT 61.252 57.895 0.00 0.00 38.66 4.18
226 227 1.569493 CAAAACCGTGCCTCTCGTG 59.431 57.895 0.00 0.00 0.00 4.35
227 228 0.878523 CAAAACCGTGCCTCTCGTGA 60.879 55.000 0.00 0.00 0.00 4.35
228 229 0.179067 AAAACCGTGCCTCTCGTGAA 60.179 50.000 0.00 0.00 0.00 3.18
229 230 0.179067 AAACCGTGCCTCTCGTGAAA 60.179 50.000 0.00 0.00 0.00 2.69
230 231 0.600255 AACCGTGCCTCTCGTGAAAG 60.600 55.000 0.00 0.00 0.00 2.62
231 232 1.738099 CCGTGCCTCTCGTGAAAGG 60.738 63.158 0.00 0.00 35.65 3.11
232 233 1.738099 CGTGCCTCTCGTGAAAGGG 60.738 63.158 0.00 0.00 32.98 3.95
233 234 1.671742 GTGCCTCTCGTGAAAGGGA 59.328 57.895 0.00 0.00 32.98 4.20
234 235 0.034896 GTGCCTCTCGTGAAAGGGAA 59.965 55.000 0.00 0.00 34.51 3.97
235 236 0.762418 TGCCTCTCGTGAAAGGGAAA 59.238 50.000 0.00 0.00 32.98 3.13
236 237 1.351017 TGCCTCTCGTGAAAGGGAAAT 59.649 47.619 0.00 0.00 32.98 2.17
237 238 2.569853 TGCCTCTCGTGAAAGGGAAATA 59.430 45.455 0.00 0.00 32.98 1.40
238 239 3.008594 TGCCTCTCGTGAAAGGGAAATAA 59.991 43.478 0.00 0.00 32.98 1.40
239 240 3.374367 GCCTCTCGTGAAAGGGAAATAAC 59.626 47.826 0.00 0.00 32.98 1.89
240 241 4.575885 CCTCTCGTGAAAGGGAAATAACA 58.424 43.478 0.00 0.00 0.00 2.41
241 242 4.392138 CCTCTCGTGAAAGGGAAATAACAC 59.608 45.833 0.00 0.00 0.00 3.32
242 243 4.963373 TCTCGTGAAAGGGAAATAACACA 58.037 39.130 0.00 0.00 0.00 3.72
243 244 5.556915 TCTCGTGAAAGGGAAATAACACAT 58.443 37.500 0.00 0.00 0.00 3.21
244 245 6.001460 TCTCGTGAAAGGGAAATAACACATT 58.999 36.000 0.00 0.00 0.00 2.71
245 246 6.488683 TCTCGTGAAAGGGAAATAACACATTT 59.511 34.615 0.00 0.00 0.00 2.32
246 247 6.442952 TCGTGAAAGGGAAATAACACATTTG 58.557 36.000 0.00 0.00 0.00 2.32
247 248 6.039941 TCGTGAAAGGGAAATAACACATTTGT 59.960 34.615 0.00 0.00 37.67 2.83
248 249 6.362283 CGTGAAAGGGAAATAACACATTTGTC 59.638 38.462 0.00 0.00 33.55 3.18
249 250 7.433680 GTGAAAGGGAAATAACACATTTGTCT 58.566 34.615 0.00 0.00 33.55 3.41
250 251 7.926018 GTGAAAGGGAAATAACACATTTGTCTT 59.074 33.333 0.00 0.00 33.55 3.01
251 252 8.482128 TGAAAGGGAAATAACACATTTGTCTTT 58.518 29.630 0.00 0.00 33.55 2.52
252 253 8.661352 AAAGGGAAATAACACATTTGTCTTTG 57.339 30.769 0.00 0.00 33.55 2.77
253 254 7.360113 AGGGAAATAACACATTTGTCTTTGT 57.640 32.000 0.00 0.00 33.55 2.83
254 255 7.791029 AGGGAAATAACACATTTGTCTTTGTT 58.209 30.769 0.00 0.00 33.55 2.83
255 256 8.264347 AGGGAAATAACACATTTGTCTTTGTTT 58.736 29.630 0.00 0.00 33.55 2.83
256 257 8.888716 GGGAAATAACACATTTGTCTTTGTTTT 58.111 29.630 0.00 0.00 33.55 2.43
260 261 9.665719 AATAACACATTTGTCTTTGTTTTTCCT 57.334 25.926 0.00 0.00 33.55 3.36
261 262 7.977789 AACACATTTGTCTTTGTTTTTCCTT 57.022 28.000 0.00 0.00 33.55 3.36
262 263 7.977789 ACACATTTGTCTTTGTTTTTCCTTT 57.022 28.000 0.00 0.00 0.00 3.11
263 264 8.389779 ACACATTTGTCTTTGTTTTTCCTTTT 57.610 26.923 0.00 0.00 0.00 2.27
264 265 8.288913 ACACATTTGTCTTTGTTTTTCCTTTTG 58.711 29.630 0.00 0.00 0.00 2.44
265 266 8.288913 CACATTTGTCTTTGTTTTTCCTTTTGT 58.711 29.630 0.00 0.00 0.00 2.83
266 267 8.288913 ACATTTGTCTTTGTTTTTCCTTTTGTG 58.711 29.630 0.00 0.00 0.00 3.33
267 268 8.502387 CATTTGTCTTTGTTTTTCCTTTTGTGA 58.498 29.630 0.00 0.00 0.00 3.58
268 269 7.650834 TTGTCTTTGTTTTTCCTTTTGTGAG 57.349 32.000 0.00 0.00 0.00 3.51
269 270 6.987386 TGTCTTTGTTTTTCCTTTTGTGAGA 58.013 32.000 0.00 0.00 0.00 3.27
270 271 7.090173 TGTCTTTGTTTTTCCTTTTGTGAGAG 58.910 34.615 0.00 0.00 0.00 3.20
271 272 6.531594 GTCTTTGTTTTTCCTTTTGTGAGAGG 59.468 38.462 0.00 0.00 0.00 3.69
272 273 4.385358 TGTTTTTCCTTTTGTGAGAGGC 57.615 40.909 0.00 0.00 32.93 4.70
273 274 3.766591 TGTTTTTCCTTTTGTGAGAGGCA 59.233 39.130 0.00 0.00 32.93 4.75
274 275 4.405358 TGTTTTTCCTTTTGTGAGAGGCAT 59.595 37.500 0.00 0.00 32.93 4.40
275 276 4.589216 TTTTCCTTTTGTGAGAGGCATG 57.411 40.909 0.00 0.00 32.93 4.06
276 277 2.205022 TCCTTTTGTGAGAGGCATGG 57.795 50.000 0.00 0.00 32.93 3.66
277 278 1.425066 TCCTTTTGTGAGAGGCATGGT 59.575 47.619 0.00 0.00 32.93 3.55
278 279 2.158475 TCCTTTTGTGAGAGGCATGGTT 60.158 45.455 0.00 0.00 32.93 3.67
279 280 2.629617 CCTTTTGTGAGAGGCATGGTTT 59.370 45.455 0.00 0.00 0.00 3.27
280 281 3.070015 CCTTTTGTGAGAGGCATGGTTTT 59.930 43.478 0.00 0.00 0.00 2.43
281 282 3.731652 TTTGTGAGAGGCATGGTTTTG 57.268 42.857 0.00 0.00 0.00 2.44
282 283 0.961019 TGTGAGAGGCATGGTTTTGC 59.039 50.000 0.00 0.00 42.01 3.68
283 284 0.961019 GTGAGAGGCATGGTTTTGCA 59.039 50.000 0.00 0.00 44.59 4.08
284 285 1.547372 GTGAGAGGCATGGTTTTGCAT 59.453 47.619 0.00 0.00 44.59 3.96
286 287 3.746900 GAGGCATGGTTTTGCATCC 57.253 52.632 0.00 0.00 45.18 3.51
287 288 0.179129 GAGGCATGGTTTTGCATCCG 60.179 55.000 0.00 0.00 45.18 4.18
288 289 0.899717 AGGCATGGTTTTGCATCCGT 60.900 50.000 0.00 0.00 44.59 4.69
289 290 0.737019 GGCATGGTTTTGCATCCGTG 60.737 55.000 16.15 16.15 44.59 4.94
290 291 0.243365 GCATGGTTTTGCATCCGTGA 59.757 50.000 21.51 0.00 41.65 4.35
291 292 1.336702 GCATGGTTTTGCATCCGTGAA 60.337 47.619 21.51 0.00 41.65 3.18
292 293 2.865670 GCATGGTTTTGCATCCGTGAAA 60.866 45.455 21.51 2.82 41.65 2.69
293 294 2.791383 TGGTTTTGCATCCGTGAAAG 57.209 45.000 0.00 0.00 0.00 2.62
294 295 1.269517 TGGTTTTGCATCCGTGAAAGC 60.270 47.619 0.00 0.00 0.00 3.51
295 296 1.418373 GTTTTGCATCCGTGAAAGCC 58.582 50.000 0.00 0.00 0.00 4.35
296 297 1.035923 TTTTGCATCCGTGAAAGCCA 58.964 45.000 0.00 0.00 0.00 4.75
297 298 0.313672 TTTGCATCCGTGAAAGCCAC 59.686 50.000 0.00 0.00 42.30 5.01
306 307 2.422276 GTGAAAGCCACGATTTTGCT 57.578 45.000 0.00 0.00 35.86 3.91
307 308 2.742774 GTGAAAGCCACGATTTTGCTT 58.257 42.857 0.00 0.00 46.68 3.91
311 312 1.866601 AAGCCACGATTTTGCTTTTGC 59.133 42.857 0.00 0.00 42.37 3.68
321 322 4.404654 GCTTTTGCGGGAGGTGCG 62.405 66.667 0.00 0.00 34.86 5.34
322 323 3.737172 CTTTTGCGGGAGGTGCGG 61.737 66.667 0.00 0.00 34.24 5.69
345 346 2.616969 GCCTCTCGCAAACAGAACA 58.383 52.632 0.00 0.00 37.47 3.18
346 347 1.160137 GCCTCTCGCAAACAGAACAT 58.840 50.000 0.00 0.00 37.47 2.71
347 348 1.537202 GCCTCTCGCAAACAGAACATT 59.463 47.619 0.00 0.00 37.47 2.71
348 349 2.666619 GCCTCTCGCAAACAGAACATTG 60.667 50.000 0.00 0.00 37.47 2.82
349 350 2.578495 CTCTCGCAAACAGAACATTGC 58.422 47.619 0.58 0.58 46.45 3.56
355 356 4.612932 GCAAACAGAACATTGCCAAAAA 57.387 36.364 0.00 0.00 44.72 1.94
414 415 6.591313 TTTTTCATTTTTGAAAGGTACGGC 57.409 33.333 1.89 0.00 38.76 5.68
415 416 3.926821 TCATTTTTGAAAGGTACGGCC 57.073 42.857 0.00 0.00 37.58 6.13
416 417 2.226912 TCATTTTTGAAAGGTACGGCCG 59.773 45.455 26.86 26.86 43.70 6.13
417 418 1.677942 TTTTTGAAAGGTACGGCCGT 58.322 45.000 36.01 36.01 43.70 5.68
418 419 0.945813 TTTTGAAAGGTACGGCCGTG 59.054 50.000 40.02 8.89 43.70 4.94
419 420 1.508808 TTTGAAAGGTACGGCCGTGC 61.509 55.000 40.02 37.33 43.70 5.34
429 430 3.706373 GGCCGTGCCTCTTGAGGA 61.706 66.667 19.85 3.20 46.69 3.71
430 431 2.347490 GCCGTGCCTCTTGAGGAA 59.653 61.111 19.85 7.08 0.00 3.36
431 432 1.743252 GCCGTGCCTCTTGAGGAAG 60.743 63.158 19.85 9.51 0.00 3.46
432 433 1.743252 CCGTGCCTCTTGAGGAAGC 60.743 63.158 19.85 5.74 32.35 3.86
433 434 1.004560 CGTGCCTCTTGAGGAAGCA 60.005 57.895 19.85 8.19 38.87 3.91
434 435 0.603707 CGTGCCTCTTGAGGAAGCAA 60.604 55.000 19.85 0.00 42.24 3.91
435 436 1.609208 GTGCCTCTTGAGGAAGCAAA 58.391 50.000 19.85 0.00 42.24 3.68
436 437 1.956477 GTGCCTCTTGAGGAAGCAAAA 59.044 47.619 19.85 0.00 42.24 2.44
437 438 1.956477 TGCCTCTTGAGGAAGCAAAAC 59.044 47.619 19.85 0.93 38.32 2.43
438 439 1.270826 GCCTCTTGAGGAAGCAAAACC 59.729 52.381 19.85 0.00 32.03 3.27
439 440 1.889170 CCTCTTGAGGAAGCAAAACCC 59.111 52.381 11.02 0.00 0.00 4.11
440 441 2.489802 CCTCTTGAGGAAGCAAAACCCT 60.490 50.000 11.02 0.00 0.00 4.34
441 442 2.555757 CTCTTGAGGAAGCAAAACCCTG 59.444 50.000 0.00 0.00 0.00 4.45
442 443 1.000171 CTTGAGGAAGCAAAACCCTGC 60.000 52.381 0.00 0.00 42.97 4.85
443 444 0.827507 TGAGGAAGCAAAACCCTGCC 60.828 55.000 0.00 0.00 43.73 4.85
444 445 0.540597 GAGGAAGCAAAACCCTGCCT 60.541 55.000 0.00 0.00 43.73 4.75
445 446 0.540597 AGGAAGCAAAACCCTGCCTC 60.541 55.000 0.00 0.00 43.73 4.70
446 447 0.540597 GGAAGCAAAACCCTGCCTCT 60.541 55.000 0.00 0.00 43.73 3.69
447 448 0.884514 GAAGCAAAACCCTGCCTCTC 59.115 55.000 0.00 0.00 43.73 3.20
448 449 0.890996 AAGCAAAACCCTGCCTCTCG 60.891 55.000 0.00 0.00 43.73 4.04
449 450 2.982744 GCAAAACCCTGCCTCTCGC 61.983 63.158 0.00 0.00 36.25 5.03
450 451 2.358737 AAAACCCTGCCTCTCGCG 60.359 61.111 0.00 0.00 42.08 5.87
451 452 3.901797 AAAACCCTGCCTCTCGCGG 62.902 63.158 6.13 0.00 44.20 6.46
466 467 2.050442 CGGAAGCAAAACCGTGCC 60.050 61.111 0.00 0.00 46.14 5.01
467 468 2.551912 CGGAAGCAAAACCGTGCCT 61.552 57.895 0.00 0.00 46.14 4.75
468 469 1.285950 GGAAGCAAAACCGTGCCTC 59.714 57.895 0.00 0.00 46.14 4.70
469 470 1.172812 GGAAGCAAAACCGTGCCTCT 61.173 55.000 0.00 0.00 46.14 3.69
470 471 0.238553 GAAGCAAAACCGTGCCTCTC 59.761 55.000 0.00 0.00 46.14 3.20
471 472 0.465460 AAGCAAAACCGTGCCTCTCA 60.465 50.000 0.00 0.00 46.14 3.27
472 473 0.250901 AGCAAAACCGTGCCTCTCAT 60.251 50.000 0.00 0.00 46.14 2.90
473 474 0.109597 GCAAAACCGTGCCTCTCATG 60.110 55.000 0.00 0.00 38.66 3.07
474 475 1.522668 CAAAACCGTGCCTCTCATGA 58.477 50.000 0.00 0.00 33.49 3.07
475 476 1.879380 CAAAACCGTGCCTCTCATGAA 59.121 47.619 0.00 0.00 33.49 2.57
476 477 2.270352 AAACCGTGCCTCTCATGAAA 57.730 45.000 0.00 0.00 33.49 2.69
477 478 2.270352 AACCGTGCCTCTCATGAAAA 57.730 45.000 0.00 0.00 33.49 2.29
478 479 2.496899 ACCGTGCCTCTCATGAAAAT 57.503 45.000 0.00 0.00 33.49 1.82
479 480 3.627395 ACCGTGCCTCTCATGAAAATA 57.373 42.857 0.00 0.00 33.49 1.40
480 481 3.950397 ACCGTGCCTCTCATGAAAATAA 58.050 40.909 0.00 0.00 33.49 1.40
481 482 4.331968 ACCGTGCCTCTCATGAAAATAAA 58.668 39.130 0.00 0.00 33.49 1.40
482 483 4.764823 ACCGTGCCTCTCATGAAAATAAAA 59.235 37.500 0.00 0.00 33.49 1.52
483 484 5.242838 ACCGTGCCTCTCATGAAAATAAAAA 59.757 36.000 0.00 0.00 33.49 1.94
519 520 3.505835 TTTTTGTTCCGACAGGCCT 57.494 47.368 0.00 0.00 37.04 5.19
520 521 1.314730 TTTTTGTTCCGACAGGCCTC 58.685 50.000 0.00 0.00 37.04 4.70
521 522 0.181587 TTTTGTTCCGACAGGCCTCA 59.818 50.000 0.00 0.00 37.04 3.86
522 523 0.400213 TTTGTTCCGACAGGCCTCAT 59.600 50.000 0.00 0.00 37.04 2.90
523 524 0.036388 TTGTTCCGACAGGCCTCATC 60.036 55.000 0.00 2.16 37.04 2.92
524 525 1.519455 GTTCCGACAGGCCTCATCG 60.519 63.158 23.51 23.51 37.47 3.84
525 526 1.680989 TTCCGACAGGCCTCATCGA 60.681 57.895 29.41 16.65 38.10 3.59
526 527 1.254975 TTCCGACAGGCCTCATCGAA 61.255 55.000 29.41 20.24 38.10 3.71
527 528 1.519455 CCGACAGGCCTCATCGAAC 60.519 63.158 29.41 8.14 38.10 3.95
528 529 1.215382 CGACAGGCCTCATCGAACA 59.785 57.895 25.42 0.00 38.10 3.18
529 530 0.389817 CGACAGGCCTCATCGAACAA 60.390 55.000 25.42 0.00 38.10 2.83
530 531 1.808411 GACAGGCCTCATCGAACAAA 58.192 50.000 0.00 0.00 0.00 2.83
531 532 2.151202 GACAGGCCTCATCGAACAAAA 58.849 47.619 0.00 0.00 0.00 2.44
532 533 1.880027 ACAGGCCTCATCGAACAAAAC 59.120 47.619 0.00 0.00 0.00 2.43
533 534 1.200020 CAGGCCTCATCGAACAAAACC 59.800 52.381 0.00 0.00 0.00 3.27
534 535 0.168128 GGCCTCATCGAACAAAACCG 59.832 55.000 0.00 0.00 0.00 4.44
535 536 0.872388 GCCTCATCGAACAAAACCGT 59.128 50.000 0.00 0.00 0.00 4.83
536 537 1.265905 GCCTCATCGAACAAAACCGTT 59.734 47.619 0.00 0.00 0.00 4.44
537 538 2.664698 GCCTCATCGAACAAAACCGTTC 60.665 50.000 0.00 0.00 41.56 3.95
542 543 3.537471 GAACAAAACCGTTCGGTGG 57.463 52.632 17.59 12.34 38.70 4.61
543 544 0.029700 GAACAAAACCGTTCGGTGGG 59.970 55.000 17.59 12.02 38.70 4.61
544 545 1.385756 AACAAAACCGTTCGGTGGGG 61.386 55.000 17.59 11.70 38.70 4.96
545 546 2.908428 AAAACCGTTCGGTGGGGC 60.908 61.111 17.59 0.00 38.70 5.80
556 557 4.851179 GTGGGGCGATCGGGGAAC 62.851 72.222 18.30 0.00 0.00 3.62
573 574 4.361827 CGACTAGTTCGGCGTGAG 57.638 61.111 6.85 2.66 44.60 3.51
574 575 1.226323 CGACTAGTTCGGCGTGAGG 60.226 63.158 6.85 0.00 44.60 3.86
575 576 1.881602 GACTAGTTCGGCGTGAGGT 59.118 57.895 6.85 0.71 0.00 3.85
576 577 0.456312 GACTAGTTCGGCGTGAGGTG 60.456 60.000 6.85 0.00 0.00 4.00
577 578 1.153823 CTAGTTCGGCGTGAGGTGG 60.154 63.158 6.85 0.00 0.00 4.61
578 579 1.874345 CTAGTTCGGCGTGAGGTGGT 61.874 60.000 6.85 0.00 0.00 4.16
579 580 1.466025 TAGTTCGGCGTGAGGTGGTT 61.466 55.000 6.85 0.00 0.00 3.67
580 581 1.005867 GTTCGGCGTGAGGTGGTTA 60.006 57.895 6.85 0.00 0.00 2.85
581 582 0.600782 GTTCGGCGTGAGGTGGTTAA 60.601 55.000 6.85 0.00 0.00 2.01
582 583 0.106335 TTCGGCGTGAGGTGGTTAAA 59.894 50.000 6.85 0.00 0.00 1.52
583 584 0.106335 TCGGCGTGAGGTGGTTAAAA 59.894 50.000 6.85 0.00 0.00 1.52
584 585 0.945813 CGGCGTGAGGTGGTTAAAAA 59.054 50.000 0.00 0.00 0.00 1.94
585 586 1.538075 CGGCGTGAGGTGGTTAAAAAT 59.462 47.619 0.00 0.00 0.00 1.82
586 587 2.413634 CGGCGTGAGGTGGTTAAAAATC 60.414 50.000 0.00 0.00 0.00 2.17
587 588 2.817844 GGCGTGAGGTGGTTAAAAATCT 59.182 45.455 0.00 0.00 0.00 2.40
588 589 3.365969 GGCGTGAGGTGGTTAAAAATCTG 60.366 47.826 0.00 0.00 0.00 2.90
589 590 3.500680 GCGTGAGGTGGTTAAAAATCTGA 59.499 43.478 0.00 0.00 0.00 3.27
590 591 4.612939 GCGTGAGGTGGTTAAAAATCTGAC 60.613 45.833 0.00 0.00 0.00 3.51
591 592 4.377022 CGTGAGGTGGTTAAAAATCTGACG 60.377 45.833 0.00 0.00 0.00 4.35
592 593 4.514066 GTGAGGTGGTTAAAAATCTGACGT 59.486 41.667 0.00 0.00 0.00 4.34
593 594 5.008316 GTGAGGTGGTTAAAAATCTGACGTT 59.992 40.000 0.00 0.00 0.00 3.99
594 595 5.237779 TGAGGTGGTTAAAAATCTGACGTTC 59.762 40.000 0.00 0.00 0.00 3.95
595 596 5.374071 AGGTGGTTAAAAATCTGACGTTCT 58.626 37.500 0.00 0.00 0.00 3.01
596 597 5.238650 AGGTGGTTAAAAATCTGACGTTCTG 59.761 40.000 0.00 0.00 0.00 3.02
597 598 5.008316 GGTGGTTAAAAATCTGACGTTCTGT 59.992 40.000 0.00 0.00 0.00 3.41
598 599 5.907391 GTGGTTAAAAATCTGACGTTCTGTG 59.093 40.000 0.00 0.00 0.00 3.66
599 600 5.008217 TGGTTAAAAATCTGACGTTCTGTGG 59.992 40.000 0.00 0.00 0.00 4.17
600 601 5.008316 GGTTAAAAATCTGACGTTCTGTGGT 59.992 40.000 0.00 0.00 0.00 4.16
601 602 6.459161 GGTTAAAAATCTGACGTTCTGTGGTT 60.459 38.462 0.00 0.00 0.00 3.67
602 603 7.254863 GGTTAAAAATCTGACGTTCTGTGGTTA 60.255 37.037 0.00 0.00 0.00 2.85
603 604 6.877611 AAAAATCTGACGTTCTGTGGTTAT 57.122 33.333 0.00 0.00 0.00 1.89
604 605 6.481954 AAAATCTGACGTTCTGTGGTTATC 57.518 37.500 0.00 0.00 0.00 1.75
605 606 3.587797 TCTGACGTTCTGTGGTTATCC 57.412 47.619 0.00 0.00 0.00 2.59
606 607 3.162666 TCTGACGTTCTGTGGTTATCCT 58.837 45.455 0.00 0.00 34.23 3.24
607 608 4.338012 TCTGACGTTCTGTGGTTATCCTA 58.662 43.478 0.00 0.00 34.23 2.94
608 609 4.398358 TCTGACGTTCTGTGGTTATCCTAG 59.602 45.833 0.00 0.00 34.23 3.02
609 610 4.084287 TGACGTTCTGTGGTTATCCTAGT 58.916 43.478 0.00 0.00 34.23 2.57
610 611 4.525487 TGACGTTCTGTGGTTATCCTAGTT 59.475 41.667 0.00 0.00 34.23 2.24
611 612 4.817517 ACGTTCTGTGGTTATCCTAGTTG 58.182 43.478 0.00 0.00 34.23 3.16
612 613 4.525487 ACGTTCTGTGGTTATCCTAGTTGA 59.475 41.667 0.00 0.00 34.23 3.18
613 614 5.187186 ACGTTCTGTGGTTATCCTAGTTGAT 59.813 40.000 0.00 0.00 34.23 2.57
614 615 5.520288 CGTTCTGTGGTTATCCTAGTTGATG 59.480 44.000 0.00 0.00 34.23 3.07
615 616 5.614324 TCTGTGGTTATCCTAGTTGATGG 57.386 43.478 0.00 0.00 34.23 3.51
616 617 4.130118 CTGTGGTTATCCTAGTTGATGGC 58.870 47.826 0.00 0.00 34.23 4.40
617 618 3.118038 TGTGGTTATCCTAGTTGATGGCC 60.118 47.826 0.00 0.00 34.23 5.36
618 619 2.441750 TGGTTATCCTAGTTGATGGCCC 59.558 50.000 0.00 0.00 34.23 5.80
619 620 2.441750 GGTTATCCTAGTTGATGGCCCA 59.558 50.000 0.00 0.00 0.00 5.36
620 621 3.074538 GGTTATCCTAGTTGATGGCCCAT 59.925 47.826 0.00 0.00 0.00 4.00
621 622 4.327680 GTTATCCTAGTTGATGGCCCATC 58.672 47.826 17.13 17.13 40.88 3.51
622 623 0.758734 TCCTAGTTGATGGCCCATCG 59.241 55.000 18.59 4.05 43.14 3.84
623 624 0.758734 CCTAGTTGATGGCCCATCGA 59.241 55.000 18.59 14.42 43.14 3.59
624 625 1.140852 CCTAGTTGATGGCCCATCGAA 59.859 52.381 15.43 9.48 43.14 3.71
625 626 2.224621 CCTAGTTGATGGCCCATCGAAT 60.225 50.000 17.48 17.48 43.14 3.34
626 627 2.442236 AGTTGATGGCCCATCGAATT 57.558 45.000 15.43 6.66 43.14 2.17
627 628 2.738743 AGTTGATGGCCCATCGAATTT 58.261 42.857 15.43 1.99 43.14 1.82
628 629 3.099141 AGTTGATGGCCCATCGAATTTT 58.901 40.909 15.43 0.00 43.14 1.82
629 630 4.277476 AGTTGATGGCCCATCGAATTTTA 58.723 39.130 15.43 0.00 43.14 1.52
630 631 4.097892 AGTTGATGGCCCATCGAATTTTAC 59.902 41.667 15.43 2.29 43.14 2.01
631 632 3.897239 TGATGGCCCATCGAATTTTACT 58.103 40.909 18.59 0.00 43.14 2.24
632 633 3.631686 TGATGGCCCATCGAATTTTACTG 59.368 43.478 18.59 0.00 43.14 2.74
633 634 2.374184 TGGCCCATCGAATTTTACTGG 58.626 47.619 0.00 0.00 0.00 4.00
634 635 1.067060 GGCCCATCGAATTTTACTGGC 59.933 52.381 0.00 0.00 36.92 4.85
635 636 1.748493 GCCCATCGAATTTTACTGGCA 59.252 47.619 0.00 0.00 37.58 4.92
636 637 2.223572 GCCCATCGAATTTTACTGGCAG 60.224 50.000 14.16 14.16 37.58 4.85
637 638 2.223572 CCCATCGAATTTTACTGGCAGC 60.224 50.000 15.89 0.00 0.00 5.25
638 639 2.423185 CCATCGAATTTTACTGGCAGCA 59.577 45.455 15.89 0.00 0.00 4.41
639 640 3.488047 CCATCGAATTTTACTGGCAGCAG 60.488 47.826 15.89 0.00 0.00 4.24
640 641 2.083774 TCGAATTTTACTGGCAGCAGG 58.916 47.619 15.89 0.00 0.00 4.85
641 642 2.083774 CGAATTTTACTGGCAGCAGGA 58.916 47.619 15.89 0.00 0.00 3.86
642 643 2.096496 CGAATTTTACTGGCAGCAGGAG 59.904 50.000 15.89 0.00 0.00 3.69
643 644 3.347216 GAATTTTACTGGCAGCAGGAGA 58.653 45.455 15.89 0.00 0.00 3.71
644 645 2.479566 TTTTACTGGCAGCAGGAGAG 57.520 50.000 15.89 0.00 0.00 3.20
645 646 1.644509 TTTACTGGCAGCAGGAGAGA 58.355 50.000 15.89 0.00 0.00 3.10
646 647 1.644509 TTACTGGCAGCAGGAGAGAA 58.355 50.000 15.89 0.00 0.00 2.87
647 648 1.189752 TACTGGCAGCAGGAGAGAAG 58.810 55.000 15.89 0.00 0.00 2.85
648 649 0.835543 ACTGGCAGCAGGAGAGAAGT 60.836 55.000 15.89 0.00 0.00 3.01
649 650 0.391395 CTGGCAGCAGGAGAGAAGTG 60.391 60.000 0.00 0.00 0.00 3.16
650 651 1.744741 GGCAGCAGGAGAGAAGTGC 60.745 63.158 0.00 0.00 37.48 4.40
651 652 1.004080 GCAGCAGGAGAGAAGTGCA 60.004 57.895 0.00 0.00 39.80 4.57
652 653 0.392729 GCAGCAGGAGAGAAGTGCAT 60.393 55.000 0.00 0.00 39.80 3.96
653 654 1.134580 GCAGCAGGAGAGAAGTGCATA 60.135 52.381 0.00 0.00 39.80 3.14
654 655 2.823984 CAGCAGGAGAGAAGTGCATAG 58.176 52.381 0.00 0.00 39.80 2.23
655 656 1.761784 AGCAGGAGAGAAGTGCATAGG 59.238 52.381 0.00 0.00 39.80 2.57
656 657 1.759445 GCAGGAGAGAAGTGCATAGGA 59.241 52.381 0.00 0.00 37.16 2.94
657 658 2.169352 GCAGGAGAGAAGTGCATAGGAA 59.831 50.000 0.00 0.00 37.16 3.36
658 659 3.369892 GCAGGAGAGAAGTGCATAGGAAA 60.370 47.826 0.00 0.00 37.16 3.13
659 660 4.440880 CAGGAGAGAAGTGCATAGGAAAG 58.559 47.826 0.00 0.00 0.00 2.62
660 661 3.454082 AGGAGAGAAGTGCATAGGAAAGG 59.546 47.826 0.00 0.00 0.00 3.11
661 662 3.452627 GGAGAGAAGTGCATAGGAAAGGA 59.547 47.826 0.00 0.00 0.00 3.36
662 663 4.438148 GAGAGAAGTGCATAGGAAAGGAC 58.562 47.826 0.00 0.00 0.00 3.85
663 664 4.100373 AGAGAAGTGCATAGGAAAGGACT 58.900 43.478 0.00 0.00 38.09 3.85
664 665 4.534103 AGAGAAGTGCATAGGAAAGGACTT 59.466 41.667 0.00 0.00 46.87 3.01
673 674 2.183679 AGGAAAGGACTTCAGAGCGAT 58.816 47.619 0.00 0.00 35.55 4.58
674 675 3.366396 AGGAAAGGACTTCAGAGCGATA 58.634 45.455 0.00 0.00 35.55 2.92
677 678 4.338682 GGAAAGGACTTCAGAGCGATAGTA 59.661 45.833 0.00 0.00 35.55 1.82
707 708 5.696724 CCTACACGAGAGAAAGAACAATGTT 59.303 40.000 0.00 0.00 0.00 2.71
708 709 6.202954 CCTACACGAGAGAAAGAACAATGTTT 59.797 38.462 0.00 0.00 0.00 2.83
709 710 6.049263 ACACGAGAGAAAGAACAATGTTTC 57.951 37.500 0.00 0.00 38.70 2.78
710 711 5.007724 ACACGAGAGAAAGAACAATGTTTCC 59.992 40.000 0.00 0.00 39.09 3.13
711 712 4.515567 ACGAGAGAAAGAACAATGTTTCCC 59.484 41.667 0.00 0.00 39.09 3.97
712 713 4.757149 CGAGAGAAAGAACAATGTTTCCCT 59.243 41.667 0.00 0.00 39.09 4.20
713 714 5.106908 CGAGAGAAAGAACAATGTTTCCCTC 60.107 44.000 0.00 5.54 39.09 4.30
714 715 5.694995 AGAGAAAGAACAATGTTTCCCTCA 58.305 37.500 0.00 0.00 39.09 3.86
715 716 6.129179 AGAGAAAGAACAATGTTTCCCTCAA 58.871 36.000 0.00 0.00 39.09 3.02
716 717 6.607198 AGAGAAAGAACAATGTTTCCCTCAAA 59.393 34.615 0.00 0.00 39.09 2.69
717 718 7.124147 AGAGAAAGAACAATGTTTCCCTCAAAA 59.876 33.333 0.00 0.00 39.09 2.44
718 719 7.619965 AGAAAGAACAATGTTTCCCTCAAAAA 58.380 30.769 0.00 0.00 39.09 1.94
752 753 2.579410 AGAACAATGTGGTGGGGTAC 57.421 50.000 0.00 0.00 0.00 3.34
755 756 1.440618 ACAATGTGGTGGGGTACTGA 58.559 50.000 0.00 0.00 0.00 3.41
820 821 1.745489 GTGGGATCAGGTTGACGCC 60.745 63.158 0.00 0.00 0.00 5.68
825 826 0.824759 GATCAGGTTGACGCCTAGGT 59.175 55.000 11.31 0.00 37.04 3.08
860 861 4.333372 TGTCTACACACATTGCATGCATAG 59.667 41.667 23.37 18.91 0.00 2.23
939 959 2.224159 ACATGCTCCGGAACCCACT 61.224 57.895 5.23 0.00 0.00 4.00
944 964 1.691976 TGCTCCGGAACCCACTATATG 59.308 52.381 5.23 0.00 0.00 1.78
969 989 3.356267 GCACACGCACATGCTCCA 61.356 61.111 1.82 0.00 38.84 3.86
973 993 2.046892 ACGCACATGCTCCAGACC 60.047 61.111 1.82 0.00 39.32 3.85
975 995 1.450848 CGCACATGCTCCAGACCAT 60.451 57.895 1.82 0.00 39.32 3.55
977 997 0.107312 GCACATGCTCCAGACCATCT 60.107 55.000 0.00 0.00 38.21 2.90
978 998 1.950828 CACATGCTCCAGACCATCTC 58.049 55.000 0.00 0.00 0.00 2.75
979 999 0.835941 ACATGCTCCAGACCATCTCC 59.164 55.000 0.00 0.00 0.00 3.71
980 1000 0.108207 CATGCTCCAGACCATCTCCC 59.892 60.000 0.00 0.00 0.00 4.30
1021 1088 2.360980 CACGGGTCCTCCTCCTCT 59.639 66.667 0.00 0.00 0.00 3.69
1413 1501 1.675641 GCCGGTGAGCAAGGTGAAT 60.676 57.895 1.90 0.00 0.00 2.57
2169 2316 2.574399 GAGAAGAAGCGGCTCGGT 59.426 61.111 1.45 0.00 40.00 4.69
2270 2435 6.914215 CGACTACTGCGTGTAATAAATAAGGA 59.086 38.462 0.00 0.00 0.00 3.36
2301 2481 7.391833 ACTTTCCATCAAAGGTCTGATAAGAAC 59.608 37.037 0.00 0.00 45.35 3.01
2368 2548 4.341235 CACGGTCAAGATACCTCTTATCCA 59.659 45.833 0.00 0.00 39.78 3.41
2382 2562 4.766375 TCTTATCCAGTCGCCCTTTAAAG 58.234 43.478 8.32 8.32 0.00 1.85
2399 4307 9.154847 CCCTTTAAAGAAAAATCATGTCATTCC 57.845 33.333 16.98 0.00 0.00 3.01
2460 4368 1.472662 CCCGCACGAATATCCCTCCT 61.473 60.000 0.00 0.00 0.00 3.69
2475 4383 2.002018 CTCCTAGGCTCCGACCCTCT 62.002 65.000 2.96 0.00 33.88 3.69
2499 4407 1.751351 CTCCGTATCTCTTGCCTCACA 59.249 52.381 0.00 0.00 0.00 3.58
2512 4420 2.116238 GCCTCACACACCTCCCTAATA 58.884 52.381 0.00 0.00 0.00 0.98
2534 4442 4.988598 CGCCAACTGCACCGACCT 62.989 66.667 0.00 0.00 41.33 3.85
2535 4443 3.050275 GCCAACTGCACCGACCTC 61.050 66.667 0.00 0.00 40.77 3.85
2536 4444 2.738521 CCAACTGCACCGACCTCG 60.739 66.667 0.00 0.00 39.44 4.63
2537 4445 3.414700 CAACTGCACCGACCTCGC 61.415 66.667 0.00 0.00 38.18 5.03
2576 4484 1.152984 CGTCCCCCATTGCATGCTA 60.153 57.895 20.33 12.49 0.00 3.49
2614 4522 0.467290 GACCAAACCAGGCACCTCAA 60.467 55.000 0.00 0.00 0.00 3.02
2615 4523 0.755327 ACCAAACCAGGCACCTCAAC 60.755 55.000 0.00 0.00 0.00 3.18
2631 4539 2.611292 CTCAACGCCCAGATTCATTCTC 59.389 50.000 0.00 0.00 29.93 2.87
2646 4554 0.725133 TTCTCCTCCTCCTCCCCATT 59.275 55.000 0.00 0.00 0.00 3.16
2719 4627 4.885325 GCATTTCTAACCGATCCCCTAAAA 59.115 41.667 0.00 0.00 0.00 1.52
2720 4628 5.358725 GCATTTCTAACCGATCCCCTAAAAA 59.641 40.000 0.00 0.00 0.00 1.94
2721 4629 6.679638 GCATTTCTAACCGATCCCCTAAAAAC 60.680 42.308 0.00 0.00 0.00 2.43
2725 4633 2.799017 ACCGATCCCCTAAAAACAACC 58.201 47.619 0.00 0.00 0.00 3.77
2805 4713 2.437895 GCCGTGTTTAGCCCCCTC 60.438 66.667 0.00 0.00 0.00 4.30
2817 4725 4.845307 CCCCTCCCCTCCCTTCCC 62.845 77.778 0.00 0.00 0.00 3.97
2828 4736 2.933834 CCTTCCCCACCCCTTCGT 60.934 66.667 0.00 0.00 0.00 3.85
2842 4750 2.196382 CTTCGTCGCCGTCAGAGGAA 62.196 60.000 0.00 6.86 39.30 3.36
2880 4788 1.300963 GGCTCTGATGAAGGTGGCA 59.699 57.895 0.00 0.00 0.00 4.92
2888 4796 4.344865 GAAGGTGGCAGCGGGGAA 62.345 66.667 11.51 0.00 0.00 3.97
3078 4987 2.819595 GCGGACGATGTGCCATGT 60.820 61.111 0.00 0.00 0.00 3.21
3086 4995 2.760650 ACGATGTGCCATGTAGAAGAGA 59.239 45.455 0.00 0.00 0.00 3.10
3101 5012 2.296073 AGAGACCCTCAACTTCGAGT 57.704 50.000 0.00 0.00 32.06 4.18
3162 5074 4.321899 GCTGGCAAGAAAATACATTGGTGA 60.322 41.667 0.00 0.00 0.00 4.02
3180 5092 5.212745 TGGTGATCCTAAAAGTTTTTGGGT 58.787 37.500 23.11 18.80 45.66 4.51
3187 5099 5.528320 TCCTAAAAGTTTTTGGGTAGTGTCG 59.472 40.000 23.11 1.27 45.66 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.256383 TGGTGAGAACGGTTCGAGATTTA 59.744 43.478 14.70 0.00 34.02 1.40
1 2 2.036733 TGGTGAGAACGGTTCGAGATTT 59.963 45.455 14.70 0.00 34.02 2.17
2 3 1.616865 TGGTGAGAACGGTTCGAGATT 59.383 47.619 14.70 0.00 34.02 2.40
3 4 1.254026 TGGTGAGAACGGTTCGAGAT 58.746 50.000 14.70 0.00 34.02 2.75
4 5 1.254026 ATGGTGAGAACGGTTCGAGA 58.746 50.000 14.70 0.84 34.02 4.04
5 6 1.726791 CAATGGTGAGAACGGTTCGAG 59.273 52.381 14.70 0.00 34.02 4.04
6 7 1.606994 CCAATGGTGAGAACGGTTCGA 60.607 52.381 14.70 3.62 34.02 3.71
7 8 0.796312 CCAATGGTGAGAACGGTTCG 59.204 55.000 14.70 0.00 34.02 3.95
8 9 2.178912 TCCAATGGTGAGAACGGTTC 57.821 50.000 12.91 12.91 0.00 3.62
9 10 2.879103 ATCCAATGGTGAGAACGGTT 57.121 45.000 0.00 0.00 0.00 4.44
10 11 2.618045 GGAATCCAATGGTGAGAACGGT 60.618 50.000 0.00 0.00 0.00 4.83
11 12 2.017049 GGAATCCAATGGTGAGAACGG 58.983 52.381 0.00 0.00 0.00 4.44
12 13 2.939103 GAGGAATCCAATGGTGAGAACG 59.061 50.000 0.61 0.00 0.00 3.95
13 14 2.939103 CGAGGAATCCAATGGTGAGAAC 59.061 50.000 0.61 0.00 0.00 3.01
14 15 2.571653 ACGAGGAATCCAATGGTGAGAA 59.428 45.455 0.61 0.00 0.00 2.87
15 16 2.187958 ACGAGGAATCCAATGGTGAGA 58.812 47.619 0.61 0.00 0.00 3.27
16 17 2.698855 ACGAGGAATCCAATGGTGAG 57.301 50.000 0.61 0.00 0.00 3.51
17 18 4.163268 TCAATACGAGGAATCCAATGGTGA 59.837 41.667 0.61 0.00 0.00 4.02
18 19 4.450976 TCAATACGAGGAATCCAATGGTG 58.549 43.478 0.61 0.00 0.00 4.17
19 20 4.408921 TCTCAATACGAGGAATCCAATGGT 59.591 41.667 0.61 0.00 42.55 3.55
20 21 4.960938 TCTCAATACGAGGAATCCAATGG 58.039 43.478 0.61 0.00 42.55 3.16
21 22 6.462500 AGATCTCAATACGAGGAATCCAATG 58.538 40.000 0.61 0.00 42.55 2.82
22 23 6.678568 AGATCTCAATACGAGGAATCCAAT 57.321 37.500 0.61 0.00 42.55 3.16
23 24 6.485830 AAGATCTCAATACGAGGAATCCAA 57.514 37.500 0.61 0.00 42.55 3.53
24 25 7.597288 TTAAGATCTCAATACGAGGAATCCA 57.403 36.000 0.61 0.00 42.55 3.41
25 26 8.888579 TTTTAAGATCTCAATACGAGGAATCC 57.111 34.615 0.00 0.00 42.55 3.01
27 28 9.892130 AGTTTTTAAGATCTCAATACGAGGAAT 57.108 29.630 0.00 0.00 42.55 3.01
59 60 9.342308 GGACTTCATCAAAACCTATCAATATGA 57.658 33.333 0.00 0.00 0.00 2.15
60 61 9.347240 AGGACTTCATCAAAACCTATCAATATG 57.653 33.333 0.00 0.00 0.00 1.78
61 62 9.566432 GAGGACTTCATCAAAACCTATCAATAT 57.434 33.333 0.00 0.00 0.00 1.28
62 63 8.772250 AGAGGACTTCATCAAAACCTATCAATA 58.228 33.333 0.00 0.00 0.00 1.90
63 64 7.555554 CAGAGGACTTCATCAAAACCTATCAAT 59.444 37.037 0.00 0.00 0.00 2.57
64 65 6.881065 CAGAGGACTTCATCAAAACCTATCAA 59.119 38.462 0.00 0.00 0.00 2.57
65 66 6.013379 ACAGAGGACTTCATCAAAACCTATCA 60.013 38.462 0.00 0.00 0.00 2.15
66 67 6.410540 ACAGAGGACTTCATCAAAACCTATC 58.589 40.000 0.00 0.00 0.00 2.08
67 68 6.013379 TGACAGAGGACTTCATCAAAACCTAT 60.013 38.462 0.00 0.00 0.00 2.57
68 69 5.306937 TGACAGAGGACTTCATCAAAACCTA 59.693 40.000 0.00 0.00 0.00 3.08
69 70 4.103153 TGACAGAGGACTTCATCAAAACCT 59.897 41.667 0.00 0.00 0.00 3.50
70 71 4.214332 GTGACAGAGGACTTCATCAAAACC 59.786 45.833 0.00 0.00 0.00 3.27
71 72 4.084328 CGTGACAGAGGACTTCATCAAAAC 60.084 45.833 0.00 0.00 0.00 2.43
72 73 4.058124 CGTGACAGAGGACTTCATCAAAA 58.942 43.478 0.00 0.00 0.00 2.44
73 74 3.320826 TCGTGACAGAGGACTTCATCAAA 59.679 43.478 0.00 0.00 0.00 2.69
74 75 2.890945 TCGTGACAGAGGACTTCATCAA 59.109 45.455 0.00 0.00 0.00 2.57
75 76 2.514803 TCGTGACAGAGGACTTCATCA 58.485 47.619 0.00 0.00 0.00 3.07
76 77 3.577649 TTCGTGACAGAGGACTTCATC 57.422 47.619 0.00 0.00 0.00 2.92
77 78 4.336889 TTTTCGTGACAGAGGACTTCAT 57.663 40.909 0.00 0.00 0.00 2.57
78 79 3.812156 TTTTCGTGACAGAGGACTTCA 57.188 42.857 0.00 0.00 0.00 3.02
96 97 4.388378 TTCGGGTTTTTCGTCCATTTTT 57.612 36.364 0.00 0.00 0.00 1.94
97 98 4.552355 GATTCGGGTTTTTCGTCCATTTT 58.448 39.130 0.00 0.00 0.00 1.82
98 99 3.365565 CGATTCGGGTTTTTCGTCCATTT 60.366 43.478 0.00 0.00 0.00 2.32
99 100 2.160813 CGATTCGGGTTTTTCGTCCATT 59.839 45.455 0.00 0.00 0.00 3.16
100 101 1.735571 CGATTCGGGTTTTTCGTCCAT 59.264 47.619 0.00 0.00 0.00 3.41
101 102 1.149987 CGATTCGGGTTTTTCGTCCA 58.850 50.000 0.00 0.00 0.00 4.02
102 103 1.392510 CTCGATTCGGGTTTTTCGTCC 59.607 52.381 6.18 0.00 33.52 4.79
103 104 2.331194 TCTCGATTCGGGTTTTTCGTC 58.669 47.619 5.74 0.00 33.52 4.20
104 105 2.334838 CTCTCGATTCGGGTTTTTCGT 58.665 47.619 5.74 0.00 33.52 3.85
105 106 1.060698 GCTCTCGATTCGGGTTTTTCG 59.939 52.381 5.74 0.00 0.00 3.46
106 107 1.397343 GGCTCTCGATTCGGGTTTTTC 59.603 52.381 5.74 0.00 0.00 2.29
107 108 1.003233 AGGCTCTCGATTCGGGTTTTT 59.997 47.619 5.74 0.00 0.00 1.94
108 109 0.613777 AGGCTCTCGATTCGGGTTTT 59.386 50.000 5.74 0.00 0.00 2.43
109 110 0.175989 GAGGCTCTCGATTCGGGTTT 59.824 55.000 7.40 0.00 0.00 3.27
110 111 0.684805 AGAGGCTCTCGATTCGGGTT 60.685 55.000 12.24 0.00 35.36 4.11
111 112 0.684805 AAGAGGCTCTCGATTCGGGT 60.685 55.000 19.03 0.00 35.36 5.28
112 113 0.461961 AAAGAGGCTCTCGATTCGGG 59.538 55.000 19.03 2.18 35.36 5.14
113 114 2.301577 AAAAGAGGCTCTCGATTCGG 57.698 50.000 19.03 0.00 35.36 4.30
137 138 1.941476 CGAGAACGGCTTTCGGAACG 61.941 60.000 0.00 0.00 45.02 3.95
138 139 0.665369 TCGAGAACGGCTTTCGGAAC 60.665 55.000 0.00 0.00 44.45 3.62
139 140 0.388134 CTCGAGAACGGCTTTCGGAA 60.388 55.000 6.58 0.00 44.45 4.30
140 141 1.211969 CTCGAGAACGGCTTTCGGA 59.788 57.895 6.58 0.03 44.45 4.55
141 142 1.071567 GTCTCGAGAACGGCTTTCGG 61.072 60.000 18.55 0.00 44.45 4.30
142 143 1.396543 CGTCTCGAGAACGGCTTTCG 61.397 60.000 18.55 10.06 45.88 3.46
143 144 1.675524 GCGTCTCGAGAACGGCTTTC 61.676 60.000 26.93 11.03 40.21 2.62
144 145 1.733399 GCGTCTCGAGAACGGCTTT 60.733 57.895 26.93 0.00 40.21 3.51
145 146 2.126424 GCGTCTCGAGAACGGCTT 60.126 61.111 26.93 0.00 40.21 4.35
146 147 2.701780 ATGCGTCTCGAGAACGGCT 61.702 57.895 26.93 15.07 40.21 5.52
147 148 2.202623 ATGCGTCTCGAGAACGGC 60.203 61.111 26.93 24.21 40.21 5.68
148 149 1.874019 CCATGCGTCTCGAGAACGG 60.874 63.158 26.93 17.63 40.21 4.44
149 150 2.508891 GCCATGCGTCTCGAGAACG 61.509 63.158 18.55 22.02 41.26 3.95
150 151 2.167861 GGCCATGCGTCTCGAGAAC 61.168 63.158 18.55 13.14 0.00 3.01
151 152 2.184322 GGCCATGCGTCTCGAGAA 59.816 61.111 18.55 1.43 0.00 2.87
152 153 4.193334 CGGCCATGCGTCTCGAGA 62.193 66.667 12.08 12.08 0.00 4.04
153 154 4.498520 ACGGCCATGCGTCTCGAG 62.499 66.667 5.93 5.93 0.00 4.04
154 155 4.794439 CACGGCCATGCGTCTCGA 62.794 66.667 2.24 0.00 0.00 4.04
156 157 3.188786 GACACGGCCATGCGTCTC 61.189 66.667 0.00 0.00 0.00 3.36
157 158 3.649277 GAGACACGGCCATGCGTCT 62.649 63.158 11.86 11.86 41.32 4.18
158 159 3.188786 GAGACACGGCCATGCGTC 61.189 66.667 0.00 0.17 0.00 5.19
159 160 3.649277 GAGAGACACGGCCATGCGT 62.649 63.158 0.00 0.00 0.00 5.24
160 161 2.887568 GAGAGACACGGCCATGCG 60.888 66.667 0.00 0.00 0.00 4.73
161 162 1.153289 ATGAGAGACACGGCCATGC 60.153 57.895 0.00 0.00 0.00 4.06
162 163 0.812811 CCATGAGAGACACGGCCATG 60.813 60.000 2.24 0.00 35.61 3.66
163 164 0.977627 TCCATGAGAGACACGGCCAT 60.978 55.000 2.24 0.00 31.22 4.40
164 165 1.191489 TTCCATGAGAGACACGGCCA 61.191 55.000 2.24 0.00 31.22 5.36
165 166 0.460987 CTTCCATGAGAGACACGGCC 60.461 60.000 0.00 0.00 31.22 6.13
166 167 0.247736 ACTTCCATGAGAGACACGGC 59.752 55.000 0.00 0.00 31.22 5.68
167 168 3.868757 TTACTTCCATGAGAGACACGG 57.131 47.619 0.00 0.00 32.57 4.94
168 169 4.806247 GGATTTACTTCCATGAGAGACACG 59.194 45.833 0.00 0.00 35.72 4.49
169 170 4.806247 CGGATTTACTTCCATGAGAGACAC 59.194 45.833 0.00 0.00 35.34 3.67
170 171 4.466370 ACGGATTTACTTCCATGAGAGACA 59.534 41.667 0.00 0.00 35.34 3.41
171 172 4.806247 CACGGATTTACTTCCATGAGAGAC 59.194 45.833 0.00 0.00 30.50 3.36
172 173 4.141937 CCACGGATTTACTTCCATGAGAGA 60.142 45.833 0.00 0.00 30.50 3.10
173 174 4.122776 CCACGGATTTACTTCCATGAGAG 58.877 47.826 0.00 0.00 30.50 3.20
174 175 3.681594 GCCACGGATTTACTTCCATGAGA 60.682 47.826 0.00 0.00 30.50 3.27
175 176 2.614057 GCCACGGATTTACTTCCATGAG 59.386 50.000 0.00 0.00 30.50 2.90
176 177 2.238646 AGCCACGGATTTACTTCCATGA 59.761 45.455 0.00 0.00 30.50 3.07
177 178 2.614057 GAGCCACGGATTTACTTCCATG 59.386 50.000 0.00 0.00 35.34 3.66
178 179 2.505819 AGAGCCACGGATTTACTTCCAT 59.494 45.455 0.00 0.00 35.34 3.41
179 180 1.906574 AGAGCCACGGATTTACTTCCA 59.093 47.619 0.00 0.00 35.34 3.53
180 181 2.552031 GAGAGCCACGGATTTACTTCC 58.448 52.381 0.00 0.00 0.00 3.46
181 182 2.194271 CGAGAGCCACGGATTTACTTC 58.806 52.381 0.00 0.00 0.00 3.01
182 183 2.295253 CGAGAGCCACGGATTTACTT 57.705 50.000 0.00 0.00 0.00 2.24
196 197 0.451135 CGGTTTTGCTTTCGCGAGAG 60.451 55.000 21.42 21.42 43.69 3.20
197 198 1.155424 ACGGTTTTGCTTTCGCGAGA 61.155 50.000 9.59 3.35 39.65 4.04
198 199 0.991770 CACGGTTTTGCTTTCGCGAG 60.992 55.000 9.59 0.00 39.65 5.03
199 200 1.010574 CACGGTTTTGCTTTCGCGA 60.011 52.632 3.71 3.71 39.65 5.87
200 201 2.635305 GCACGGTTTTGCTTTCGCG 61.635 57.895 0.00 0.00 39.59 5.87
201 202 2.300066 GGCACGGTTTTGCTTTCGC 61.300 57.895 0.00 0.00 42.56 4.70
202 203 0.660300 GAGGCACGGTTTTGCTTTCG 60.660 55.000 0.00 0.00 42.56 3.46
203 204 0.668535 AGAGGCACGGTTTTGCTTTC 59.331 50.000 0.00 0.00 42.56 2.62
204 205 0.668535 GAGAGGCACGGTTTTGCTTT 59.331 50.000 0.00 0.00 42.56 3.51
205 206 1.507141 CGAGAGGCACGGTTTTGCTT 61.507 55.000 0.00 0.00 42.56 3.91
206 207 1.961277 CGAGAGGCACGGTTTTGCT 60.961 57.895 0.00 0.00 42.56 3.91
207 208 2.251642 ACGAGAGGCACGGTTTTGC 61.252 57.895 0.00 0.00 42.18 3.68
208 209 0.878523 TCACGAGAGGCACGGTTTTG 60.879 55.000 0.00 0.00 34.93 2.44
209 210 0.179067 TTCACGAGAGGCACGGTTTT 60.179 50.000 0.00 0.00 34.93 2.43
210 211 0.179067 TTTCACGAGAGGCACGGTTT 60.179 50.000 0.00 0.00 34.93 3.27
211 212 0.600255 CTTTCACGAGAGGCACGGTT 60.600 55.000 0.00 0.00 34.93 4.44
212 213 1.006102 CTTTCACGAGAGGCACGGT 60.006 57.895 0.00 0.00 34.93 4.83
213 214 1.738099 CCTTTCACGAGAGGCACGG 60.738 63.158 0.00 0.00 34.93 4.94
214 215 1.738099 CCCTTTCACGAGAGGCACG 60.738 63.158 0.00 0.00 0.00 5.34
215 216 0.034896 TTCCCTTTCACGAGAGGCAC 59.965 55.000 0.00 0.00 0.00 5.01
216 217 0.762418 TTTCCCTTTCACGAGAGGCA 59.238 50.000 0.00 0.00 0.00 4.75
217 218 2.115343 ATTTCCCTTTCACGAGAGGC 57.885 50.000 0.00 0.00 0.00 4.70
218 219 4.392138 GTGTTATTTCCCTTTCACGAGAGG 59.608 45.833 0.00 0.00 0.00 3.69
219 220 4.994852 TGTGTTATTTCCCTTTCACGAGAG 59.005 41.667 0.00 0.00 0.00 3.20
220 221 4.963373 TGTGTTATTTCCCTTTCACGAGA 58.037 39.130 0.00 0.00 0.00 4.04
221 222 5.880054 ATGTGTTATTTCCCTTTCACGAG 57.120 39.130 0.00 0.00 0.00 4.18
222 223 6.039941 ACAAATGTGTTATTTCCCTTTCACGA 59.960 34.615 0.00 0.00 32.58 4.35
223 224 6.212955 ACAAATGTGTTATTTCCCTTTCACG 58.787 36.000 0.00 0.00 32.58 4.35
224 225 7.433680 AGACAAATGTGTTATTTCCCTTTCAC 58.566 34.615 0.00 0.00 38.41 3.18
225 226 7.595819 AGACAAATGTGTTATTTCCCTTTCA 57.404 32.000 0.00 0.00 38.41 2.69
226 227 8.764287 CAAAGACAAATGTGTTATTTCCCTTTC 58.236 33.333 0.00 0.00 38.41 2.62
227 228 8.264347 ACAAAGACAAATGTGTTATTTCCCTTT 58.736 29.630 0.00 0.00 38.41 3.11
228 229 7.791029 ACAAAGACAAATGTGTTATTTCCCTT 58.209 30.769 0.00 0.00 38.41 3.95
229 230 7.360113 ACAAAGACAAATGTGTTATTTCCCT 57.640 32.000 0.00 0.00 38.41 4.20
230 231 8.432110 AAACAAAGACAAATGTGTTATTTCCC 57.568 30.769 0.00 0.00 38.41 3.97
234 235 9.665719 AGGAAAAACAAAGACAAATGTGTTATT 57.334 25.926 0.00 0.00 38.41 1.40
235 236 9.665719 AAGGAAAAACAAAGACAAATGTGTTAT 57.334 25.926 0.00 0.00 38.41 1.89
236 237 9.495572 AAAGGAAAAACAAAGACAAATGTGTTA 57.504 25.926 0.00 0.00 38.41 2.41
237 238 7.977789 AAGGAAAAACAAAGACAAATGTGTT 57.022 28.000 0.00 0.00 38.41 3.32
238 239 7.977789 AAAGGAAAAACAAAGACAAATGTGT 57.022 28.000 0.00 0.00 42.10 3.72
239 240 8.288913 ACAAAAGGAAAAACAAAGACAAATGTG 58.711 29.630 0.00 0.00 0.00 3.21
240 241 8.288913 CACAAAAGGAAAAACAAAGACAAATGT 58.711 29.630 0.00 0.00 0.00 2.71
241 242 8.502387 TCACAAAAGGAAAAACAAAGACAAATG 58.498 29.630 0.00 0.00 0.00 2.32
242 243 8.614469 TCACAAAAGGAAAAACAAAGACAAAT 57.386 26.923 0.00 0.00 0.00 2.32
243 244 7.928706 TCTCACAAAAGGAAAAACAAAGACAAA 59.071 29.630 0.00 0.00 0.00 2.83
244 245 7.437748 TCTCACAAAAGGAAAAACAAAGACAA 58.562 30.769 0.00 0.00 0.00 3.18
245 246 6.987386 TCTCACAAAAGGAAAAACAAAGACA 58.013 32.000 0.00 0.00 0.00 3.41
246 247 6.531594 CCTCTCACAAAAGGAAAAACAAAGAC 59.468 38.462 0.00 0.00 34.35 3.01
247 248 6.630071 CCTCTCACAAAAGGAAAAACAAAGA 58.370 36.000 0.00 0.00 34.35 2.52
248 249 5.291858 GCCTCTCACAAAAGGAAAAACAAAG 59.708 40.000 0.00 0.00 34.35 2.77
249 250 5.175127 GCCTCTCACAAAAGGAAAAACAAA 58.825 37.500 0.00 0.00 34.35 2.83
250 251 4.221703 TGCCTCTCACAAAAGGAAAAACAA 59.778 37.500 0.00 0.00 34.35 2.83
251 252 3.766591 TGCCTCTCACAAAAGGAAAAACA 59.233 39.130 0.00 0.00 34.35 2.83
252 253 4.385358 TGCCTCTCACAAAAGGAAAAAC 57.615 40.909 0.00 0.00 34.35 2.43
253 254 4.202243 CCATGCCTCTCACAAAAGGAAAAA 60.202 41.667 0.00 0.00 34.35 1.94
254 255 3.321682 CCATGCCTCTCACAAAAGGAAAA 59.678 43.478 0.00 0.00 34.35 2.29
255 256 2.892852 CCATGCCTCTCACAAAAGGAAA 59.107 45.455 0.00 0.00 34.35 3.13
256 257 2.158475 ACCATGCCTCTCACAAAAGGAA 60.158 45.455 0.00 0.00 34.35 3.36
257 258 1.425066 ACCATGCCTCTCACAAAAGGA 59.575 47.619 0.00 0.00 34.35 3.36
258 259 1.915141 ACCATGCCTCTCACAAAAGG 58.085 50.000 0.00 0.00 35.65 3.11
259 260 4.053295 CAAAACCATGCCTCTCACAAAAG 58.947 43.478 0.00 0.00 0.00 2.27
260 261 3.740764 GCAAAACCATGCCTCTCACAAAA 60.741 43.478 0.00 0.00 40.49 2.44
261 262 2.224018 GCAAAACCATGCCTCTCACAAA 60.224 45.455 0.00 0.00 40.49 2.83
262 263 1.340889 GCAAAACCATGCCTCTCACAA 59.659 47.619 0.00 0.00 40.49 3.33
263 264 0.961019 GCAAAACCATGCCTCTCACA 59.039 50.000 0.00 0.00 40.49 3.58
264 265 0.961019 TGCAAAACCATGCCTCTCAC 59.039 50.000 0.00 0.00 45.83 3.51
265 266 1.820519 GATGCAAAACCATGCCTCTCA 59.179 47.619 0.00 0.00 45.83 3.27
266 267 1.135721 GGATGCAAAACCATGCCTCTC 59.864 52.381 0.00 0.00 45.83 3.20
267 268 1.188863 GGATGCAAAACCATGCCTCT 58.811 50.000 0.00 0.00 45.83 3.69
268 269 0.179129 CGGATGCAAAACCATGCCTC 60.179 55.000 0.00 0.00 45.83 4.70
269 270 0.899717 ACGGATGCAAAACCATGCCT 60.900 50.000 0.00 0.00 45.83 4.75
270 271 0.737019 CACGGATGCAAAACCATGCC 60.737 55.000 0.00 0.00 45.83 4.40
271 272 0.243365 TCACGGATGCAAAACCATGC 59.757 50.000 0.00 0.00 46.58 4.06
272 273 2.721274 TTCACGGATGCAAAACCATG 57.279 45.000 0.00 0.00 0.00 3.66
273 274 2.610232 GCTTTCACGGATGCAAAACCAT 60.610 45.455 0.00 0.00 0.00 3.55
274 275 1.269517 GCTTTCACGGATGCAAAACCA 60.270 47.619 0.00 0.00 0.00 3.67
275 276 1.418373 GCTTTCACGGATGCAAAACC 58.582 50.000 0.00 0.00 0.00 3.27
276 277 1.269517 TGGCTTTCACGGATGCAAAAC 60.270 47.619 0.00 0.00 0.00 2.43
277 278 1.035923 TGGCTTTCACGGATGCAAAA 58.964 45.000 0.00 0.00 0.00 2.44
278 279 0.313672 GTGGCTTTCACGGATGCAAA 59.686 50.000 0.00 0.00 36.56 3.68
279 280 1.956043 GTGGCTTTCACGGATGCAA 59.044 52.632 0.00 0.00 36.56 4.08
280 281 3.667087 GTGGCTTTCACGGATGCA 58.333 55.556 0.00 0.00 36.56 3.96
287 288 2.422276 AGCAAAATCGTGGCTTTCAC 57.578 45.000 0.00 0.00 42.74 3.18
292 293 1.501169 GCAAAAGCAAAATCGTGGCT 58.499 45.000 0.00 0.00 40.14 4.75
293 294 0.161446 CGCAAAAGCAAAATCGTGGC 59.839 50.000 0.00 0.00 0.00 5.01
294 295 0.783579 CCGCAAAAGCAAAATCGTGG 59.216 50.000 0.00 0.00 0.00 4.94
295 296 0.783579 CCCGCAAAAGCAAAATCGTG 59.216 50.000 0.00 0.00 0.00 4.35
296 297 0.671251 TCCCGCAAAAGCAAAATCGT 59.329 45.000 0.00 0.00 0.00 3.73
297 298 1.339711 CTCCCGCAAAAGCAAAATCG 58.660 50.000 0.00 0.00 0.00 3.34
298 299 1.000843 ACCTCCCGCAAAAGCAAAATC 59.999 47.619 0.00 0.00 0.00 2.17
299 300 1.047801 ACCTCCCGCAAAAGCAAAAT 58.952 45.000 0.00 0.00 0.00 1.82
300 301 0.103937 CACCTCCCGCAAAAGCAAAA 59.896 50.000 0.00 0.00 0.00 2.44
301 302 1.739049 CACCTCCCGCAAAAGCAAA 59.261 52.632 0.00 0.00 0.00 3.68
302 303 2.855514 GCACCTCCCGCAAAAGCAA 61.856 57.895 0.00 0.00 0.00 3.91
303 304 3.294493 GCACCTCCCGCAAAAGCA 61.294 61.111 0.00 0.00 0.00 3.91
304 305 4.404654 CGCACCTCCCGCAAAAGC 62.405 66.667 0.00 0.00 0.00 3.51
305 306 3.737172 CCGCACCTCCCGCAAAAG 61.737 66.667 0.00 0.00 0.00 2.27
327 328 1.160137 ATGTTCTGTTTGCGAGAGGC 58.840 50.000 0.00 0.00 43.96 4.70
328 329 2.666619 GCAATGTTCTGTTTGCGAGAGG 60.667 50.000 0.00 0.00 38.88 3.69
329 330 2.578495 GCAATGTTCTGTTTGCGAGAG 58.422 47.619 0.00 0.00 38.88 3.20
330 331 2.686558 GCAATGTTCTGTTTGCGAGA 57.313 45.000 0.00 0.00 38.88 4.04
334 335 4.612932 TTTTTGGCAATGTTCTGTTTGC 57.387 36.364 0.00 0.00 45.82 3.68
391 392 5.524281 GGCCGTACCTTTCAAAAATGAAAAA 59.476 36.000 5.61 0.00 37.35 1.94
392 393 5.051153 GGCCGTACCTTTCAAAAATGAAAA 58.949 37.500 5.61 0.00 37.35 2.29
393 394 4.623002 GGCCGTACCTTTCAAAAATGAAA 58.377 39.130 4.17 4.17 36.49 2.69
394 395 3.304794 CGGCCGTACCTTTCAAAAATGAA 60.305 43.478 19.50 0.00 35.61 2.57
395 396 2.226912 CGGCCGTACCTTTCAAAAATGA 59.773 45.455 19.50 0.00 35.61 2.57
396 397 2.030628 ACGGCCGTACCTTTCAAAAATG 60.031 45.455 33.34 0.00 35.61 2.32
397 398 2.030628 CACGGCCGTACCTTTCAAAAAT 60.031 45.455 33.70 0.00 35.61 1.82
398 399 1.334243 CACGGCCGTACCTTTCAAAAA 59.666 47.619 33.70 0.00 35.61 1.94
399 400 0.945813 CACGGCCGTACCTTTCAAAA 59.054 50.000 33.70 0.00 35.61 2.44
400 401 1.508808 GCACGGCCGTACCTTTCAAA 61.509 55.000 33.70 0.00 35.61 2.69
401 402 1.962306 GCACGGCCGTACCTTTCAA 60.962 57.895 33.70 0.00 35.61 2.69
402 403 2.357760 GCACGGCCGTACCTTTCA 60.358 61.111 33.70 0.00 35.61 2.69
403 404 3.122971 GGCACGGCCGTACCTTTC 61.123 66.667 35.63 18.05 39.62 2.62
414 415 1.743252 GCTTCCTCAAGAGGCACGG 60.743 63.158 11.31 2.89 46.54 4.94
415 416 3.882025 GCTTCCTCAAGAGGCACG 58.118 61.111 11.31 3.48 46.54 5.34
420 421 2.555757 CAGGGTTTTGCTTCCTCAAGAG 59.444 50.000 0.00 0.00 0.00 2.85
421 422 2.586425 CAGGGTTTTGCTTCCTCAAGA 58.414 47.619 0.00 0.00 0.00 3.02
422 423 1.000171 GCAGGGTTTTGCTTCCTCAAG 60.000 52.381 0.00 0.00 40.89 3.02
423 424 1.039856 GCAGGGTTTTGCTTCCTCAA 58.960 50.000 0.00 0.00 40.89 3.02
424 425 0.827507 GGCAGGGTTTTGCTTCCTCA 60.828 55.000 0.00 0.00 43.57 3.86
425 426 0.540597 AGGCAGGGTTTTGCTTCCTC 60.541 55.000 0.00 0.00 43.57 3.71
426 427 0.540597 GAGGCAGGGTTTTGCTTCCT 60.541 55.000 0.00 0.00 42.44 3.36
427 428 1.967535 GAGGCAGGGTTTTGCTTCC 59.032 57.895 0.00 0.00 42.44 3.46
428 429 0.884514 GAGAGGCAGGGTTTTGCTTC 59.115 55.000 2.35 2.35 46.89 3.86
429 430 0.890996 CGAGAGGCAGGGTTTTGCTT 60.891 55.000 0.00 0.00 43.57 3.91
430 431 1.302832 CGAGAGGCAGGGTTTTGCT 60.303 57.895 0.00 0.00 43.57 3.91
431 432 2.982744 GCGAGAGGCAGGGTTTTGC 61.983 63.158 0.00 0.00 42.87 3.68
432 433 2.680913 CGCGAGAGGCAGGGTTTTG 61.681 63.158 0.00 0.00 43.84 2.44
433 434 2.358737 CGCGAGAGGCAGGGTTTT 60.359 61.111 0.00 0.00 43.84 2.43
434 435 4.394712 CCGCGAGAGGCAGGGTTT 62.395 66.667 8.23 0.00 43.84 3.27
437 438 4.521062 CTTCCGCGAGAGGCAGGG 62.521 72.222 8.23 0.00 43.84 4.45
442 443 1.497722 GTTTTGCTTCCGCGAGAGG 59.502 57.895 8.23 4.88 39.65 3.69
443 444 1.497722 GGTTTTGCTTCCGCGAGAG 59.502 57.895 8.23 5.93 39.65 3.20
444 445 2.314647 CGGTTTTGCTTCCGCGAGA 61.315 57.895 8.23 0.00 40.28 4.04
445 446 2.173382 CGGTTTTGCTTCCGCGAG 59.827 61.111 8.23 0.00 40.28 5.03
450 451 1.172812 AGAGGCACGGTTTTGCTTCC 61.173 55.000 4.54 0.00 46.96 3.46
451 452 0.238553 GAGAGGCACGGTTTTGCTTC 59.761 55.000 0.28 0.28 46.31 3.86
452 453 0.465460 TGAGAGGCACGGTTTTGCTT 60.465 50.000 0.00 0.00 42.56 3.91
453 454 0.250901 ATGAGAGGCACGGTTTTGCT 60.251 50.000 0.00 0.00 42.56 3.91
454 455 0.109597 CATGAGAGGCACGGTTTTGC 60.110 55.000 0.00 0.00 42.18 3.68
455 456 1.522668 TCATGAGAGGCACGGTTTTG 58.477 50.000 0.00 0.00 0.00 2.44
456 457 2.270352 TTCATGAGAGGCACGGTTTT 57.730 45.000 0.00 0.00 0.00 2.43
457 458 2.270352 TTTCATGAGAGGCACGGTTT 57.730 45.000 0.00 0.00 0.00 3.27
458 459 2.270352 TTTTCATGAGAGGCACGGTT 57.730 45.000 0.00 0.00 0.00 4.44
459 460 2.496899 ATTTTCATGAGAGGCACGGT 57.503 45.000 0.00 0.00 0.00 4.83
460 461 4.963276 TTTATTTTCATGAGAGGCACGG 57.037 40.909 0.00 0.00 0.00 4.94
501 502 1.314730 GAGGCCTGTCGGAACAAAAA 58.685 50.000 12.00 0.00 34.24 1.94
502 503 0.181587 TGAGGCCTGTCGGAACAAAA 59.818 50.000 12.00 0.00 34.24 2.44
503 504 0.400213 ATGAGGCCTGTCGGAACAAA 59.600 50.000 12.00 0.00 34.24 2.83
504 505 0.036388 GATGAGGCCTGTCGGAACAA 60.036 55.000 12.00 0.00 34.24 2.83
505 506 1.596934 GATGAGGCCTGTCGGAACA 59.403 57.895 12.00 0.00 0.00 3.18
506 507 1.519455 CGATGAGGCCTGTCGGAAC 60.519 63.158 23.13 4.05 0.00 3.62
507 508 1.254975 TTCGATGAGGCCTGTCGGAA 61.255 55.000 27.60 19.84 36.14 4.30
508 509 1.680989 TTCGATGAGGCCTGTCGGA 60.681 57.895 27.60 21.04 36.14 4.55
509 510 1.519455 GTTCGATGAGGCCTGTCGG 60.519 63.158 27.60 14.89 36.14 4.79
510 511 0.389817 TTGTTCGATGAGGCCTGTCG 60.390 55.000 24.30 24.30 36.75 4.35
511 512 1.808411 TTTGTTCGATGAGGCCTGTC 58.192 50.000 12.00 7.43 0.00 3.51
512 513 1.880027 GTTTTGTTCGATGAGGCCTGT 59.120 47.619 12.00 0.00 0.00 4.00
513 514 1.200020 GGTTTTGTTCGATGAGGCCTG 59.800 52.381 12.00 0.00 0.00 4.85
514 515 1.534729 GGTTTTGTTCGATGAGGCCT 58.465 50.000 3.86 3.86 0.00 5.19
515 516 0.168128 CGGTTTTGTTCGATGAGGCC 59.832 55.000 0.00 0.00 0.00 5.19
516 517 0.872388 ACGGTTTTGTTCGATGAGGC 59.128 50.000 0.00 0.00 0.00 4.70
517 518 3.183237 GAACGGTTTTGTTCGATGAGG 57.817 47.619 0.00 0.00 38.91 3.86
539 540 4.851179 GTTCCCCGATCGCCCCAC 62.851 72.222 10.32 0.00 0.00 4.61
557 558 0.456312 CACCTCACGCCGAACTAGTC 60.456 60.000 0.00 0.00 0.00 2.59
558 559 1.585006 CACCTCACGCCGAACTAGT 59.415 57.895 0.00 0.00 0.00 2.57
559 560 1.153823 CCACCTCACGCCGAACTAG 60.154 63.158 0.00 0.00 0.00 2.57
560 561 1.466025 AACCACCTCACGCCGAACTA 61.466 55.000 0.00 0.00 0.00 2.24
561 562 1.466025 TAACCACCTCACGCCGAACT 61.466 55.000 0.00 0.00 0.00 3.01
562 563 0.600782 TTAACCACCTCACGCCGAAC 60.601 55.000 0.00 0.00 0.00 3.95
563 564 0.106335 TTTAACCACCTCACGCCGAA 59.894 50.000 0.00 0.00 0.00 4.30
564 565 0.106335 TTTTAACCACCTCACGCCGA 59.894 50.000 0.00 0.00 0.00 5.54
565 566 0.945813 TTTTTAACCACCTCACGCCG 59.054 50.000 0.00 0.00 0.00 6.46
566 567 2.817844 AGATTTTTAACCACCTCACGCC 59.182 45.455 0.00 0.00 0.00 5.68
567 568 3.500680 TCAGATTTTTAACCACCTCACGC 59.499 43.478 0.00 0.00 0.00 5.34
568 569 4.377022 CGTCAGATTTTTAACCACCTCACG 60.377 45.833 0.00 0.00 0.00 4.35
569 570 4.514066 ACGTCAGATTTTTAACCACCTCAC 59.486 41.667 0.00 0.00 0.00 3.51
570 571 4.710324 ACGTCAGATTTTTAACCACCTCA 58.290 39.130 0.00 0.00 0.00 3.86
571 572 5.469084 AGAACGTCAGATTTTTAACCACCTC 59.531 40.000 0.00 0.00 0.00 3.85
572 573 5.238650 CAGAACGTCAGATTTTTAACCACCT 59.761 40.000 0.00 0.00 0.00 4.00
573 574 5.008316 ACAGAACGTCAGATTTTTAACCACC 59.992 40.000 0.00 0.00 0.00 4.61
574 575 5.907391 CACAGAACGTCAGATTTTTAACCAC 59.093 40.000 0.00 0.00 0.00 4.16
575 576 5.008217 CCACAGAACGTCAGATTTTTAACCA 59.992 40.000 0.00 0.00 0.00 3.67
576 577 5.008316 ACCACAGAACGTCAGATTTTTAACC 59.992 40.000 0.00 0.00 0.00 2.85
577 578 6.056428 ACCACAGAACGTCAGATTTTTAAC 57.944 37.500 0.00 0.00 0.00 2.01
578 579 6.687081 AACCACAGAACGTCAGATTTTTAA 57.313 33.333 0.00 0.00 0.00 1.52
579 580 7.118680 GGATAACCACAGAACGTCAGATTTTTA 59.881 37.037 0.00 0.00 35.97 1.52
580 581 6.072673 GGATAACCACAGAACGTCAGATTTTT 60.073 38.462 0.00 0.00 35.97 1.94
581 582 5.411669 GGATAACCACAGAACGTCAGATTTT 59.588 40.000 0.00 0.00 35.97 1.82
582 583 4.935808 GGATAACCACAGAACGTCAGATTT 59.064 41.667 0.00 0.00 35.97 2.17
583 584 4.223032 AGGATAACCACAGAACGTCAGATT 59.777 41.667 0.00 0.00 38.94 2.40
584 585 3.769844 AGGATAACCACAGAACGTCAGAT 59.230 43.478 0.00 0.00 38.94 2.90
585 586 3.162666 AGGATAACCACAGAACGTCAGA 58.837 45.455 0.00 0.00 38.94 3.27
586 587 3.594603 AGGATAACCACAGAACGTCAG 57.405 47.619 0.00 0.00 38.94 3.51
587 588 4.084287 ACTAGGATAACCACAGAACGTCA 58.916 43.478 0.00 0.00 38.94 4.35
588 589 4.715527 ACTAGGATAACCACAGAACGTC 57.284 45.455 0.00 0.00 38.94 4.34
589 590 4.525487 TCAACTAGGATAACCACAGAACGT 59.475 41.667 0.00 0.00 38.94 3.99
590 591 5.068234 TCAACTAGGATAACCACAGAACG 57.932 43.478 0.00 0.00 38.94 3.95
591 592 5.817816 CCATCAACTAGGATAACCACAGAAC 59.182 44.000 0.00 0.00 38.94 3.01
592 593 5.629133 GCCATCAACTAGGATAACCACAGAA 60.629 44.000 0.00 0.00 38.94 3.02
593 594 4.141711 GCCATCAACTAGGATAACCACAGA 60.142 45.833 0.00 0.00 38.94 3.41
594 595 4.130118 GCCATCAACTAGGATAACCACAG 58.870 47.826 0.00 0.00 38.94 3.66
595 596 3.118038 GGCCATCAACTAGGATAACCACA 60.118 47.826 0.00 0.00 38.94 4.17
596 597 3.477530 GGCCATCAACTAGGATAACCAC 58.522 50.000 0.00 0.00 38.94 4.16
597 598 2.441750 GGGCCATCAACTAGGATAACCA 59.558 50.000 4.39 0.00 38.94 3.67
598 599 2.441750 TGGGCCATCAACTAGGATAACC 59.558 50.000 0.00 0.00 0.00 2.85
599 600 3.857157 TGGGCCATCAACTAGGATAAC 57.143 47.619 0.00 0.00 0.00 1.89
600 601 3.007940 CGATGGGCCATCAACTAGGATAA 59.992 47.826 37.95 0.00 40.54 1.75
601 602 2.567169 CGATGGGCCATCAACTAGGATA 59.433 50.000 37.95 0.13 40.54 2.59
602 603 1.349026 CGATGGGCCATCAACTAGGAT 59.651 52.381 37.95 8.03 40.54 3.24
603 604 0.758734 CGATGGGCCATCAACTAGGA 59.241 55.000 37.95 0.93 40.54 2.94
604 605 0.758734 TCGATGGGCCATCAACTAGG 59.241 55.000 37.95 24.09 40.54 3.02
605 606 2.620251 TTCGATGGGCCATCAACTAG 57.380 50.000 37.95 24.73 40.54 2.57
606 607 3.576078 AATTCGATGGGCCATCAACTA 57.424 42.857 37.95 23.11 40.54 2.24
607 608 2.442236 AATTCGATGGGCCATCAACT 57.558 45.000 37.95 22.10 40.54 3.16
608 609 3.525268 AAAATTCGATGGGCCATCAAC 57.475 42.857 37.95 18.69 40.54 3.18
609 610 4.097741 CAGTAAAATTCGATGGGCCATCAA 59.902 41.667 37.95 30.33 40.54 2.57
610 611 3.631686 CAGTAAAATTCGATGGGCCATCA 59.368 43.478 37.95 24.65 40.54 3.07
611 612 3.004734 CCAGTAAAATTCGATGGGCCATC 59.995 47.826 32.35 32.35 37.50 3.51
612 613 2.958355 CCAGTAAAATTCGATGGGCCAT 59.042 45.455 21.39 21.39 0.00 4.40
613 614 2.374184 CCAGTAAAATTCGATGGGCCA 58.626 47.619 9.61 9.61 0.00 5.36
614 615 1.067060 GCCAGTAAAATTCGATGGGCC 59.933 52.381 0.00 0.00 34.17 5.80
615 616 1.748493 TGCCAGTAAAATTCGATGGGC 59.252 47.619 1.43 0.00 40.51 5.36
616 617 2.223572 GCTGCCAGTAAAATTCGATGGG 60.224 50.000 1.43 0.00 0.00 4.00
617 618 2.423185 TGCTGCCAGTAAAATTCGATGG 59.577 45.455 0.00 0.00 0.00 3.51
618 619 3.488047 CCTGCTGCCAGTAAAATTCGATG 60.488 47.826 0.00 0.00 37.38 3.84
619 620 2.684881 CCTGCTGCCAGTAAAATTCGAT 59.315 45.455 0.00 0.00 37.38 3.59
620 621 2.083774 CCTGCTGCCAGTAAAATTCGA 58.916 47.619 0.00 0.00 37.38 3.71
621 622 2.083774 TCCTGCTGCCAGTAAAATTCG 58.916 47.619 0.00 0.00 37.38 3.34
622 623 3.347216 TCTCCTGCTGCCAGTAAAATTC 58.653 45.455 0.00 0.00 37.38 2.17
623 624 3.009473 TCTCTCCTGCTGCCAGTAAAATT 59.991 43.478 0.00 0.00 37.38 1.82
624 625 2.573462 TCTCTCCTGCTGCCAGTAAAAT 59.427 45.455 0.00 0.00 37.38 1.82
625 626 1.977854 TCTCTCCTGCTGCCAGTAAAA 59.022 47.619 0.00 0.00 37.38 1.52
626 627 1.644509 TCTCTCCTGCTGCCAGTAAA 58.355 50.000 0.00 0.00 37.38 2.01
627 628 1.552337 CTTCTCTCCTGCTGCCAGTAA 59.448 52.381 0.00 0.00 37.38 2.24
628 629 1.189752 CTTCTCTCCTGCTGCCAGTA 58.810 55.000 0.00 0.00 37.38 2.74
629 630 0.835543 ACTTCTCTCCTGCTGCCAGT 60.836 55.000 0.00 0.00 37.38 4.00
630 631 0.391395 CACTTCTCTCCTGCTGCCAG 60.391 60.000 0.00 0.00 38.85 4.85
631 632 1.675801 CACTTCTCTCCTGCTGCCA 59.324 57.895 0.00 0.00 0.00 4.92
632 633 1.744741 GCACTTCTCTCCTGCTGCC 60.745 63.158 0.00 0.00 0.00 4.85
633 634 0.392729 ATGCACTTCTCTCCTGCTGC 60.393 55.000 0.00 0.00 0.00 5.25
634 635 2.483363 CCTATGCACTTCTCTCCTGCTG 60.483 54.545 0.00 0.00 0.00 4.41
635 636 1.761784 CCTATGCACTTCTCTCCTGCT 59.238 52.381 0.00 0.00 0.00 4.24
636 637 1.759445 TCCTATGCACTTCTCTCCTGC 59.241 52.381 0.00 0.00 0.00 4.85
637 638 4.440880 CTTTCCTATGCACTTCTCTCCTG 58.559 47.826 0.00 0.00 0.00 3.86
638 639 3.454082 CCTTTCCTATGCACTTCTCTCCT 59.546 47.826 0.00 0.00 0.00 3.69
639 640 3.452627 TCCTTTCCTATGCACTTCTCTCC 59.547 47.826 0.00 0.00 0.00 3.71
640 641 4.161377 AGTCCTTTCCTATGCACTTCTCTC 59.839 45.833 0.00 0.00 0.00 3.20
641 642 4.100373 AGTCCTTTCCTATGCACTTCTCT 58.900 43.478 0.00 0.00 0.00 3.10
642 643 4.479786 AGTCCTTTCCTATGCACTTCTC 57.520 45.455 0.00 0.00 0.00 2.87
643 644 4.287067 TGAAGTCCTTTCCTATGCACTTCT 59.713 41.667 10.16 0.00 40.19 2.85
644 645 4.579869 TGAAGTCCTTTCCTATGCACTTC 58.420 43.478 0.00 0.00 40.03 3.01
645 646 4.287067 TCTGAAGTCCTTTCCTATGCACTT 59.713 41.667 0.00 0.00 34.77 3.16
646 647 3.840666 TCTGAAGTCCTTTCCTATGCACT 59.159 43.478 0.00 0.00 34.77 4.40
647 648 4.187694 CTCTGAAGTCCTTTCCTATGCAC 58.812 47.826 0.00 0.00 34.77 4.57
648 649 3.369892 GCTCTGAAGTCCTTTCCTATGCA 60.370 47.826 0.00 0.00 34.77 3.96
649 650 3.202097 GCTCTGAAGTCCTTTCCTATGC 58.798 50.000 0.00 0.00 34.77 3.14
650 651 3.131223 TCGCTCTGAAGTCCTTTCCTATG 59.869 47.826 0.00 0.00 34.77 2.23
651 652 3.366396 TCGCTCTGAAGTCCTTTCCTAT 58.634 45.455 0.00 0.00 34.77 2.57
652 653 2.803956 TCGCTCTGAAGTCCTTTCCTA 58.196 47.619 0.00 0.00 34.77 2.94
653 654 1.633774 TCGCTCTGAAGTCCTTTCCT 58.366 50.000 0.00 0.00 34.77 3.36
654 655 2.682155 ATCGCTCTGAAGTCCTTTCC 57.318 50.000 0.00 0.00 34.77 3.13
655 656 4.379339 ACTATCGCTCTGAAGTCCTTTC 57.621 45.455 0.00 0.00 36.29 2.62
656 657 4.201930 CGTACTATCGCTCTGAAGTCCTTT 60.202 45.833 0.00 0.00 0.00 3.11
657 658 3.312973 CGTACTATCGCTCTGAAGTCCTT 59.687 47.826 0.00 0.00 0.00 3.36
658 659 2.873472 CGTACTATCGCTCTGAAGTCCT 59.127 50.000 0.00 0.00 0.00 3.85
659 660 2.031857 CCGTACTATCGCTCTGAAGTCC 60.032 54.545 0.00 0.00 0.00 3.85
660 661 2.602694 GCCGTACTATCGCTCTGAAGTC 60.603 54.545 0.00 0.00 0.00 3.01
661 662 1.334243 GCCGTACTATCGCTCTGAAGT 59.666 52.381 0.00 0.00 0.00 3.01
662 663 1.660614 CGCCGTACTATCGCTCTGAAG 60.661 57.143 0.00 0.00 0.00 3.02
663 664 0.306840 CGCCGTACTATCGCTCTGAA 59.693 55.000 0.00 0.00 0.00 3.02
664 665 1.939597 CGCCGTACTATCGCTCTGA 59.060 57.895 0.00 0.00 0.00 3.27
665 666 1.726322 GCGCCGTACTATCGCTCTG 60.726 63.158 13.48 0.00 44.79 3.35
673 674 1.431488 CTCGTGTAGGCGCCGTACTA 61.431 60.000 23.20 12.29 0.00 1.82
674 675 2.747460 TCGTGTAGGCGCCGTACT 60.747 61.111 23.20 5.85 0.00 2.73
677 678 3.812019 CTCTCGTGTAGGCGCCGT 61.812 66.667 23.20 12.38 0.00 5.68
729 730 3.111484 ACCCCACCACATTGTTCTTTTT 58.889 40.909 0.00 0.00 0.00 1.94
730 731 2.758130 ACCCCACCACATTGTTCTTTT 58.242 42.857 0.00 0.00 0.00 2.27
752 753 3.129502 CACGCATGTGGGGCTCAG 61.130 66.667 11.65 0.00 42.59 3.35
820 821 3.679389 AGACAAACCATGCTGAACCTAG 58.321 45.455 0.00 0.00 0.00 3.02
825 826 3.563808 GTGTGTAGACAAACCATGCTGAA 59.436 43.478 0.00 0.00 32.49 3.02
860 861 1.595382 CGGGATGATGACGGGAAGC 60.595 63.158 0.00 0.00 0.00 3.86
909 926 4.511443 GCATGTGAGCGCGAGTGC 62.511 66.667 12.10 6.16 37.91 4.40
910 927 2.796425 GAGCATGTGAGCGCGAGTG 61.796 63.158 12.10 0.00 40.15 3.51
912 929 3.260483 GGAGCATGTGAGCGCGAG 61.260 66.667 12.10 0.00 40.15 5.03
915 932 4.819761 TCCGGAGCATGTGAGCGC 62.820 66.667 0.00 0.00 40.15 5.92
916 933 2.125552 TTCCGGAGCATGTGAGCG 60.126 61.111 3.34 0.00 40.15 5.03
939 959 2.727777 GCGTGTGCGTCTCTTCATATA 58.272 47.619 0.00 0.00 40.81 0.86
980 1000 4.641645 TTGCTCGCACCAGTGGGG 62.642 66.667 15.21 11.51 42.87 4.96
2169 2316 2.282110 TGCGGCAGCCTGCTAAAA 60.282 55.556 23.14 6.03 44.28 1.52
2196 2343 0.884704 ATTATTACAGGCCGCCGCAG 60.885 55.000 3.05 0.63 36.38 5.18
2232 2394 4.318618 CGCAGTAGTCGACGAATACACTAT 60.319 45.833 30.14 12.41 35.86 2.12
2270 2435 5.656416 TCAGACCTTTGATGGAAAGTGTTTT 59.344 36.000 0.00 0.00 39.71 2.43
2287 2458 5.026121 TGATGACTGGTTCTTATCAGACCT 58.974 41.667 0.00 0.00 35.20 3.85
2301 2481 0.826715 ACGATGGGTCTGATGACTGG 59.173 55.000 0.00 0.00 42.54 4.00
2368 2548 6.015434 ACATGATTTTTCTTTAAAGGGCGACT 60.015 34.615 15.13 0.00 0.00 4.18
2399 4307 1.831389 CGGCGAATGCGGGTCATTAG 61.831 60.000 0.00 0.00 44.95 1.73
2460 4368 2.601868 GGAGAGGGTCGGAGCCTA 59.398 66.667 27.42 0.00 38.74 3.93
2475 4383 0.759436 GGCAAGAGATACGGAGGGGA 60.759 60.000 0.00 0.00 0.00 4.81
2499 4407 0.966920 CGGCGATATTAGGGAGGTGT 59.033 55.000 0.00 0.00 0.00 4.16
2534 4442 2.831366 GCATAGGACGAGGACGCGA 61.831 63.158 15.93 0.00 43.96 5.87
2535 4443 2.353607 GCATAGGACGAGGACGCG 60.354 66.667 3.53 3.53 43.96 6.01
2536 4444 2.131294 ATCGCATAGGACGAGGACGC 62.131 60.000 0.00 0.00 43.74 5.19
2537 4445 0.311165 AATCGCATAGGACGAGGACG 59.689 55.000 0.00 0.00 43.74 4.79
2538 4446 1.772182 CAATCGCATAGGACGAGGAC 58.228 55.000 0.00 0.00 43.74 3.85
2539 4447 0.032130 GCAATCGCATAGGACGAGGA 59.968 55.000 0.00 0.00 43.74 3.71
2540 4448 1.278172 CGCAATCGCATAGGACGAGG 61.278 60.000 0.00 0.00 43.74 4.63
2541 4449 0.595053 ACGCAATCGCATAGGACGAG 60.595 55.000 0.00 0.00 43.74 4.18
2542 4450 0.594028 GACGCAATCGCATAGGACGA 60.594 55.000 0.00 0.00 44.75 4.20
2576 4484 3.338126 GACGAGGACGCGTGGATGT 62.338 63.158 20.70 10.36 45.72 3.06
2614 4522 1.139853 GAGGAGAATGAATCTGGGCGT 59.860 52.381 0.00 0.00 38.96 5.68
2615 4523 1.542108 GGAGGAGAATGAATCTGGGCG 60.542 57.143 0.00 0.00 38.96 6.13
2631 4539 0.769873 CATCAATGGGGAGGAGGAGG 59.230 60.000 0.00 0.00 0.00 4.30
2646 4554 0.745486 CATGAACTGAGGCCGCATCA 60.745 55.000 10.50 12.67 0.00 3.07
2744 4652 3.432588 CAGAGGAGACGACGCGGT 61.433 66.667 12.47 0.00 0.00 5.68
2745 4653 3.102107 CTCAGAGGAGACGACGCGG 62.102 68.421 12.47 0.00 44.26 6.46
2803 4711 2.692741 GTGGGGAAGGGAGGGGAG 60.693 72.222 0.00 0.00 0.00 4.30
2828 4736 3.379445 GGGTTCCTCTGACGGCGA 61.379 66.667 16.62 0.00 0.00 5.54
2834 4742 1.612146 TGCCGATGGGTTCCTCTGA 60.612 57.895 0.00 0.00 34.97 3.27
3078 4987 4.011023 CTCGAAGTTGAGGGTCTCTTCTA 58.989 47.826 0.00 0.00 35.55 2.10
3086 4995 1.006102 CGCACTCGAAGTTGAGGGT 60.006 57.895 0.00 0.00 41.60 4.34
3101 5012 2.983030 GTGGCATGGGTCAACGCA 60.983 61.111 2.17 2.17 43.04 5.24
3162 5074 6.206048 CGACACTACCCAAAAACTTTTAGGAT 59.794 38.462 6.42 0.00 33.43 3.24
3175 5087 2.028748 GGACTAAAGCGACACTACCCAA 60.029 50.000 0.00 0.00 0.00 4.12
3180 5092 5.251764 AGAAGTAGGACTAAAGCGACACTA 58.748 41.667 0.00 0.00 0.00 2.74
3187 5099 7.731882 AGTTTGAAAGAAGTAGGACTAAAGC 57.268 36.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.